chr1	631535	631536	chr1:631536:A:G	rs3949348	A	G	.	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	631552	631553	chr1:631553:A:G	rs113120793	A	G	.	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	899547	899548	chr1:899548:A:G	rs4422949	A	G	a	Hoxa9_MA0594.1	7	1	+	7.738551051121958	0.8356173774190387	CCAATACATCA
chr1	911306	911307	chr1:911307:C:T	rs138611976	C	T	c	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	911307	911308	chr1:911308:G:A	rs149296754	G	A	g	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	921037	921038	chr1:921038:G:A	rs566760163	G	A	g	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	921176	921177	chr1:921177:A:C	rs147866846	A	C	a	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	921202	921203	chr1:921203:G:A	rs141671872	G	A	g	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	1095184	1095185	chr1:1095185:C:T	rs6687776	C	T	C	Hoxa9_MA0594.1	0	1	-	8.425452190470368	7.560266677747817	GCAATTAATCA
chr1	1182463	1182464	chr1:1182464:G:A	rs577751055	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	1326443	1326444	chr1:1326444:G:C	rs307348	G	C	C	Hoxa9_MA0594.1	1	1	-	7.656437520341079	4.597669558694117	GCCATCTATCT
chr1	1415791	1415792	chr1:1415792:A:T	rs143096394	A	T	A	Hoxa9_MA0594.1	8	1	-	8.73221190369779	5.262451850598338	CTTATCAATCA
chr1	1422728	1422729	chr1:1422729:C:T	rs146237217	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	1577773	1577774	chr1:1577774:G:T	rs76878727	G	T	G	Hoxa9_MA0594.1	5	1	-	11.967129168713758	12.520546191379072	GCCATCAATCA
chr1	1577902	1577903	chr1:1577903:A:G	rs144752615	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	1577905	1577906	chr1:1577906:A:G	rs148503044	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	1776300	1776301	chr1:1776301:T:G	rs12041925	T	G	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	1994838	1994839	chr1:1994839:A:T	rs6667687	A	T	A	Hoxa9_MA0594.1	10	1	-	9.064232820513286	10.53382270774282	ACAATAAATCT
chr1	2402821	2402822	chr1:2402822:G:T	rs72642191	G	T	g	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	2833355	2833356	chr1:2833356:T:C	rs4648482	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	3250435	3250436	chr1:3250436:C:A	rs72632116	C	A	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	3251715	3251716	chr1:3251716:A:G	rs10797386	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	3275173	3275174	chr1:3275174:A:G	rs2455130	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	3293740	3293741	chr1:3293741:T:A	rs12565882	T	A	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	3334728	3334729	chr1:3334729:C:T	rs2483276	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	3334759	3334760	chr1:3334760:G:T	rs2483277	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	3365671	3365672	chr1:3365672:C:G	rs935645603	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	3404035	3404036	chr1:3404036:G:A	rs113511153	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	3630370	3630371	chr1:3630371:G:A	rs2821007	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	4010991	4010992	chr1:4010992:C:T	rs6664533	C	T	C	Hoxa9_MA0594.1	0	1	-	8.908361207066799	8.043175694344246	GGCATCAATCA
chr1	4034007	4034008	chr1:4034008:C:T	rs12137595	C	T	C	Hoxa9_MA0594.1	9	1	+	7.618418680842992	4.993705462258753	GCTGTAAATCA
chr1	4184796	4184797	chr1:4184797:G:T	rs4654419	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	4211854	4211855	chr1:4211855:A:G	rs7553814	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	4227331	4227332	chr1:4227332:G:A	rs112629950	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	4371203	4371204	chr1:4371204:A:C	rs572439	A	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	4371237	4371238	chr1:4371238:G:A	rs572343	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	4380670	4380671	chr1:4380671:G:A	rs74050762	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	4380688	4380689	chr1:4380689:C:T	rs589870	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	4422904	4422905	chr1:4422905:T:C	rs74049597	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	4573624	4573625	chr1:4573625:G:A	rs7527742	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	4585994	4585995	chr1:4585995:A:G	rs617610	A	G	G	Hoxa9_MA0594.1	3	1	+	10.004402379582464	7.022605952173604	GCCATGAATCA
chr1	4586012	4586013	chr1:4586013:C:A	rs561468	C	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	4666837	4666838	chr1:4666838:C:T	rs113348625	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	4666838	4666839	chr1:4666839:A:G	rs10799254	A	G	a	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	4666932	4666933	chr1:4666933:C:T	rs114168592	C	T	c	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	4666964	4666965	chr1:4666965:C:T	rs144096630	C	T	c	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	4666965	4666966	chr1:4666966:A:G	rs12137092	A	G	g	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	4703210	4703211	chr1:4703211:C:T	rs115951945	C	T	C	Hoxa9_MA0594.1	5	1	-	7.022605952173604	9.538749763970214	GCCGTGAATCA
chr1	4722180	4722181	chr1:4722181:G:A	rs79522089	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	4853082	4853083	chr1:4853083:C:T	rs6426439	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	4880798	4880799	chr1:4880799:G:A	rs116502771	G	A	G	Hoxa9_MA0594.1	7	1	-	6.982587615172259	5.064195495010838	GCCATCACTCA
chr1	4880824	4880825	chr1:4880825:G:A	rs12091403	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	5198495	5198496	chr1:5198496:T:C	rs2722782	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	5247705	5247706	chr1:5247706:C:T	rs6704207	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	5260147	5260148	chr1:5260148:G:C	rs644390	G	C	g	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	5333401	5333402	chr1:5333402:T:C	rs115658511	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	5455374	5455375	chr1:5455375:A:G	rs145694322	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	5518594	5518595	chr1:5518595:T:C	rs11260635	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	5531541	5531542	chr1:5531542:A:G	rs1342690	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	5639504	5639505	chr1:5639505:G:A	rs77859332	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	5656543	5656544	chr1:5656544:T:C	rs2488379	T	C	t	Hoxa9_MA0594.1	10	1	+	9.182953099595478	8.189387744188851	CTCATCAATCT
chr1	5721148	5721149	chr1:5721149:A:G	rs1875038	A	G	A	Hoxa9_MA0594.1	3	1	+	7.864522907426146	4.882726480017287	ACCATCCATCA
chr1	5870916	5870917	chr1:5870917:G:A	rs1287626	G	A	.	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	5964044	5964045	chr1:5964045:T:C	rs35357995	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	6046394	6046395	chr1:6046395:C:G	rs3789558	C	G	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	6198785	6198786	chr1:6198786:C:T	rs12065054	C	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	6256823	6256824	chr1:6256824:G:C	rs2057006	G	C	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	6256833	6256834	chr1:6256834:G:A	rs113555267	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	6523640	6523641	chr1:6523641:T:C	rs10158949	T	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	6645295	6645296	chr1:6645296:A:G	rs200457	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	6858783	6858784	chr1:6858784:G:A	rs181225513	G	A	g	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	6958658	6958659	chr1:6958659:A:G	rs11120797	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	7157586	7157587	chr1:7157587:A:G	rs75093343	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	7265920	7265921	chr1:7265921:G:C	rs10779680	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	7274679	7274680	chr1:7274680:C:T	rs4481876	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	7357350	7357351	chr1:7357351:T:C	rs2153862	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	7422985	7422986	chr1:7422986:C:A	rs845251	C	A	A	Hoxa9_MA0594.1	0	1	-	8.077400274154538	5.109398508167918	GCCATTAATCT
chr1	7520490	7520491	chr1:7520491:T:C	rs12239260	T	C	c	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	7643678	7643679	chr1:7643679:A:G	chr1:7643679:A:G	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	7685770	7685771	chr1:7685771:C:T	rs138864461	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	7797913	7797914	chr1:7797914:C:T	rs228685	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	7868291	7868292	chr1:7868292:G:C	rs753380	G	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	7965680	7965681	chr1:7965681:G:C	rs538167621	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	8091163	8091164	chr1:8091164:G:A	rs11121086	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	8285237	8285238	chr1:8285238:A:G	rs159632	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	8408643	8408644	chr1:8408644:C:T	rs546074142	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	8441634	8441635	chr1:8441635:C:T	rs72866066	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	8526043	8526044	chr1:8526044:C:T	rs151028640	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	8579054	8579055	chr1:8579055:C:G	rs913021981	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	8723150	8723151	chr1:8723151:T:C	chr1:8723151:T:C	T	C	T	Hoxa9_MA0594.1	8	1	+	8.729708420148697	1.856420370048808	GCCATCCATCA
chr1	8818593	8818594	chr1:8818594:A:C	rs1161508060	A	C	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	8822701	8822702	chr1:8822702:T:C	rs74050296	T	C	C	Hoxa9_MA0594.1	5	1	-	9.634354527964561	7.118210716167953	CCCATAAATCC
chr1	8898399	8898400	chr1:8898400:T:C	rs58097568	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	8900093	8900094	chr1:8900094:G:A	rs12034719	G	A	G	Hoxa9_MA0594.1	0	1	-	8.689816197693718	6.144850852485448	CTCATGAATCA
chr1	8930536	8930537	chr1:8930537:C:T	rs2765517	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	8930537	8930538	chr1:8930538:C:T	rs2765518	C	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	8938464	8938465	chr1:8938465:C:T	rs145276910	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	9038508	9038509	chr1:9038509:G:T	rs191194369	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	9084571	9084572	chr1:9084572:C:G	rs767994344	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	9110793	9110794	chr1:9110794:A:G	rs548678748	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	9200840	9200841	chr1:9200841:A:C	rs743973	A	C	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	9289222	9289223	chr1:9289223:A:C	rs186459348	A	C	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	9389039	9389040	chr1:9389040:A:G	rs9659656	A	G	G	Hoxa9_MA0594.1	8	1	-	10.185770791426988	3.312482741327099	ACCATAAATCT
chr1	9412989	9412990	chr1:9412990:G:A	rs74051673	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	9413020	9413021	chr1:9413021:T:C	chr1:9413021:T:C	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	9453106	9453107	chr1:9453107:G:A	rs9662976	G	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	9775558	9775559	chr1:9775559:A:C	rs4845976	A	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	9784620	9784621	chr1:9784621:T:C	rs541555580	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	10034701	10034702	chr1:10034702:A:G	rs190266680	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	10651972	10651973	chr1:10651973:G:T	rs116332973	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	10651973	10651974	chr1:10651974:C:A	rs115582667	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	10704688	10704689	chr1:10704689:C:T	rs114813299	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	10704701	10704702	chr1:10704702:G:A	rs112143802	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	10736808	10736809	chr1:10736809:T:C	rs880315	T	C	T	Hoxa9_MA0594.1	4	1	+	7.185134028456644	0.27637924914142475	CCAATCCATCA
chr1	10827865	10827866	chr1:10827866:C:T	rs539790	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	10890668	10890669	chr1:10890669:C:G	rs7536814	C	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	10941366	10941367	chr1:10941367:G:A	rs59494995	G	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	10941396	10941397	chr1:10941397:A:G	rs112279349	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	10974087	10974088	chr1:10974088:T:C	rs12081176	T	C	C	Hoxa9_MA0594.1	10	1	-	7.7868232361530945	1.1500502504003256	GGAATCAATCA
chr1	10974107	10974108	chr1:10974108:T:G	rs12081181	T	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	11067806	11067807	chr1:11067807:G:A	rs577050063	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	11067813	11067814	chr1:11067814:A:G	rs2791658	A	G	G	Hoxa9_MA0594.1	4	1	-	9.283125442814011	2.374370663498791	GCCATACATCA
chr1	11107771	11107772	chr1:11107772:C:T	rs12117241	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	11337794	11337795	chr1:11337795:G:A	rs12060190	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	11342431	11342432	chr1:11342432:A:C	rs954491088	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	11460058	11460059	chr1:11460059:C:T	rs7551815	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	11496290	11496291	chr1:11496291:A:G	rs10864512	A	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	11665045	11665046	chr1:11665046:T:G	rs72638621	T	G	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	11684302	11684303	chr1:11684303:T:A	rs67654234	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	11690750	11690751	chr1:11690751:T:C	rs187167566	T	C	T	Hoxa9_MA0594.1	6	1	-	7.1129682170592226	0.2953674313035668	CCCATAACTCA
chr1	11838072	11838073	chr1:11838073:T:A	rs198408	T	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	11868761	11868762	chr1:11868762:T:C	rs11801879	T	C	T	Hoxa9_MA0594.1	3	1	-	8.260841894848062	5.279045467439203	ACCATCTATCA
chr1	11868772	11868773	chr1:11868773:T:C	rs1009591	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	11909876	11909877	chr1:11909877:T:C	rs148742724	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	11909878	11909879	chr1:11909879:T:C	rs115644784	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	11909880	11909881	chr1:11909881:T:C	rs142300434	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	11909882	11909883	chr1:11909883:G:A	rs74052374	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	11909889	11909890	chr1:11909890:G:A	rs140472953	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	11909891	11909892	chr1:11909892:G:A	rs145648709	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	12084604	12084605	chr1:12084605:T:A	rs11569821	T	A	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	12084609	12084610	chr1:12084610:C:T	rs11569822	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	12435964	12435965	chr1:12435965:T:C	rs6541023	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	12580052	12580053	chr1:12580053:T:C	rs12128227	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	12595511	12595512	chr1:12595512:A:G	rs71509077	A	G	a	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	13231625	13231626	chr1:13231626:C:T	rs564001048	C	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	13564699	13564700	chr1:13564700:T:G	rs140627823	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	13704547	13704548	chr1:13704548:T:G	rs3806425	T	G	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	13728407	13728408	chr1:13728408:A:G	rs10489152	A	G	G	Hoxa9_MA0594.1	7	1	+	8.11177607157458	1.208842397871659	CCCATGAATCT
chr1	13929482	13929483	chr1:13929483:T:G	rs7538374	T	G	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	14262793	14262794	chr1:14262794:C:T	rs774003296	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	14419898	14419899	chr1:14419899:G:A	rs535008170	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	14419910	14419911	chr1:14419911:T:C	rs79414274	T	C	T	Hoxa9_MA0594.1	7	1	-	8.93585297782921	2.03291930412629	GCAATAAATCC
chr1	14487072	14487073	chr1:14487073:G:A	rs188629624	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	14811341	14811342	chr1:14811342:A:G	rs74059396	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	14869940	14869941	chr1:14869941:C:G	rs2690019	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	14925562	14925563	chr1:14925563:A:G	rs147702220	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	15011738	15011739	chr1:15011739:C:T	rs72639822	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	15161663	15161664	chr1:15161664:C:A	rs12041096	C	A	c	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	15187663	15187664	chr1:15187664:A:G	rs10927706	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	15226178	15226179	chr1:15226179:A:G	rs12125223	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	15246940	15246941	chr1:15246941:C:T	rs774506165	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	15435211	15435212	chr1:15435212:A:T	chr1:15435212:A:T	A	T	A	Hoxa9_MA0594.1	7	1	+	7.747238652244652	0.844304978541732	ATCATCAATCC
chr1	15542788	15542789	chr1:15542789:G:A	rs12736181	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	15662382	15662383	chr1:15662383:A:G	rs41270279	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	15700802	15700803	chr1:15700803:C:T	rs16851962	C	T	C	Hoxa9_MA0594.1	0	1	-	8.34024025881841	7.475054746095858	GGAATAAATCA
chr1	15886958	15886959	chr1:15886959:G:T	rs186919541	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	16091127	16091128	chr1:16091128:A:G	rs28441102	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	16386534	16386535	chr1:16386535:G:C	rs74055648	G	C	G	Hoxa9_MA0594.1	5	1	-	9.376001310570523	7.413274521439227	GCAATCAATCT
chr1	16420939	16420940	chr1:16420940:C:T	rs189506774	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	16519104	16519105	chr1:16519105:G:A	rs156912	G	A	.	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	16617734	16617735	chr1:16617735:C:A	rs1762935	C	A	.	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	16771168	16771169	chr1:16771169:G:A	rs2803029	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	17066455	17066456	chr1:17066456:C:T	rs2746534	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	17167451	17167452	chr1:17167452:T:C	rs2501811	T	C	C	Hoxa9_MA0594.1	10	1	-	8.843479834418904	2.2067068486661343	ATTATAAATCA
chr1	17183742	17183743	chr1:17183743:A:G	rs2977232	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	17672329	17672330	chr1:17672330:C:G	rs186952122	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	17691169	17691170	chr1:17691170:A:G	rs772385384	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	17733768	17733769	chr1:17733769:C:T	rs11584149	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	17735970	17735971	chr1:17735971:T:A	rs912101	T	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	17806269	17806270	chr1:17806270:G:T	rs634658	G	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	17835242	17835243	chr1:17835243:G:C	rs6586587	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	17846503	17846504	chr1:17846504:G:T	rs58538859	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	17908196	17908197	chr1:17908197:C:T	rs11203230	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	17929605	17929606	chr1:17929606:G:T	rs1416950	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	18120098	18120099	chr1:18120099:C:T	rs61765733	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	18321366	18321367	chr1:18321367:T:C	rs223216	T	C	C	Hoxa9_MA0594.1	7	1	-	9.980405685077507	3.0774720113745864	ACAATCAATCA
chr1	18377177	18377178	chr1:18377178:G:A	rs2271861	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	18531613	18531614	chr1:18531614:T:C	rs2816034	T	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	18541698	18541699	chr1:18541699:T:A	rs11261030	T	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	18676372	18676373	chr1:18676373:G:A	rs2236829	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	18998038	18998039	chr1:18998039:C:T	rs28571899	C	T	C	Hoxa9_MA0594.1	2	1	+	8.477230437406968	6.556899354279747	ACCATCAATTA
chr1	19070734	19070735	chr1:19070735:A:G	rs72649592	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	19080822	19080823	chr1:19080823:T:C	rs79103880	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	19081885	19081886	chr1:19081886:T:C	rs12164540	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	19875859	19875860	chr1:19875860:T:C	rs12403770	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	19917416	19917417	chr1:19917417:A:G	rs57513643	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	19920811	19920812	chr1:19920812:G:A	rs116816676	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	19926846	19926847	chr1:19926847:G:A	rs55740298	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	19973861	19973862	chr1:19973862:G:A	rs11573183	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	19982278	19982279	chr1:19982279:G:A	chr1:19982279:G:A	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	20410370	20410371	chr1:20410371:C:A	rs12131811	C	A	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	20508434	20508435	chr1:20508435:C:G	rs145588626	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	20589534	20589535	chr1:20589535:G:A	rs116157205	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	20956330	20956331	chr1:20956331:G:A	rs36082446	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	20982339	20982340	chr1:20982340:A:G	rs141252735	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	21089941	21089942	chr1:21089942:G:T	rs960564	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	21162116	21162117	chr1:21162117:G:A	rs6671056	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	21321646	21321647	chr1:21321647:G:A	rs146565004	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	21542056	21542057	chr1:21542057:A:C	rs539472305	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	21767901	21767902	chr1:21767902:A:G	rs111496248	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	21897608	21897609	chr1:21897609:A:G	rs11810496	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	22108423	22108424	chr1:22108424:A:G	chr1:22108424:A:G	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	22218066	22218067	chr1:22218067:C:G	rs138407610	C	G	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	22252330	22252331	chr1:22252331:G:A	rs2473272	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	22324052	22324053	chr1:22324053:C:T	rs16826920	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	22342277	22342278	chr1:22342278:C:T	rs4655048	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	22662503	22662504	chr1:22662504:G:A	rs1014080220	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	22756587	22756588	chr1:22756588:G:C	rs575757968	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	22819905	22819906	chr1:22819906:A:C	rs6659914	A	C	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	22848616	22848617	chr1:22848617:G:A	rs74061052	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	23177666	23177667	chr1:23177667:C:A	rs962986492	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	23450344	23450345	chr1:23450345:C:T	rs146443848	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	24009550	24009551	chr1:24009551:T:A	rs2501376	T	A	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	24009598	24009599	chr1:24009599:T:C	rs2501377	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	24201902	24201903	chr1:24201903:A:G	rs6667221	A	G	G	Hoxa9_MA0594.1	0	1	+	8.034113823095115	8.899299335817666	ACCATCAATAA
chr1	24201919	24201920	chr1:24201920:C:T	chr1:24201920:C:T	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	24203755	24203756	chr1:24203756:C:G	rs17184658	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	24264279	24264280	chr1:24264280:C:G	rs6700959	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	24311080	24311081	chr1:24311081:G:A	rs56144841	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	24329089	24329090	chr1:24329090:A:G	rs72878812	A	G	A	Hoxa9_MA0594.1	2	1	-	10.60021510825185	12.520546191379072	GCTATAAATCA
chr1	24432938	24432939	chr1:24432939:G:A	rs926460	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	24451969	24451970	chr1:24451970:C:T	rs139466678	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	24514277	24514278	chr1:24514278:G:A	rs196403	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	24541290	24541291	chr1:24541291:G:T	rs196423	G	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	24722369	24722370	chr1:24722370:C:T	rs112616775	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	24889539	24889540	chr1:24889540:A:G	rs7513064	A	G	A	Hoxa9_MA0594.1	6	1	+	10.185770791426988	3.3681700056713315	ACCATAAATCT
chr1	24889554	24889555	chr1:24889555:A:G	rs7513066	A	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	24894049	24894050	chr1:24894050:T:G	rs9438856	T	G	T	Hoxa9_MA0594.1	7	1	-	7.700782005789437	2.7162404522479378	GTCCTAAATCA
chr1	24991733	24991734	chr1:24991734:G:T	rs186127900	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	25004462	25004463	chr1:25004463:T:C	rs311468	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	25641282	25641283	chr1:25641283:A:G	rs3767909	A	G	a	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	25660030	25660031	chr1:25660031:T:C	rs2982309	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	25771416	25771417	chr1:25771417:C:T	rs142949994	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	25843659	25843660	chr1:25843660:C:T	rs169934	C	T	c	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	26372130	26372131	chr1:26372131:G:C	rs11247935	G	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	26375361	26375362	chr1:26375362:C:G	rs4659438	C	G	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	26427450	26427451	chr1:26427451:T:C	rs3811463	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	26740925	26740926	chr1:26740926:G:A	rs11247594	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	27357904	27357905	chr1:27357905:G:A	rs4970520	G	A	G	Hoxa9_MA0594.1	3	1	-	7.147364983124122	4.2328427649956755	GTCCTCAATCA
chr1	27460180	27460181	chr1:27460181:C:A	rs6691276	C	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	27637198	27637199	chr1:27637199:T:C	rs115856517	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	27672184	27672185	chr1:27672185:G:A	rs757492817	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	27672192	27672193	chr1:27672193:G:C	rs113765816	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	27962676	27962677	chr1:27962677:G:A	rs6598914	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	28032291	28032292	chr1:28032292:T:A	rs12119494	T	A	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	28056555	28056556	chr1:28056556:A:G	rs12406786	A	G	A	Hoxa9_MA0594.1	10	1	+	9.461778229732111	2.8250052439793425	GGCATAAATCA
chr1	28066131	28066132	chr1:28066132:T:C	rs919321352	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	28096971	28096972	chr1:28096972:C:T	rs11582538	C	T	c	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	28246938	28246939	chr1:28246939:G:A	rs373466489	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	28251873	28251874	chr1:28251874:C:T	rs150995894	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	28297305	28297306	chr1:28297306:G:A	rs10127666	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	28392189	28392190	chr1:28392190:C:G	rs6694681	C	G	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	28456237	28456238	chr1:28456238:C:G	rs116453326	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	28904197	28904198	chr1:28904198:T:A	rs157233	T	A	t	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	29050314	29050315	chr1:29050315:A:G	rs569977197	A	G	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	29147118	29147119	chr1:29147119:G:A	rs114296365	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	29686889	29686890	chr1:29686890:C:T	rs56205785	C	T	.	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	29753641	29753642	chr1:29753642:T:C	rs35248904	T	C	.	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	29753684	29753685	chr1:29753685:C:T	rs17341169	C	T	.	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	29782699	29782700	chr1:29782700:T:C	rs16832903	T	C	.	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	29903844	29903845	chr1:29903845:T:C	rs4949516	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	30173138	30173139	chr1:30173139:T:C	rs10493043	T	C	T	Hoxa9_MA0594.1	7	1	-	10.422554777021706	3.5196211033187854	CCAATCAATCA
chr1	30186589	30186590	chr1:30186590:C:T	rs6425879	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	30199091	30199092	chr1:30199092:G:A	rs138282572	G	A	G	Hoxa9_MA0594.1	3	1	+	7.670746559416154	10.652542986825011	CTCGTCAATCA
chr1	30199105	30199106	chr1:30199106:G:A	rs6676528	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	30207709	30207710	chr1:30207710:C:T	rs12405559	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	30214339	30214340	chr1:30214340:G:A	rs16833399	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	30396497	30396498	chr1:30396498:C:T	rs146149626	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	30687630	30687631	chr1:30687631:T:C	rs1188449	T	C	T	Hoxa9_MA0594.1	8	1	+	11.544092747935409	4.670804697835519	CCCATCAATCA
chr1	30860175	30860176	chr1:30860176:G:A	rs41269501	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	30872927	30872928	chr1:30872928:C:T	rs149951167	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	30872937	30872938	chr1:30872938:T:A	rs12757735	T	A	T	Hoxa9_MA0594.1	8	1	+	6.837082112140813	3.3673220590413604	CCCATCCATCT
chr1	30885939	30885940	chr1:30885940:G:A	rs72657252	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	31224436	31224437	chr1:31224437:A:G	rs2377732	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	31352970	31352971	chr1:31352971:C:T	rs6696452	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	31422509	31422510	chr1:31422510:A:T	rs12078794	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	31422537	31422538	chr1:31422538:A:G	rs961586295	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	31429570	31429571	chr1:31429571:A:G	rs10047085	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	31499630	31499631	chr1:31499631:G:A	rs955306969	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	31714565	31714566	chr1:31714566:A:T	rs55634335	A	T	A	Hoxa9_MA0594.1	2	1	+	8.773111023127315	7.974317910913794	CAAATAAATCA
chr1	31782628	31782629	chr1:31782629:C:G	rs79470841	C	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	32441336	32441337	chr1:32441337:G:T	rs114288963	G	T	g	Hoxa9_MA0594.1	9	1	-	9.634354527964561	6.56652469506847	CCCATAAATCC
chr1	32630580	32630581	chr1:32630581:A:C	rs7540466	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	32872604	32872605	chr1:32872605:C:G	chr1:32872605:C:G	C	G	C	Hoxa9_MA0594.1	0	1	+	8.306671999370346	8.729708420148697	CCCATCCATCA
chr1	32949061	32949062	chr1:32949062:T:C	rs67811792	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	33221194	33221195	chr1:33221195:C:T	rs1391522	C	T	T	Hoxa9_MA0594.1	1	1	+	7.160606422172025	6.269056661061629	CCTATCAATCC
chr1	33285473	33285474	chr1:33285474:A:G	rs12736971	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	33285501	33285502	chr1:33285502:T:A	rs7526544	T	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	33443875	33443876	chr1:33443876:A:G	rs7519108	A	G	G	Hoxa9_MA0594.1	1	1	-	8.159236377169226	9.050786138279621	GTCATAAAACA
chr1	33815068	33815069	chr1:33815069:G:A	rs544689687	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	33829272	33829273	chr1:33829273:T:C	rs10914789	T	C	C	Hoxa9_MA0594.1	3	1	-	11.544092747935409	8.56229632052655	CCCATCAATCA
chr1	33930654	33930655	chr1:33930655:A:G	rs10799010	A	G	G	Hoxa9_MA0594.1	7	1	+	11.205960009490326	4.303026335787407	CTCATAAATCA
chr1	33954880	33954881	chr1:33954881:T:C	rs539368	T	C	T	Hoxa9_MA0594.1	7	1	-	7.260118532919163	0.35718485921624316	GCCATCCATCT
chr1	34071465	34071466	chr1:34071466:G:C	rs1351204	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	34283152	34283153	chr1:34283153:C:A	rs9661105	C	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	34357958	34357959	chr1:34357959:A:G	rs2049420	A	G	A	Hoxa9_MA0594.1	7	1	+	10.652542986825011	3.7496093131220922	CTCATCAATCA
chr1	34363509	34363510	chr1:34363510:T:C	rs74770393	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	34416517	34416518	chr1:34416518:C:G	rs12116584	C	G	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	34652538	34652539	chr1:34652539:C:A	rs6425908	C	A	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	34694760	34694761	chr1:34694761:A:G	rs12030068	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	34770470	34770471	chr1:34770471:A:G	rs79930844	A	G	A	Hoxa9_MA0594.1	3	1	+	7.959399534385545	4.977603106976686	CCAATCAATCC
chr1	34770481	34770482	chr1:34770482:G:A	rs67672510	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	34975153	34975154	chr1:34975154:A:G	rs10158282	A	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	35193675	35193676	chr1:35193676:G:A	rs74555407	G	A	G	Hoxa9_MA0594.1	9	1	-	9.064232820513286	6.439519601929048	ACAATAAATCT
chr1	35288923	35288924	chr1:35288924:T:A	rs12059022	T	A	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	35506244	35506245	chr1:35506245:G:A	rs150204348	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	36108587	36108588	chr1:36108588:C:A	rs115197883	C	A	c	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	36159828	36159829	chr1:36159829:G:C	rs76032355	G	C	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	36227604	36227605	chr1:36227605:G:A	rs573361596	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	36585818	36585819	chr1:36585819:T:C	rs750829	T	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	36678130	36678131	chr1:36678131:C:T	rs1395457	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	36696750	36696751	chr1:36696751:A:G	rs589249	A	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	36709171	36709172	chr1:36709172:A:G	rs4652921	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	36755911	36755912	chr1:36755912:G:T	rs61771398	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	37037914	37037915	chr1:37037915:C:G	rs79417498	C	G	c	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	37037932	37037933	chr1:37037933:G:A	rs114197184	G	A	G	Hoxa9_MA0594.1	10	1	-	8.742804766854166	9.736370122260793	CTCATAAATCC
chr1	37151410	37151411	chr1:37151411:G:A	rs215785	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	37234448	37234449	chr1:37234449:G:A	rs12043017	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	37240995	37240996	chr1:37240996:T:C	rs79736857	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	37287105	37287106	chr1:37287106:G:A	rs12041233	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	37361155	37361156	chr1:37361156:C:T	rs12119148	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	37406383	37406384	chr1:37406384:C:T	rs2811620	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	37406455	37406456	chr1:37406456:G:A	rs2745475	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	37478539	37478540	chr1:37478540:G:A	rs114592057	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	37526600	37526601	chr1:37526601:T:C	rs72657782	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	37692087	37692088	chr1:37692088:A:C	rs1204235992	A	C	A	Hoxa9_MA0594.1	2	1	+	7.440758349612847	8.56229632052655	CCAGTCAATCA
chr1	37697259	37697260	chr1:37697260:C:T	rs60258705	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	37928184	37928185	chr1:37928185:T:C	rs78884460	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	38030200	38030201	chr1:38030201:G:C	rs770016346	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	38213873	38213874	chr1:38213874:C:G	rs16824769	C	G	C	Hoxa9_MA0594.1	9	1	+	8.577208198357003	1.7788772366561554	GCTATCAATCT
chr1	38247007	38247008	chr1:38247008:C:T	rs79233649	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	38247806	38247807	chr1:38247807:A:G	rs4970577	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	38339658	38339659	chr1:38339659:A:T	rs66577509	A	T	A	Hoxa9_MA0594.1	8	1	-	8.294678504924521	4.824918451825068	GACATCAATCT
chr1	38370513	38370514	chr1:38370514:A:G	rs2798798	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	38786731	38786732	chr1:38786732:T:C	rs1005766534	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	38816263	38816264	chr1:38816264:G:A	rs78189457	G	A	g	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	38818761	38818762	chr1:38818762:T:C	rs77768193	T	C	t	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	39145148	39145149	chr1:39145149:G:C	rs114911343	G	C	G	Hoxa9_MA0594.1	0	1	-	9.736370122260793	10.159406543039145	CTCATAAATCT
chr1	39184096	39184097	chr1:39184097:A:G	rs35443599	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	39359045	39359046	chr1:39359046:C:G	rs2256614	C	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	39453561	39453562	chr1:39453562:A:G	rs687848	A	G	A	Hoxa9_MA0594.1	3	1	+	9.45271635848298	6.470919931074123	GCCATAAATAA
chr1	39567086	39567087	chr1:39567087:T:C	rs145838093	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	39632602	39632603	chr1:39632603:T:C	rs376987120	T	C	T	Hoxa9_MA0594.1	3	1	-	7.541247136946303	4.559450709537444	GCCATGAATCC
chr1	39777369	39777370	chr1:39777370:T:C	rs2248992	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	39777383	39777384	chr1:39777384:A:C	rs77780275	A	C	A	Hoxa9_MA0594.1	0	1	+	8.247667105749517	8.689816197693718	ATCATGAATCA
chr1	39892834	39892835	chr1:39892835:A:G	rs193236481	A	G	A	Hoxa9_MA0594.1	3	1	+	11.075579407603364	8.093782980194504	GTCATCAATCA
chr1	40065421	40065422	chr1:40065422:A:G	rs16826852	A	G	A	Hoxa9_MA0594.1	3	1	+	8.107577641616745	5.125781214207885	TTCATCAATCA
chr1	40161938	40161939	chr1:40161939:C:T	rs548241176	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	40338873	40338874	chr1:40338874:T:G	chr1:40338874:T:G	T	G	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	40385696	40385697	chr1:40385697:C:T	rs76716252	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	40385731	40385732	chr1:40385732:C:A	chr1:40385732:C:A	C	A	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	40629756	40629757	chr1:40629757:C:T	rs572577723	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	40862971	40862972	chr1:40862972:G:A	rs41268099	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	40981687	40981688	chr1:40981688:A:G	rs540143177	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	40981693	40981694	chr1:40981694:G:A	rs16827810	G	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	41109078	41109079	chr1:41109079:T:C	rs141664747	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	41353003	41353004	chr1:41353004:T:C	rs6660265	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	41421234	41421235	chr1:41421235:A:G	rs79063722	A	G	A	Hoxa9_MA0594.1	7	1	+	9.08885592396711	2.18592225026419	ATAATCAATCA
chr1	41538950	41538951	chr1:41538951:G:A	rs151028532	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	41626233	41626234	chr1:41626234:G:A	rs77522909	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	41742235	41742236	chr1:41742236:G:A	rs12143091	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	41758757	41758758	chr1:41758758:G:A	rs146917577	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	41758785	41758786	chr1:41758786:G:C	rs11210521	G	C	G	Hoxa9_MA0594.1	0	1	-	8.219694000462	8.642730421240351	CAAATCAATCA
chr1	41814582	41814583	chr1:41814583:G:A	rs6670547	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	41891140	41891141	chr1:41891141:A:C	rs12059980	A	C	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	41898294	41898295	chr1:41898295:G:A	rs1886729	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	42222765	42222766	chr1:42222766:C:T	chr1:42222766:C:T	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	42307319	42307320	chr1:42307320:T:G	rs36043301	T	G	G	Hoxa9_MA0594.1	1	1	+	10.210393894880813	8.043175694344246	ATCATCAATCA
chr1	42887222	42887223	chr1:42887223:C:T	rs6600427	C	T	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	42937329	42937330	chr1:42937330:G:C	rs142471809	G	C	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	42953481	42953482	chr1:42953482:A:T	rs1017454043	A	T	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	43275552	43275553	chr1:43275553:G:A	rs2151673	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	43648766	43648767	chr1:43648767:C:A	rs72883038	C	A	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	43799983	43799984	chr1:43799984:T:C	rs3791055	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	43979990	43979991	chr1:43979991:G:C	rs145774542	G	C	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	43979994	43979995	chr1:43979995:T:C	rs3762423	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	44519248	44519249	chr1:44519249:G:A	rs12728804	G	A	G	Hoxa9_MA0594.1	0	1	+	8.655440400273676	7.790254887551124	GTCATTAATCA
chr1	44519259	44519260	chr1:44519260:A:G	rs12749754	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	44572073	44572074	chr1:44572074:A:C	rs115665405	A	C	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	44588087	44588088	chr1:44588088:G:T	rs928685	G	T	G	Hoxa9_MA0594.1	5	1	+	9.581365958804113	9.123953740605721	CCCATGAATCA
chr1	44598400	44598401	chr1:44598401:T:C	rs144904689	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	44645793	44645794	chr1:44645794:G:C	rs117455890	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	44646441	44646442	chr1:44646442:G:A	rs3768441	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	44819947	44819948	chr1:44819948:C:T	rs192524658	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	44819949	44819950	chr1:44819950:T:C	rs148551547	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	44819951	44819952	chr1:44819952:A:G	rs115827181	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	44819958	44819959	chr1:44819959:G:A	rs74485107	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	44819965	44819966	chr1:44819966:G:A	rs141950484	G	A	G	Hoxa9_MA0594.1	9	1	-	7.569151921724227	4.944438703139989	CGCATAAATCT
chr1	44819965	44819966	chr1:44819966:G:T	chr1:44819966:G:T	G	T	G	Hoxa9_MA0594.1	9	1	-	7.569151921724227	4.501322088828136	CGCATAAATCT
chr1	44819967	44819968	chr1:44819968:T:G	rs188051405	T	G	T	Hoxa9_MA0594.1	7	1	-	7.569151921724227	2.584610368182728	CGCATAAATCT
chr1	44819969	44819970	chr1:44819970:T:C	rs544685386	T	C	T	Hoxa9_MA0594.1	5	1	-	7.569151921724227	5.053008109927617	CGCATAAATCT
chr1	44819971	44819972	chr1:44819972:T:C	rs79027712	T	C	T	Hoxa9_MA0594.1	3	1	-	7.569151921724227	4.587355494315369	CGCATAAATCT
chr1	44819973	44819974	chr1:44819974:C:G	rs150681043	C	G	C	Hoxa9_MA0594.1	1	1	-	7.569151921724227	10.627919883371188	CGCATAAATCT
chr1	44819975	44819976	chr1:44819976:C:T	rs41269085	C	T	t	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	44819984	44819985	chr1:44819985:G:A	rs12132510	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	44819991	44819992	chr1:44819992:G:A	rs12036829	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	44905487	44905488	chr1:44905488:G:A	rs12093313	G	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	45411639	45411640	chr1:45411640:C:T	rs555719377	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	46245068	46245069	chr1:46245069:A:G	rs115332178	A	G	A	Hoxa9_MA0594.1	7	1	+	8.219694000462	1.3167603267590802	CAAATCAATCA
chr1	46497895	46497896	chr1:46497896:C:T	rs11211293	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	46788800	46788801	chr1:46788801:A:G	rs7525410	A	G	g	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	47129262	47129263	chr1:47129263:C:A	rs12564103	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	47196754	47196755	chr1:47196755:A:G	rs4926513	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	47488084	47488085	chr1:47488085:A:G	rs11578572	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	47494184	47494185	chr1:47494185:C:A	rs2152820	C	A	C	Hoxa9_MA0594.1	0	1	-	10.004402379582464	7.036400613595844	GCCATGAATCA
chr1	47578259	47578260	chr1:47578260:C:T	rs74856158	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	47685501	47685502	chr1:47685502:C:T	rs76748944	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	47746942	47746943	chr1:47746943:T:C	rs10789515	T	C	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	47845101	47845102	chr1:47845102:G:A	rs114225877	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	47911829	47911830	chr1:47911830:T:G	rs116144490	T	G	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	47948263	47948264	chr1:47948264:G:T	rs188555827	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	47948264	47948265	chr1:47948265:A:T	rs181498782	A	T	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	47948271	47948272	chr1:47948272:T:C	chr1:47948272:T:C	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	48047472	48047473	chr1:48047473:T:C	rs823389	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	48421055	48421056	chr1:48421056:G:A	rs78939745	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	48731352	48731353	chr1:48731353:T:C	rs1335333639	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	50950527	50950528	chr1:50950528:G:C	rs927175649	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	51093717	51093718	chr1:51093718:A:T	rs76894965	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	51261266	51261267	chr1:51261267:T:G	rs34653975	T	G	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	51737898	51737899	chr1:51737899:G:A	rs77083641	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	52670114	52670115	chr1:52670115:G:A	rs269317	G	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	52727329	52727330	chr1:52727330:C:G	rs112713636	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	53136028	53136029	chr1:53136029:A:G	rs11206107	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	53141331	53141332	chr1:53141332:C:T	rs12738223	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	53336782	53336783	chr1:53336783:A:G	rs12071526	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	53410476	53410477	chr1:53410477:G:T	rs1342970	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	53500831	53500832	chr1:53500832:G:A	rs75569259	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	53583806	53583807	chr1:53583807:A:G	rs3006887	A	G	a	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	53599849	53599850	chr1:53599850:T:C	rs12120383	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	53601428	53601429	chr1:53601429:C:T	rs11206178	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	53640994	53640995	chr1:53640995:G:C	rs17383010	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	53641031	53641032	chr1:53641032:T:G	rs17387150	T	G	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	54003553	54003554	chr1:54003554:A:G	rs635509	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	54115162	54115163	chr1:54115163:G:A	rs114028928	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	54273186	54273187	chr1:54273187:G:A	rs574654589	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	54273197	54273198	chr1:54273198:T:A	rs3766423	T	A	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	54287733	54287734	chr1:54287734:G:A	rs1361312	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	54489847	54489848	chr1:54489848:A:G	rs34964406	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	54799587	54799588	chr1:54799588:G:A	rs72671841	G	A	g	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	54799594	54799595	chr1:54799595:T:C	rs12123513	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	54809956	54809957	chr1:54809957:G:C	rs12068840	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	54842019	54842020	chr1:54842020:C:A	rs17111100	C	A	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	54844942	54844943	chr1:54844943:C:T	rs11580133	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	54937069	54937070	chr1:54937070:T:C	rs623619	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	54937094	54937095	chr1:54937095:A:G	rs582781	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	54963551	54963552	chr1:54963552:T:C	rs2317945	T	C	T	Hoxa9_MA0594.1	7	1	-	10.627919883371188	3.7249862096682684	CCCATAAATCT
chr1	54966259	54966260	chr1:54966260:T:C	rs12043403	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	55191407	55191408	chr1:55191408:T:G	rs143276314	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	55514931	55514932	chr1:55514932:T:C	rs17112260	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	55581163	55581164	chr1:55581164:C:T	rs78577473	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	55581197	55581198	chr1:55581198:T:C	rs41297893	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	55695756	55695757	chr1:55695757:G:A	rs1849680	G	A	G	Hoxa9_MA0594.1	0	1	-	7.415122238259951	4.870156893051682	CTCATCCATCA
chr1	55718904	55718905	chr1:55718905:G:A	rs17112706	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	55750220	55750221	chr1:55750221:T:C	rs58551970	T	C	T	Hoxa9_MA0594.1	7	1	-	8.027829768240773	1.1248960945378537	CTCATCAATTA
chr1	55750231	55750232	chr1:55750232:G:A	rs74961535	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	56098961	56098962	chr1:56098962:C:T	rs112545069	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	56099100	56099101	chr1:56099101:G:A	rs939524745	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	56153543	56153544	chr1:56153544:C:T	rs17113399	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	56220370	56220371	chr1:56220371:C:T	rs72677404	C	T	C	Hoxa9_MA0594.1	10	1	+	9.19220543602036	10.185770791426988	ACCATAAATCC
chr1	56223361	56223362	chr1:56223362:T:C	rs706371	T	C	T	Hoxa9_MA0594.1	10	1	-	8.219694000462	1.582921014709231	CAAATCAATCA
chr1	56330742	56330743	chr1:56330743:A:G	rs9787125	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	56338630	56338631	chr1:56338631:A:C	rs72660491	A	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	56526743	56526744	chr1:56526744:A:G	rs6690245	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	56527714	56527715	chr1:56527715:A:C	rs554977026	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	56527731	56527732	chr1:56527732:T:C	chr1:56527732:T:C	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	56527742	56527743	chr1:56527743:G:C	rs1759752	G	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	56731582	56731583	chr1:56731583:T:G	rs75327084	T	G	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	56904916	56904917	chr1:56904917:A:C	rs17114550	A	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	56931627	56931628	chr1:56931628:G:A	rs683824	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	56968537	56968538	chr1:56968538:A:G	rs61767010	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	56968559	56968560	chr1:56968560:C:T	rs61767011	C	T	C	Hoxa9_MA0594.1	6	1	+	8.86008902203566	9.256408009457576	CCCATACATCA
chr1	57254607	57254608	chr1:57254608:C:T	rs197650	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	57393416	57393417	chr1:57393417:G:T	rs11207024	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	57393424	57393425	chr1:57393425:A:G	rs515148	A	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	57440372	57440373	chr1:57440373:C:T	rs12758741	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	57485907	57485908	chr1:57485908:T:C	rs2805878	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	57485915	57485916	chr1:57485916:G:T	rs59727725	G	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	57908417	57908418	chr1:57908418:G:A	rs1202799	G	A	.	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	58460722	58460723	chr1:58460723:G:T	rs12040053	G	T	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	58565802	58565803	chr1:58565803:T:A	rs12068457	T	A	T	Hoxa9_MA0594.1	6	1	-	8.294678504924521	5.453576743781373	GACATCAATCT
chr1	58566490	58566491	chr1:58566491:A:G	rs67443104	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	58659842	58659843	chr1:58659843:C:T	rs12737926	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	58763444	58763445	chr1:58763445:G:A	rs145783685	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	58853319	58853320	chr1:58853320:T:C	rs80165058	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	58853330	58853331	chr1:58853331:C:T	rs2984913	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	59000052	59000053	chr1:59000053:G:A	rs2716147	G	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	59017647	59017648	chr1:59017648:A:C	rs12030196	A	C	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	59112904	59112905	chr1:59112905:A:G	rs78581803	A	G	A	Hoxa9_MA0594.1	8	1	-	8.561166597372587	1.687878547272697	GTCATAAATAA
chr1	59112909	59112910	chr1:59112910:T:C	rs10493260	T	C	C	Hoxa9_MA0594.1	3	1	-	8.561166597372587	5.5793701699637275	GTCATAAATAA
chr1	59163849	59163850	chr1:59163850:G:A	rs579365	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	59163855	59163856	chr1:59163856:A:G	rs579340	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	59214831	59214832	chr1:59214832:C:T	rs181565282	C	T	C	Hoxa9_MA0594.1	2	1	+	7.64612345596233	5.725792372835108	CCCGTAAATCT
chr1	59597263	59597264	chr1:59597264:A:C	rs35123900	A	C	a	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	59646314	59646315	chr1:59646315:G:A	rs4522023	G	A	A	Hoxa9_MA0594.1	0	1	-	7.9172038380400585	5.37223849283179	CGAATAAATCA
chr1	59654288	59654289	chr1:59654289:T:C	rs10889148	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	59711788	59711789	chr1:59711789:C:T	rs186200246	C	T	C	Hoxa9_MA0594.1	2	1	+	9.581365958804113	7.66103487567689	CCCATGAATCA
chr1	59893309	59893310	chr1:59893310:T:C	rs2280273	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	59947350	59947351	chr1:59947351:G:A	rs946785112	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	59994764	59994765	chr1:59994765:C:G	rs12403818	C	G	C	Hoxa9_MA0594.1	0	1	-	8.729708420148697	8.306671999370346	GCCATCCATCA
chr1	59994770	59994771	chr1:59994771:C:T	rs10889167	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	60031626	60031627	chr1:60031627:C:T	rs35490593	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	60118272	60118273	chr1:60118273:C:A	rs78735044	C	A	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	60227968	60227969	chr1:60227969:G:T	rs1993815	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	60423326	60423327	chr1:60423327:T:G	rs7551363	T	G	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	60621736	60621737	chr1:60621737:G:C	chr1:60621737:G:C	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	60680497	60680498	chr1:60680498:C:A	rs484335	C	A	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	60741547	60741548	chr1:60741548:C:T	rs11207662	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	60976279	60976280	chr1:60976280:A:G	rs17121389	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	60999616	60999617	chr1:60999617:A:G	rs1283256	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	61005675	61005676	chr1:61005676:C:T	rs141910383	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	61085849	61085850	chr1:61085850:G:A	rs75395799	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	61370251	61370252	chr1:61370252:A:G	rs12568891	A	G	A	Hoxa9_MA0594.1	7	1	+	8.027829768240773	1.1248960945378537	CTCATCAATTA
chr1	61502627	61502628	chr1:61502628:G:A	rs534236098	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	61559546	61559547	chr1:61559547:G:A	rs12406226	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	61709867	61709868	chr1:61709868:C:A	rs1151771	C	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	61741581	61741582	chr1:61741582:A:G	rs7551399	A	G	G	Hoxa9_MA0594.1	3	1	+	9.980405685077507	6.9986092576686465	ACAATCAATCA
chr1	61841997	61841998	chr1:61841998:G:A	rs75765628	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	62026542	62026543	chr1:62026543:T:G	rs1332630	T	G	-	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	62105611	62105612	chr1:62105612:C:A	rs4915797	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	62308235	62308236	chr1:62308236:C:T	rs11207957	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	62359118	62359119	chr1:62359119:T:C	rs3861941	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	62691036	62691037	chr1:62691037:C:T	rs112752556	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	62830599	62830600	chr1:62830600:T:C	rs6679582	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	62875609	62875610	chr1:62875610:G:A	rs12061691	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	63030141	63030142	chr1:63030142:C:T	rs1330220	C	T	c	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	63073935	63073936	chr1:63073936:C:A	rs11809015	C	A	C	Hoxa9_MA0594.1	3	1	-	9.538749763970214	5.677809548771385	GCCGTAAATCA
chr1	63488375	63488376	chr1:63488376:G:T	rs12730416	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	63624990	63624991	chr1:63624991:A:G	rs2269258	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	64098166	64098167	chr1:64098167:C:G	rs942447	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	64323805	64323806	chr1:64323806:A:G	rs4915662	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	64470093	64470094	chr1:64470094:G:A	rs60790964	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	64470106	64470107	chr1:64470107:A:C	chr1:64470107:A:C	A	C	A	Hoxa9_MA0594.1	10	1	+	9.552544425392455	7.089389182756294	TCCATAAATCA
chr1	64470114	64470115	chr1:64470115:C:T	rs1021115817	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	64567928	64567929	chr1:64567929:C:T	rs7418605	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	64688136	64688137	chr1:64688137:T:C	rs74080497	T	C	T	Hoxa9_MA0594.1	8	1	+	7.6696269796303795	0.7963389295304895	ACCATGAATCT
chr1	64711648	64711649	chr1:64711649:G:T	rs17126915	G	T	G	Hoxa9_MA0594.1	0	1	-	8.91937952935117	8.477230437406968	CCCATCAATTA
chr1	64816224	64816225	chr1:64816225:G:A	rs928510	G	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	64841949	64841950	chr1:64841950:A:G	rs74080749	A	G	A	Hoxa9_MA0594.1	3	1	+	9.196147443905666	6.214351016496806	GAAATAAATCA
chr1	65151765	65151766	chr1:65151766:T:A	rs10889523	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	65222705	65222706	chr1:65222706:A:C	rs12022787	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	65236307	65236308	chr1:65236308:C:T	rs17127422	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	65297967	65297968	chr1:65297968:A:G	rs60304110	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	65868193	65868194	chr1:65868194:A:T	rs2840677	A	T	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	66259061	66259062	chr1:66259062:G:A	rs6668312	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	66270170	66270171	chr1:66270171:G:T	rs6688020	G	T	G	Hoxa9_MA0594.1	1	1	-	11.655360678656521	9.452499902096816	ACCATAAATCA
chr1	66284095	66284096	chr1:66284096:C:T	rs575056	C	T	C	Hoxa9_MA0594.1	0	1	-	9.708665347141455	8.843479834418904	GTTATAAATCA
chr1	66296782	66296783	chr1:66296783:T:C	rs546784	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	66504270	66504271	chr1:66504271:C:T	rs2121047	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	66504279	66504280	chr1:66504280:C:T	rs191292497	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	66593459	66593460	chr1:66593460:T:C	rs28439170	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	66633290	66633291	chr1:66633291:A:G	rs6701907	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	66634625	66634626	chr1:66634626:T:C	rs6696812	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	66762696	66762697	chr1:66762697:G:A	rs116942631	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	67337375	67337376	chr1:67337376:G:C	rs1995147	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	67525505	67525506	chr1:67525506:G:C	rs79204307	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	67764632	67764633	chr1:67764633:T:C	rs72684531	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	67766230	67766231	chr1:67766231:A:G	chr1:67766231:A:G	A	G	A	Hoxa9_MA0594.1	10	1	+	8.29006281175359	1.6532898260008206	ATTATCAATCA
chr1	67791613	67791614	chr1:67791614:C:G	rs529680549	C	G	C	Hoxa9_MA0594.1	2	1	+	11.544092747935409	5.020192760187068	CCCATCAATCA
chr1	67998047	67998048	chr1:67998048:A:G	rs57499162	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	67998051	67998052	chr1:67998052:C:T	rs58441381	C	T	C	Hoxa9_MA0594.1	2	1	+	8.077400274154538	6.157069191027315	GCCATTAATCT
chr1	68215245	68215246	chr1:68215246:C:T	rs989842	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	68491765	68491766	chr1:68491766:C:T	rs56725307	C	T	T	Hoxa9_MA0594.1	2	1	+	8.814258917513376	6.893927834386153	ACCATATATCA
chr1	68528651	68528652	chr1:68528652:C:A	rs1159579	C	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	68623771	68623772	chr1:68623772:G:T	rs2223699	G	T	G	Hoxa9_MA0594.1	1	1	-	8.774295001881132	6.571434225321426	GCAATAAATTA
chr1	69432760	69432761	chr1:69432761:G:C	rs7522980	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	69592099	69592100	chr1:69592100:G:A	rs10489549	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	69592563	69592564	chr1:69592564:A:C	rs60763622	A	C	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	69694642	69694643	chr1:69694643:C:T	rs11209522	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	69993970	69993971	chr1:69993971:A:G	rs12027422	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	70117437	70117438	chr1:70117438:T:C	rs17131218	T	C	T	Hoxa9_MA0594.1	7	1	-	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr1	70543108	70543109	chr1:70543109:G:C	rs673589	G	C	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	70553302	70553303	chr1:70553303:C:T	rs4233083	C	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	71033474	71033475	chr1:71033475:C:T	rs2300178	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	71043278	71043279	chr1:71043279:G:A	rs3000466	G	A	A	Hoxa9_MA0594.1	0	1	+	8.234477646460217	7.369292133737666	GTCATCTATCA
chr1	71108085	71108086	chr1:71108086:T:G	rs12116994	T	G	t	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	71208244	71208245	chr1:71208245:A:T	rs17090979	A	T	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	71494201	71494202	chr1:71494202:C:T	rs116915462	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	71823826	71823827	chr1:71823827:G:A	rs190791814	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	72062974	72062975	chr1:72062975:A:T	rs1486081	A	T	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	72284214	72284215	chr1:72284215:C:G	rs184538119	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	72539875	72539876	chr1:72539876:A:G	rs75290324	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	73519424	73519425	chr1:73519425:A:G	rs12133609	A	G	A	Hoxa9_MA0594.1	7	1	+	8.485324786288448	1.5823911125855274	CGCATCAATCA
chr1	73564765	73564766	chr1:73564766:C:A	rs10890049	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	73833048	73833049	chr1:73833049:T:C	rs17094450	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	73887159	73887160	chr1:73887160:C:T	rs72685810	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	74734093	74734094	chr1:74734094:C:A	rs367626723	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	75936126	75936127	chr1:75936127:A:G	rs1770887	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	75936145	75936146	chr1:75936146:G:C	rs1796812	G	C	G	Hoxa9_MA0594.1	9	1	-	7.7140234448373395	0.9156924831364923	CCTATAAATCC
chr1	76135620	76135621	chr1:76135621:C:A	rs289700	C	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	76261321	76261322	chr1:76261322:G:A	rs6593525	G	A	G	Hoxa9_MA0594.1	0	1	-	8.476262915039317	5.931297569831049	CCCATCAATAA
chr1	76389507	76389508	chr1:76389508:T:G	rs2031483	T	G	t	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	76576008	76576009	chr1:76576009:G:A	rs7513970	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	76623348	76623349	chr1:76623349:C:T	rs34741962	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	76990350	76990351	chr1:76990351:C:A	rs34981569	C	A	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	77148330	77148331	chr1:77148331:T:C	rs559199189	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	77219821	77219822	chr1:77219822:C:G	rs138857231	C	G	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	77672690	77672691	chr1:77672691:T:C	rs192779280	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	77731434	77731435	chr1:77731435:T:C	rs11578805	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	77837989	77837990	chr1:77837990:C:T	rs6666107	C	T	C	Hoxa9_MA0594.1	3	1	-	7.618418680842992	10.60021510825185	GCTGTAAATCA
chr1	77938170	77938171	chr1:77938171:T:A	rs1780047	T	A	T	Hoxa9_MA0594.1	10	1	+	8.952964889792172	10.422554777021706	CCAATCAATCT
chr1	77977001	77977002	chr1:77977002:C:G	rs72685367	C	G	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	78250304	78250305	chr1:78250305:T:C	rs12094932	T	C	C	Hoxa9_MA0594.1	6	1	-	6.982587615172259	0.1649868294166028	GCCATCACTCA
chr1	78250329	78250330	chr1:78250330:C:T	rs17101573	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	78254773	78254774	chr1:78254774:A:G	rs75085700	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	78291534	78291535	chr1:78291535:T:C	rs4512595	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	79041913	79041914	chr1:79041914:G:T	rs74726984	G	T	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	79085430	79085431	chr1:79085431:G:A	rs7537151	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	79128942	79128943	chr1:79128943:C:A	chr1:79128943:C:A	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	79499743	79499744	chr1:79499744:C:A	rs1494856	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	79539011	79539012	chr1:79539012:T:C	rs17453930	T	C	T	Hoxa9_MA0594.1	2	1	+	9.708665347141455	11.628996430268678	GTTATAAATCA
chr1	79560795	79560796	chr1:79560796:A:G	rs61766391	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	79647335	79647336	chr1:79647336:A:G	rs79765816	A	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	79743112	79743113	chr1:79743113:T:C	chr1:79743113:T:C	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	79833830	79833831	chr1:79833831:T:C	rs2118542	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	80014679	80014680	chr1:80014680:G:T	rs7518364	G	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	80258605	80258606	chr1:80258606:T:C	rs115945767	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	80634133	80634134	chr1:80634134:C:T	rs189609507	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	80853030	80853031	chr1:80853031:C:A	rs6689197	C	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	81151429	81151430	chr1:81151430:T:A	rs74854594	T	A	T	Hoxa9_MA0594.1	8	1	+	10.317685414819367	6.847925361719915	GACATAAATCA
chr1	81234464	81234465	chr1:81234465:T:G	rs12749881	T	G	T	Hoxa9_MA0594.1	4	1	+	8.561166597372587	1.6524118180573657	GTCATAAATAA
chr1	81313230	81313231	chr1:81313231:A:G	rs7555976	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	81407433	81407434	chr1:81407434:A:G	rs75296599	A	G	A	Hoxa9_MA0594.1	4	1	-	8.41793993009146	1.5091851507762404	ACCATACATCA
chr1	81755649	81755650	chr1:81755650:A:T	rs1498205	A	T	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	81830980	81830981	chr1:81830981:C:T	rs35134484	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	81892101	81892102	chr1:81892102:A:T	rs284214	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	82499213	82499214	chr1:82499214:A:T	rs7537124	A	T	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	82589001	82589002	chr1:82589002:T:C	rs10874321	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	82606666	82606667	chr1:82606667:C:T	rs1814136	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	82818878	82818879	chr1:82818879:A:G	rs563093	A	G	G	Hoxa9_MA0594.1	3	1	+	8.13705986561569	5.155263438206831	GCTATAAATCC
chr1	82819458	82819459	chr1:82819459:A:G	rs1923945	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	83113793	83113794	chr1:83113794:T:A	chr1:83113794:T:A	T	A	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	83113795	83113796	chr1:83113796:G:C	rs1338504	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	83624481	83624482	chr1:83624482:C:T	rs12125932	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	83856572	83856573	chr1:83856573:T:C	rs11163859	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	84300628	84300629	chr1:84300629:A:G	rs116714148	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	84300636	84300637	chr1:84300637:T:C	rs72942035	T	C	T	Hoxa9_MA0594.1	7	1	-	8.899082879431504	1.996149205728583	AACATCAATCA
chr1	84302307	84302308	chr1:84302308:G:A	rs181557625	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	84620233	84620234	chr1:84620234:T:A	rs2911610	T	A	A	Hoxa9_MA0594.1	3	1	-	8.561166597372587	1.7184299547648978	GTCATAAATAA
chr1	84634612	84634613	chr1:84634613:T:C	rs74805603	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	84700877	84700878	chr1:84700878:G:A	rs2994449	G	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	84836423	84836424	chr1:84836424:T:C	rs117903548	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	84854556	84854557	chr1:84854557:T:C	rs755933813	T	C	T	Hoxa9_MA0594.1	4	1	+	9.736370122260793	2.8276153429455726	CTCATAAATCT
chr1	84854576	84854577	chr1:84854577:A:G	chr1:84854577:A:G	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	84887437	84887438	chr1:84887438:G:A	rs11580759	G	A	G	Hoxa9_MA0594.1	0	1	+	8.007749574707272	7.1425640619847215	GTCATCAATAA
chr1	84907652	84907653	chr1:84907653:A:G	rs6664563	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	85367124	85367125	chr1:85367125:A:C	rs72722689	A	C	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	85629929	85629930	chr1:85629930:A:C	rs1360240	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	85999297	85999298	chr1:85999298:A:G	rs11161717	A	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	86111693	86111694	chr1:86111694:A:C	rs12062793	A	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	86111697	86111698	chr1:86111698:C:T	rs61802235	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	86135639	86135640	chr1:86135640:G:C	rs75426564	G	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	86192688	86192689	chr1:86192689:T:C	rs111868233	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	86380365	86380366	chr1:86380366:A:G	rs4656044	A	G	A	Hoxa9_MA0594.1	10	1	+	8.62774971750127	1.9909767317485008	CCCATAAAACA
chr1	86596517	86596518	chr1:86596518:G:A	rs6679741	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	87151257	87151258	chr1:87151258:A:C	rs6663703	A	C	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	87221726	87221727	chr1:87221727:T:C	rs72725826	T	C	T	Hoxa9_MA0594.1	3	1	-	9.506381912457487	6.524585485048628	CCAATAAATCT
chr1	87287092	87287093	chr1:87287093:C:A	rs6675584	C	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	87826977	87826978	chr1:87826978:T:C	rs13375846	T	C	T	Hoxa9_MA0594.1	7	1	-	8.351258581102782	1.4483249073998614	CCAATAAATTA
chr1	87963504	87963505	chr1:87963505:A:G	rs76295289	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	87968202	87968203	chr1:87968203:C:T	rs56293054	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	88188274	88188275	chr1:88188275:G:A	rs78100465	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	88225207	88225208	chr1:88225208:A:G	rs570225822	A	G	A	Hoxa9_MA0594.1	8	1	-	6.837082112140813	-0.036205937959076506	CCCATCCATCT
chr1	88276232	88276233	chr1:88276233:G:C	rs1288671	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	88276326	88276327	chr1:88276327:T:G	rs569619	T	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	88321807	88321808	chr1:88321808:A:G	rs190467010	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	88359362	88359363	chr1:88359363:G:C	rs116018940	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	88683055	88683056	chr1:88683056:G:C	rs111885431	G	C	G	Hoxa9_MA0594.1	2	1	-	7.968539260925265	1.4446392731769255	CTCATACATCA
chr1	89029027	89029028	chr1:89029028:T:C	rs10922548	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	89127353	89127354	chr1:89127354:G:T	rs61798958	G	T	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	89127367	89127368	chr1:89127368:G:A	rs141670171	G	A	G	Hoxa9_MA0594.1	9	1	-	9.929418333235837	7.304705114651599	GCAATAAATCT
chr1	89523774	89523775	chr1:89523775:C:T	rs168611	C	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	89523794	89523795	chr1:89523795:C:T	rs359920	C	T	T	Hoxa9_MA0594.1	2	1	+	8.848095527589834	6.9277644444626105	GACATAAATCT
chr1	89696537	89696538	chr1:89696538:T:C	rs113871201	T	C	T	Hoxa9_MA0594.1	0	1	-	9.642272946632424	10.507458459354975	ATAATAAATCA
chr1	89724214	89724215	chr1:89724215:C:T	rs1011702	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	89907157	89907158	chr1:89907158:T:C	rs2801996	T	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	90401220	90401221	chr1:90401221:A:C	rs7547180	A	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	90832089	90832090	chr1:90832090:G:A	rs61737574	G	A	G	Hoxa9_MA0594.1	3	1	+	9.115713343191864	12.097509770600722	CCCGTAAATCA
chr1	91022561	91022562	chr1:91022562:G:A	rs568892794	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	91037456	91037457	chr1:91037457:A:G	rs12128971	A	G	A	Hoxa9_MA0594.1	7	1	+	8.843479834418904	1.9405461607159835	ATTATAAATCA
chr1	91552857	91552858	chr1:91552858:T:C	rs6685254	T	C	C	Hoxa9_MA0594.1	10	1	-	9.126027407570612	2.4892544218178436	GCCATCTATCA
chr1	91569565	91569566	chr1:91569566:A:G	rs906634	A	G	G	Hoxa9_MA0594.1	9	1	+	8.476262915039317	4.745761786234562	CCCATCAATAA
chr1	91597330	91597331	chr1:91597331:G:A	rs72712437	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	91601791	91601792	chr1:91601792:C:T	rs12124960	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	91734744	91734745	chr1:91734745:C:T	rs141107775	C	T	C	Hoxa9_MA0594.1	9	1	+	11.628996430268678	9.00428321168444	GTCATAAATCA
chr1	91851754	91851755	chr1:91851755:C:T	rs2799524	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	91879983	91879984	chr1:91879984:C:A	rs2799510	C	A	A	Hoxa9_MA0594.1	0	1	-	8.159236377169226	5.191234611182606	GTCATAAAACA
chr1	91916936	91916937	chr1:91916937:A:G	rs6674287	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	91926300	91926301	chr1:91926301:G:C	rs114408426	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	92133249	92133250	chr1:92133250:T:A	rs1157470	T	A	A	Hoxa9_MA0594.1	6	1	-	8.159236377169226	5.31813461602608	GTCATAAAACA
chr1	92472754	92472755	chr1:92472755:G:A	rs181901855	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	92623365	92623366	chr1:92623366:G:A	rs72724541	G	A	G	Hoxa9_MA0594.1	9	1	-	7.968539260925265	5.343826042341027	CTCATACATCA
chr1	92641313	92641314	chr1:92641314:C:T	rs3936945	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	92848021	92848022	chr1:92848022:G:C	rs2244005	G	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	92994403	92994404	chr1:92994404:C:T	rs191580945	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	92994411	92994412	chr1:92994412:A:C	chr1:92994412:A:C	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	93025717	93025718	chr1:93025718:A:G	rs9787147	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	93029460	93029461	chr1:93029461:C:T	rs775005122	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	93056351	93056352	chr1:93056352:G:A	rs549364	G	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	93129748	93129749	chr1:93129749:G:C	rs2281525	G	C	C	Hoxa9_MA0594.1	1	1	-	7.877589431813438	4.818821470166475	TCAATCAATCA
chr1	93286419	93286420	chr1:93286420:C:T	rs72959255	C	T	C	Hoxa9_MA0594.1	2	1	+	7.605819354503911	5.6854882713766886	GTCATCAAACA
chr1	93442020	93442021	chr1:93442021:A:G	rs17109951	A	G	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	93682475	93682476	chr1:93682476:A:T	rs6541387	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	93687182	93687183	chr1:93687183:T:G	rs7519952	T	G	G	Hoxa9_MA0594.1	8	1	+	9.294221030316594	4.339325100378125	ATCATAAATCT
chr1	93743419	93743420	chr1:93743420:A:G	rs11582870	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	93874418	93874419	chr1:93874419:C:T	rs3789459	C	T	T	Hoxa9_MA0594.1	1	1	+	8.01767889594621	7.126129134835814	ACAATGAATCA
chr1	93905861	93905862	chr1:93905862:T:G	chr1:93905862:T:G	T	G	T	Hoxa9_MA0594.1	5	1	-	11.628996430268678	11.075579407603364	GTCATAAATCA
chr1	93980816	93980817	chr1:93980817:C:T	rs72725124	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	93981021	93981022	chr1:93981022:C:A	rs11165055	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	93981032	93981033	chr1:93981033:C:A	rs11165056	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	94536293	94536294	chr1:94536294:T:C	chr1:94536294:T:C	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	94592181	94592182	chr1:94592182:A:G	rs142090766	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	94656961	94656962	chr1:94656962:T:G	rs17111996	T	G	T	Hoxa9_MA0594.1	5	1	-	8.18560062555707	7.632183602891756	ACCATAAAACA
chr1	94783749	94783750	chr1:94783750:C:T	rs12743267	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	94808407	94808408	chr1:94808408:C:T	rs6686047	C	T	C	Hoxa9_MA0594.1	0	1	-	8.044303216718815	7.179117703996264	GTAATAAATCC
chr1	94823892	94823893	chr1:94823893:A:G	rs11590142	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	94903870	94903871	chr1:94903871:T:G	rs138903152	T	G	T	Hoxa9_MA0594.1	5	1	+	8.655440400273676	9.112852618472068	GTCATTAATCA
chr1	95019919	95019920	chr1:95019920:G:T	rs72720242	G	T	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	95094825	95094826	chr1:95094826:T:C	rs12569038	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	95363095	95363096	chr1:95363096:A:G	rs12562298	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	95372129	95372130	chr1:95372130:A:G	rs7524217	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	95375377	95375378	chr1:95375378:C:T	rs12040749	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	96003702	96003703	chr1:96003703:T:G	rs321255	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	96003705	96003706	chr1:96003706:C:A	rs77725699	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	96346926	96346927	chr1:96346927:A:G	rs7511634	A	G	A	Hoxa9_MA0594.1	3	1	+	9.679444430235927	6.6976480028270675	GCCATATATCA
chr1	96369981	96369982	chr1:96369982:C:G	rs600169	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	96520238	96520239	chr1:96520239:C:T	rs114388320	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	96524229	96524230	chr1:96524230:A:G	rs1988854	A	G	A	Hoxa9_MA0594.1	8	1	-	8.899082879431504	2.025794829331614	AACATCAATCA
chr1	96962473	96962474	chr1:96962474:G:A	rs12066233	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	97200713	97200714	chr1:97200714:C:T	rs144885566	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	97430205	97430206	chr1:97430206:T:C	rs11165870	T	C	T	Hoxa9_MA0594.1	8	1	+	9.452499902096816	2.5792118519969276	AACATAAATCA
chr1	97680697	97680698	chr1:97680698:C:A	rs76408807	C	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	98046304	98046305	chr1:98046305:A:G	rs145228502	A	G	A	Hoxa9_MA0594.1	3	1	+	9.19220543602036	6.210409008611503	ACCATAAATCC
chr1	98314900	98314901	chr1:98314901:C:T	rs35068763	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	98426280	98426281	chr1:98426281:A:G	rs6700104	A	G	A	Hoxa9_MA0594.1	7	1	+	7.877589431813438	0.9746557581105182	TCAATCAATCA
chr1	98449850	98449851	chr1:98449851:G:A	rs12084220	G	A	G	Hoxa9_MA0594.1	1	1	-	8.88286440866876	7.991314647558364	GCAATGAATCA
chr1	98797861	98797862	chr1:98797862:G:A	rs9729300	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	98897555	98897556	chr1:98897556:C:T	rs115042862	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	99150157	99150158	chr1:99150158:C:T	rs587509	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	99441911	99441912	chr1:99441912:T:C	rs76354105	T	C	T	Hoxa9_MA0594.1	2	1	-	8.16158747190031	2.759225455065672	GCAATACATCA
chr1	99441927	99441928	chr1:99441928:G:A	rs781420680	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	99552144	99552145	chr1:99552145:A:G	rs6656134	A	G	G	Hoxa9_MA0594.1	5	1	+	9.552544425392455	7.036400613595844	TCCATAAATCA
chr1	99558100	99558101	chr1:99558101:A:G	rs77930938	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	99753453	99753454	chr1:99753454:C:T	rs6577135	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	99877516	99877517	chr1:99877517:T:A	rs2291637	T	A	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	99914694	99914695	chr1:99914695:T:A	rs3820157	T	A	T	Hoxa9_MA0594.1	9	1	-	9.45271635848298	9.895832972794834	GCCATAAATAA
chr1	100325675	100325676	chr1:100325676:A:T	rs11809147	A	T	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	100585652	100585653	chr1:100585653:C:T	rs10875318	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	100597307	100597308	chr1:100597308:A:C	rs932533256	A	C	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	100611766	100611767	chr1:100611767:T:C	rs7415343	T	C	T	Hoxa9_MA0594.1	4	1	+	9.894648994041017	2.9858942147257963	CACATAAATCA
chr1	100626533	100626534	chr1:100626534:G:T	rs72977364	G	T	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	100855646	100855647	chr1:100855647:T:C	rs11166528	T	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	100860537	100860538	chr1:100860538:C:T	rs17123424	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	101237273	101237274	chr1:101237274:A:T	rs539770753	A	T	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	101242706	101242707	chr1:101242707:T:C	rs548378310	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	101254164	101254165	chr1:101254165:G:C	rs2038367	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	101254179	101254180	chr1:101254180:T:C	rs2038368	T	C	T	Hoxa9_MA0594.1	3	1	-	9.294221030316594	6.312424602907734	ATCATAAATCT
chr1	101295332	101295333	chr1:101295333:G:A	rs2144555	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	101301638	101301639	chr1:101301639:C:T	rs115049887	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	101454405	101454406	chr1:101454406:C:T	rs17124506	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	101506968	101506969	chr1:101506969:C:T	rs12125663	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	101701059	101701060	chr1:101701060:A:C	rs4907951	A	C	C	Hoxa9_MA0594.1	1	1	-	8.66099466428206	6.493776463745492	TTCATAAATCA
chr1	101826553	101826554	chr1:101826554:C:T	rs17470099	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	102113303	102113304	chr1:102113304:G:C	rs4445491	G	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	102896550	102896551	chr1:102896551:C:T	rs142314646	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	103018356	103018357	chr1:103018357:G:A	rs35037054	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	103087363	103087364	chr1:103087364:A:G	rs6577351	A	G	A	Hoxa9_MA0594.1	7	1	+	10.074502860705875	3.171569187002954	CCCATCAATCT
chr1	103087378	103087379	chr1:103087379:A:G	rs1415363	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	103109312	103109313	chr1:103109313:G:A	rs11811418	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	103199259	103199260	chr1:103199260:A:T	rs11805925	A	T	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	103199519	103199520	chr1:103199520:T:C	rs4360545	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	103211153	103211154	chr1:103211154:G:C	rs12131462	G	C	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	103211185	103211186	chr1:103211186:T:C	rs10782925	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	103341712	103341713	chr1:103341713:A:C	rs901771010	A	C	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	104291531	104291532	chr1:104291532:T:C	rs4463678	T	C	T	Hoxa9_MA0594.1	0	1	-	9.642272946632424	10.507458459354975	ATAATAAATCA
chr1	104348119	104348120	chr1:104348120:T:G	rs17021434	T	G	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	104353538	104353539	chr1:104353539:G:A	rs4409662	G	A	A	Hoxa9_MA0594.1	2	1	-	9.452499902096816	7.532168818969594	AACATAAATCA
chr1	104638901	104638902	chr1:104638902:C:T	rs11184238	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	104856044	104856045	chr1:104856045:T:C	rs11808536	T	C	T	Hoxa9_MA0594.1	7	1	-	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr1	104862492	104862493	chr1:104862493:C:T	rs75235839	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	105169840	105169841	chr1:105169841:T:C	rs4336905	T	C	T	Hoxa9_MA0594.1	7	1	-	8.73221190369779	1.8292782299948702	CTTATCAATCA
chr1	105173481	105173482	chr1:105173482:T:A	rs192429804	T	A	T	Hoxa9_MA0594.1	1	1	+	8.843479834418904	7.532168818969594	ATTATAAATCA
chr1	105334288	105334289	chr1:105334289:A:T	rs2491607	A	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	105460161	105460162	chr1:105460162:T:G	rs7519960	T	G	G	Hoxa9_MA0594.1	3	1	-	8.134870038543875	4.206655614064633	CCAATATATCA
chr1	105619110	105619111	chr1:105619111:T:C	rs12030280	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	105678551	105678552	chr1:105678552:C:T	rs790982	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	106567506	106567507	chr1:106567507:G:A	rs4440890	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	106576140	106576141	chr1:106576141:T:A	rs7536889	T	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	106889351	106889352	chr1:106889352:A:G	rs1519878	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	106978744	106978745	chr1:106978745:A:G	rs146953661	A	G	A	Hoxa9_MA0594.1	4	1	-	8.73221190369779	1.8234571243825688	CTTATCAATCA
chr1	106990545	106990546	chr1:106990546:C:G	rs6678299	C	G	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	107089918	107089919	chr1:107089919:T:C	rs1762490	T	C	T	Hoxa9_MA0594.1	5	1	-	9.030647460072283	6.5145036482756735	ACCATAAATTA
chr1	107150318	107150319	chr1:107150319:A:G	rs12074453	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	107437056	107437057	chr1:107437057:T:G	rs483206	T	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	107525903	107525904	chr1:107525904:G:A	rs562394025	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	107610007	107610008	chr1:107610008:G:T	rs2296877	G	T	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	107914445	107914446	chr1:107914446:G:C	rs76497323	G	C	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	107966807	107966808	chr1:107966808:T:C	rs345267	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	107966820	107966821	chr1:107966821:T:G	rs17229521	T	G	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	108012776	108012777	chr1:108012777:A:T	rs1578815	A	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	108120595	108120596	chr1:108120596:C:T	rs1660416	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	108662003	108662004	chr1:108662004:T:C	rs10857840	T	C	T	Hoxa9_MA0594.1	5	1	-	8.134870038543875	5.618726226747264	CCAATATATCA
chr1	108709002	108709003	chr1:108709003:G:A	rs116222409	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	108720081	108720082	chr1:108720082:T:C	rs554675654	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	109092065	109092066	chr1:109092066:T:G	rs10494108	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	109214920	109214921	chr1:109214921:A:G	rs141792440	A	G	A	Hoxa9_MA0594.1	3	1	+	10.627919883371188	7.64612345596233	CCCATAAATCT
chr1	109653481	109653482	chr1:109653482:A:G	rs188035370	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	109658957	109658958	chr1:109658958:C:T	rs650985	C	T	.	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	109706553	109706554	chr1:109706554:T:C	rs11579576	T	C	.	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	109714308	109714309	chr1:109714309:G:C	rs12743015	G	C	.	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	109802005	109802006	chr1:109802006:A:T	rs56986313	A	T	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	109802009	109802010	chr1:109802010:C:G	rs61495140	C	G	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	109907642	109907643	chr1:109907643:C:G	rs112543246	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	109948589	109948590	chr1:109948590:C:T	rs6675402	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	110056575	110056576	chr1:110056576:G:A	rs112198000	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	110100595	110100596	chr1:110100596:T:C	rs74918655	T	C	T	Hoxa9_MA0594.1	3	1	-	7.7140234448373395	4.732227017428481	CCTATAAATCC
chr1	110100602	110100603	chr1:110100603:A:G	rs627067	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	110108149	110108150	chr1:110108150:C:T	rs56778419	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	110264228	110264229	chr1:110264229:A:C	rs12127427	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	110425110	110425111	chr1:110425111:G:A	rs11799347	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	110494094	110494095	chr1:110494095:T:C	rs17630160	T	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	110824524	110824525	chr1:110824525:C:T	rs12034252	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	110859678	110859679	chr1:110859679:G:A	rs67537159	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	111274627	111274628	chr1:111274628:G:A	rs12567865	G	A	G	Hoxa9_MA0594.1	0	1	+	9.95404143668966	9.08885592396711	GTAATCAATCA
chr1	111427902	111427903	chr1:111427903:C:T	rs186920539	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	111474896	111474897	chr1:111474897:A:G	rs74656338	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	111572594	111572595	chr1:111572595:G:A	rs74868687	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	111631804	111631805	chr1:111631805:C:T	rs3843829	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	111689663	111689664	chr1:111689664:C:G	rs78827220	C	G	c	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	111730862	111730863	chr1:111730863:T:C	rs1546924	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	111749275	111749276	chr1:111749276:C:T	rs116620730	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	111749310	111749311	chr1:111749311:T:C	rs569138448	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	111881149	111881150	chr1:111881150:C:T	rs56229278	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	112264446	112264447	chr1:112264447:T:C	rs17029913	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	112317439	112317440	chr1:112317440:C:T	rs144804687	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	112317441	112317442	chr1:112317442:A:G	rs74110034	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	112434737	112434738	chr1:112434738:C:G	rs2483346	C	G	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	112563746	112563747	chr1:112563747:A:G	rs12126277	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	113098312	113098313	chr1:113098313:A:G	rs1216808	A	G	N	Hoxa9_MA0594.1	3	1	+	7.6543638533761875	4.672567425967328	CCCATTAATCT
chr1	113197828	113197829	chr1:113197829:T:C	rs145448732	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	113247825	113247826	chr1:113247826:A:C	rs2147599	A	C	A	Hoxa9_MA0594.1	10	1	+	9.08885592396711	6.625700681330949	ATAATCAATCA
chr1	113545294	113545295	chr1:113545295:T:C	rs34079561	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	113563337	113563338	chr1:113563338:C:G	rs116182134	C	G	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	113901276	113901277	chr1:113901277:G:A	rs17464525	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	114015321	114015322	chr1:114015322:C:T	chr1:114015322:C:T	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	114082440	114082441	chr1:114082441:A:C	chr1:114082441:A:C	A	C	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	114135958	114135959	chr1:114135959:G:A	rs4839363	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	114136234	114136235	chr1:114136235:G:T	rs7527134	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	114485589	114485590	chr1:114485590:G:C	rs112320824	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	114820033	114820034	chr1:114820034:T:C	rs3121505	T	C	T	Hoxa9_MA0594.1	2	1	-	9.037868572125442	3.6355065552908035	GTAATAAATCT
chr1	115182582	115182583	chr1:115182583:G:A	rs72697990	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	115192427	115192428	chr1:115192428:C:T	rs10489532	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	115204544	115204545	chr1:115204545:C:A	rs12081462	C	A	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	115239446	115239447	chr1:115239447:A:G	rs1777719	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	115266900	115266901	chr1:115266901:T:C	rs80320440	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	115277519	115277520	chr1:115277520:C:A	rs182174161	C	A	C	Hoxa9_MA0594.1	1	1	+	8.53481249235293	6.331951715793224	GCCATGAATCT
chr1	115400399	115400400	chr1:115400400:T:C	rs144251826	T	C	T	Hoxa9_MA0594.1	3	1	-	10.159406543039145	7.177610115630285	GTCATAAATCT
chr1	115506829	115506830	chr1:115506830:C:T	rs112940693	C	T	C	Hoxa9_MA0594.1	1	1	+	8.01767889594621	7.126129134835814	ACAATGAATCA
chr1	115588299	115588300	chr1:115588300:T:C	rs7534425	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	115769992	115769993	chr1:115769993:T:C	rs3810997	T	C	T	Hoxa9_MA0594.1	4	1	+	9.708665347141455	2.7999105678262337	GTTATAAATCA
chr1	115969272	115969273	chr1:115969273:A:T	rs10733105	A	T	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	115978435	115978436	chr1:115978436:A:C	rs924277	A	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	115998161	115998162	chr1:115998162:G:A	rs10754427	G	A	g	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	116278387	116278388	chr1:116278388:C:T	rs60659753	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	116287364	116287365	chr1:116287365:T:C	rs9919147	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	116378404	116378405	chr1:116378405:T:G	chr1:116378405:T:G	T	G	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	116537753	116537754	chr1:116537754:G:A	rs142887794	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	117093916	117093917	chr1:117093917:C:T	rs578076216	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	117336443	117336444	chr1:117336444:C:T	rs878618	C	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	117757727	117757728	chr1:117757728:A:G	rs10923414	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	117796496	117796497	chr1:117796497:A:C	rs1780033	A	C	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	117796497	117796498	chr1:117796498:T:A	rs1615814	T	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	117948363	117948364	chr1:117948364:C:G	rs74114919	C	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	118077687	118077688	chr1:118077688:A:T	rs11807107	A	T	A	Hoxa9_MA0594.1	4	1	-	8.351258581102782	1.442503801787561	CCAATAAATTA
chr1	118301051	118301052	chr1:118301052:C:T	rs2490198	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	118454057	118454058	chr1:118454058:T:C	rs1229130	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	118627646	118627647	chr1:118627647:T:C	rs58060170	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	118710802	118710803	chr1:118710803:C:A	rs2755140	C	A	a	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	118949109	118949110	chr1:118949110:T:A	rs2225024	T	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	118949140	118949141	chr1:118949141:G:C	rs1409154	G	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	118996081	118996082	chr1:118996082:G:A	rs716217	G	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	119181425	119181426	chr1:119181426:G:T	rs12034984	G	T	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	119181426	119181427	chr1:119181427:G:C	rs12034985	G	C	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	119197863	119197864	chr1:119197864:T:G	rs36056590	T	G	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	119298969	119298970	chr1:119298970:C:G	rs1418023	C	G	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	119318836	119318837	chr1:119318837:C:A	rs725247	C	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	119610263	119610264	chr1:119610264:A:G	rs11799580	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	119614029	119614030	chr1:119614030:T:C	rs34662109	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	119673444	119673445	chr1:119673445:T:G	chr1:119673445:T:G	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	119687095	119687096	chr1:119687096:A:G	rs12023426	A	G	A	Hoxa9_MA0594.1	8	1	-	9.506381912457487	2.633093862357597	CCAATAAATCT
chr1	119712954	119712955	chr1:119712955:C:G	rs839615	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	145826264	145826265	chr1:145826265:A:G	rs141373368	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	146986093	146986094	chr1:146986094:C:T	rs1243635029	C	T	.	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	147287848	147287849	chr1:147287849:G:A	rs12755465	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	147506138	147506139	chr1:147506139:C:T	rs17160295	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	147542719	147542720	chr1:147542720:G:T	rs73007950	G	T	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	147805649	147805650	chr1:147805650:T:C	rs1342709	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	147815601	147815602	chr1:147815602:G:C	rs139177917	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	149152427	149152428	chr1:149152428:T:G	rs1304926203	T	G	t	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	149664955	149664956	chr1:149664956:A:T	rs879073542	A	T	t	Hoxa9_MA0594.1	7	1	+	9.929418333235837	3.0264846595329167	GCAATAAATCT
chr1	149664966	149664967	chr1:149664967:T:C	rs879056341	T	C	c	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	150173447	150173448	chr1:150173448:C:T	rs73020873	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	150280572	150280573	chr1:150280573:T:G	rs2274127	T	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	150374897	150374898	chr1:150374898:G:A	rs1260457	G	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	150914900	150914901	chr1:150914901:T:C	rs4970984	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	151910509	151910510	chr1:151910510:C:T	rs1045817205	C	T	C	Hoxa9_MA0594.1	1	1	+	8.774295001881132	7.882745240770737	GCAATAAATTA
chr1	152024722	152024723	chr1:152024723:A:C	rs2999559	A	C	C	Hoxa9_MA0594.1	8	1	-	8.773111023127315	3.8182150931888463	CAAATAAATCA
chr1	152220034	152220035	chr1:152220035:G:T	rs768490138	G	T	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	152220072	152220073	chr1:152220073:T:G	rs12145941	T	G	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	152366556	152366557	chr1:152366557:A:G	rs72698921	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	152442731	152442732	chr1:152442732:A:G	rs4636462	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	152525389	152525390	chr1:152525390:T:A	rs525960	T	A	T	Hoxa9_MA0594.1	8	1	+	7.390499134806127	3.920739081706675	CCCATACATCT
chr1	152525448	152525449	chr1:152525449:A:G	rs79563434	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	153147492	153147493	chr1:153147493:T:C	rs533437	T	C	T	Hoxa9_MA0594.1	6	1	-	9.53100501591131	2.7134042301556534	CTAATCAATCA
chr1	153239075	153239076	chr1:153239076:G:A	rs12070995	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	153239080	153239081	chr1:153239081:T:C	rs6587733	T	C	C	Hoxa9_MA0594.1	7	1	-	8.01767889594621	1.11474522224329	ACAATGAATCA
chr1	153518109	153518110	chr1:153518110:G:A	rs78414796	G	A	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	153578764	153578765	chr1:153578765:A:G	rs536225695	A	G	A	Hoxa9_MA0594.1	1	1	-	7.700782005789437	8.592331766899832	GTCCTAAATCA
chr1	153697499	153697500	chr1:153697500:C:T	rs111381790	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	153795183	153795184	chr1:153795184:C:T	rs369558024	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	153866568	153866569	chr1:153866569:C:T	rs34805562	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	154408009	154408010	chr1:154408010:G:A	rs6427641	G	A	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	154431859	154431860	chr1:154431860:C:T	rs7549250	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	154709473	154709474	chr1:154709474:A:G	rs6695232	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	154772940	154772941	chr1:154772941:A:G	rs57482361	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	155066036	155066037	chr1:155066037:A:G	rs991349425	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	155944875	155944876	chr1:155944876:A:T	chr1:155944876:A:T	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	155944898	155944899	chr1:155944899:G:C	rs529203796	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	156097174	156097175	chr1:156097175:T:C	rs6700693	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	156305489	156305490	chr1:156305490:G:A	rs7522860	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	156448529	156448530	chr1:156448530:G:T	rs149471014	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	156649679	156649680	chr1:156649680:A:G	rs114704886	A	G	A	Hoxa9_MA0594.1	2	1	-	7.7140234448373395	9.634354527964561	CCTATAAATCC
chr1	156806924	156806925	chr1:156806925:T:C	rs928391	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	156994081	156994082	chr1:156994082:T:C	rs1572414	T	C	T	Hoxa9_MA0594.1	7	1	-	8.581246790906087	1.6783131172031682	CTCATAAATTA
chr1	157070410	157070411	chr1:157070411:G:A	rs35904515	G	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	157134677	157134678	chr1:157134678:C:G	rs6704373	C	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	157234463	157234464	chr1:157234464:A:G	rs11264643	A	G	N	Hoxa9_MA0594.1	5	1	+	7.994175372278161	5.4780315604815515	CCAGTAAATCA
chr1	157235795	157235796	chr1:157235796:A:C	rs2316831	A	C	N	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	157235803	157235804	chr1:157235804:T:C	rs2316832	T	C	N	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	157282222	157282223	chr1:157282223:C:T	rs1338686	C	T	N	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	157331802	157331803	chr1:157331803:A:G	rs4661026	A	G	a	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	157482697	157482698	chr1:157482698:T:C	rs10908571	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	157696853	157696854	chr1:157696854:T:C	rs6681271	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	157929533	157929534	chr1:157929534:C:T	rs35501034	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	157961988	157961989	chr1:157961989:C:A	rs76449119	C	A	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	157966305	157966306	chr1:157966306:C:T	rs140755851	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	158020949	158020950	chr1:158020950:G:A	rs1925038	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	158401681	158401682	chr1:158401682:T:A	rs61818752	T	A	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	158969336	158969337	chr1:158969337:C:T	rs72704948	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	159046642	159046643	chr1:159046643:A:C	rs115506051	A	C	.	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	159122347	159122348	chr1:159122348:A:G	rs1005857	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	159198253	159198254	chr1:159198254:G:A	rs862995	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	159831138	159831139	chr1:159831139:C:T	rs10158111	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	159922297	159922298	chr1:159922298:G:A	rs2789422	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	160022991	160022992	chr1:160022992:T:C	rs12239927	T	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	160191936	160191937	chr1:160191937:C:T	rs73025591	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	160209191	160209192	chr1:160209192:C:A	rs183188775	C	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	160219176	160219177	chr1:160219177:C:T	rs111397883	C	T	C	Hoxa9_MA0594.1	9	1	+	9.341231971375704	6.7165187527914645	CACATCAATCA
chr1	160576865	160576866	chr1:160576866:C:T	rs2369721	C	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	160578936	160578937	chr1:160578937:C:T	rs1466932	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	160969653	160969654	chr1:160969654:A:G	rs10908818	A	G	a	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	161128810	161128811	chr1:161128811:G:A	rs150901375	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	161226040	161226041	chr1:161226041:G:A	rs377329186	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	161728869	161728870	chr1:161728870:C:A	rs12139524	C	A	C	Hoxa9_MA0594.1	1	1	+	9.503973926077597	7.301113149517894	GCCATCAATCC
chr1	162146249	162146250	chr1:162146250:T:C	rs1337059	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	162169080	162169081	chr1:162169081:G:A	rs17457052	G	A	G	Hoxa9_MA0594.1	2	1	-	10.074502860705875	8.154171777578652	CCCATCAATCT
chr1	162205747	162205748	chr1:162205748:C:T	rs6701225	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	162267864	162267865	chr1:162267865:T:C	rs12410644	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	162364647	162364648	chr1:162364648:G:A	rs111849836	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	162371850	162371851	chr1:162371851:C:T	rs76800798	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	162386679	162386680	chr1:162386680:A:G	rs3738395	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	162703914	162703915	chr1:162703915:C:T	rs17433759	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	162710699	162710700	chr1:162710700:T:C	rs10799868	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	162917628	162917629	chr1:162917629:C:T	rs12143958	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	163381978	163381979	chr1:163381979:T:G	rs1439434879	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	163766451	163766452	chr1:163766452:A:G	rs78106877	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	164298348	164298349	chr1:164298349:A:C	rs493958	A	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	164775651	164775652	chr1:164775652:T:C	rs10753646	T	C	T	Hoxa9_MA0594.1	5	1	-	8.59659271700956	6.0804489052129505	AGCATAAATCA
chr1	165460075	165460076	chr1:165460076:A:G	rs139266156	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	165634649	165634650	chr1:165634650:G:A	rs9333389	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	165634656	165634657	chr1:165634657:C:T	rs1538114	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	165862160	165862161	chr1:165862161:T:C	rs75213754	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	165883782	165883783	chr1:165883783:C:T	rs10918302	C	T	C	Hoxa9_MA0594.1	1	1	+	9.064232820513286	8.17268305940289	ACAATAAATCT
chr1	165898931	165898932	chr1:165898932:T:C	rs3790659	T	C	C	Hoxa9_MA0594.1	7	1	-	7.118210716167953	0.21527704246503188	CCCATGAATCC
chr1	166379215	166379216	chr1:166379216:G:A	rs6679446	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	166705714	166705715	chr1:166705715:T:G	rs12046226	T	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	166705746	166705747	chr1:166705747:G:A	rs12048648	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	166859069	166859070	chr1:166859070:C:A	rs4657607	C	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	167105512	167105513	chr1:167105513:T:C	rs16858452	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	167105546	167105547	chr1:167105547:T:C	rs906262397	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	167120043	167120044	chr1:167120044:A:C	rs12062066	A	C	A	Hoxa9_MA0594.1	7	1	+	8.074332694835956	3.089791141294457	CCCATCAAACA
chr1	167163103	167163104	chr1:167163104:C:T	rs11577383	C	T	C	Hoxa9_MA0594.1	2	1	+	9.894648994041017	7.974317910913794	CACATAAATCA
chr1	167220627	167220628	chr1:167220628:G:A	chr1:167220628:G:A	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	167457932	167457933	chr1:167457933:T:A	rs1214596	T	A	T	Hoxa9_MA0594.1	10	1	-	7.877589431813438	6.407999544583904	TCAATCAATCA
chr1	167468541	167468542	chr1:167468542:C:T	rs116312494	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	167512211	167512212	chr1:167512212:C:A	rs890167653	C	A	C	Hoxa9_MA0594.1	0	1	+	9.506381912457487	9.064232820513286	CCAATAAATCT
chr1	167541758	167541759	chr1:167541759:G:A	rs2143300	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	167544485	167544486	chr1:167544486:G:A	rs12042693	G	A	g	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	167548248	167548249	chr1:167548249:C:T	rs139296899	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	167573291	167573292	chr1:167573292:G:C	rs11802066	G	C	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	167632268	167632269	chr1:167632269:G:A	rs74119892	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	167658997	167658998	chr1:167658998:C:A	rs61690137	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	167697916	167697917	chr1:167697917:C:T	rs73035729	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	167697953	167697954	chr1:167697954:A:G	rs73035732	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	167706297	167706298	chr1:167706298:A:G	rs12116771	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	167762437	167762438	chr1:167762438:G:A	rs555394351	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	167856367	167856368	chr1:167856368:A:G	rs2071922	A	G	A	Hoxa9_MA0594.1	5	1	+	8.082954538162921	5.5668107263663105	TCCATAAATCT
chr1	167962223	167962224	chr1:167962224:T:G	rs7535138	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	168008288	168008289	chr1:168008289:C:T	rs12093927	C	T	T	Hoxa9_MA0594.1	9	1	+	10.159406543039145	7.534693324454906	GTCATAAATCT
chr1	168286169	168286170	chr1:168286170:A:G	rs74436931	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	168320435	168320436	chr1:168320436:T:C	rs16860371	T	C	T	Hoxa9_MA0594.1	10	1	+	8.4262430855653	7.432677730158673	GCCATAAATTT
chr1	168361561	168361562	chr1:168361562:G:C	rs2268559	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	168435967	168435968	chr1:168435968:T:C	rs1407955	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	168439949	168439950	chr1:168439950:G:A	rs78451268	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	168439987	168439988	chr1:168439988:C:T	rs184800597	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	168456658	168456659	chr1:168456659:C:T	rs140749359	C	T	C	Hoxa9_MA0594.1	0	1	-	7.605819354503911	6.740633841781361	GTCATCAAACA
chr1	168488496	168488497	chr1:168488497:G:T	rs12089035	G	T	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	168569579	168569580	chr1:168569580:T:C	rs12062199	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	168894933	168894934	chr1:168894934:A:G	rs74123030	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	169134364	169134365	chr1:169134365:T:C	rs181866261	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	169766055	169766056	chr1:169766056:G:A	rs12121606	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	169891057	169891058	chr1:169891058:C:T	rs16862745	C	T	C	Hoxa9_MA0594.1	2	1	+	7.8728260628999855	5.952494979772764	GCCATCAATTT
chr1	170010688	170010689	chr1:170010689:G:C	rs35540647	G	C	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	170133554	170133555	chr1:170133555:G:A	rs979347	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	170226465	170226466	chr1:170226466:A:G	rs72700121	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	170262039	170262040	chr1:170262040:A:G	rs188629208	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	170437221	170437222	chr1:170437222:C:T	rs12128140	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	170483359	170483360	chr1:170483360:C:T	rs12124515	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	171252037	171252038	chr1:171252038:A:T	rs78266892	A	T	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	171412606	171412607	chr1:171412607:A:G	rs7515865	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	171422045	171422046	chr1:171422046:A:G	rs140423118	A	G	A	Hoxa9_MA0594.1	7	1	+	8.007749574707272	1.1048159010043515	GTCATCAATAA
chr1	171614325	171614326	chr1:171614326:T:C	rs59135694	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	171686071	171686072	chr1:171686072:T:G	rs73042000	T	G	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	171725425	171725426	chr1:171725426:C:A	rs6678890	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	172054206	172054207	chr1:172054207:C:T	rs6669406	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	172146013	172146014	chr1:172146014:C:T	rs12120556	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	172162345	172162346	chr1:172162346:A:T	rs585823	A	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	172182531	172182532	chr1:172182532:G:T	rs479960	G	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	172287688	172287689	chr1:172287689:C:T	rs2586394	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	172322466	172322467	chr1:172322467:A:T	rs547960049	A	T	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	172351366	172351367	chr1:172351367:T:C	rs113617963	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	172358707	172358708	chr1:172358708:A:G	rs112907030	A	G	A	Hoxa9_MA0594.1	4	1	-	8.88286440866876	1.9741096293535405	GCAATGAATCA
chr1	172407905	172407906	chr1:172407906:G:A	rs10489282	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	172476742	172476743	chr1:172476743:G:A	rs7551242	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	172728068	172728069	chr1:172728069:C:G	rs80297399	C	G	C	Hoxa9_MA0594.1	1	1	+	8.476262915039317	5.417494953392356	CCCATCAATAA
chr1	172756867	172756868	chr1:172756868:G:A	rs149590058	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	172882977	172882978	chr1:172882978:A:G	rs12037781	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	172897865	172897866	chr1:172897866:A:C	rs12748081	A	C	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	172928602	172928603	chr1:172928603:A:G	rs149893729	A	G	A	Hoxa9_MA0594.1	8	1	-	8.061415128681777	1.1881270785818874	CTAATCAATCT
chr1	173122552	173122553	chr1:173122553:G:A	rs72722825	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	173137426	173137427	chr1:173137427:G:A	rs1234311	G	A	G	Hoxa9_MA0594.1	0	1	-	9.03874180895376	6.493776463745492	CGCATAAATCA
chr1	173297438	173297439	chr1:173297439:G:A	rs4916319	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	173672746	173672747	chr1:173672747:G:A	rs58977252	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	174644250	174644251	chr1:174644251:A:G	rs72715273	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	174777117	174777118	chr1:174777118:G:A	rs115295593	G	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	174796307	174796308	chr1:174796308:A:G	rs1793320	A	G	N	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	174842038	174842039	chr1:174842039:G:A	rs1894200	G	A	g	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	174972394	174972395	chr1:174972395:A:G	rs10912860	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	174983088	174983089	chr1:174983089:T:C	rs11806870	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	175122846	175122847	chr1:175122847:T:A	rs12087735	T	A	T	Hoxa9_MA0594.1	7	1	-	9.60598952037383	2.703055846670909	GTCATCAATCT
chr1	175154852	175154853	chr1:175154853:A:G	rs115524974	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	175433847	175433848	chr1:175433848:C:A	rs78592708	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	175573643	175573644	chr1:175573644:A:C	rs1364950115	A	C	A	Hoxa9_MA0594.1	10	1	+	9.895832972794834	7.432677730158673	GCCATAAATTA
chr1	175604242	175604243	chr1:175604243:G:A	rs141194753	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	175810429	175810430	chr1:175810430:G:C	rs80172535	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	175835034	175835035	chr1:175835035:A:G	rs74129349	A	G	A	Hoxa9_MA0594.1	2	1	+	9.506381912457487	4.104019895622849	CCAATAAATCT
chr1	175842078	175842079	chr1:175842079:T:G	rs1052371966	T	G	T	Hoxa9_MA0594.1	10	1	-	8.351258581102782	5.888103338466621	CCAATAAATTA
chr1	176038975	176038976	chr1:176038976:G:A	rs7554913	G	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	176624387	176624388	chr1:176624388:G:A	rs12565327	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	176826418	176826419	chr1:176826419:C:T	rs1218519564	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	177004900	177004901	chr1:177004901:T:C	rs72720704	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	177033903	177033904	chr1:177033904:C:T	rs71628223	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	177033906	177033907	chr1:177033907:G:A	rs71628224	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	177087627	177087628	chr1:177087628:A:G	rs77827784	A	G	A	Hoxa9_MA0594.1	3	1	+	8.88286440866876	5.901067981259902	GCAATGAATCA
chr1	177368307	177368308	chr1:177368308:A:G	rs10913310	A	G	A	Hoxa9_MA0594.1	3	1	+	7.163300618439317	4.1815041910304585	GCCATGTATCA
chr1	177511704	177511705	chr1:177511705:C:A	rs12029490	C	A	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	177818273	177818274	chr1:177818274:T:C	rs74128139	T	C	T	Hoxa9_MA0594.1	4	1	+	9.02967993770463	2.1209251583894106	CCCATAAATAA
chr1	177826507	177826508	chr1:177826508:A:T	rs12132241	A	T	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	177850030	177850031	chr1:177850031:A:G	rs6425453	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	177945884	177945885	chr1:177945885:G:A	rs1336782	G	A	G	Hoxa9_MA0594.1	3	1	-	8.038914744234518	5.12439252610607	GCCCTCAATCA
chr1	177976317	177976318	chr1:177976318:A:G	rs10913478	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	177976318	177976319	chr1:177976319:T:A	rs10913479	T	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	178469509	178469510	chr1:178469510:A:G	rs1985761	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	178558951	178558952	chr1:178558952:G:A	rs4652304	G	A	A	Hoxa9_MA0594.1	0	1	+	7.992188342502578	7.127002829780027	GGCATAAATCT
chr1	178560621	178560622	chr1:178560622:G:A	rs7540745	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	178657390	178657391	chr1:178657391:T:C	rs2761477	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	179081457	179081458	chr1:179081458:C:A	rs3813640	C	A	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	179081494	179081495	chr1:179081495:T:C	rs148308328	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	179296799	179296800	chr1:179296800:G:A	rs2246677	G	A	g	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	179300413	179300414	chr1:179300414:A:T	rs12049237	A	T	A	Hoxa9_MA0594.1	4	1	-	10.084422038576625	3.175667259261404	CTAATAAATCA
chr1	179302296	179302297	chr1:179302297:T:C	rs10913709	T	C	T	Hoxa9_MA0594.1	5	1	-	8.134870038543875	5.618726226747264	CCAATATATCA
chr1	179323306	179323307	chr1:179323307:G:A	rs2902277	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	179441026	179441027	chr1:179441027:C:T	rs6693527	C	T	c	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	179805029	179805030	chr1:179805030:T:C	rs1148825	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	179816601	179816602	chr1:179816602:G:A	rs2252388	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	179973595	179973596	chr1:179973596:A:G	rs76425715	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	180182876	180182877	chr1:180182877:C:T	rs117812122	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	180544181	180544182	chr1:180544182:A:G	rs6425647	A	G	G	Hoxa9_MA0594.1	2	1	+	7.440758349612847	2.038396332778209	CCAGTCAATCA
chr1	180633744	180633745	chr1:180633745:A:G	rs6676219	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	180644026	180644027	chr1:180644027:A:G	rs16856361	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	180675755	180675756	chr1:180675756:G:T	rs6693245	G	T	T	Hoxa9_MA0594.1	2	1	-	6.819970200177851	5.6984322292641485	GCCATACATCC
chr1	180752126	180752127	chr1:180752127:A:G	rs61809357	A	G	A	Hoxa9_MA0594.1	8	1	-	7.983126471253447	1.1098384211535577	GCCATAAATAT
chr1	180752142	180752143	chr1:180752143:G:A	rs7550031	G	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	180923185	180923186	chr1:180923186:T:C	rs537954307	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	181045102	181045103	chr1:181045103:C:G	rs3892173	C	G	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	181206051	181206052	chr1:181206052:T:A	rs779533367	T	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	181390096	181390097	chr1:181390097:C:T	rs631226	C	T	T	Hoxa9_MA0594.1	3	1	-	7.8637947703911975	10.845591197800056	GCAGTCAATCA
chr1	181482487	181482488	chr1:181482488:G:A	rs77185697	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	182186627	182186628	chr1:182186628:G:A	rs114049143	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	182244730	182244731	chr1:182244731:A:T	rs116669604	A	T	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	182332770	182332771	chr1:182332771:C:A	rs10436859	C	A	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	182348757	182348758	chr1:182348758:T:A	rs115895519	T	A	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	182601453	182601454	chr1:182601454:G:A	rs559816637	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	182668816	182668817	chr1:182668817:C:T	rs566124194	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	182699905	182699906	chr1:182699906:G:C	rs6695384	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	182973066	182973067	chr1:182973067:G:A	rs9425569	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	183039071	183039072	chr1:183039072:T:C	rs559515898	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	183059294	183059295	chr1:183059295:G:A	rs10797828	G	A	G	Hoxa9_MA0594.1	2	1	-	8.306671999370346	6.386340916243124	CCCATCCATCA
chr1	183243412	183243413	chr1:183243413:T:G	rs3768593	T	G	G	Hoxa9_MA0594.1	8	1	+	7.983126471253447	3.028230541314979	GCCATAAATAT
chr1	183304908	183304909	chr1:183304909:A:C	chr1:183304909:A:C	A	C	A	Hoxa9_MA0594.1	1	1	-	11.628996430268678	9.461778229732111	GTCATAAATCA
chr1	183488062	183488063	chr1:183488063:A:G	rs2702205	A	G	A	Hoxa9_MA0594.1	3	1	+	9.452499902096816	6.470703474687958	AACATAAATCA
chr1	183637266	183637267	chr1:183637267:G:A	rs59041516	G	A	G	Hoxa9_MA0594.1	9	1	-	8.814258917513376	6.1895456989291375	ACCATATATCA
chr1	183699670	183699671	chr1:183699671:G:A	rs12753772	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	183740074	183740075	chr1:183740075:A:G	rs10911428	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	183869870	183869871	chr1:183869871:T:C	rs9425326	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	184199675	184199676	chr1:184199676:G:A	rs10752934	G	A	A	Hoxa9_MA0594.1	0	1	-	10.084422038576625	7.539456693368356	CTAATAAATCA
chr1	184223283	184223284	chr1:184223284:C:T	rs10797943	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	184387841	184387842	chr1:184387842:T:G	chr1:184387842:T:G	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	184396062	184396063	chr1:184396063:C:T	rs16823101	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	184457354	184457355	chr1:184457355:T:A	rs58307611	T	A	t	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	184484461	184484462	chr1:184484462:G:A	rs10911599	G	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	184577428	184577429	chr1:184577429:C:T	rs4651222	C	T	C	Hoxa9_MA0594.1	9	1	+	10.159406543039145	7.534693324454906	GTCATAAATCT
chr1	184791298	184791299	chr1:184791299:C:T	rs7360	C	T	C	Hoxa9_MA0594.1	1	1	+	8.08407129645524	7.192521535344844	GCTATGAATCA
chr1	185208651	185208652	chr1:185208652:G:C	rs150628181	G	C	g	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	185500614	185500615	chr1:185500615:C:T	rs35321842	C	T	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	185550662	185550663	chr1:185550663:A:C	rs4142138	A	C	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	185862410	185862411	chr1:185862411:G:A	rs74134304	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	185956669	185956670	chr1:185956670:T:A	rs11586893	T	A	T	Hoxa9_MA0594.1	7	1	-	9.95404143668966	3.051107762986741	GTAATCAATCA
chr1	186153398	186153399	chr1:186153399:A:C	rs10911835	A	C	A	Hoxa9_MA0594.1	2	1	+	8.33117838756928	9.45271635848298	GCAATAAATAA
chr1	186375788	186375789	chr1:186375789:T:A	rs112597707	T	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	186579484	186579485	chr1:186579485:T:C	rs10911890	T	C	C	Hoxa9_MA0594.1	3	1	-	11.967129168713758	8.985332741304902	GCCATCAATCA
chr1	186700843	186700844	chr1:186700844:A:G	rs12119919	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	186976877	186976878	chr1:186976878:A:G	rs6690278	A	G	G	Hoxa9_MA0594.1	3	1	+	11.628996430268678	8.647200002859819	GTCATAAATCA
chr1	187210571	187210572	chr1:187210572:A:G	rs2224908	A	G	A	Hoxa9_MA0594.1	4	1	-	9.581365958804113	2.672611179488892	CCCATGAATCA
chr1	187490014	187490015	chr1:187490015:G:A	rs6692630	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	187786576	187786577	chr1:187786577:C:G	rs35057028	C	G	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	187908965	187908966	chr1:187908966:A:G	rs6692579	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	188281530	188281531	chr1:188281531:A:G	rs12029148	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	188354482	188354483	chr1:188354483:G:A	rs10798203	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	188365178	188365179	chr1:188365179:A:C	rs12742018	A	C	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	188707014	188707015	chr1:188707015:G:T	rs34021640	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	188707023	188707024	chr1:188707024:C:A	rs116138426	C	A	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	188707042	188707043	chr1:188707043:T:C	rs573094556	T	C	T	Hoxa9_MA0594.1	0	1	-	9.064232820513286	9.929418333235837	ACAATAAATCT
chr1	188761518	188761519	chr1:188761519:C:G	rs4503351	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	189675568	189675569	chr1:189675569:A:C	rs541251	A	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	189961402	189961403	chr1:189961403:A:C	rs879565	A	C	A	Hoxa9_MA0594.1	3	1	+	8.843479834418904	4.915265409939662	ATTATAAATCA
chr1	190686189	190686190	chr1:190686190:C:T	rs10920773	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	190707949	190707950	chr1:190707950:C:G	rs1325223	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	191022723	191022724	chr1:191022724:A:C	rs71637259	A	C	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	191022737	191022738	chr1:191022738:T:A	rs6656396	T	A	A	Hoxa9_MA0594.1	7	1	-	7.738551051121958	0.8356173774190387	CCAATACATCA
chr1	191222271	191222272	chr1:191222272:A:C	rs2368571	A	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	191346287	191346288	chr1:191346288:C:T	rs1246720	C	T	T	Hoxa9_MA0594.1	9	1	+	9.050786138279621	6.426072919695382	GCCATAAAACA
chr1	191663067	191663068	chr1:191663068:A:G	rs1336864	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	192420059	192420060	chr1:192420060:G:C	rs6665478	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	192530936	192530937	chr1:192530937:G:A	rs1535596	G	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	192559583	192559584	chr1:192559584:T:C	rs34362085	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	192636376	192636377	chr1:192636377:C:G	rs4233424	C	G	G	Hoxa9_MA0594.1	9	1	+	10.60021510825185	3.8018841465510036	GCTATAAATCA
chr1	192678768	192678769	chr1:192678769:G:T	rs2208960	G	T	t	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	192776648	192776649	chr1:192776649:G:T	rs10737616	G	T	g	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	192834675	192834676	chr1:192834676:A:C	rs35000062	A	C	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	192893503	192893504	chr1:192893504:C:T	rs1620819	C	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	193085354	193085355	chr1:193085355:T:C	rs10801173	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	194289762	194289763	chr1:194289763:T:C	rs141063818	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	195082466	195082467	chr1:195082467:C:A	rs1466657	C	A	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	195085402	195085403	chr1:195085403:T:C	rs1831473	T	C	C	Hoxa9_MA0594.1	8	1	+	8.477230437406968	1.6039423873070797	ACCATCAATTA
chr1	195466497	195466498	chr1:195466498:A:G	rs7517359	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	195754353	195754354	chr1:195754354:T:C	rs12067574	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	196071776	196071777	chr1:196071777:G:T	rs5009971	G	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	196098470	196098471	chr1:196098471:G:A	rs1253571898	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	196217204	196217205	chr1:196217205:G:A	rs71631848	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	196464826	196464827	chr1:196464827:G:C	rs77152348	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	196686612	196686613	chr1:196686613:A:C	rs10801553	A	C	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	196809728	196809729	chr1:196809729:C:T	rs1738736	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	196891604	196891605	chr1:196891605:G:A	rs7367184	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	197352309	197352310	chr1:197352310:C:T	rs10922200	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	197352320	197352321	chr1:197352321:A:G	rs10922201	A	G	A	Hoxa9_MA0594.1	7	1	+	9.7350295955293	2.83209592182638	ACTATAAATCA
chr1	198023481	198023482	chr1:198023482:G:A	rs538048156	G	A	G	Hoxa9_MA0594.1	10	1	-	9.634354527964561	10.627919883371188	CCCATAAATCC
chr1	198030777	198030778	chr1:198030778:A:G	rs6701977	A	G	A	Hoxa9_MA0594.1	10	1	+	8.497369115614307	1.8605961298615368	GCCATCAAACA
chr1	198086362	198086363	chr1:198086363:T:C	rs1233817	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	198291084	198291085	chr1:198291085:T:A	rs61436594	T	A	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	198487148	198487149	chr1:198487149:G:A	rs10801673	G	A	A	Hoxa9_MA0594.1	2	1	-	10.763810917546127	8.843479834418904	ATCATAAATCA
chr1	198487149	198487150	chr1:198487150:A:G	rs12025404	A	G	A	Hoxa9_MA0594.1	1	1	-	10.763810917546127	11.655360678656521	ATCATAAATCA
chr1	198487162	198487163	chr1:198487163:A:T	rs10801674	A	T	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	198668723	198668724	chr1:198668724:G:T	rs7522020	G	T	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	198762288	198762289	chr1:198762289:G:A	rs4915158	G	A	A	Hoxa9_MA0594.1	0	1	+	8.397354331692144	7.532168818969594	GATATAAATCA
chr1	198849323	198849324	chr1:198849324:T:A	rs147975454	T	A	T	Hoxa9_MA0594.1	6	1	-	7.5836428429503755	4.7425410818072296	GCTATCAATCC
chr1	198874871	198874872	chr1:198874872:T:A	rs2181371	T	A	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	199122570	199122571	chr1:199122571:T:G	rs10800609	T	G	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	199149584	199149585	chr1:199149585:G:A	rs16844287	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	199226456	199226457	chr1:199226457:C:T	rs7551857	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	199377376	199377377	chr1:199377377:G:A	rs79085061	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	199405359	199405360	chr1:199405360:C:A	rs661480	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	199567789	199567790	chr1:199567790:C:T	rs2786727	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	199704805	199704806	chr1:199704806:T:G	rs2435246	T	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	199743408	199743409	chr1:199743409:A:G	rs142249035	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	200079504	200079505	chr1:200079505:C:T	rs12031812	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	200079533	200079534	chr1:200079534:G:C	rs2821311	G	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	200173023	200173024	chr1:200173024:C:T	rs61826189	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	200247712	200247713	chr1:200247713:G:A	chr1:200247713:G:A	G	A	g	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	200373696	200373697	chr1:200373697:C:A	rs2153280	C	A	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	200734305	200734306	chr1:200734306:A:T	rs10494820	A	T	A	Hoxa9_MA0594.1	3	1	+	8.450866189019125	1.6081295464114365	GTCATCAATTA
chr1	200880490	200880491	chr1:200880491:G:T	rs11799920	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	200883866	200883867	chr1:200883867:G:A	rs10733064	G	A	G	Hoxa9_MA0594.1	0	1	+	9.95404143668966	9.08885592396711	GTAATCAATCA
chr1	200936157	200936158	chr1:200936158:G:T	rs539038815	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	201077250	201077251	chr1:201077251:T:G	rs925060	T	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	201077259	201077260	chr1:201077260:A:G	rs6672094	A	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	201180840	201180841	chr1:201180841:T:G	rs831765	T	G	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	201272341	201272342	chr1:201272342:A:C	rs753789873	A	C	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	201358307	201358308	chr1:201358308:C:G	rs7535327	C	G	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	201641118	201641119	chr1:201641119:A:G	rs862922	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	201720426	201720427	chr1:201720427:G:A	rs732815	G	A	a	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	201829521	201829522	chr1:201829522:T:A	rs11585549	T	A	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	201887392	201887393	chr1:201887393:C:G	rs10920270	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	201955774	201955775	chr1:201955775:T:A	rs148451063	T	A	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	201986900	201986901	chr1:201986901:C:T	rs61821529	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	202249720	202249721	chr1:202249721:C:T	rs566319235	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	202578209	202578210	chr1:202578210:A:G	rs562281998	A	G	A	Hoxa9_MA0594.1	10	1	+	9.196147443905666	2.559374458152897	GAAATAAATCA
chr1	202712005	202712006	chr1:202712006:C:G	rs61820945	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	202804973	202804974	chr1:202804974:T:C	rs4553255	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	202849780	202849781	chr1:202849781:A:C	rs16850586	A	C	A	Hoxa9_MA0594.1	3	1	+	8.773111023127315	4.844896598648074	CAAATAAATCA
chr1	203062642	203062643	chr1:203062643:T:C	rs112656610	T	C	t	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	203062673	203062674	chr1:203062674:G:A	rs1451649026	G	A	c	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	203073034	203073035	chr1:203073035:A:G	rs10800898	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	203089850	203089851	chr1:203089851:C:T	rs533532833	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	203239567	203239568	chr1:203239568:G:T	rs10920589	G	T	T	Hoxa9_MA0594.1	9	1	-	8.88286440866876	5.815034575772669	GCAATGAATCA
chr1	203401388	203401389	chr1:203401389:A:G	rs138912256	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	203452275	203452276	chr1:203452276:G:A	rs76716918	G	A	G	Hoxa9_MA0594.1	9	1	-	8.425059106811483	5.800345888227245	CACATAAATCT
chr1	203544473	203544474	chr1:203544474:G:C	rs4258271	G	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	203702150	203702151	chr1:203702151:C:T	rs78969040	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	203934224	203934225	chr1:203934225:C:G	rs2810652	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	203934227	203934228	chr1:203934228:G:T	rs2810651	G	T	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	204021125	204021126	chr1:204021126:C:A	rs76285481	C	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr1	204127175	204127176	chr1:204127176:G:A	rs564057147	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	204278259	204278260	chr1:204278260:T:C	rs55767546	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	204308404	204308405	chr1:204308405:G:A	rs4076664	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	204374056	204374057	chr1:204374057:C:T	rs61817877	C	T	c	Hoxa9_MA0594.1	5	1	+	7.2334010995627285	4.813262092233041	CCCATCTATCT
chr1	204456923	204456924	chr1:204456924:A:C	rs2999490	A	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr1	204528363	204528364	chr1:204528364:C:G	rs1476525954	C	G	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	204967764	204967765	chr1:204967765:A:G	rs149455685	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	205048074	205048075	chr1:205048075:A:G	rs76234711	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	205183467	205183468	chr1:205183468:C:T	rs3851287	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	205193928	205193929	chr1:205193929:A:G	rs10900468	A	G	A	Hoxa9_MA0594.1	8	1	+	7.581196251050087	6.096060374211071	GCCATAAAACT
chr1	205353648	205353649	chr1:205353649:T:C	rs4287234	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	205354785	205354786	chr1:205354786:A:C	rs140922296	A	C	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	205354896	205354897	chr1:205354897:G:A	rs7528225	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	205416369	205416370	chr1:205416370:C:T	rs6688045	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	205519854	205519855	chr1:205519855:G:A	rs55675283	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	205519870	205519871	chr1:205519871:G:A	rs12404390	G	A	G	Hoxa9_MA0594.1	1	1	-	10.185770791426988	9.294221030316594	ACCATAAATCT
chr1	205532856	205532857	chr1:205532857:T:G	rs6690686	T	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	205611187	205611188	chr1:205611188:T:C	rs4573566	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	205642951	205642952	chr1:205642952:T:G	rs12744379	T	G	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	205688248	205688249	chr1:205688249:T:C	rs76012422	T	C	T	Hoxa9_MA0594.1	10	1	+	9.506381912457487	8.51281655705086	CCAATAAATCT
chr1	205933954	205933955	chr1:205933955:G:A	rs1995007	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	206059137	206059138	chr1:206059138:G:T	rs28529397	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	206135056	206135057	chr1:206135057:T:C	rs4073317	T	C	.	Hoxa9_MA0594.1	4	1	+	7.864522907426146	0.9557681281109267	ACCATCCATCA
chr1	206486022	206486023	chr1:206486023:G:C	rs11118132	G	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	206575166	206575167	chr1:206575167:C:G	rs190350755	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr1	206580144	206580145	chr1:206580145:G:T	rs76883887	G	T	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr1	206580153	206580154	chr1:206580154:G:C	rs11119083	G	C	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	206672917	206672918	chr1:206672918:A:G	rs11119281	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	206928662	206928663	chr1:206928663:G:A	rs11283	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	206937017	206937018	chr1:206937018:A:G	rs748140	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	206940691	206940692	chr1:206940692:A:G	rs291090	A	G	A	Hoxa9_MA0594.1	3	1	+	7.854530172183207	4.872733744774348	GACATAAATCC
chr1	207697336	207697337	chr1:207697337:A:C	rs111340461	A	C	.	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	207737918	207737919	chr1:207737919:T:C	rs12096181	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	207791519	207791520	chr1:207791520:C:T	rs41318003	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	207964709	207964710	chr1:207964710:A:G	rs2745935	A	G	G	Hoxa9_MA0594.1	10	1	+	8.306671999370346	1.6698990136175773	CCCATCCATCA
chr1	208035716	208035717	chr1:208035717:A:T	rs600278	A	T	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr1	208058408	208058409	chr1:208058409:A:T	rs670077	A	T	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	208063928	208063929	chr1:208063929:G:A	rs11586515	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	208158303	208158304	chr1:208158304:A:C	rs11118996	A	C	A	Hoxa9_MA0594.1	6	1	+	9.080937505299248	5.843516756734186	CCCATCAATCC
chr1	208245885	208245886	chr1:208245886:G:A	rs1621023	G	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	208462858	208462859	chr1:208462859:G:A	rs55970022	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	208834847	208834848	chr1:208834848:T:A	rs1933545	T	A	T	Hoxa9_MA0594.1	10	1	-	8.702990986792262	7.2334010995627285	CCCATCTATCA
chr1	209395300	209395301	chr1:209395301:G:A	rs12119464	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr1	209457044	209457045	chr1:209457045:G:A	rs147091876	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	209486024	209486025	chr1:209486025:T:C	rs12072559	T	C	C	Hoxa9_MA0594.1	10	1	-	10.763810917546127	4.1270379317933585	ATCATAAATCA
chr1	209522892	209522893	chr1:209522893:T:G	rs28622149	T	G	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	209651553	209651554	chr1:209651554:G:A	rs3753522	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr1	209651572	209651573	chr1:209651573:C:T	rs192712352	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	209692998	209692999	chr1:209692999:A:T	rs190115625	A	T	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	209788066	209788067	chr1:209788067:A:G	rs79863693	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	209879674	209879675	chr1:209879675:G:A	rs190151627	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	209931397	209931398	chr1:209931398:A:T	rs4844502	A	T	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	210107499	210107500	chr1:210107500:T:A	rs10863810	T	A	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	210374064	210374065	chr1:210374065:T:C	rs952949452	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	210374107	210374108	chr1:210374108:G:A	rs77816980	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	210377194	210377195	chr1:210377195:T:A	rs7355019	T	A	T	Hoxa9_MA0594.1	10	1	-	10.084422038576625	8.614832151347091	CTAATAAATCA
chr1	210378198	210378199	chr1:210378199:C:T	rs12060228	C	T	C	Hoxa9_MA0594.1	3	1	-	7.64612345596233	10.627919883371188	CCCGTAAATCT
chr1	210441426	210441427	chr1:210441427:C:T	rs2206609	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	210554045	210554046	chr1:210554046:C:A	rs17016416	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	210598459	210598460	chr1:210598460:G:A	rs76660284	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	210648671	210648672	chr1:210648672:C:T	rs10863847	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	210757466	210757467	chr1:210757467:A:G	rs2185385	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	211229160	211229161	chr1:211229161:G:C	rs11806910	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	211305115	211305116	chr1:211305116:G:A	rs145973190	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	211564304	211564305	chr1:211564305:T:C	rs9430071	T	C	T	Hoxa9_MA0594.1	7	1	-	8.99912740272714	2.0961937290242205	TCCATCAATCA
chr1	211598688	211598689	chr1:211598689:C:T	rs6692675	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	211610266	211610267	chr1:211610267:C:A	rs9429875	C	A	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	211666935	211666936	chr1:211666936:T:C	rs1542140	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	211731993	211731994	chr1:211731994:G:A	rs115368200	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	211912100	211912101	chr1:211912101:T:C	rs17018170	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	212201993	212201994	chr1:212201994:G:A	rs1967114	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	212235631	212235632	chr1:212235632:A:C	rs12127954	A	C	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	212283894	212283895	chr1:212283895:T:C	rs6661987	T	C	T	Hoxa9_MA0594.1	7	1	-	7.8716420841461705	0.9687084104432495	CACATCAATCT
chr1	212284780	212284781	chr1:212284781:C:T	rs351412	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	212284784	212284785	chr1:212284785:C:T	rs76606646	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	212355526	212355527	chr1:212355527:C:T	rs12133636	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	212546138	212546139	chr1:212546139:C:T	rs581751	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	212584315	212584316	chr1:212584316:T:C	rs4543871	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	212586839	212586840	chr1:212586840:C:T	rs34004542	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	212586843	212586844	chr1:212586844:A:G	rs36061296	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	212681911	212681912	chr1:212681912:T:C	rs59877390	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	212860299	212860300	chr1:212860300:T:A	rs11120049	T	A	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	213668291	213668292	chr1:213668292:T:G	rs12031139	T	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	213688304	213688305	chr1:213688305:A:G	rs1509868	A	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	213725094	213725095	chr1:213725095:G:A	rs6656102	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	214003525	214003526	chr1:214003526:G:A	rs4282786	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr1	214188317	214188318	chr1:214188318:A:G	rs2919490	A	G	A	Hoxa9_MA0594.1	3	1	+	9.634354527964561	6.652558100555703	CCCATAAATCC
chr1	214188340	214188341	chr1:214188341:C:T	rs2196945	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr1	214328511	214328512	chr1:214328512:G:A	rs6660335	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	214380552	214380553	chr1:214380553:A:G	rs185028404	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	214430204	214430205	chr1:214430205:C:A	rs61819591	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	214542825	214542826	chr1:214542826:G:C	rs67483753	G	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	214553957	214553958	chr1:214553958:T:C	rs138967820	T	C	T	Hoxa9_MA0594.1	7	1	-	7.656437520341079	0.753503846638159	GCCATCTATCT
chr1	215022924	215022925	chr1:215022925:A:G	rs2601622	A	G	G	Hoxa9_MA0594.1	3	1	+	8.53481249235293	5.553016064944071	GCCATGAATCT
chr1	216409192	216409193	chr1:216409193:A:C	rs4431908	A	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	216749910	216749911	chr1:216749911:C:T	rs7515296	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	217388944	217388945	chr1:217388945:C:T	rs1497835	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	217578279	217578280	chr1:217578280:G:T	rs11117886	G	T	G	Hoxa9_MA0594.1	2	1	-	7.092706433297016	5.9711684623833134	CCCGTCAATCT
chr1	217600120	217600121	chr1:217600121:G:T	rs12116726	G	T	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	217660873	217660874	chr1:217660874:A:C	rs74727159	A	C	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	217682021	217682022	chr1:217682022:A:G	rs116386843	A	G	G	Hoxa9_MA0594.1	8	1	-	10.763810917546127	3.8905228674462373	ATCATAAATCA
chr1	217867931	217867932	chr1:217867932:G:A	chr1:217867932:G:A	G	A	G	Hoxa9_MA0594.1	1	1	-	8.431006454478752	7.539456693368356	TCAATAAATCA
chr1	217965138	217965139	chr1:217965139:G:A	rs10863361	G	A	A	Hoxa9_MA0594.1	0	1	+	11.075579407603364	10.210393894880813	GTCATCAATCA
chr1	217989732	217989733	chr1:217989733:G:A	rs10495091	G	A	G	Hoxa9_MA0594.1	9	1	-	8.689816197693718	6.065102979109478	CTCATGAATCA
chr1	217993764	217993765	chr1:217993765:T:C	rs10127946	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	218154203	218154204	chr1:218154204:G:A	rs4846463	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	218304947	218304948	chr1:218304948:T:C	chr1:218304948:T:C	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	218345142	218345143	chr1:218345143:A:G	rs933965340	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	218398414	218398415	chr1:218398415:A:T	rs61823428	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	218494302	218494303	chr1:218494303:C:T	rs56391225	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	218497014	218497015	chr1:218497015:T:C	rs622912	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	218517605	218517606	chr1:218517606:G:A	rs550238	G	A	G	Hoxa9_MA0594.1	0	1	+	7.991314647558364	7.126129134835814	GTAATGAATCA
chr1	218665489	218665490	chr1:218665490:C:T	rs1304589	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	218665533	218665534	chr1:218665534:C:T	rs4558049	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	218779577	218779578	chr1:218779578:C:T	rs6541208	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	218848219	218848220	chr1:218848220:A:G	rs544538701	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	218931251	218931252	chr1:218931252:G:C	chr1:218931252:G:C	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	219026984	219026985	chr1:219026985:C:A	rs1256576	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr1	219067190	219067191	chr1:219067191:G:C	rs183804194	G	C	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	219217862	219217863	chr1:219217863:T:C	rs1568804	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	219365723	219365724	chr1:219365724:C:T	rs7553882	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	219387692	219387693	chr1:219387693:C:T	rs946798	C	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	219439372	219439373	chr1:219439373:A:G	rs7524924	A	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	219442865	219442866	chr1:219442866:T:G	rs2168333	T	G	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	219444692	219444693	chr1:219444693:A:G	rs12747505	A	G	a	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	219463608	219463609	chr1:219463609:T:G	rs2820437	T	G	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	219926727	219926728	chr1:219926728:A:G	rs7525274	A	G	G	Hoxa9_MA0594.1	4	1	-	10.084422038576625	3.175667259261404	CTAATAAATCA
chr1	219961387	219961388	chr1:219961388:C:G	rs187334075	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	219961410	219961411	chr1:219961411:A:G	rs11118473	A	G	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	220734120	220734121	chr1:220734121:T:C	rs337181	T	C	c	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	221285143	221285144	chr1:221285144:G:A	rs35111176	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	221419875	221419876	chr1:221419876:G:T	rs17010007	G	T	G	Hoxa9_MA0594.1	1	1	-	9.980405685077507	7.7775449085177994	ACAATCAATCA
chr1	221431961	221431962	chr1:221431962:G:A	rs1031675	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	221478289	221478290	chr1:221478290:C:G	chr1:221478290:C:G	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr1	221634691	221634692	chr1:221634692:C:T	rs1342088	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	221670107	221670108	chr1:221670108:A:G	rs191342479	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	221720388	221720389	chr1:221720389:A:G	rs7541733	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	221740977	221740978	chr1:221740978:A:G	rs78887131	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	221757872	221757873	chr1:221757873:T:G	rs34104857	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	221772429	221772430	chr1:221772430:A:C	rs12030246	A	C	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	221802619	221802620	chr1:221802620:A:T	rs61823537	A	T	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	221882467	221882468	chr1:221882468:C:T	rs78133750	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr1	222225427	222225428	chr1:222225428:A:G	rs79769199	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	222225436	222225437	chr1:222225437:T:A	rs963335157	T	A	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	222783284	222783285	chr1:222783285:T:G	rs11490204	T	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr1	222783299	222783300	chr1:222783300:G:A	rs75204997	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	222804732	222804733	chr1:222804733:G:C	rs72742211	G	C	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	222915464	222915465	chr1:222915465:A:T	rs17163572	A	T	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	223049269	223049270	chr1:223049270:A:G	rs6604998	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr1	223175170	223175171	chr1:223175171:G:C	rs189813008	G	C	G	Hoxa9_MA0594.1	2	1	-	10.763810917546127	4.239910929797786	ATCATAAATCA
chr1	223350511	223350512	chr1:223350512:T:C	rs17163825	T	C	C	Hoxa9_MA0594.1	8	1	+	7.301113149517894	0.42782509941800395	GACATCAATCC
chr1	223350520	223350521	chr1:223350521:G:A	rs4661258	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr1	223500747	223500748	chr1:223500748:C:T	rs6702233	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	223500775	223500776	chr1:223500776:G:T	rs570011122	G	T	g	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	223639573	223639574	chr1:223639574:C:A	rs144578045	C	A	c	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	223674963	223674964	chr1:223674964:G:T	rs9887844	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	224379301	224379302	chr1:224379302:G:A	rs4654037	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	224499496	224499497	chr1:224499497:T:A	rs1891244	T	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	224622448	224622449	chr1:224622449:G:A	rs1025647847	G	A	g	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr1	224873714	224873715	chr1:224873715:C:T	rs114521912	C	T	C	Hoxa9_MA0594.1	10	1	+	9.165841187632518	10.159406543039145	GTCATAAATCC
chr1	224873726	224873727	chr1:224873727:A:G	rs2800230	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	224879593	224879594	chr1:224879594:G:A	rs111865011	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	224879624	224879625	chr1:224879625:C:A	rs77844670	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	224879628	224879629	chr1:224879629:C:T	rs2051158	C	T	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	225223498	225223499	chr1:225223499:C:A	rs675571	C	A	c	Hoxa9_MA0594.1	5	1	+	7.632183602891756	8.18560062555707	ACCATCAAACA
chr1	225612417	225612418	chr1:225612418:T:C	rs71646728	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	225707821	225707822	chr1:225707822:G:A	rs114369248	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	225897430	225897431	chr1:225897431:T:C	rs959680695	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	225970842	225970843	chr1:225970843:G:C	rs6426092	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr1	226364195	226364196	chr1:226364196:A:G	rs3219143	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	226408069	226408070	chr1:226408070:A:C	chr1:226408070:A:C	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	226511983	226511984	chr1:226511984:G:A	rs668222	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr1	226645906	226645907	chr1:226645907:G:A	rs3768371	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	226654532	226654533	chr1:226654533:C:T	rs3820637	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	227071950	227071951	chr1:227071951:T:C	rs10495264	T	C	T	Hoxa9_MA0594.1	3	1	-	8.4262430855653	5.444446658156442	GCCATAAATTT
chr1	227269211	227269212	chr1:227269212:A:C	rs145404541	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	227425408	227425409	chr1:227425409:G:A	rs182114386	G	A	G	Hoxa9_MA0594.1	2	1	-	8.027829768240773	6.107498685113551	CTCATCAATTA
chr1	227728067	227728068	chr1:227728068:T:C	rs550191180	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	227891490	227891491	chr1:227891491:C:T	rs10799454	C	T	C	Hoxa9_MA0594.1	3	1	-	8.647200002859819	11.628996430268678	GTCGTAAATCA
chr1	227919941	227919942	chr1:227919942:T:C	rs3856330	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	227934438	227934439	chr1:227934439:T:C	rs78590291	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	228131295	228131296	chr1:228131296:A:G	rs12093044	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	228131309	228131310	chr1:228131310:G:A	rs149288230	G	A	G	Hoxa9_MA0594.1	9	1	-	9.642272946632424	7.017559728048186	ATAATAAATCA
chr1	228146151	228146152	chr1:228146152:C:T	rs116587525	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr1	228206550	228206551	chr1:228206551:T:C	rs74456598	T	C	T	Hoxa9_MA0594.1	7	1	-	7.147364983124122	0.2444313094212025	GTCCTCAATCA
chr1	228245285	228245286	chr1:228245286:G:C	rs1757129	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr1	228333178	228333179	chr1:228333179:C:T	rs416564	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	228425350	228425351	chr1:228425351:T:C	rs1188474	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	228515587	228515588	chr1:228515588:A:G	rs1925714	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	229137627	229137628	chr1:229137628:A:G	rs9699623	A	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr1	229197233	229197234	chr1:229197234:G:C	rs2379987	G	C	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr1	229666803	229666804	chr1:229666804:T:C	rs879265	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr1	229772097	229772098	chr1:229772098:A:G	rs762579814	A	G	A	Hoxa9_MA0594.1	7	1	+	7.8716420841461705	0.9687084104432495	CACATCAATCT
chr1	229845875	229845876	chr1:229845876:G:T	rs528425	G	T	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	229970795	229970796	chr1:229970796:T:A	rs74145406	T	A	-	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	230056347	230056348	chr1:230056348:C:T	rs10082048	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	230131475	230131476	chr1:230131476:A:C	rs7544981	A	C	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	230173872	230173873	chr1:230173873:A:G	rs590820	A	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	230263560	230263561	chr1:230263561:A:C	rs41271491	A	C	A	Hoxa9_MA0594.1	4	1	-	7.541247136946303	0.6324923576310819	GCCATGAATCC
chr1	230300175	230300176	chr1:230300176:C:T	rs4846852	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	230300184	230300185	chr1:230300185:A:G	rs4846853	A	G	G	Hoxa9_MA0594.1	3	1	+	8.306671999370346	5.3248755719614875	CCCATCCATCA
chr1	230303196	230303197	chr1:230303197:T:C	rs545164374	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr1	230303234	230303235	chr1:230303235:A:T	rs542400734	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	230572115	230572116	chr1:230572116:G:T	rs80114319	G	T	G	Hoxa9_MA0594.1	1	1	-	8.58753084576043	6.384670069200725	ACCATAAATAA
chr1	230574449	230574450	chr1:230574450:A:G	rs73108011	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr1	230621233	230621234	chr1:230621234:G:A	rs76780797	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	230708526	230708527	chr1:230708527:T:C	rs2493133	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	230784082	230784083	chr1:230784083:T:G	rs11122601	T	G	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	230878669	230878670	chr1:230878670:A:G	rs141824845	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	231036939	231036940	chr1:231036940:T:C	rs11122199	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	231068958	231068959	chr1:231068959:G:C	rs10864664	G	C	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr1	231700194	231700195	chr1:231700195:C:A	rs11577035	C	A	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	231761460	231761461	chr1:231761461:T:C	rs17749164	T	C	T	Hoxa9_MA0594.1	4	1	+	6.982587615172259	0.07383283585703948	GCCATCACTCA
chr1	231827489	231827490	chr1:231827490:T:C	rs143535752	T	C	T	Hoxa9_MA0594.1	3	1	-	7.536004637837573	4.554208210428715	GCCATAACTCA
chr1	231827854	231827855	chr1:231827855:C:T	rs1000730	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	231990125	231990126	chr1:231990126:G:A	rs12564399	G	A	g	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	232039521	232039522	chr1:232039522:A:G	rs11122396	A	G	G	Hoxa9_MA0594.1	3	1	+	7.536004637837573	4.554208210428715	GCCATAACTCA
chr1	232090860	232090861	chr1:232090861:C:T	rs138033815	C	T	C	Hoxa9_MA0594.1	0	1	-	9.037868572125442	8.17268305940289	GTAATAAATCT
chr1	232175273	232175274	chr1:232175274:C:T	rs9727900	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	232319656	232319657	chr1:232319657:C:T	rs1338519	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr1	232319670	232319671	chr1:232319671:A:G	rs16856809	A	G	A	Hoxa9_MA0594.1	7	1	+	11.101943655991207	4.199009982288287	ACCATCAATCA
chr1	232405085	232405086	chr1:232405086:T:G	rs969957181	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	232435635	232435636	chr1:232435636:T:C	rs6424230	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr1	232472554	232472555	chr1:232472555:C:T	rs73095113	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	232487309	232487310	chr1:232487310:C:A	rs10910542	C	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr1	232521900	232521901	chr1:232521901:T:C	rs35186494	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr1	232621682	232621683	chr1:232621683:T:C	rs6424237	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	232804936	232804937	chr1:232804937:C:G	rs12092514	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	232804972	232804973	chr1:232804973:T:A	rs370198547	T	A	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	232822972	232822973	chr1:232822973:A:T	rs2814537	A	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	232825951	232825952	chr1:232825952:A:T	rs2795453	A	T	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	232902938	232902939	chr1:232902939:G:A	rs72757884	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	232910930	232910931	chr1:232910931:T:C	rs6424260	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	233241842	233241843	chr1:233241843:A:G	rs11809254	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	233254087	233254088	chr1:233254088:T:C	rs150891284	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	233261619	233261620	chr1:233261620:G:T	rs12122968	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	233332219	233332220	chr1:233332220:C:T	rs1294307	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr1	233435718	233435719	chr1:233435719:T:A	rs10910173	T	A	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	233790816	233790817	chr1:233790817:A:T	rs6689319	A	T	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr1	234030309	234030310	chr1:234030310:T:C	rs4575150	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	234116219	234116220	chr1:234116220:G:A	rs10910343	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	234279109	234279110	chr1:234279110:T:C	rs111483981	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr1	234279397	234279398	chr1:234279398:C:G	rs12045858	C	G	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	234473256	234473257	chr1:234473257:C:T	rs12090745	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	234518834	234518835	chr1:234518835:G:C	rs12066986	G	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	234666400	234666401	chr1:234666401:C:T	rs61824214	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	234676294	234676295	chr1:234676295:A:C	rs666923	A	C	A	Hoxa9_MA0594.1	8	1	-	7.656437520341079	2.7015415904026105	GCCATCTATCT
chr1	234692707	234692708	chr1:234692708:A:G	rs533239040	A	G	A	Hoxa9_MA0594.1	8	1	-	8.476262915039317	1.6029748649394273	CCCATCAATAA
chr1	234745886	234745887	chr1:234745887:G:A	rs150652010	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	234957182	234957183	chr1:234957183:C:T	rs73121187	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	234957195	234957196	chr1:234957196:T:C	rs2674001	T	C	T	Hoxa9_MA0594.1	4	1	+	8.592331766899832	1.6835769875846123	GCCCTAAATCA
chr1	235103240	235103241	chr1:235103241:C:G	rs3934953	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr1	235304617	235304618	chr1:235304618:T:C	rs11583468	T	C	T	Hoxa9_MA0594.1	8	1	+	10.60021510825185	3.7269270581519613	GCTATAAATCA
chr1	235304624	235304625	chr1:235304625:C:T	rs7553200	C	T	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	235392044	235392045	chr1:235392045:G:C	rs11584501	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	235634564	235634565	chr1:235634565:A:G	rs7554548	A	G	A	Hoxa9_MA0594.1	2	1	-	9.130625221022317	11.050956304149539	GCTATAAATCT
chr1	235880419	235880420	chr1:235880420:T:C	rs12751360	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr1	235924023	235924024	chr1:235924024:C:T	rs1885253	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr1	236044534	236044535	chr1:236044535:C:T	rs6660647	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	236075189	236075190	chr1:236075190:A:G	rs7521008	A	G	.	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	236146723	236146724	chr1:236146724:A:C	rs911271	A	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr1	236159683	236159684	chr1:236159684:C:T	rs12072586	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr1	236481048	236481049	chr1:236481049:C:G	rs6699044	C	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	236483390	236483391	chr1:236483391:T:C	rs879121648	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	236522752	236522753	chr1:236522753:G:A	rs10925158	G	A	A	Hoxa9_MA0594.1	0	1	+	8.13705986561569	7.271874352893139	GCTATAAATCC
chr1	236531856	236531857	chr1:236531857:T:C	rs73113014	T	C	T	Hoxa9_MA0594.1	3	1	-	11.39900822046537	8.417211793056513	GCAATAAATCA
chr1	236987675	236987676	chr1:236987676:G:A	rs1590100	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	237857684	237857685	chr1:237857685:T:G	rs2819754	T	G	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	237943091	237943092	chr1:237943092:C:G	rs16832101	C	G	g	Hoxa9_MA0594.1	0	1	+	8.773111023127315	9.196147443905666	CAAATAAATCA
chr1	238089076	238089077	chr1:238089077:C:T	rs12076048	C	T	c	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	238129096	238129097	chr1:238129097:G:A	rs7518258	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	238174158	238174159	chr1:238174159:G:C	rs12086345	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr1	238558946	238558947	chr1:238558947:T:C	rs10802705	T	C	T	Hoxa9_MA0594.1	3	1	-	8.232403979495325	5.250607552086466	CTCATTAATCA
chr1	238652961	238652962	chr1:238652962:A:C	rs6692722	A	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr1	238688294	238688295	chr1:238688295:G:A	rs10802712	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr1	238952295	238952296	chr1:238952296:G:T	rs78127462	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	238954535	238954536	chr1:238954536:G:A	rs191480447	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr1	238960582	238960583	chr1:238960583:T:C	rs74755901	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr1	238998736	238998737	chr1:238998737:C:T	rs9428812	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr1	239320045	239320046	chr1:239320046:T:C	rs12042595	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	239611710	239611711	chr1:239611711:A:G	rs147267673	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	239780226	239780227	chr1:239780227:G:A	rs1578176	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr1	239946680	239946681	chr1:239946681:A:T	rs72760788	A	T	a	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	240107351	240107352	chr1:240107352:A:G	rs558256836	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr1	240336938	240336939	chr1:240336939:T:A	rs72766283	T	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	240344111	240344112	chr1:240344112:C:T	rs4460624	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr1	240706317	240706318	chr1:240706318:C:T	rs77934106	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	240712526	240712527	chr1:240712527:G:T	rs61833746	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr1	240712977	240712978	chr1:240712978:A:G	rs10495474	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	241000100	241000101	chr1:241000101:C:T	rs653328	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr1	241028847	241028848	chr1:241028848:T:C	rs7524479	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr1	241706564	241706565	chr1:241706565:A:G	rs7417070	A	G	A	Hoxa9_MA0594.1	4	1	-	9.452499902096816	2.543745122781596	AACATAAATCA
chr1	241950595	241950596	chr1:241950596:A:G	rs28544076	A	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	242129491	242129492	chr1:242129492:C:T	rs1898153	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	242201322	242201323	chr1:242201323:A:G	rs112070498	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr1	242224546	242224547	chr1:242224547:C:G	rs4658772	C	G	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr1	242240383	242240384	chr1:242240384:A:G	rs150153579	A	G	A	Hoxa9_MA0594.1	4	1	-	9.7350295955293	2.826274816214079	ACTATAAATCA
chr1	242242601	242242602	chr1:242242602:C:T	rs454731	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr1	242675128	242675129	chr1:242675129:A:G	rs114136845	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr1	242675147	242675148	chr1:242675148:A:G	rs4658493	A	G	G	Hoxa9_MA0594.1	4	1	-	8.077400274154538	1.1686454948393166	GCCATTAATCT
chr1	242719665	242719666	chr1:242719666:C:G	rs184188436	C	G	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr1	242739312	242739313	chr1:242739313:A:G	rs6429371	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr1	242805526	242805527	chr1:242805527:T:G	rs55712180	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr1	242836633	242836634	chr1:242836634:C:T	rs12091799	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	242970024	242970025	chr1:242970025:C:T	rs4658523	C	T	.	Hoxa9_MA0594.1	5	1	+	7.147364983124122	4.727225975794434	GTCCTCAATCA
chr1	243180025	243180026	chr1:243180026:C:T	rs12402785	C	T	T	Hoxa9_MA0594.1	0	1	-	7.260118532919163	6.394933020196612	GCCATCCATCT
chr1	243351656	243351657	chr1:243351657:A:G	rs77240535	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	243596711	243596712	chr1:243596712:T:C	rs10159392	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	243792817	243792818	chr1:243792818:A:T	rs10927075	A	T	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr1	244035597	244035598	chr1:244035598:C:T	rs116200810	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	244057733	244057734	chr1:244057734:A:G	rs11590416	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr1	244060131	244060132	chr1:244060132:A:G	rs555973470	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr1	244063057	244063058	chr1:244063058:T:A	rs114248736	T	A	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr1	244330444	244330445	chr1:244330445:A:G	rs653542	A	G	G	Hoxa9_MA0594.1	3	1	+	6.837082112140813	3.8552856847319537	CCCATCCATCT
chr1	244355403	244355404	chr1:244355404:G:C	rs4498787	G	C	G	Hoxa9_MA0594.1	1	1	-	7.877589431813438	4.818821470166475	TCAATCAATCA
chr1	244673659	244673660	chr1:244673660:T:G	rs878964	T	G	.	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr1	244782798	244782799	chr1:244782799:G:A	rs56012464	G	A	G	Hoxa9_MA0594.1	0	1	+	8.497369115614307	7.632183602891756	GCCATCAAACA
chr1	244864765	244864766	chr1:244864766:G:A	rs776206126	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr1	245099802	245099803	chr1:245099803:A:T	rs4658697	A	T	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr1	245263058	245263059	chr1:245263059:T:G	rs1049496149	T	G	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr1	245437505	245437506	chr1:245437506:T:C	rs704649	T	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr1	245437583	245437584	chr1:245437584:A:G	rs138665794	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr1	245567263	245567264	chr1:245567264:C:T	rs116182432	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	245675339	245675340	chr1:245675340:A:G	rs10754469	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr1	245691559	245691560	chr1:245691560:G:A	rs4658797	G	A	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr1	245751968	245751969	chr1:245751969:T:G	rs2153400	T	G	T	Hoxa9_MA0594.1	3	1	-	8.497369115614307	4.569154691135066	GCCATCAAACA
chr1	245751970	245751971	chr1:245751971:G:C	rs2153401	G	C	C	Hoxa9_MA0594.1	1	1	-	8.497369115614307	5.438601153967346	GCCATCAAACA
chr1	245811268	245811269	chr1:245811269:T:C	rs80188533	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr1	246142595	246142596	chr1:246142596:A:G	rs73141339	A	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr1	246156179	246156180	chr1:246156180:A:G	rs4654092	A	G	A	Hoxa9_MA0594.1	7	1	+	7.66103487567689	0.7581012019739704	CCTATGAATCA
chr1	246177864	246177865	chr1:246177865:C:T	rs12125969	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr1	246232125	246232126	chr1:246232126:T:C	rs72774475	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr1	246252893	246252894	chr1:246252894:A:G	rs1780824	A	G	G	Hoxa9_MA0594.1	8	1	+	7.605819354503911	6.120683477664895	GTCATCAAACA
chr1	246364671	246364672	chr1:246364672:G:A	rs4654104	G	A	G	Hoxa9_MA0594.1	9	1	-	7.1129682170592226	4.488254998474984	CCCATAACTCA
chr1	246364681	246364682	chr1:246364682:A:G	rs4654244	A	G	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr1	246622145	246622146	chr1:246622146:C:A	rs3124077	C	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr1	247007959	247007960	chr1:247007960:G:A	chr1:247007960:G:A	G	A	g	Hoxa9_MA0594.1	21	0	+	0	0	.
chr1	247105122	247105123	chr1:247105123:C:G	rs80101344	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr1	247391429	247391430	chr1:247391430:G:C	rs2386549	G	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr1	247896976	247896977	chr1:247896977:C:T	rs10888270	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr1	248446110	248446111	chr1:248446111:G:A	rs951891	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr1	248758282	248758283	chr1:248758283:C:T	rs36141141	C	T	-	Hoxa9_MA0594.1	1	1	+	7.656437520341079	6.7648877592306835	GCCATCTATCT
chr1	248927033	248927034	chr1:248927034:C:T	chr1:248927034:C:T	C	T	c	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	106109	106110	chr10:106110:C:G	rs9286071	C	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	423539	423540	chr10:423540:C:T	rs61837188	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	454951	454952	chr10:454952:T:C	rs35476671	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	482614	482615	chr10:482615:A:G	rs75564266	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	488753	488754	chr10:488754:G:A	rs139350494	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	539154	539155	chr10:539155:C:T	rs72478223	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	683794	683795	chr10:683795:C:T	rs79919851	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	683821	683822	chr10:683822:A:C	rs1890677	A	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	729324	729325	chr10:729325:A:G	rs17293489	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	1362885	1362886	chr10:1362886:C:T	rs78666830	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	1413499	1413500	chr10:1413500:A:C	rs112696988	A	C	a	Hoxa9_MA0594.1	6	1	+	9.030647460072283	5.793226711507222	ACCATAAATTA
chr10	1414581	1414582	chr10:1414582:C:T	rs192621282	C	T	t	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	1552105	1552106	chr10:1552106:A:T	rs10736942	A	T	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	1552138	1552139	chr10:1552139:T:C	rs7070465	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	1580228	1580229	chr10:1580229:A:G	rs11815041	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	1627216	1627217	chr10:1627217:G:A	rs1875008	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	1650237	1650238	chr10:1650238:G:T	rs4880899	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	1663487	1663488	chr10:1663488:C:T	rs55873172	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	1663490	1663491	chr10:1663491:G:A	rs35403584	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	1923901	1923902	chr10:1923902:G:A	rs12766442	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr10	2020457	2020458	chr10:2020458:A:G	rs572078562	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	2046198	2046199	chr10:2046199:C:T	rs10903647	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr10	2122823	2122824	chr10:2122824:T:C	rs10903679	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	2249437	2249438	chr10:2249438:T:G	rs2065527	T	G	t	Hoxa9_MA0594.1	10	1	-	7.618418680842992	5.155263438206831	GCTGTAAATCA
chr10	2445620	2445621	chr10:2445621:T:C	rs145955403	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	2508954	2508955	chr10:2508955:G:C	rs2452187	G	C	C	Hoxa9_MA0594.1	0	1	+	9.538749763970214	9.115713343191864	GCCGTAAATCA
chr10	2585227	2585228	chr10:2585228:C:T	rs72771199	C	T	c	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	2734617	2734618	chr10:2734618:C:T	rs1334703	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr10	2813654	2813655	chr10:2813655:C:T	rs10903868	C	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	2898021	2898022	chr10:2898022:C:T	rs6601991	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	2898056	2898057	chr10:2898057:T:A	rs55804005	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	2923995	2923996	chr10:2923996:A:G	rs1909682	A	G	G	Hoxa9_MA0594.1	6	1	+	8.154171777578652	1.336570991822995	CCTATCAATCT
chr10	2929705	2929706	chr10:2929706:C:A	rs2936895	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	3045574	3045575	chr10:3045575:T:A	rs115515701	T	A	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	3045603	3045604	chr10:3045604:C:T	rs7083428	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	3045604	3045605	chr10:3045605:G:A	rs528423059	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	3148604	3148605	chr10:3148605:T:C	rs2291103	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	3149334	3149335	chr10:3149335:T:C	rs2388557	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr10	3214926	3214927	chr10:3214927:G:A	rs34781940	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	3282215	3282216	chr10:3282216:C:G	rs12415965	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	3292868	3292869	chr10:3292869:T:C	rs12766986	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	3418685	3418686	chr10:3418686:T:G	chr10:3418686:T:G	T	G	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	3459165	3459166	chr10:3459166:C:T	rs11251903	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	3464343	3464344	chr10:3464344:A:T	chr10:3464344:A:T	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	3482561	3482562	chr10:3482562:G:A	rs7923379	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	3665166	3665167	chr10:3665167:T:C	rs7912146	T	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	3750651	3750652	chr10:3750652:G:C	rs2129440	G	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	3788345	3788346	chr10:3788346:A:G	rs10904095	A	G	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	3807390	3807391	chr10:3807391:G:C	rs11593360	G	C	C	Hoxa9_MA0594.1	2	1	-	7.529537515497607	1.0056375277492673	TCCATCAATCT
chr10	3836121	3836122	chr10:3836122:G:C	rs7915257	G	C	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	3939668	3939669	chr10:3939669:C:T	rs11252201	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	3960754	3960755	chr10:3960755:C:T	rs4593901	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	3968916	3968917	chr10:3968917:T:C	rs114734660	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	3980257	3980258	chr10:3980258:C:T	rs4880653	C	T	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	4073808	4073809	chr10:4073809:C:A	rs12268483	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	4073830	4073831	chr10:4073831:T:C	rs140153734	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	4260670	4260671	chr10:4260671:T:C	rs12414707	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	4260800	4260801	chr10:4260801:T:C	rs10904213	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	4405894	4405895	chr10:4405895:G:T	rs76666402	G	T	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	4544109	4544110	chr10:4544110:G:A	rs313476	G	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	4669570	4669571	chr10:4669571:A:G	rs115663192	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	4736200	4736201	chr10:4736201:C:T	rs11252692	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	4944760	4944761	chr10:4944761:C:T	rs4300303	C	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr10	5446990	5446991	chr10:5446991:T:C	chr10:5446991:T:C	T	C	T	Hoxa9_MA0594.1	5	1	-	9.894648994041017	7.378505182244407	CACATAAATCA
chr10	5484411	5484412	chr10:5484412:C:T	rs11595157	C	T	c	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	5530929	5530930	chr10:5530930:C:T	rs7095575	C	T	T	Hoxa9_MA0594.1	6	1	+	7.813535555584478	8.209854543006394	GCCATACATCT
chr10	5563749	5563750	chr10:5563750:C:G	rs4880733	C	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	5563770	5563771	chr10:5563771:C:T	rs74416291	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	5580462	5580463	chr10:5580463:T:C	rs72781967	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	5583050	5583051	chr10:5583051:A:T	rs7909015	A	T	T	Hoxa9_MA0594.1	6	1	+	8.45982798789041	5.618726226747264	CCAATGAATCA
chr10	5583057	5583058	chr10:5583058:G:C	rs7923141	G	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	5632562	5632563	chr10:5632563:G:A	rs117143307	G	A	N	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	5684289	5684290	chr10:5684290:G:A	rs11596406	G	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	5812429	5812430	chr10:5812430:C:T	rs7902987	C	T	C	Hoxa9_MA0594.1	9	1	+	7.608170449234994	4.983457230650756	GCAATCCATCA
chr10	5815515	5815516	chr10:5815516:G:T	rs61016063	G	T	C	Hoxa9_MA0594.1	5	1	-	8.908361207066799	9.461778229732111	GGCATCAATCA
chr10	5841201	5841202	chr10:5841202:A:G	rs2137422	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	5841228	5841229	chr10:5841229:G:C	rs1106039	G	C	c	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	5919810	5919811	chr10:5919811:A:T	rs596156	A	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	6095995	6095996	chr10:6095996:A:G	rs60859211	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	6166501	6166502	chr10:6166502:T:C	rs652318	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	6309997	6309998	chr10:6309998:G:T	rs17153511	G	T	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	6314692	6314693	chr10:6314693:A:T	rs117249483	A	T	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	6433735	6433736	chr10:6433736:A:C	rs10906557	A	C	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	6499960	6499961	chr10:6499961:T:C	rs11259245	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	6642817	6642818	chr10:6642818:T:C	rs11253763	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	6882155	6882156	chr10:6882156:C:T	rs17401968	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	6912545	6912546	chr10:6912546:G:C	rs952725002	G	C	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	6912584	6912585	chr10:6912585:T:C	rs9423991	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	6912585	6912586	chr10:6912586:C:T	rs866715419	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	6955250	6955251	chr10:6955251:G:A	rs870871	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr10	6961461	6961462	chr10:6961462:A:T	rs1538730	A	T	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	7160180	7160181	chr10:7160181:G:A	rs41290245	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	7268340	7268341	chr10:7268341:T:C	rs7908189	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	7311480	7311481	chr10:7311481:C:A	rs10905151	C	A	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	7350873	7350874	chr10:7350874:T:G	rs10795542	T	G	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	7375305	7375306	chr10:7375306:G:T	rs12762272	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	7432966	7432967	chr10:7432967:T:C	rs2253682	T	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	7457565	7457566	chr10:7457566:G:T	rs2248165	G	T	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	7494220	7494221	chr10:7494221:C:G	rs67886067	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	7494252	7494253	chr10:7494253:G:T	rs2388138	G	T	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	7654677	7654678	chr10:7654678:A:G	rs7091139	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	8097787	8097788	chr10:8097788:G:C	rs80093646	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	8123276	8123277	chr10:8123277:A:T	rs193176374	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	8159821	8159822	chr10:8159822:C:T	rs7098651	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	8350865	8350866	chr10:8350866:C:T	rs113769900	C	T	C	Hoxa9_MA0594.1	9	1	+	7.163300618439317	4.5385873998550785	GCCATGTATCA
chr10	8350874	8350875	chr10:8350875:T:C	rs11255649	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	8534197	8534198	chr10:8534198:C:T	rs17143959	C	T	C	Hoxa9_MA0594.1	0	1	+	8.614832151347091	6.069866806138823	CTAATAAATCT
chr10	8703456	8703457	chr10:8703457:T:C	rs1970170	T	C	T	Hoxa9_MA0594.1	2	1	-	8.88286440866876	3.480502391834123	GCAATGAATCA
chr10	8903190	8903191	chr10:8903191:T:C	rs1444781	T	C	C	Hoxa9_MA0594.1	0	1	-	8.043175694344246	8.908361207066799	AGCATCAATCA
chr10	8985839	8985840	chr10:8985840:A:T	rs10905497	A	T	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	9018493	9018494	chr10:9018494:C:A	rs768991	C	A	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	9057337	9057338	chr10:9057338:A:G	rs2797287	A	G	G	Hoxa9_MA0594.1	0	1	+	9.064232820513286	9.929418333235837	ACAATAAATCT
chr10	9065171	9065172	chr10:9065172:G:A	rs17145169	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	9245157	9245158	chr10:9245158:G:A	rs75383719	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	9533386	9533387	chr10:9533387:C:T	rs11256253	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	9579282	9579283	chr10:9579283:C:G	rs11256264	C	G	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	9609280	9609281	chr10:9609281:A:G	rs11592618	A	G	G	Hoxa9_MA0594.1	2	1	-	8.08407129645524	10.004402379582464	GCTATGAATCA
chr10	9621442	9621443	chr10:9621443:A:G	rs4747833	A	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr10	9710081	9710082	chr10:9710082:T:C	rs34499326	T	C	T	Hoxa9_MA0594.1	3	1	-	8.66099466428206	5.6791982368732	TTCATAAATCA
chr10	9897070	9897071	chr10:9897071:G:A	rs4142059	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	9926932	9926933	chr10:9926933:A:G	rs55662684	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	10120727	10120728	chr10:10120728:A:G	rs12254133	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	10157224	10157225	chr10:10157225:A:C	rs10795759	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	10188430	10188431	chr10:10188431:A:G	rs2819041	A	G	A	Hoxa9_MA0594.1	6	1	+	8.29006281175359	1.4724620259979324	ATTATCAATCA
chr10	10365065	10365066	chr10:10365066:G:A	rs928520	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	10668303	10668304	chr10:10668304:G:T	rs111346479	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	10680649	10680650	chr10:10680650:C:T	rs1359889	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	10680694	10680695	chr10:10680695:C:T	rs1359888	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	10826454	10826455	chr10:10826455:A:G	rs6602455	A	G	A	Hoxa9_MA0594.1	7	1	+	8.33117838756928	1.4282447138663592	GCAATAAATAA
chr10	10831431	10831432	chr10:10831432:C:G	rs953962660	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	10871010	10871011	chr10:10871011:T:G	rs7068620	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	10920132	10920133	chr10:10920133:C:T	rs10905865	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	11024849	11024850	chr10:11024850:T:A	rs7073548	T	A	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	11264785	11264786	chr10:11264786:G:T	rs2379112	G	T	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	11264788	11264789	chr10:11264789:A:G	rs2765988	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	11277280	11277281	chr10:11277281:A:G	rs17150017	A	G	A	Hoxa9_MA0594.1	7	1	+	10.497539281484224	3.5946056077813044	GCCATCAATCT
chr10	11279636	11279637	chr10:11279637:A:G	rs7076080	A	G	a	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	11283643	11283644	chr10:11283644:T:C	rs73581237	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	11283903	11283904	chr10:11283904:C:G	rs7078270	C	G	C	Hoxa9_MA0594.1	0	1	-	7.838158659038301	7.415122238259951	GTCATCCATCA
chr10	11284090	11284091	chr10:11284091:T:A	rs865982956	T	A	-	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	11284240	11284241	chr10:11284241:G:T	rs1280604601	G	T	-	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	11306048	11306049	chr10:11306049:C:T	rs114634342	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	11442389	11442390	chr10:11442390:G:A	rs2499910	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	11683372	11683373	chr10:11683373:A:G	rs34121878	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	11719526	11719527	chr10:11719527:T:G	rs77721181	T	G	T	Hoxa9_MA0594.1	6	1	-	9.02967993770463	5.792259189139569	CCCATAAATAA
chr10	11725741	11725742	chr10:11725742:G:A	rs117840128	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	11773803	11773804	chr10:11773804:C:A	rs7080682	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	11773845	11773846	chr10:11773846:G:A	rs12245566	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	11782850	11782851	chr10:11782851:C:A	rs7098491	C	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	11783616	11783617	chr10:11783617:A:G	rs10508431	A	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	11825463	11825464	chr10:11825464:A:G	rs61846304	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	11913338	11913339	chr10:11913339:A:G	rs80157155	A	G	A	Hoxa9_MA0594.1	10	1	+	8.169295346121482	1.5325223603687128	CCCCTAAATCA
chr10	11913345	11913346	chr10:11913346:G:A	rs72775983	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr10	12121741	12121742	chr10:12121742:A:T	rs12766360	A	T	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	12180556	12180557	chr10:12180557:C:A	chr10:12180557:C:A	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	12180556	12180557	chr10:12180557:C:T	rs3780865	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	12414880	12414881	chr10:12414881:T:G	rs74328894	T	G	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	12455581	12455582	chr10:12455582:T:C	rs2104588	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	12526430	12526431	chr10:12526431:T:A	rs2815645	T	A	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	12542513	12542514	chr10:12542514:T:C	rs2815637	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	12613293	12613294	chr10:12613294:C:T	rs75237116	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	12634288	12634289	chr10:12634289:T:C	rs72771758	T	C	T	Hoxa9_MA0594.1	3	1	-	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr10	12783596	12783597	chr10:12783597:C:T	rs12248437	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	13046914	13046915	chr10:13046915:T:G	rs72777491	T	G	T	Hoxa9_MA0594.1	6	1	-	9.037868572125442	5.800447823560379	GTAATAAATCT
chr10	13617163	13617164	chr10:13617164:G:A	rs76256462	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	13686337	13686338	chr10:13686338:C:T	rs729292	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	13746218	13746219	chr10:13746219:T:C	rs4750404	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	13750991	13750992	chr10:13750992:T:C	rs3949883	T	C	T	Hoxa9_MA0594.1	7	1	-	10.97597179968702	4.0730381259841	CCAATAAATCA
chr10	13860659	13860660	chr10:13860660:C:G	rs61833457	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	13890495	13890496	chr10:13890496:G:A	rs115915474	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	13978941	13978942	chr10:13978942:T:C	rs73587371	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	14009148	14009149	chr10:14009149:C:A	rs76099388	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	14020897	14020898	chr10:14020898:G:A	rs10906571	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	14072183	14072184	chr10:14072184:A:G	rs1000962	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	14081044	14081045	chr10:14081045:G:T	rs735439	G	T	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	14235521	14235522	chr10:14235522:T:G	rs10796174	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	14296726	14296727	chr10:14296727:G:C	rs913816	G	C	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	14326831	14326832	chr10:14326832:G:T	rs1218444	G	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	14458102	14458103	chr10:14458103:G:A	rs7910798	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	14462769	14462770	chr10:14462770:G:C	rs2400078	G	C	G	Hoxa9_MA0594.1	0	1	-	6.837082112140813	7.260118532919163	CCCATCCATCT
chr10	14468405	14468406	chr10:14468406:G:A	rs73597397	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	14554647	14554648	chr10:14554648:G:A	rs116051448	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	14562783	14562784	chr10:14562784:C:T	rs80309617	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	14562785	14562786	chr10:14562786:C:T	rs78008522	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	14605463	14605464	chr10:14605464:T:C	rs75133650	T	C	T	Hoxa9_MA0594.1	7	1	-	9.02967993770463	2.126746264001711	CCCATAAATAA
chr10	15008409	15008410	chr10:15008410:T:C	rs11259429	T	C	-	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	15093100	15093101	chr10:15093101:A:G	rs11259483	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	15123821	15123822	chr10:15123822:G:A	rs542099638	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	15170318	15170319	chr10:15170319:G:A	rs148420303	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	15431480	15431481	chr10:15431481:C:T	rs11598396	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	15562329	15562330	chr10:15562330:C:T	rs12772678	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	15755198	15755199	chr10:15755199:A:G	rs7905319	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr10	15769122	15769123	chr10:15769123:T:G	rs143123247	T	G	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	15961890	15961891	chr10:15961891:C:T	rs146024629	C	T	c	Hoxa9_MA0594.1	27	0	-	0	0	.
chr10	16193618	16193619	chr10:16193619:C:T	rs10795356	C	T	T	Hoxa9_MA0594.1	1	1	-	8.043175694344246	8.899082879431504	AGCATCAATCA
chr10	16563212	16563213	chr10:16563213:C:G	rs11254078	C	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	16854806	16854807	chr10:16854807:A:G	rs78749332	A	G	G	Hoxa9_MA0594.1	7	1	+	7.565650261440604	0.6627165877376848	GCCATAAAGCA
chr10	16892144	16892145	chr10:16892145:T:C	chr10:16892145:T:C	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	16950132	16950133	chr10:16950133:T:G	rs74668791	T	G	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	16988854	16988855	chr10:16988855:T:C	rs2942366	T	C	T	Hoxa9_MA0594.1	8	1	+	7.6543638533761875	0.7810758032762974	CCCATTAATCT
chr10	17125422	17125423	chr10:17125423:G:A	rs7916688	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	17201289	17201290	chr10:17201290:T:C	rs143754388	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	17202307	17202308	chr10:17202308:G:T	rs17466418	G	T	G	Hoxa9_MA0594.1	1	1	-	9.02967993770463	6.826819161144925	CCCATAAATAA
chr10	17207487	17207488	chr10:17207488:C:A	rs7089849	C	A	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	17385392	17385393	chr10:17385393:T:C	rs113772329	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	17406345	17406346	chr10:17406346:T:G	rs77982192	T	G	T	Hoxa9_MA0594.1	4	1	+	8.00320666478695	1.0944518854717296	CCCATAAATTT
chr10	17464021	17464022	chr10:17464022:G:C	rs12266303	G	C	C	Hoxa9_MA0594.1	0	1	+	6.982587615172259	6.559551194393908	GCCATCACTCA
chr10	17544609	17544610	chr10:17544610:T:C	rs12255594	T	C	T	Hoxa9_MA0594.1	5	1	-	10.60021510825185	8.08407129645524	GCTATAAATCA
chr10	17562420	17562421	chr10:17562421:A:G	rs2154258	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	17653184	17653185	chr10:17653185:A:G	rs77537869	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	17769288	17769289	chr10:17769289:T:C	chr10:17769289:T:C	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	17924366	17924367	chr10:17924367:G:A	rs375477285	G	A	g	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	17954933	17954934	chr10:17954934:C:A	rs692635	C	A	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	18005796	18005797	chr10:18005797:C:G	rs2437273	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	18096712	18096713	chr10:18096713:T:G	rs11597102	T	G	-	Hoxa9_MA0594.1	2	1	-	9.376001310570523	10.497539281484224	GCAATCAATCT
chr10	18096730	18096731	chr10:18096731:A:T	rs951546494	A	T	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	18203026	18203027	chr10:18203027:A:C	rs1277757	A	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	18578886	18578887	chr10:18578887:G:T	rs11014981	G	T	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	18658870	18658871	chr10:18658871:T:A	rs117263453	T	A	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	18918612	18918613	chr10:18918613:G:C	rs1887923	G	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	19246334	19246335	chr10:19246335:G:T	rs73593858	G	T	G	Hoxa9_MA0594.1	1	1	-	8.18560062555707	5.982739848997364	ACCATAAAACA
chr10	19412756	19412757	chr10:19412757:C:T	chr10:19412757:C:T	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	19638994	19638995	chr10:19638995:C:T	rs79711488	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	20180866	20180867	chr10:20180867:A:G	rs10827986	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	20193300	20193301	chr10:20193301:G:C	rs11011853	G	C	G	Hoxa9_MA0594.1	9	1	-	9.123953740605721	2.325622778904873	CCCATTAATCA
chr10	20315447	20315448	chr10:20315448:G:T	rs11011957	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	20356049	20356050	chr10:20356050:T:C	rs4501895	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	20371404	20371405	chr10:20371405:T:G	rs61704976	T	G	T	Hoxa9_MA0594.1	3	1	-	8.34024025881841	4.412025834339168	GGAATAAATCA
chr10	20371426	20371427	chr10:20371427:C:A	rs11012006	C	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	20454218	20454219	chr10:20454219:T:G	rs10828054	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	20454224	20454225	chr10:20454225:T:A	rs7911565	T	A	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	20990961	20990962	chr10:20990962:C:A	chr10:20990962:C:A	C	A	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	21089668	21089669	chr10:21089669:T:A	rs1977449	T	A	T	Hoxa9_MA0594.1	7	1	-	9.623761664808185	2.7208279911052657	CCTATCAATCA
chr10	21285810	21285811	chr10:21285811:C:T	rs7070580	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	21340469	21340470	chr10:21340470:A:C	rs188947084	A	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	21363028	21363029	chr10:21363029:C:T	rs57816128	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	21363051	21363052	chr10:21363052:G:A	rs58809874	G	A	A	Hoxa9_MA0594.1	2	1	-	10.652542986825011	8.73221190369779	CTCATCAATCA
chr10	21454732	21454733	chr10:21454733:C:T	rs10508638	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	22684187	22684188	chr10:22684188:G:C	rs12246676	G	C	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr10	22874248	22874249	chr10:22874249:A:G	rs11013167	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	22987870	22987871	chr10:22987871:G:A	rs7084760	G	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	23203321	23203322	chr10:23203322:C:T	rs537822412	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	23494058	23494059	chr10:23494059:G:A	rs80077568	G	A	g	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	23572206	23572207	chr10:23572207:G:A	rs10764404	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	23585476	23585477	chr10:23585477:G:A	rs12257107	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	24168661	24168662	chr10:24168662:C:T	rs113256255	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	24196339	24196340	chr10:24196340:C:T	rs10741048	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	24239047	24239048	chr10:24239048:T:G	chr10:24239048:T:G	T	G	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	24266888	24266889	chr10:24266889:T:C	rs6482381	T	C	t	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	24389097	24389098	chr10:24389098:A:G	rs6482391	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	24393096	24393097	chr10:24393097:C:T	rs114090865	C	T	c	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	24428631	24428632	chr10:24428632:C:T	rs12766881	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	24502493	24502494	chr10:24502494:G:A	rs1556404	G	A	A	Hoxa9_MA0594.1	3	1	+	7.64612345596233	10.627919883371188	CCCGTAAATCT
chr10	24822257	24822258	chr10:24822258:G:T	rs111490693	G	T	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	24858512	24858513	chr10:24858513:C:T	rs113598721	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	25438605	25438606	chr10:25438606:G:A	rs1773656	G	A	G	Hoxa9_MA0594.1	5	1	-	7.8728260628999855	5.452687055570299	GCCATCAATTT
chr10	25628833	25628834	chr10:25628834:G:A	rs12249396	G	A	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	25898993	25898994	chr10:25898994:T:C	rs11014841	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	26215757	26215758	chr10:26215758:A:G	rs8190586	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	26507880	26507881	chr10:26507881:A:G	rs787033	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	26524383	26524384	chr10:26524384:T:G	rs787060	T	G	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	26575245	26575246	chr10:26575246:C:T	rs111854894	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	26665092	26665093	chr10:26665093:G:C	rs2489567	G	C	N	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	26665122	26665123	chr10:26665123:A:G	rs34814552	A	G	a	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	26944465	26944466	chr10:26944466:T:C	rs77888732	T	C	T	Hoxa9_MA0594.1	4	1	+	7.7868232361530945	0.8780684568378745	GGAATCAATCA
chr10	26944468	26944469	chr10:26944469:A:G	rs79711118	A	G	A	Hoxa9_MA0594.1	7	1	+	7.7868232361530945	0.8838895624501748	GGAATCAATCA
chr10	27157842	27157843	chr10:27157843:A:T	rs73598036	A	T	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	27434103	27434104	chr10:27434104:C:T	rs7342136	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	27458131	27458132	chr10:27458132:C:T	rs641792	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	27774425	27774426	chr10:27774426:T:G	rs2815490	T	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	28254786	28254787	chr10:28254787:C:T	rs11006956	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	28254805	28254806	chr10:28254806:G:T	rs11006957	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	28682708	28682709	chr10:28682709:A:G	rs571227675	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr10	28995805	28995806	chr10:28995806:T:A	rs11007345	T	A	T	Hoxa9_MA0594.1	3	1	-	9.196147443905666	2.3534108012979766	GAAATAAATCA
chr10	29008337	29008338	chr10:29008338:G:C	rs11007361	G	C	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	29008342	29008343	chr10:29008343:G:C	rs11007362	G	C	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	29102366	29102367	chr10:29102367:C:A	rs1015252114	C	A	C	Hoxa9_MA0594.1	9	1	+	8.45982798789041	5.391998154994319	CCAATGAATCA
chr10	29209235	29209236	chr10:29209236:G:A	rs475066	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	29243221	29243222	chr10:29243222:C:T	rs11007480	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	29344678	29344679	chr10:29344679:G:A	rs79573091	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	29496261	29496262	chr10:29496262:G:A	rs11007625	G	A	a	Hoxa9_MA0594.1	1	1	-	11.101943655991207	10.210393894880813	ACCATCAATCA
chr10	29583656	29583657	chr10:29583657:A:G	chr10:29583657:A:G	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	29588032	29588033	chr10:29588033:A:T	rs188468466	A	T	A	Hoxa9_MA0594.1	4	1	-	8.425452190470368	1.5166974111551483	GCAATTAATCA
chr10	29588035	29588036	chr10:29588036:G:T	rs192311900	G	T	G	Hoxa9_MA0594.1	1	1	-	8.425452190470368	6.222591413910663	GCAATTAATCA
chr10	29604574	29604575	chr10:29604575:T:C	rs2505905	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	29627848	29627849	chr10:29627849:A:G	rs17768419	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	29719336	29719337	chr10:29719337:T:A	rs57203451	T	A	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	29733621	29733622	chr10:29733622:G:A	rs7913784	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	29773727	29773728	chr10:29773728:C:A	rs74130126	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	29993777	29993778	chr10:29993778:T:C	rs117919397	T	C	T	Hoxa9_MA0594.1	7	1	-	8.107577641616745	1.204643967913824	TTCATCAATCA
chr10	29993785	29993786	chr10:29993786:A:G	rs11007847	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	30062083	30062084	chr10:30062084:G:A	rs147651271	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	30062095	30062096	chr10:30062096:T:A	rs73598344	T	A	T	Hoxa9_MA0594.1	8	1	+	8.417211793056513	4.94745173995706	GCAGTAAATCA
chr10	30124179	30124180	chr10:30124180:A:G	rs2478838	A	G	A	Hoxa9_MA0594.1	10	1	+	9.196147443905666	2.559374458152897	GAAATAAATCA
chr10	30188614	30188615	chr10:30188615:C:T	rs11597383	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	30345614	30345615	chr10:30345615:A:G	rs6481673	A	G	.	Hoxa9_MA0594.1	8	1	-	8.774295001881132	1.901006951781243	GCAATAAATTA
chr10	30476363	30476364	chr10:30476364:G:A	rs655153	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	30490181	30490182	chr10:30490182:T:C	rs76524638	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	30494906	30494907	chr10:30494907:G:T	rs143679183	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	30537644	30537645	chr10:30537645:T:C	rs12570124	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	30541228	30541229	chr10:30541229:G:A	rs3124180	G	A	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	30561694	30561695	chr10:30561695:T:C	rs76868982	T	C	T	Hoxa9_MA0594.1	10	1	-	7.994175372278161	1.3574023865253926	CCAGTAAATCA
chr10	30748758	30748759	chr10:30748759:G:A	rs1874074	G	A	g	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	30830784	30830785	chr10:30830785:C:T	rs10826875	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	30863021	30863022	chr10:30863022:T:C	rs2934653	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	30902056	30902057	chr10:30902057:C:T	rs148501468	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr10	30997600	30997601	chr10:30997601:G:A	rs55913151	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	31124006	31124007	chr10:31124007:C:A	rs2066250	C	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	31156990	31156991	chr10:31156991:A:G	rs793107	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	31156997	31156998	chr10:31156998:T:C	rs1764444	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	31279054	31279055	chr10:31279055:C:T	rs143226907	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	31618989	31618990	chr10:31618990:G:A	rs12268132	G	A	g	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	31673642	31673643	chr10:31673643:A:G	rs796134	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	31954667	31954668	chr10:31954668:G:C	rs7903754	G	C	G	Hoxa9_MA0594.1	1	1	-	7.727146254177281	4.66837829253032	ACCCTAAATCA
chr10	32695522	32695523	chr10:32695523:G:A	rs11596495	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	32953367	32953368	chr10:32953368:G:A	rs140563523	G	A	G	Hoxa9_MA0594.1	2	1	-	7.801541603022757	5.881210519895534	GACATGAATCA
chr10	33015689	33015690	chr10:33015690:G:T	rs7923985	G	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	33067083	33067084	chr10:33067084:A:G	rs117133346	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	33195767	33195768	chr10:33195768:G:A	rs734187	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	33368395	33368396	chr10:33368396:A:G	rs75525052	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	33425885	33425886	chr10:33425886:A:G	rs10827259	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	33658560	33658561	chr10:33658561:G:T	rs7079605	G	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	33764077	33764078	chr10:33764078:C:G	rs2812605	C	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	33858366	33858367	chr10:33858367:T:C	rs10508791	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	34182154	34182155	chr10:34182155:C:T	rs537655680	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	34224901	34224902	chr10:34224902:C:T	rs2570326	C	T	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	34332302	34332303	chr10:34332303:T:C	rs7917590	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	34364397	34364398	chr10:34364398:C:T	rs539874707	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr10	34471580	34471581	chr10:34471581:G:A	rs113382914	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	34547505	34547506	chr10:34547506:G:A	rs76231738	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	34727646	34727647	chr10:34727647:T:C	rs11009892	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr10	34844687	34844688	chr10:34844688:C:A	rs11009978	C	A	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	34880804	34880805	chr10:34880805:G:A	rs7083370	G	A	A	Hoxa9_MA0594.1	5	1	-	8.638788413355046	6.218649406025359	ACCATCAATCC
chr10	35037860	35037861	chr10:35037861:G:A	rs2384283	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	35089730	35089731	chr10:35089731:A:G	rs79035143	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	35089772	35089773	chr10:35089773:C:T	rs141222936	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	35580283	35580284	chr10:35580284:G:C	rs151044368	G	C	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr10	35686674	35686675	chr10:35686675:T:A	rs73272463	T	A	T	Hoxa9_MA0594.1	7	1	-	7.854530172183207	0.9515964984802865	GACATAAATCC
chr10	35790166	35790167	chr10:35790167:A:G	rs76251298	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	36021821	36021822	chr10:36021822:G:T	rs10508824	G	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	36282000	36282001	chr10:36282001:G:C	rs74526647	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	36469976	36469977	chr10:36469977:G:A	rs4934821	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	36555318	36555319	chr10:36555319:G:A	rs193120047	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	36560497	36560498	chr10:36560498:G:T	rs1537326	G	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	36629666	36629667	chr10:36629667:G:A	rs11010742	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	36802563	36802564	chr10:36802564:A:G	rs1464576101	A	G	a	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	36818326	36818327	chr10:36818327:C:A	rs12572077	C	A	c	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	36818337	36818338	chr10:36818338:G:C	rs2695081	G	C	g	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	37536273	37536274	chr10:37536274:T:A	rs2505704	T	A	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	37619487	37619488	chr10:37619488:C:T	rs10734026	C	T	t	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	37720354	37720355	chr10:37720355:G:A	rs17660553	G	A	.	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr10	38605212	38605213	chr10:38605213:T:C	rs11146849	T	C	.	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	39576573	39576574	chr10:39576574:G:A	rs1415143283	G	A	.	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	42187877	42187878	chr10:42187878:G:A	rs191890307	G	A	.	Hoxa9_MA0594.1	1	1	-	8.53481249235293	7.643262731242535	GCCATGAATCT
chr10	42969572	42969573	chr10:42969573:G:A	rs4554841	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	42969594	42969595	chr10:42969595:A:G	rs17158328	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	42976126	42976127	chr10:42976127:C:T	rs10900290	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	43302193	43302194	chr10:43302194:G:C	rs2503868	G	C	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	43511980	43511981	chr10:43511981:G:A	rs3006398	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	43595991	43595992	chr10:43595992:G:T	rs11238592	G	T	g	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	43731651	43731652	chr10:43731652:C:T	rs79796674	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	43854131	43854132	chr10:43854132:G:A	rs78129090	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	43910378	43910379	chr10:43910379:G:A	rs75864535	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	44015964	44015965	chr10:44015965:C:T	rs4948815	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr10	44017694	44017695	chr10:44017695:G:T	rs10736825	G	T	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	44019681	44019682	chr10:44019682:C:T	rs1492704	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	44044464	44044465	chr10:44044465:T:G	rs2047009	T	G	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	44066473	44066474	chr10:44066474:G:A	rs17155040	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr10	44316519	44316520	chr10:44316520:A:C	rs67379075	A	C	C	Hoxa9_MA0594.1	3	1	+	7.541247136946303	3.613032712467062	GCCATGAATCC
chr10	44316539	44316540	chr10:44316540:C:T	rs145918626	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	44325938	44325939	chr10:44325939:C:T	rs10508884	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	44425156	44425157	chr10:44425157:G:A	rs4948626	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	44473327	44473328	chr10:44473328:G:A	rs4948893	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	44576441	44576442	chr10:44576442:C:T	rs7083920	C	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	44689478	44689479	chr10:44689479:A:G	rs17501869	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	44912562	44912563	chr10:44912563:T:C	rs7904676	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	44978832	44978833	chr10:44978833:C:T	rs2274887	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	44978844	44978845	chr10:44978845:C:A	rs74469250	C	A	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	45044912	45044913	chr10:45044913:T:C	rs10751365	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	45179704	45179705	chr10:45179705:T:G	rs11239374	T	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	45448053	45448054	chr10:45448054:C:T	rs74231484	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	45575322	45575323	chr10:45575323:C:T	rs11239565	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	45586288	45586289	chr10:45586289:T:G	rs34516867	T	G	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	45674521	45674522	chr10:45674522:C:T	rs79083998	C	T	.	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	46014678	46014679	chr10:46014679:T:C	rs17776547	T	C	T	Hoxa9_MA0594.1	7	1	-	7.656437520341079	0.753503846638159	GCCATCTATCT
chr10	46051033	46051034	chr10:46051034:G:A	rs73318166	G	A	g	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	46264189	46264190	chr10:46264190:C:A	rs111258695	C	A	.	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	46264206	46264207	chr10:46264207:A:G	rs77050056	A	G	.	Hoxa9_MA0594.1	7	1	+	7.608170449234994	0.7052367755320748	GCAATCCATCA
chr10	46319513	46319514	chr10:46319514:A:T	rs10752401	A	T	.	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	46514985	46514986	chr10:46514986:G:A	rs9733650	G	A	g	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	46526083	46526084	chr10:46526084:A:T	rs111209257	A	T	-	Hoxa9_MA0594.1	3	1	+	9.341231971375704	2.4984953287680147	CACATCAATCA
chr10	46526085	46526086	chr10:46526086:C:T	rs111200266	C	T	-	Hoxa9_MA0594.1	5	1	+	9.341231971375704	6.921092964046014	CACATCAATCA
chr10	47059064	47059065	chr10:47059065:G:C	rs1055407205	G	C	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	47175428	47175429	chr10:47175429:C:T	rs117179121	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	47181349	47181350	chr10:47181350:A:G	rs61843411	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	47205678	47205679	chr10:47205679:C:A	rs761667589	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	47260662	47260663	chr10:47260663:G:A	rs578159577	G	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	47313898	47313899	chr10:47313899:A:T	rs880313	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	47416823	47416824	chr10:47416824:G:A	rs77814453	G	A	-	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	48494620	48494621	chr10:48494621:G:A	rs1867582	G	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	48527517	48527518	chr10:48527518:C:T	rs10776612	C	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	48535217	48535218	chr10:48535218:C:T	rs1814470	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	48899908	48899909	chr10:48899909:G:C	rs60438808	G	C	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	48899915	48899916	chr10:48899916:A:T	rs10776652	A	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	48912661	48912662	chr10:48912662:T:C	rs6537583	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	49143838	49143839	chr10:49143839:T:C	rs2377982	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr10	49163967	49163968	chr10:49163968:C:T	rs73304781	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	49201053	49201054	chr10:49201054:G:A	rs12570293	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	49262284	49262285	chr10:49262285:A:G	rs12411581	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	49447132	49447133	chr10:49447133:A:G	rs7080607	A	G	A	Hoxa9_MA0594.1	3	1	+	9.894648994041017	6.912852566632158	CACATAAATCA
chr10	49562585	49562586	chr10:49562586:A:G	rs10857507	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	49663669	49663670	chr10:49663670:A:G	rs3793800	A	G	A	Hoxa9_MA0594.1	7	1	+	7.8728260628999855	0.9698923891970659	GCCATCAATTT
chr10	49830250	49830251	chr10:49830251:G:C	rs7067802	G	C	G	Hoxa9_MA0594.1	5	1	-	8.612424164967203	6.649697375835908	GTCATCAATCC
chr10	49845394	49845395	chr10:49845395:T:C	rs139298953	T	C	t	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	49884012	49884013	chr10:49884013:T:C	rs7086002	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	50367690	50367691	chr10:50367691:A:G	rs10508927	A	G	A	Hoxa9_MA0594.1	3	1	+	8.99912740272714	6.0173309753182815	TCCATCAATCA
chr10	50453105	50453106	chr10:50453106:A:G	rs1203381	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	50549942	50549943	chr10:50549943:C:T	rs3011790	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	51118190	51118191	chr10:51118191:A:G	rs7897669	A	G	a	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	51397875	51397876	chr10:51397876:C:G	rs190629823	C	G	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	51640271	51640272	chr10:51640272:A:G	rs75295207	A	G	A	Hoxa9_MA0594.1	5	1	+	9.452499902096816	6.936356090300206	AACATAAATCA
chr10	51685392	51685393	chr10:51685393:C:T	rs7913405	C	T	C	Hoxa9_MA0594.1	0	1	-	8.561166597372587	7.695981084650036	GTCATAAATAA
chr10	51686001	51686002	chr10:51686002:A:G	rs10998900	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	52030700	52030701	chr10:52030701:C:T	rs10762541	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	52133669	52133670	chr10:52133670:G:T	rs16927140	G	T	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	52574941	52574942	chr10:52574942:C:G	rs117446437	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	52618880	52618881	chr10:52618881:C:T	rs10508973	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	52618917	52618918	chr10:52618918:G:A	rs10508974	G	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	52979867	52979868	chr10:52979868:A:G	rs11003301	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	53091164	53091165	chr10:53091165:C:T	rs79301467	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	53953329	53953330	chr10:53953330:A:T	rs1900421	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	53992023	53992024	chr10:53992024:A:C	rs12761393	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	54713098	54713099	chr10:54713099:T:A	rs17592418	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	55063680	55063681	chr10:55063681:C:T	rs10740611	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	55214795	55214796	chr10:55214796:T:G	rs68123014	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	55670385	55670386	chr10:55670386:T:G	rs7922805	T	G	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	55764627	55764628	chr10:55764628:G:A	rs2140400	G	A	a	Hoxa9_MA0594.1	27	0	-	0	0	.
chr10	55960636	55960637	chr10:55960637:A:T	rs10763277	A	T	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	55989240	55989241	chr10:55989241:G:A	rs10825708	G	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	56035715	56035716	chr10:56035716:A:C	rs1587516	A	C	A	Hoxa9_MA0594.1	8	1	-	9.196147443905666	4.241251513967197	GAAATAAATCA
chr10	56035738	56035739	chr10:56035739:A:C	rs1587515	A	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	56296763	56296764	chr10:56296764:A:G	rs16908640	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	56744732	56744733	chr10:56744733:A:G	rs10219056	A	G	a	Hoxa9_MA0594.1	10	1	-	9.064232820513286	8.07066746510666	ACAATAAATCT
chr10	56909866	56909867	chr10:56909867:T:C	rs2818835	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	57135898	57135899	chr10:57135899:G:T	rs11005659	G	T	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	57260390	57260391	chr10:57260391:T:G	rs1679493	T	G	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	57322296	57322297	chr10:57322297:A:G	rs12415435	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	57476042	57476043	chr10:57476043:A:G	rs79744788	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	57645424	57645425	chr10:57645425:T:C	rs149365870	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	58028890	58028891	chr10:58028891:A:G	rs914767	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	58028913	58028914	chr10:58028914:G:C	rs60184203	G	C	C	Hoxa9_MA0594.1	0	1	-	10.084422038576625	10.507458459354975	CTAATAAATCA
chr10	58149802	58149803	chr10:58149803:C:G	rs76782997	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	58159054	58159055	chr10:58159055:C:T	chr10:58159055:C:T	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	58159071	58159072	chr10:58159072:A:G	rs11815860	A	G	A	Hoxa9_MA0594.1	3	1	+	7.864522907426146	4.882726480017287	ACCATCCATCA
chr10	58176788	58176789	chr10:58176789:A:G	rs77182117	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	58176789	58176790	chr10:58176790:C:A	rs74510501	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	58269522	58269523	chr10:58269523:G:A	rs2297887	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	58514137	58514138	chr10:58514138:G:A	rs10763551	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	58526106	58526107	chr10:58526107:A:G	rs1649022	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	58994408	58994409	chr10:58994409:C:A	rs3907187	C	A	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	59265397	59265398	chr10:59265398:G:A	rs73298134	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	59387172	59387173	chr10:59387173:A:G	rs1156719	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	59462794	59462795	chr10:59462795:T:C	rs1450771	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	59493623	59493624	chr10:59493624:C:A	rs1244461474	C	A	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	59854524	59854525	chr10:59854525:C:T	rs1709343	C	T	T	Hoxa9_MA0594.1	9	1	+	8.614832151347091	5.990118932762853	CTAATAAATCT
chr10	60041523	60041524	chr10:60041524:A:G	rs2393581	A	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	60141023	60141024	chr10:60141024:C:G	rs16914794	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	60141047	60141048	chr10:60141048:C:T	rs72820432	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	60367183	60367184	chr10:60367184:A:C	rs114525851	A	C	A	Hoxa9_MA0594.1	8	1	-	7.656437520341079	2.7015415904026105	GCCATCTATCT
chr10	60385042	60385043	chr10:60385043:T:C	rs72806131	T	C	C	Hoxa9_MA0594.1	3	1	-	6.982587615172259	4.000791187763402	GCCATCACTCA
chr10	60390372	60390373	chr10:60390373:C:T	rs190591801	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	60448893	60448894	chr10:60448894:A:G	rs116766032	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	60573906	60573907	chr10:60573907:C:T	rs151007800	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	60883307	60883308	chr10:60883308:G:A	rs193076305	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	60979063	60979064	chr10:60979064:C:T	rs78547823	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	61301410	61301411	chr10:61301411:C:T	rs3107447	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	61355356	61355357	chr10:61355357:C:T	rs78695492	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	61636281	61636282	chr10:61636282:T:A	rs10994843	T	A	T	Hoxa9_MA0594.1	10	1	+	8.082954538162921	9.552544425392455	TCCATAAATCT
chr10	61662468	61662469	chr10:61662469:A:G	rs144069768	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	61934133	61934134	chr10:61934134:C:T	rs4948490	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	61934134	61934135	chr10:61934135:C:T	chr10:61934135:C:T	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	62020471	62020472	chr10:62020472:A:G	rs61850777	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	62116810	62116811	chr10:62116811:C:G	rs114594330	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	62188609	62188610	chr10:62188610:C:T	rs34091652	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	62281448	62281449	chr10:62281449:C:T	rs7478117	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr10	62426148	62426149	chr10:62426149:T:C	rs10995154	T	C	T	Hoxa9_MA0594.1	7	1	-	8.74080400765128	1.837870333948359	ATCATCAATCT
chr10	62637724	62637725	chr10:62637725:G:C	rs77982224	G	C	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	62669546	62669547	chr10:62669547:C:T	rs7092853	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	62669558	62669559	chr10:62669559:G:A	rs11812737	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	62687560	62687561	chr10:62687561:G:A	rs140141204	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	62857179	62857180	chr10:62857180:T:C	rs224313	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	62857904	62857905	chr10:62857905:T:C	rs10995332	T	C	T	Hoxa9_MA0594.1	3	1	-	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr10	62980997	62980998	chr10:62980998:G:T	rs115085740	G	T	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	63023576	63023577	chr10:63023577:G:C	rs61864361	G	C	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr10	63055392	63055393	chr10:63055393:G:A	rs12247165	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	63200817	63200818	chr10:63200818:G:C	rs72829179	G	C	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	63256308	63256309	chr10:63256309:G:T	rs139734876	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr10	63562707	63562708	chr10:63562708:A:G	rs72837096	A	G	A	Hoxa9_MA0594.1	7	1	+	10.845591197800056	3.942657524097136	GCAATCAATCA
chr10	63799225	63799226	chr10:63799226:A:G	rs10995626	A	G	A	Hoxa9_MA0594.1	8	1	-	7.854530172183207	0.9812421220833174	GACATAAATCC
chr10	64038090	64038091	chr10:64038091:C:T	rs71508986	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	64396563	64396564	chr10:64396564:A:T	rs1462890997	A	T	A	Hoxa9_MA0594.1	8	1	-	10.185770791426988	6.716010738327537	ACCATAAATCT
chr10	64846799	64846800	chr10:64846800:A:G	rs1227265	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	65110245	65110246	chr10:65110246:A:G	rs10996217	A	G	g	Hoxa9_MA0594.1	8	1	+	9.050786138279621	7.565650261440604	GCCATAAAACA
chr10	65394561	65394562	chr10:65394562:C:T	rs1394333	C	T	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	65400444	65400445	chr10:65400445:G:A	rs6480074	G	A	G	Hoxa9_MA0594.1	5	1	+	9.139216866859913	11.655360678656521	ACCATGAATCA
chr10	65811611	65811612	chr10:65811612:A:C	rs10996679	A	C	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	65868478	65868479	chr10:65868479:C:T	rs74968435	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	66142679	66142680	chr10:66142680:A:C	rs10509249	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	66596207	66596208	chr10:66596208:G:A	rs1158119	G	A	G	Hoxa9_MA0594.1	0	1	+	10.057390948742912	9.19220543602036	GCCATAAATCC
chr10	67670675	67670676	chr10:67670676:A:T	rs73271908	A	T	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	67695460	67695461	chr10:67695461:C:A	rs192682394	C	A	C	Hoxa9_MA0594.1	2	1	+	7.605819354503911	6.484281383590209	GTCATCAAACA
chr10	68032180	68032181	chr10:68032181:G:C	rs482806	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	68300455	68300456	chr10:68300456:A:C	rs10047388	A	C	c	Hoxa9_MA0594.1	9	1	+	8.33117838756928	11.39900822046537	GCAATAAATAA
chr10	68829160	68829161	chr10:68829161:G:A	rs185389058	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	68861744	68861745	chr10:68861745:C:A	rs7078797	C	A	a	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	69216140	69216141	chr10:69216141:C:T	rs5030937	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	69216159	69216160	chr10:69216160:C:T	rs5030938	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	69279550	69279551	chr10:69279551:C:T	rs78792424	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	69282003	69282004	chr10:69282004:C:G	rs12253706	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	69282049	69282050	chr10:69282050:G:T	rs4746834	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	69410025	69410026	chr10:69410026:G:A	rs12268055	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	69410027	69410028	chr10:69410028:G:A	rs113306961	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	69427382	69427383	chr10:69427383:G:A	rs1042815489	G	A	g	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	69463951	69463952	chr10:69463952:A:G	rs12413394	A	G	g	Hoxa9_MA0594.1	3	1	+	10.057390948742912	7.075594521334054	GCCATAAATCC
chr10	69554925	69554926	chr10:69554926:C:G	rs7917647	C	G	G	Hoxa9_MA0594.1	0	1	-	7.838158659038301	7.415122238259951	GTCATCCATCA
chr10	69817219	69817220	chr10:69817220:G:A	rs181715417	G	A	G	Hoxa9_MA0594.1	10	1	-	8.189387744188851	9.182953099595478	CTCATCAATCC
chr10	69819758	69819759	chr10:69819759:G:A	rs10998986	G	A	G	Hoxa9_MA0594.1	1	1	-	7.565650261440604	6.6741005003302085	GCCATAAAGCA
chr10	69861793	69861794	chr10:69861794:C:A	rs984196945	C	A	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	70256008	70256009	chr10:70256009:G:T	rs56938544	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	70562982	70562983	chr10:70562983:T:C	rs12783122	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	70590900	70590901	chr10:70590901:A:G	rs181936003	A	G	A	Hoxa9_MA0594.1	2	1	+	8.773111023127315	3.3707490062926775	CAAATAAATCA
chr10	70618288	70618289	chr10:70618289:G:A	rs146448028	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	70927364	70927365	chr10:70927365:G:A	rs71477520	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	71032381	71032382	chr10:71032382:A:T	rs149010904	A	T	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	71039394	71039395	chr10:71039395:T:C	rs7067603	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	71044782	71044783	chr10:71044783:T:C	rs77215532	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	71082183	71082184	chr10:71082184:C:A	rs4512751	C	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	71130683	71130684	chr10:71130684:C:G	rs10823687	C	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	71324135	71324136	chr10:71324136:T:C	rs4348816	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	71476646	71476647	chr10:71476647:T:C	rs16928920	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	71577400	71577401	chr10:71577401:A:T	rs10999893	A	T	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	71585909	71585910	chr10:71585910:G:A	rs4372366	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	71588200	71588201	chr10:71588201:A:G	rs138622309	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	71634868	71634869	chr10:71634869:C:T	rs10823808	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	71669000	71669001	chr10:71669001:G:A	rs1625164	G	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	71786303	71786304	chr10:71786304:T:C	rs11000000	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	71850498	71850499	chr10:71850499:T:C	rs74234126	T	C	T	Hoxa9_MA0594.1	3	1	-	9.764268392154055	6.782471964745194	GACATCAATCA
chr10	72009784	72009785	chr10:72009785:G:A	rs4148944	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	72009831	72009832	chr10:72009832:C:T	rs4148945	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	72086206	72086207	chr10:72086207:G:A	rs117701902	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	72215442	72215443	chr10:72215443:A:T	rs41282258	A	T	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	72375534	72375535	chr10:72375535:A:C	rs148491171	A	C	A	Hoxa9_MA0594.1	3	1	+	9.00428321168444	5.076068787205198	GTCATAAATTA
chr10	72418918	72418919	chr10:72418919:C:T	rs11000293	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr10	72821838	72821839	chr10:72821839:A:T	rs2121097	A	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	73480218	73480219	chr10:73480219:C:T	rs11000671	C	T	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	73871996	73871997	chr10:73871997:T:A	rs2633312	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	73913972	73913973	chr10:73913973:C:T	rs2227566	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	74145341	74145342	chr10:74145342:C:T	rs1342240774	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	74194616	74194617	chr10:74194617:T:C	rs12569971	T	C	T	Hoxa9_MA0594.1	7	1	-	8.07066746510666	1.167733791403739	ACAATAAATCC
chr10	75015659	75015660	chr10:75015660:G:A	rs12221048	G	A	g	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	75049062	75049063	chr10:75049063:T:C	rs7904278	T	C	T	Hoxa9_MA0594.1	3	1	-	8.848095527589834	5.866299100180975	GACATAAATCT
chr10	75111189	75111190	chr10:75111190:T:C	rs142322452	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	75167037	75167038	chr10:75167038:T:A	rs34681691	T	A	T	Hoxa9_MA0594.1	10	1	-	8.41793993009146	6.948350042861927	ACCATACATCA
chr10	75262702	75262703	chr10:75262703:C:T	rs12766938	C	T	c	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	75283864	75283865	chr10:75283865:G:A	rs190129228	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	75367457	75367458	chr10:75367458:G:T	rs972581923	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	75367474	75367475	chr10:75367475:G:A	rs1259589	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	75408407	75408408	chr10:75408408:C:G	rs556973884	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	75408414	75408415	chr10:75408415:T:C	rs114061153	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	75469220	75469221	chr10:75469221:A:G	rs145745844	A	G	A	Hoxa9_MA0594.1	1	1	-	10.763810917546127	11.655360678656521	ATCATAAATCA
chr10	75708193	75708194	chr10:75708194:C:T	rs115486541	C	T	C	Hoxa9_MA0594.1	0	1	-	11.39900822046537	10.53382270774282	GCAATAAATCA
chr10	75924436	75924437	chr10:75924437:T:G	rs74463355	T	G	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	76071772	76071773	chr10:76071773:T:C	chr10:76071773:T:C	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	76191010	76191011	chr10:76191011:T:C	rs544522427	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	76297178	76297179	chr10:76297179:T:C	rs2573557	T	C	C	Hoxa9_MA0594.1	3	1	-	10.652542986825011	7.670746559416154	CTCATCAATCA
chr10	76353247	76353248	chr10:76353248:A:G	rs16933426	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	76480525	76480526	chr10:76480526:A:G	rs2637275	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	76581782	76581783	chr10:76581783:G:A	rs12098310	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	76649905	76649906	chr10:76649906:C:G	rs714553	C	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	76724665	76724666	chr10:76724666:T:C	rs7088293	T	C	t	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	77052126	77052127	chr10:77052127:A:G	rs115260706	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	77064309	77064310	chr10:77064310:T:C	rs1247763	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	77242571	77242572	chr10:77242572:G:A	rs487926	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	77418285	77418286	chr10:77418286:G:C	rs28735	G	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	77429047	77429048	chr10:77429048:T:C	rs36024854	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	77455668	77455669	chr10:77455669:T:C	rs166991	T	C	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	77493626	77493627	chr10:77493627:G:A	rs187193692	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	77613807	77613808	chr10:77613808:G:C	rs34211793	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	77633573	77633574	chr10:77633574:C:A	rs2619617	C	A	A	Hoxa9_MA0594.1	3	1	-	7.8637947703911975	4.002854555192369	GCAGTCAATCA
chr10	77633582	77633583	chr10:77633583:G:A	rs2673409	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	78334781	78334782	chr10:78334782:C:T	rs12780838	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	78384269	78384270	chr10:78384270:G:T	rs78940250	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	78448088	78448089	chr10:78448089:G:T	rs737150	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr10	78459134	78459135	chr10:78459135:C:G	chr10:78459135:C:G	C	G	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	78519020	78519021	chr10:78519021:C:G	rs117106712	C	G	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	78552277	78552278	chr10:78552278:T:C	rs10509399	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	78560225	78560226	chr10:78560226:A:G	rs16936087	A	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	78569634	78569635	chr10:78569635:T:C	rs164234	T	C	C	Hoxa9_MA0594.1	6	1	-	8.74080400765128	1.923203221895622	ATCATCAATCT
chr10	78583229	78583230	chr10:78583230:C:T	rs997272049	C	T	C	Hoxa9_MA0594.1	5	1	+	7.415122238259951	4.994983230930263	CTCATCCATCA
chr10	78777723	78777724	chr10:78777724:A:G	rs61852775	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	78785232	78785233	chr10:78785233:G:A	rs61852808	G	A	G	Hoxa9_MA0594.1	0	1	+	9.95404143668966	9.08885592396711	GTAATCAATCA
chr10	78785257	78785258	chr10:78785258:A:G	rs72812065	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	78842303	78842304	chr10:78842304:T:C	rs10740484	T	C	C	Hoxa9_MA0594.1	8	1	-	8.497369115614307	7.0122332387752895	GCCATCAAACA
chr10	78842325	78842326	chr10:78842326:A:G	rs16936487	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	78876587	78876588	chr10:78876588:T:C	rs77239032	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	78985891	78985892	chr10:78985892:G:C	rs745494	G	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	79114211	79114212	chr10:79114212:G:A	rs16936866	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	79196272	79196273	chr10:79196273:C:T	rs4980044	C	T	C	Hoxa9_MA0594.1	2	1	+	7.260118532919163	5.339787449791941	GCCATCCATCT
chr10	79378718	79378719	chr10:79378719:G:A	rs28429044	G	A	a	Hoxa9_MA0594.1	29	0	-	0	0	.
chr10	79378744	79378745	chr10:79378745:T:G	rs560773216	T	G	t	Hoxa9_MA0594.1	3	1	-	7.390499134806127	3.462284710326886	CCCATACATCT
chr10	79405980	79405981	chr10:79405981:A:G	rs10740505	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	79439328	79439329	chr10:79439329:G:C	rs2395569	G	C	G	Hoxa9_MA0594.1	5	1	+	8.45982798789041	10.422554777021706	CCAATGAATCA
chr10	79489036	79489037	chr10:79489037:C:T	rs75121429	C	T	.	Hoxa9_MA0594.1	5	1	+	7.440758349612847	5.020619342283159	CCAGTCAATCA
chr10	79562242	79562243	chr10:79562243:C:G	rs147392067	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	79614700	79614701	chr10:79614701:T:C	rs4253536	T	C	t	Hoxa9_MA0594.1	27	0	-	0	0	.
chr10	80001644	80001645	chr10:80001645:G:T	rs10887328	G	T	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	80016726	80016727	chr10:80016727:T:C	rs77026996	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	80058697	80058698	chr10:80058698:G:T	rs7894943	G	T	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	80203940	80203941	chr10:80203941:A:T	rs75831912	A	T	a	Hoxa9_MA0594.1	1	1	-	8.561166597372587	7.249855581923276	GTCATAAATAA
chr10	80450387	80450388	chr10:80450388:A:C	rs10887896	A	C	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	80491292	80491293	chr10:80491293:A:T	rs7093808	A	T	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	80598597	80598598	chr10:80598598:G:A	rs11186224	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	80896526	80896527	chr10:80896527:C:T	rs1002745	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	81269269	81269270	chr10:81269270:T:C	rs10786322	T	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	81307511	81307512	chr10:81307512:T:C	rs11189308	T	C	T	Hoxa9_MA0594.1	4	1	+	9.196147443905666	2.2873926645904445	GAAATAAATCA
chr10	81315017	81315018	chr10:81315018:A:G	rs1021991	A	G	A	Hoxa9_MA0594.1	4	1	-	12.097509770600722	5.188754991285502	CCCATAAATCA
chr10	81335012	81335013	chr10:81335013:A:G	rs265531	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	81339484	81339485	chr10:81339485:C:A	rs265518	C	A	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	81422377	81422378	chr10:81422378:T:C	rs11189822	T	C	T	Hoxa9_MA0594.1	3	1	-	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr10	81503685	81503686	chr10:81503686:T:C	rs4478934	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	81633430	81633431	chr10:81633431:G:A	rs17710692	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	82917502	82917503	chr10:82917503:C:T	rs11196467	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	83015065	83015066	chr10:83015066:C:T	rs11196892	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr10	83469628	83469629	chr10:83469629:C:T	rs10787946	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr10	83608493	83608494	chr10:83608494:G:A	rs10886741	G	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	83664136	83664137	chr10:83664137:G:A	rs1029133	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	83802332	83802333	chr10:83802333:G:T	chr10:83802333:G:T	G	T	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	83872061	83872062	chr10:83872062:A:C	rs10788288	A	C	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	84179588	84179589	chr10:84179589:G:A	rs528340915	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	84185098	84185099	chr10:84185099:T:A	rs13697	T	A	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	84198461	84198462	chr10:84198462:C:T	rs17103203	C	T	C	Hoxa9_MA0594.1	9	1	+	11.050956304149539	8.4262430855653	GCCATAAATCT
chr10	84213508	84213509	chr10:84213509:G:A	rs4244946	G	A	g	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	84234623	84234624	chr10:84234624:G:A	rs6585848	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	84567220	84567221	chr10:84567221:C:T	rs10887320	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	85195121	85195122	chr10:85195122:A:G	rs17370747	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	85429235	85429236	chr10:85429236:T:C	rs10887477	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	85594924	85594925	chr10:85594925:G:T	rs78426998	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	85601032	85601033	chr10:85601033:T:C	rs41313469	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	86103860	86103861	chr10:86103861:A:G	rs138722565	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	86315774	86315775	chr10:86315775:T:A	rs4934179	T	A	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	86392705	86392706	chr10:86392706:C:T	rs73346366	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr10	86600458	86600459	chr10:86600459:T:G	rs2691054	T	G	g	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	86600474	86600475	chr10:86600475:C:T	rs56211920	C	T	c	Hoxa9_MA0594.1	2	1	+	7.541247136946303	5.62091605381908	GCCATGAATCC
chr10	86798887	86798888	chr10:86798888:A:G	rs189702869	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	86802928	86802929	chr10:86802929:G:A	rs10887656	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	86947293	86947294	chr10:86947294:C:T	rs4281405	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	86955164	86955165	chr10:86955165:A:G	rs74150412	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	87096374	87096375	chr10:87096375:A:G	rs549856803	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	87341246	87341247	chr10:87341247:T:G	rs113381752	T	G	T	Hoxa9_MA0594.1	5	1	-	8.843479834418904	8.29006281175359	ATTATAAATCA
chr10	87401566	87401567	chr10:87401567:T:C	rs117548383	T	C	T	Hoxa9_MA0594.1	8	1	+	10.422554777021706	3.5492667269218163	CCAATCAATCA
chr10	87547834	87547835	chr10:87547835:A:G	rs7919087	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	87936046	87936047	chr10:87936047:A:G	rs920133128	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	88029131	88029132	chr10:88029132:G:C	rs2785080	G	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	88139389	88139390	chr10:88139390:G:A	rs149395765	G	A	G	Hoxa9_MA0594.1	2	1	-	7.122741879670299	5.2024107965430755	GCCCTAAATCT
chr10	88145099	88145100	chr10:88145100:G:A	rs7358173	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	88210773	88210774	chr10:88210774:C:A	rs12266972	C	A	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	88471960	88471961	chr10:88471961:T:C	rs1183901	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	88490236	88490237	chr10:88490237:G:C	rs2576175	G	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	88642627	88642628	chr10:88642628:A:G	rs10749594	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	88913289	88913290	chr10:88913290:G:A	rs34270879	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	88913307	88913308	chr10:88913308:G:A	rs9988723	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	89032160	89032161	chr10:89032161:G:T	rs117466980	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	89205933	89205934	chr10:89205934:T:C	rs3802658	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	89205950	89205951	chr10:89205951:G:T	rs3802657	G	T	T	Hoxa9_MA0594.1	1	1	-	9.139216866859913	6.936356090300206	ACCATGAATCA
chr10	89217212	89217213	chr10:89217213:T:G	chr10:89217213:T:G	T	G	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	89346724	89346725	chr10:89346725:C:T	rs73367441	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	89452837	89452838	chr10:89452838:C:A	rs2026912	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	89522540	89522541	chr10:89522541:T:C	rs11185738	T	C	T	Hoxa9_MA0594.1	3	1	-	8.077400274154538	5.095603846745679	GCCATTAATCT
chr10	89606953	89606954	chr10:89606954:T:C	rs11185784	T	C	t	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	89785248	89785249	chr10:89785249:C:T	rs12773740	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	89939912	89939913	chr10:89939913:T:C	rs117907863	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	89939944	89939945	chr10:89939945:G:C	rs1274137	G	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	90407747	90407748	chr10:90407748:T:C	rs1341827	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr10	90642172	90642173	chr10:90642173:C:T	rs2420187	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	91528008	91528009	chr10:91528009:G:A	rs117520222	G	A	g	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	91528025	91528026	chr10:91528026:A:G	rs79622742	A	G	a	Hoxa9_MA0594.1	7	1	+	8.043175694344246	1.1402420206413262	AGCATCAATCA
chr10	91588553	91588554	chr10:91588554:C:T	rs139946210	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	91604287	91604288	chr10:91604288:C:T	rs137902726	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	92080821	92080822	chr10:92080822:G:A	rs747652230	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	92419270	92419271	chr10:92419271:C:T	rs2209972	C	T	c	Hoxa9_MA0594.1	0	1	-	6.819970200177851	5.9547846874553	GCCATACATCC
chr10	92593847	92593848	chr10:92593848:T:C	rs138093491	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	92601861	92601862	chr10:92601862:C:T	rs75659988	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	93092821	93092822	chr10:93092822:C:T	rs17108174	C	T	C	Hoxa9_MA0594.1	9	1	+	6.982587615172259	4.35787439658802	GCCATCACTCA
chr10	93320164	93320165	chr10:93320165:T:C	rs78775273	T	C	T	Hoxa9_MA0594.1	3	1	-	9.552544425392455	6.570747997983595	TCCATAAATCA
chr10	93408876	93408877	chr10:93408877:A:G	rs2296142	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	93437568	93437569	chr10:93437569:C:T	rs765521758	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	93548911	93548912	chr10:93548912:G:A	rs77653245	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr10	93760273	93760274	chr10:93760274:A:G	rs1555869	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	94194469	94194470	chr10:94194470:A:G	rs144362794	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	94206600	94206601	chr10:94206601:C:T	rs7908334	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	94211708	94211709	chr10:94211709:T:G	rs12769135	T	G	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	94546924	94546925	chr10:94546925:G:T	rs78207147	G	T	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	95249899	95249900	chr10:95249900:G:A	rs10882573	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	95445508	95445509	chr10:95445509:T:C	chr10:95445509:T:C	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	95467181	95467182	chr10:95467182:T:C	rs7910365	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	95467198	95467199	chr10:95467199:G:A	rs12784174	G	A	G	Hoxa9_MA0594.1	0	1	-	8.581246790906087	6.03628144569782	CTCATAAATTA
chr10	95831539	95831540	chr10:95831540:T:C	rs1891536	T	C	T	Hoxa9_MA0594.1	7	1	-	9.15524832447614	2.252314650773221	GTTATCAATCA
chr10	96233708	96233709	chr10:96233709:C:A	rs17111485	C	A	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	96671637	96671638	chr10:96671638:A:G	rs78340939	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	97014344	97014345	chr10:97014345:T:C	rs12254525	T	C	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr10	97105528	97105529	chr10:97105529:A:G	rs2817692	A	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	97278775	97278776	chr10:97278776:T:C	chr10:97278776:T:C	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	97278804	97278805	chr10:97278805:G:A	rs701821	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	97278806	97278807	chr10:97278807:C:A	rs565564465	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	97514678	97514679	chr10:97514679:C:T	rs11596272	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr10	97515511	97515512	chr10:97515512:A:G	rs113973007	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	97733509	97733510	chr10:97733510:A:G	rs72835970	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	97765435	97765436	chr10:97765436:C:T	rs79492186	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr10	98212365	98212366	chr10:98212366:T:G	rs10883053	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	98325151	98325152	chr10:98325152:G:T	rs11598221	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	98458963	98458964	chr10:98458964:C:G	rs1060446	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr10	98458974	98458975	chr10:98458975:A:G	rs3179357	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	98459008	98459009	chr10:98459009:C:T	rs1060445	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	98473855	98473856	chr10:98473856:C:T	rs72838931	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	98519233	98519234	chr10:98519234:A:G	rs4919232	A	G	G	Hoxa9_MA0594.1	6	1	-	8.134870038543875	7.738551051121958	CCAATATATCA
chr10	98672559	98672560	chr10:98672560:T:C	rs78902012	T	C	T	Hoxa9_MA0594.1	4	1	+	8.4262430855653	1.5174883062500801	GCCATAAATTT
chr10	98916432	98916433	chr10:98916433:T:C	rs12412209	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	99024976	99024977	chr10:99024977:A:C	rs72838806	A	C	A	Hoxa9_MA0594.1	2	1	+	8.33117838756928	9.45271635848298	GCAATAAATAA
chr10	99371097	99371098	chr10:99371098:A:G	rs2002059	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	99619165	99619166	chr10:99619166:T:C	rs7908026	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	99676755	99676756	chr10:99676756:T:C	rs77987946	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	99938737	99938738	chr10:99938738:G:A	rs6584334	G	A	.	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	99938751	99938752	chr10:99938752:G:C	rs115967577	G	C	.	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	99938761	99938762	chr10:99938762:T:A	rs75835964	T	A	.	Hoxa9_MA0594.1	8	1	+	9.037868572125442	5.568108519025989	GTAATAAATCT
chr10	100035603	100035604	chr10:100035604:T:A	rs10883437	T	A	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr10	100053851	100053852	chr10:100053852:A:G	rs77358866	A	G	A	Hoxa9_MA0594.1	3	1	+	9.632353768761673	6.650557341352815	ACCATCAATCT
chr10	100290756	100290757	chr10:100290757:A:G	rs2242052	A	G	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	100333924	100333925	chr10:100333925:T:G	rs12262538	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	100647415	100647416	chr10:100647416:C:T	rs7068072	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	100798736	100798737	chr10:100798737:T:C	rs10748799	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	100798748	100798749	chr10:100798749:T:G	rs12570050	T	G	T	Hoxa9_MA0594.1	4	1	+	7.185134028456644	0.27637924914142475	CCAATCCATCA
chr10	100881954	100881955	chr10:100881955:A:G	rs72846660	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	100897139	100897140	chr10:100897140:T:C	rs10509746	T	C	C	Hoxa9_MA0594.1	10	1	-	10.084422038576625	3.4476490528238557	CTAATAAATCA
chr10	101292427	101292428	chr10:101292428:C:A	rs186216200	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	101356321	101356322	chr10:101356322:C:T	rs11190957	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	101467289	101467290	chr10:101467290:A:G	rs7922509	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	101559415	101559416	chr10:101559416:T:C	rs140957486	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	101838552	101838553	chr10:101838553:C:G	rs144853920	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	102291727	102291728	chr10:102291728:C:T	rs76157765	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	102555909	102555910	chr10:102555910:G:A	rs10786679	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr10	102997995	102997996	chr10:102997996:T:C	rs35791366	T	C	T	Hoxa9_MA0594.1	7	1	-	7.983126471253447	1.0801927975505277	GCCATAAATAT
chr10	103403774	103403775	chr10:103403775:C:T	rs17735615	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	103733088	103733089	chr10:103733089:C:T	rs34178838	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	103733386	103733387	chr10:103733387:C:T	rs117140591	C	T	C	Hoxa9_MA0594.1	1	1	+	8.13705986561569	7.2455101045052945	GCTATAAATCC
chr10	103756762	103756763	chr10:103756763:C:T	rs11191794	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	103844829	103844830	chr10:103844830:C:T	rs145937576	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	103936624	103936625	chr10:103936625:T:C	rs7071685	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	104123636	104123637	chr10:104123637:A:C	rs1338777	A	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	104123665	104123666	chr10:104123666:A:G	rs141044712	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	104216693	104216694	chr10:104216694:T:C	rs601019	T	C	C	Hoxa9_MA0594.1	3	1	-	8.08407129645524	5.102274869046382	GCTATGAATCA
chr10	104356847	104356848	chr10:104356848:T:A	rs17754804	T	A	t	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	104417629	104417630	chr10:104417630:T:C	rs17755809	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	104681149	104681150	chr10:104681150:C:G	rs17184053	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	104961851	104961852	chr10:104961852:G:A	rs7909012	G	A	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	105063203	105063204	chr10:105063204:A:G	rs73342230	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	105243772	105243773	chr10:105243773:G:A	rs12569994	G	A	a	Hoxa9_MA0594.1	0	1	+	8.159236377169226	7.294050864446675	GTCATAAAACA
chr10	105288105	105288106	chr10:105288106:G:A	rs139043347	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	106219276	106219277	chr10:106219277:T:C	rs2025733	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	106224578	106224579	chr10:106224579:C:T	rs73355615	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr10	106516638	106516639	chr10:106516639:C:A	rs11599633	C	A	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr10	106615091	106615092	chr10:106615092:G:A	rs7095267	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	106732127	106732128	chr10:106732128:A:G	rs3850682	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	106894639	106894640	chr10:106894640:C:A	rs80204615	C	A	C	Hoxa9_MA0594.1	9	1	+	10.497539281484224	7.429709448588133	GCCATCAATCT
chr10	107039998	107039999	chr10:107039999:G:A	rs11193183	G	A	G	Hoxa9_MA0594.1	0	1	+	10.004402379582464	9.139216866859913	GCCATGAATCA
chr10	107103201	107103202	chr10:107103202:G:A	rs10787010	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	107340244	107340245	chr10:107340245:C:T	rs12782752	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	107363761	107363762	chr10:107363762:A:C	rs111673536	A	C	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	107685766	107685767	chr10:107685767:C:T	rs2246222	C	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr10	107749371	107749372	chr10:107749372:T:G	rs12774964	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	107919964	107919965	chr10:107919965:A:G	rs78752366	A	G	A	Hoxa9_MA0594.1	7	1	+	7.517250442441346	0.6143167687384254	ACAATCAATCC
chr10	107970638	107970639	chr10:107970639:C:T	rs10884579	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr10	108244924	108244925	chr10:108244925:G:A	rs72820184	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	108361488	108361489	chr10:108361489:C:T	rs10884631	C	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr10	108448492	108448493	chr10:108448493:C:T	rs1329504	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	108792312	108792313	chr10:108792313:C:A	rs3904798	C	A	C	Hoxa9_MA0594.1	5	1	+	8.220877979215818	8.774295001881132	GCAATCAATTA
chr10	109237811	109237812	chr10:109237812:T:C	rs17126045	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	109450984	109450985	chr10:109450985:G:T	rs80343163	G	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	109721784	109721785	chr10:109721785:A:C	rs2051107	A	C	C	Hoxa9_MA0594.1	1	1	+	8.773111023127315	10.97597179968702	CAAATAAATCA
chr10	109770795	109770796	chr10:109770796:T:C	rs1268466	T	C	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	109994874	109994875	chr10:109994875:T:C	rs17126931	T	C	T	Hoxa9_MA0594.1	5	1	-	9.894648994041017	7.378505182244407	CACATAAATCA
chr10	110161550	110161551	chr10:110161551:G:A	rs113568791	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr10	110161567	110161568	chr10:110161568:A:G	rs74154991	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	110375332	110375333	chr10:110375333:T:C	rs17750794	T	C	T	Hoxa9_MA0594.1	3	1	-	7.58145301587856	4.599656588469701	CCAATCTATCA
chr10	110398770	110398771	chr10:110398771:C:T	rs561374102	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	110398771	110398772	chr10:110398772:G:A	rs113376210	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	110463176	110463177	chr10:110463177:G:A	rs558575668	G	A	G	Hoxa9_MA0594.1	1	1	-	6.982587615172259	6.091037854061864	GCCATCACTCA
chr10	110647001	110647002	chr10:110647002:T:A	rs4244280	T	A	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	111317252	111317253	chr10:111317253:A:G	rs7912815	A	G	A	Hoxa9_MA0594.1	7	1	+	9.764268392154055	2.861334718451134	GACATCAATCA
chr10	111317265	111317266	chr10:111317266:C:T	rs7912918	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	111392536	111392537	chr10:111392537:G:A	rs10885155	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	111435095	111435096	chr10:111435096:A:G	rs4590798	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr10	111756391	111756392	chr10:111756392:G:A	rs12413721	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	111926586	111926587	chr10:111926587:C:T	rs2080647	C	T	T	Hoxa9_MA0594.1	0	1	-	8.08407129645524	7.21888578373269	GCTATGAATCA
chr10	111935487	111935488	chr10:111935488:T:C	rs1421057	T	C	C	Hoxa9_MA0594.1	3	1	-	7.415122238259951	4.433325810851092	CTCATCCATCA
chr10	112362033	112362034	chr10:112362034:A:C	rs11195929	A	C	C	Hoxa9_MA0594.1	5	1	+	7.813535555584478	7.260118532919163	GCCATACATCT
chr10	112382657	112382658	chr10:112382658:A:G	rs1028702878	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	112498963	112498964	chr10:112498964:G:A	rs10885356	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	112789436	112789437	chr10:112789437:G:A	rs4918773	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	112842984	112842985	chr10:112842985:G:A	rs10885388	G	A	G	Hoxa9_MA0594.1	2	1	-	9.115713343191864	7.195382260064641	CCCGTAAATCA
chr10	112939290	112939291	chr10:112939291:C:T	rs11196161	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	113028351	113028352	chr10:113028352:G:A	rs564503600	G	A	G	Hoxa9_MA0594.1	3	1	+	7.64612345596233	10.627919883371188	CCCGTAAATCT
chr10	113340546	113340547	chr10:113340547:A:G	rs10885432	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	113382500	113382501	chr10:113382501:G:C	rs7089082	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	113382522	113382523	chr10:113382523:C:T	rs139385895	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	113403779	113403780	chr10:113403780:A:G	rs1566862	A	G	A	Hoxa9_MA0594.1	4	1	-	8.002415769692018	1.0936609903767978	CCAATTAATCA
chr10	114389487	114389488	chr10:114389488:T:C	rs758575871	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	114462989	114462990	chr10:114462990:G:A	rs7920878	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	114502358	114502359	chr10:114502359:T:C	rs80180774	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr10	114548222	114548223	chr10:114548223:C:A	rs2497718	C	A	C	Hoxa9_MA0594.1	2	1	+	7.64612345596233	6.524585485048628	CCCGTAAATCT
chr10	114683860	114683861	chr10:114683861:A:G	rs763000182	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	114749045	114749046	chr10:114749046:T:G	rs11196898	T	G	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	114749124	114749125	chr10:114749125:G:A	rs79145028	G	A	G	Hoxa9_MA0594.1	9	1	-	11.655360678656521	9.030647460072283	ACCATAAATCA
chr10	114867400	114867401	chr10:114867401:T:G	rs7094072	T	G	T	Hoxa9_MA0594.1	3	1	-	10.763810917546127	6.835596493066886	ATCATAAATCA
chr10	115772787	115772788	chr10:115772788:G:A	chr10:115772788:G:A	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	115942574	115942575	chr10:115942575:A:G	rs56045626	A	G	a	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	116237289	116237290	chr10:116237290:C:G	rs2420252	C	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	116683399	116683400	chr10:116683400:C:G	rs3010460	C	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	116776980	116776981	chr10:116776981:C:T	rs1900501	C	T	C	Hoxa9_MA0594.1	3	1	-	8.417211793056513	11.39900822046537	GCAGTAAATCA
chr10	116948373	116948374	chr10:116948374:C:T	rs114349382	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	117214004	117214005	chr10:117214005:C:T	rs11197928	C	T	c	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	117262225	117262226	chr10:117262226:C:T	rs2015586	C	T	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr10	117364192	117364193	chr10:117364193:T:C	rs1297142941	T	C	-	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	117457559	117457560	chr10:117457560:G:A	rs1224283945	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	117512426	117512427	chr10:117512427:T:C	rs403379	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	117512431	117512432	chr10:117512432:C:T	rs428723	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	117583179	117583180	chr10:117583180:T:C	rs6585442	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	117668429	117668430	chr10:117668430:G:A	rs7894825	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	118047740	118047741	chr10:118047741:A:G	rs80342815	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	118222240	118222241	chr10:118222241:A:G	rs1764192	A	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	118358570	118358571	chr10:118358571:C:T	rs7474697	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	118424095	118424096	chr10:118424096:C:T	rs116676203	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr10	118434140	118434141	chr10:118434141:G:T	rs12240742	G	T	-	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	118450655	118450656	chr10:118450656:G:A	rs7088823	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr10	118893444	118893445	chr10:118893445:C:T	rs7092342	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr10	118909739	118909740	chr10:118909740:C:G	rs7910479	C	G	G	Hoxa9_MA0594.1	6	1	+	6.766981631017401	3.1868015938268064	GCCATGCATCA
chr10	119147605	119147606	chr10:119147606:G:A	rs12416178	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	119305566	119305567	chr10:119305567:T:C	rs2420614	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	119319310	119319311	chr10:119319311:C:T	rs574387785	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr10	119319332	119319333	chr10:119319333:G:A	rs4237511	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	119392121	119392122	chr10:119392122:A:G	rs60110499	A	G	A	Hoxa9_MA0594.1	4	1	-	8.74080400765128	1.8320492283360588	ATCATCAATCT
chr10	119530850	119530851	chr10:119530851:C:T	rs72840717	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	119668364	119668365	chr10:119668365:C:T	rs4752340	C	T	C	Hoxa9_MA0594.1	0	1	-	7.7868232361530945	6.9216377234305435	GGAATCAATCA
chr10	120049104	120049105	chr10:120049105:G:T	rs12246811	G	T	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr10	120116208	120116209	chr10:120116209:C:T	rs7894011	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	120430329	120430330	chr10:120430330:T:G	rs1326656	T	G	G	Hoxa9_MA0594.1	3	1	-	9.285628926363104	5.357414501883863	CTTATAAATCA
chr10	120500079	120500080	chr10:120500080:A:G	rs12784524	A	G	G	Hoxa9_MA0594.1	6	1	+	8.294678504924521	1.4770777191688629	GACATCAATCT
chr10	120557410	120557411	chr10:120557411:A:G	rs758215060	A	G	A	Hoxa9_MA0594.1	7	1	+	8.642730421240351	1.7397967475374307	GAAATCAATCA
chr10	120578391	120578392	chr10:120578392:T:C	rs12764385	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	121172489	121172490	chr10:121172490:T:C	rs754227	T	C	C	Hoxa9_MA0594.1	3	1	-	9.632353768761673	6.650557341352815	ACCATCAATCT
chr10	121188235	121188236	chr10:121188236:C:T	rs145743977	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	121245288	121245289	chr10:121245289:A:G	rs2201024	A	G	a	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	121280366	121280367	chr10:121280367:T:C	rs11199877	T	C	T	Hoxa9_MA0594.1	3	1	-	8.843479834418904	5.8616834070100445	ATTATAAATCA
chr10	121555400	121555401	chr10:121555401:C:A	rs75301464	C	A	c	Hoxa9_MA0594.1	9	1	+	7.877589431813438	4.8097595989173465	TCAATCAATCA
chr10	121956342	121956343	chr10:121956343:G:A	rs72839617	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr10	121956354	121956355	chr10:121956355:A:G	rs7095093	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr10	122113740	122113741	chr10:122113741:A:C	rs531267249	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	122116698	122116699	chr10:122116699:A:G	rs10887077	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr10	122206909	122206910	chr10:122206910:G:A	rs76329007	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr10	122222383	122222384	chr10:122222384:C:T	rs10887106	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	122222456	122222457	chr10:122222457:G:A	rs7072025	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	122456048	122456049	chr10:122456049:T:C	rs3750846	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	122456077	122456078	chr10:122456078:C:T	rs2736912	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr10	122544629	122544630	chr10:122544630:G:T	rs61652400	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr10	122544646	122544647	chr10:122544647:T:C	rs3013219	T	C	C	Hoxa9_MA0594.1	7	1	-	7.615878323456167	0.7129446497532475	CCCCTCAATCA
chr10	122560599	122560600	chr10:122560600:A:G	rs74629622	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr10	122560677	122560678	chr10:122560678:T:C	rs2981745	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	122569700	122569701	chr10:122569701:G:A	rs2981786	G	A	g	Hoxa9_MA0594.1	23	0	-	0	0	.
chr10	122647030	122647031	chr10:122647031:A:C	rs7091947	A	C	A	Hoxa9_MA0594.1	6	1	+	9.341231971375704	6.103811222810641	CACATCAATCA
chr10	123230481	123230482	chr10:123230482:C:G	rs149072017	C	G	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	123288094	123288095	chr10:123288095:T:C	rs182259489	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	123423104	123423105	chr10:123423105:G:A	chr10:123423105:G:A	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	123452128	123452129	chr10:123452129:G:C	rs9328846	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	123500263	123500264	chr10:123500264:A:G	rs10902937	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr10	123722346	123722347	chr10:123722347:C:T	rs4980206	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	123925206	123925207	chr10:123925207:T:C	rs9794067	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	124005843	124005844	chr10:124005844:T:G	rs76209320	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	124039838	124039839	chr10:124039839:T:G	rs75514905	T	G	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	124107554	124107555	chr10:124107555:G:C	rs4630233	G	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	124258132	124258133	chr10:124258133:T:C	rs10794143	T	C	C	Hoxa9_MA0594.1	3	1	-	8.074332694835956	5.092536267427097	CCCATCAAACA
chr10	124258133	124258134	chr10:124258134:G:C	rs10901742	G	C	G	Hoxa9_MA0594.1	2	1	-	8.074332694835956	1.5504327070876163	CCCATCAAACA
chr10	124271072	124271073	chr10:124271073:G:A	rs10794172	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr10	124516967	124516968	chr10:124516968:T:C	rs11245253	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr10	124581371	124581372	chr10:124581372:A:C	rs4962389	A	C	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	124581380	124581381	chr10:124581381:G:A	rs4962663	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr10	124589020	124589021	chr10:124589021:G:T	rs12357619	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	124590078	124590079	chr10:124590079:T:C	rs10430737	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	125032691	125032692	chr10:125032692:T:C	rs35060373	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	125052227	125052228	chr10:125052228:T:G	rs2938010	T	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr10	125156488	125156489	chr10:125156489:A:C	rs113640141	A	C	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	125194912	125194913	chr10:125194913:C:T	rs56091729	C	T	C	Hoxa9_MA0594.1	0	1	+	9.123953740605721	6.5789883953974515	CCCATTAATCA
chr10	125554142	125554143	chr10:125554143:G:A	rs146979264	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr10	125554144	125554145	chr10:125554145:C:G	rs11244550	C	G	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr10	125881411	125881412	chr10:125881412:C:T	rs73381281	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	126062614	126062615	chr10:126062615:A:G	rs1278275	A	G	A	Hoxa9_MA0594.1	7	1	+	9.139216866859913	2.2362831931569924	ACCATGAATCA
chr10	126084349	126084350	chr10:126084350:C:T	rs11813475	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr10	126091341	126091342	chr10:126091342:C:T	rs112539187	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	126091362	126091363	chr10:126091363:T:C	rs3781030	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	126211081	126211082	chr10:126211082:G:A	rs74158387	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr10	126253435	126253436	chr10:126253436:G:C	rs2279753	G	C	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	126388991	126388992	chr10:126388992:A:G	rs72830729	A	G	A	Hoxa9_MA0594.1	4	1	-	7.58145301587856	0.6726982365633396	CCAATCTATCA
chr10	126798591	126798592	chr10:126798592:C:T	rs7090822	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	126958966	126958967	chr10:126958967:C:T	rs1022676072	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr10	127033319	127033320	chr10:127033320:C:T	rs61873979	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr10	127149026	127149027	chr10:127149027:T:C	rs181493344	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	127221308	127221309	chr10:127221309:A:T	rs12146152	A	T	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr10	127247358	127247359	chr10:127247359:G:A	rs12766027	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr10	127319456	127319457	chr10:127319457:C:T	rs10829749	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr10	127376296	127376297	chr10:127376297:G:A	rs4751303	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr10	127880409	127880410	chr10:127880410:T:C	rs6482992	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	127977095	127977096	chr10:127977096:C:T	rs7475525	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr10	127977106	127977107	chr10:127977107:T:C	rs12254339	T	C	T	Hoxa9_MA0594.1	7	1	-	7.173729231511967	0.27079555780904707	ACCCTCAATCA
chr10	128026971	128026972	chr10:128026972:A:G	rs542636592	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	128095769	128095770	chr10:128095770:G:A	rs10732438	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	128179212	128179213	chr10:128179213:G:A	rs10764760	G	A	g	Hoxa9_MA0594.1	0	1	+	8.391575681703616	7.526390168981065	GTCATACATCA
chr10	128387270	128387271	chr10:128387271:A:G	rs11016216	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr10	128392218	128392219	chr10:128392219:G:T	rs7901381	G	T	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr10	128396079	128396080	chr10:128396080:G:A	rs1339516	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	128526898	128526899	chr10:128526899:G:A	chr10:128526899:G:A	G	A	G	Hoxa9_MA0594.1	5	1	+	7.118210716167953	9.634354527964561	CCCATGAATCC
chr10	128678580	128678581	chr10:128678581:T:C	rs982836	T	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	128809096	128809097	chr10:128809097:G:A	rs4751007	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr10	128882597	128882598	chr10:128882598:C:T	rs79348487	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr10	129079293	129079294	chr10:129079294:G:A	rs73384572	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr10	129108567	129108568	chr10:129108568:T:C	rs61859259	T	C	T	Hoxa9_MA0594.1	7	1	-	7.529537515497607	0.6266038417946866	TCCATCAATCT
chr10	129116575	129116576	chr10:129116576:C:T	rs10741180	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	129165235	129165236	chr10:129165236:A:G	rs2209592	A	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr10	129372269	129372270	chr10:129372270:C:T	rs77530674	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	129372274	129372275	chr10:129372275:C:T	rs79317721	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr10	129519679	129519680	chr10:129519680:T:C	rs3802689	T	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	129759668	129759669	chr10:129759669:G:A	rs3793905	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	129760948	129760949	chr10:129760949:G:T	rs3793906	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	129773707	129773708	chr10:129773708:C:T	rs10829629	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr10	129892026	129892027	chr10:129892027:G:A	rs145007430	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	129951618	129951619	chr10:129951619:C:G	rs493238	C	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr10	130182750	130182751	chr10:130182751:C:G	rs872	C	G	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr10	130225137	130225138	chr10:130225138:T:G	rs10829717	T	G	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr10	130252511	130252512	chr10:130252512:C:T	rs7085097	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	130364499	130364500	chr10:130364500:G:C	rs55871010	G	C	C	Hoxa9_MA0594.1	5	1	-	7.8728260628999855	5.910099273768691	GCCATCAATTT
chr10	130403789	130403790	chr10:130403790:C:T	rs10430606	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr10	130452401	130452402	chr10:130452402:T:G	rs307385	T	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	130472779	130472780	chr10:130472780:T:C	rs407231	T	C	t	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	130565904	130565905	chr10:130565905:G:C	rs12782432	G	C	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	130627565	130627566	chr10:130627566:G:A	rs80149969	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr10	130647863	130647864	chr10:130647864:T:C	rs1176439	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr10	130694282	130694283	chr10:130694283:A:G	rs2921909	A	G	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr10	130707957	130707958	chr10:130707958:G:A	rs11597202	G	A	G	Hoxa9_MA0594.1	1	1	-	7.0122332387752895	6.120683477664895	GCCATCAAGCA
chr10	130862623	130862624	chr10:130862624:C:A	rs34949280	C	A	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr10	130864958	130864959	chr10:130864959:C:T	rs11017530	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	130887452	130887453	chr10:130887453:C:T	rs72843108	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr10	131186056	131186057	chr10:131186057:T:C	rs2918100	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	131186062	131186063	chr10:131186063:G:T	rs2918101	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	131253189	131253190	chr10:131253190:C:T	rs2918088	C	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr10	131389570	131389571	chr10:131389571:C:T	rs4750866	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr10	131631328	131631329	chr10:131631329:G:A	rs77885530	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr10	131687515	131687516	chr10:131687516:G:C	rs117309500	G	C	G	Hoxa9_MA0594.1	1	1	-	9.552544425392455	6.493776463745492	TCCATAAATCA
chr10	131694208	131694209	chr10:131694209:C:T	rs57258555	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr10	131732887	131732888	chr10:131732888:A:G	rs9419590	A	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr10	131765775	131765776	chr10:131765776:C:A	rs9419659	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	131840135	131840136	chr10:131840136:A:G	rs11818079	A	G	A	Hoxa9_MA0594.1	7	1	+	8.99912740272714	2.0961937290242205	TCCATCAATCA
chr10	131856770	131856771	chr10:131856771:G:T	rs983555073	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr10	131911074	131911075	chr10:131911075:G:C	rs1051095856	G	C	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr10	131911115	131911116	chr10:131911116:A:G	rs36138182	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr10	132001232	132001233	chr10:132001233:C:G	rs11146518	C	G	G	Hoxa9_MA0594.1	1	1	+	9.064232820513286	6.005464858866325	ACAATAAATCT
chr10	132016670	132016671	chr10:132016671:C:A	rs147324567	C	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr10	132076973	132076974	chr10:132076974:A:G	rs6560675	A	G	A	Hoxa9_MA0594.1	4	1	-	8.038914744234518	1.1301599649192977	GCCCTCAATCA
chr10	132106668	132106669	chr10:132106669:C:T	rs2379229	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr10	132112603	132112604	chr10:132112604:C:T	rs7923067	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr10	132119875	132119876	chr10:132119876:T:C	rs10870261	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr10	132335833	132335834	chr10:132335834:C:A	chr10:132335834:C:A	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr10	132511294	132511295	chr10:132511295:C:T	rs58260616	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	132618656	132618657	chr10:132618657:C:G	rs112875307	C	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr10	132678399	132678400	chr10:132678400:A:G	rs2786891	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr10	132787981	132787982	chr10:132787982:G:A	rs545697909	G	A	g	Hoxa9_MA0594.1	26	0	-	0	0	.
chr10	132967478	132967479	chr10:132967479:C:T	rs12776902	C	T	T	Hoxa9_MA0594.1	0	1	-	7.929248167365919	7.064062654643368	GCAATAAAACA
chr10	132975683	132975684	chr10:132975684:G:C	chr10:132975684:G:C	G	C	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr10	132975685	132975686	chr10:132975686:G:A	rs9419135	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr10	133174556	133174557	chr10:133174557:C:G	rs4838702	C	G	c	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr10	133335919	133335920	chr10:133335920:C:T	rs559826798	C	T	.	Hoxa9_MA0594.1	0	1	-	7.260118532919163	6.394933020196612	GCCATCCATCT
chr10	133445720	133445721	chr10:133445721:C:T	rs1371114042	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr10	133445751	133445752	chr10:133445752:G:A	chr10:133445752:G:A	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	216055	216056	chr11:216056:G:A	rs12226697	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	222935	222936	chr11:222936:T:C	rs3782117	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	233738	233739	chr11:233739:C:T	rs34700713	C	T	c	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	234170	234171	chr11:234171:T:C	rs11606986	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr11	234172	234173	chr11:234173:C:A	rs4980326	C	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	246233	246234	chr11:246234:A:G	rs10902114	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	270465	270466	chr11:270466:G:A	rs151178852	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	320804	320805	chr11:320805:G:T	rs1136853	G	T	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr11	320835	320836	chr11:320836:C:T	rs34481144	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr11	437780	437781	chr11:437781:G:C	rs56240062	G	C	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr11	437810	437811	chr11:437811:T:G	rs55917595	T	G	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr11	438661	438662	chr11:438662:A:G	rs7481614	A	G	-	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	698442	698443	chr11:698443:A:T	rs10902197	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr11	738301	738302	chr11:738302:C:T	rs558101808	C	T	C	Hoxa9_MA0594.1	0	1	-	9.45271635848298	8.58753084576043	GCCATAAATAA
chr11	863378	863379	chr11:863379:C:T	rs187647589	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	1060367	1060368	chr11:1060368:T:C	rs7106064	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	1336571	1336572	chr11:1336572:T:A	rs182548852	T	A	t	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	1360399	1360400	chr11:1360400:T:C	rs7109859	T	C	c	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	1458370	1458371	chr11:1458371:T:C	rs12221580	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	1543582	1543583	chr11:1543583:G:A	rs149098670	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	1564754	1564755	chr11:1564755:A:G	rs10768211	A	G	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	1649056	1649057	chr11:1649057:C:T	rs16926670	C	T	c	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	1662889	1662890	chr11:1662890:C:G	rs935422769	C	G	c	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	2075996	2075997	chr11:2075997:G:A	rs146146949	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	2213568	2213569	chr11:2213569:G:A	rs918657208	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	2409257	2409258	chr11:2409258:A:G	rs189919692	A	G	A	Hoxa9_MA0594.1	7	1	+	8.11177607157458	1.208842397871659	CCCATGAATCT
chr11	2409366	2409367	chr11:2409367:G:A	rs800347	G	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	2436119	2436120	chr11:2436120:A:G	rs11022821	A	G	A	Hoxa9_MA0594.1	3	1	+	8.51281655705086	5.531020129642001	CCAATAAATCC
chr11	2530162	2530163	chr11:2530163:C:A	rs762767174	C	A	c	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	2558112	2558113	chr11:2558113:G:A	rs2283165	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	2702899	2702900	chr11:2702900:C:T	rs231840	C	T	C	Hoxa9_MA0594.1	2	1	+	8.985332741304902	7.065001658177677	GCCGTCAATCA
chr11	2915050	2915051	chr11:2915051:G:A	rs12419420	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	3129681	3129682	chr11:3129682:T:C	rs6650170	T	C	C	Hoxa9_MA0594.1	8	1	+	7.260118532919163	0.38683048281927407	GCCATCCATCT
chr11	3215890	3215891	chr11:3215891:A:T	rs72848253	A	T	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	3237291	3237292	chr11:3237292:C:G	rs11601864	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr11	3381586	3381587	chr11:3381587:A:G	rs11026828	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	3424697	3424698	chr11:3424698:T:C	rs1812031	T	C	-	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	3607829	3607830	chr11:3607830:T:C	rs72852279	T	C	t	Hoxa9_MA0594.1	3	1	-	7.260118532919163	4.278322105510306	GCCATCCATCT
chr11	3624885	3624886	chr11:3624886:C:T	rs7115278	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	3877502	3877503	chr11:3877503:C:G	rs117473136	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	4132000	4132001	chr11:4132001:T:C	rs4910889	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr11	4134809	4134810	chr11:4134810:T:A	rs4910599	T	A	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	4699726	4699727	chr11:4699727:C:T	rs1565762	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	4978812	4978813	chr11:4978813:T:C	rs1455954	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	5043364	5043365	chr11:5043365:G:A	rs61880510	G	A	.	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	5132030	5132031	chr11:5132031:A:G	rs2472530	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	5145256	5145257	chr11:5145257:C:T	rs2472524	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	5258124	5258125	chr11:5258125:C:A	rs5010981	C	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	5421145	5421146	chr11:5421146:G:C	rs61894107	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	5550873	5550874	chr11:5550874:G:A	rs1874828	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	5683914	5683915	chr11:5683915:C:G	rs6578676	C	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	5689946	5689947	chr11:5689947:A:G	rs7129909	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr11	5689966	5689967	chr11:5689967:G:A	rs7935494	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	5719871	5719872	chr11:5719872:A:G	rs12281165	A	G	a	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	5719886	5719887	chr11:5719887:T:C	rs35378018	T	C	t	Hoxa9_MA0594.1	5	1	-	7.216289187599767	4.700145375803157	GCCATATATCC
chr11	5736831	5736832	chr11:5736832:T:C	rs7397032	T	C	t	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	5737866	5737867	chr11:5737867:C:A	rs78900468	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	5737866	5737867	chr11:5737867:C:T	chr11:5737867:C:T	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	5737867	5737868	chr11:5737868:G:A	rs7938089	G	A	g	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	5968062	5968063	chr11:5968063:G:A	rs7113548	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	6305145	6305146	chr11:6305146:T:C	rs4758406	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	6609178	6609179	chr11:6609179:T:C	rs11826498	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	6717496	6717497	chr11:6717497:T:C	rs17262495	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	6723130	6723131	chr11:6723131:G:A	rs7942521	G	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	6987755	6987756	chr11:6987756:A:G	rs2857907	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	7096569	7096570	chr11:7096570:G:C	rs10839720	G	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	7353558	7353559	chr11:7353559:A:G	rs12222809	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	7466223	7466224	chr11:7466224:C:T	rs182853472	C	T	C	Hoxa9_MA0594.1	5	1	+	10.652542986825011	8.232403979495325	CTCATCAATCA
chr11	7555284	7555285	chr11:7555285:T:G	rs142240503	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	7677348	7677349	chr11:7677349:C:G	rs138719275	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr11	8227310	8227311	chr11:8227311:G:C	rs12287681	G	C	g	Hoxa9_MA0594.1	28	0	+	0	0	.
chr11	8347399	8347400	chr11:8347400:T:C	rs4258369	T	C	T	Hoxa9_MA0594.1	7	1	-	9.15524832447614	2.252314650773221	GTTATCAATCA
chr11	8368737	8368738	chr11:8368738:C:A	rs79882537	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	8383600	8383601	chr11:8383601:G:A	rs12790154	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	8384730	8384731	chr11:8384731:G:A	rs73402046	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	8384758	8384759	chr11:8384759:G:C	rs186896345	G	C	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr11	8385025	8385026	chr11:8385026:G:A	rs149018689	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	8594846	8594847	chr11:8594847:G:A	rs117426848	G	A	G	Hoxa9_MA0594.1	5	1	-	10.046798085586536	7.626659078256848	GCTATCAATCA
chr11	8606137	8606138	chr11:8606138:T:C	rs79230711	T	C	T	Hoxa9_MA0594.1	7	1	-	7.801541603022757	0.8986079293198377	GACATGAATCA
chr11	8611003	8611004	chr11:8611004:A:G	rs11822779	A	G	A	Hoxa9_MA0594.1	3	1	+	9.552544425392455	6.570747997983595	TCCATAAATCA
chr11	8928920	8928921	chr11:8928921:T:C	rs2568074	T	C	T	Hoxa9_MA0594.1	7	1	-	9.764268392154055	2.861334718451134	GACATCAATCA
chr11	9026965	9026966	chr11:9026966:G:A	rs2056902	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	9591803	9591804	chr11:9591804:T:A	rs12416887	T	A	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	9956585	9956586	chr11:9956586:A:C	rs7103902	A	C	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	10038517	10038518	chr11:10038518:G:A	rs140978931	G	A	G	Hoxa9_MA0594.1	9	1	-	8.34024025881841	5.7155270402341705	GGAATAAATCA
chr11	10135563	10135564	chr11:10135564:A:G	rs115078489	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	10164741	10164742	chr11:10164742:G:A	rs17293593	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	10192078	10192079	chr11:10192079:T:A	rs11042655	T	A	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	10310348	10310349	chr11:10310349:A:G	rs550518652	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	10328990	10328991	chr11:10328991:G:A	rs7129220	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	10355443	10355444	chr11:10355444:G:A	rs4243912	G	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	10387790	10387791	chr11:10387791:G:C	rs142821254	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	10387834	10387835	chr11:10387835:G:C	rs750371	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	10496703	10496704	chr11:10496704:G:C	rs16907878	G	C	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	10497529	10497530	chr11:10497530:G:A	rs11042855	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr11	10497540	10497541	chr11:10497541:G:C	rs10840429	G	C	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr11	10669858	10669859	chr11:10669859:G:C	rs735045	G	C	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	10669889	10669890	chr11:10669890:G:A	rs903824	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	10822342	10822343	chr11:10822343:C:T	rs7115367	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	10843883	10843884	chr11:10843884:A:G	rs115907700	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	10993404	10993405	chr11:10993405:C:T	rs7941808	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	10993446	10993447	chr11:10993447:A:G	rs78578229	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	11010698	11010699	chr11:11010699:G:T	rs140216945	G	T	G	Hoxa9_MA0594.1	5	1	-	8.899082879431504	9.452499902096816	AACATCAATCA
chr11	11210460	11210461	chr11:11210461:G:T	rs11043167	G	T	G	Hoxa9_MA0594.1	1	1	-	8.4262430855653	6.223382309005595	GCCATAAATTT
chr11	11297820	11297821	chr11:11297821:C:G	rs4910299	C	G	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr11	11407602	11407603	chr11:11407603:G:A	rs11021836	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	11407615	11407616	chr11:11407616:A:T	rs11021837	A	T	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	11407618	11407619	chr11:11407619:G:A	rs139741919	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	11478246	11478247	chr11:11478247:A:G	rs6484940	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	11491259	11491260	chr11:11491260:A:G	rs1386424	A	G	A	Hoxa9_MA0594.1	3	1	+	7.66103487567689	4.679238448268031	CCTATGAATCA
chr11	11510746	11510747	chr11:11510747:T:C	rs3934815	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	11537734	11537735	chr11:11537735:C:T	rs4522166	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	11587946	11587947	chr11:11587947:T:G	rs10831647	T	G	T	Hoxa9_MA0594.1	4	1	+	8.351258581102782	1.442503801787561	CCAATAAATTA
chr11	11809550	11809551	chr11:11809551:A:G	rs12795665	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	11813548	11813549	chr11:11813549:G:A	rs189848015	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	11813573	11813574	chr11:11813574:C:T	rs186143272	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr11	11837029	11837030	chr11:11837030:G:A	rs4403802	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	11925397	11925398	chr11:11925398:C:G	rs189207474	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr11	12167561	12167562	chr11:12167562:C:G	rs56040273	C	G	C	Hoxa9_MA0594.1	9	1	+	7.838158659038301	1.0398276973374545	GTCATCCATCA
chr11	12269749	12269750	chr11:12269750:C:A	rs35712981	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	12281900	12281901	chr11:12281901:T:G	rs151099817	T	G	T	Hoxa9_MA0594.1	10	1	-	12.097509770600722	9.634354527964561	CCCATAAATCA
chr11	12568232	12568233	chr11:12568233:C:T	rs7935994	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	12595454	12595455	chr11:12595455:A:G	rs4757665	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	12707047	12707048	chr11:12707048:C:G	rs7949728	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	12803111	12803112	chr11:12803112:T:G	rs77840438	T	G	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	12843110	12843111	chr11:12843111:C:T	rs191126698	C	T	C	Hoxa9_MA0594.1	5	1	+	7.838158659038301	5.418019651708613	GTCATCCATCA
chr11	12980561	12980562	chr11:12980562:A:G	rs7926628	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	13039465	13039466	chr11:13039466:C:T	rs138654835	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	13039482	13039483	chr11:13039483:T:C	rs4757096	T	C	T	Hoxa9_MA0594.1	10	1	-	10.317685414819367	3.6809124290665984	GACATAAATCA
chr11	13083554	13083555	chr11:13083555:C:A	rs67675041	C	A	c	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	13109454	13109455	chr11:13109455:A:C	rs4757108	A	C	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	13271361	13271362	chr11:13271362:T:C	rs1384030	T	C	C	Hoxa9_MA0594.1	3	1	-	8.11177607157458	5.12997964416572	CCCATGAATCT
chr11	13873553	13873554	chr11:13873554:T:C	rs1020903597	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	13983376	13983377	chr11:13983377:T:C	rs139641385	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	14023226	14023227	chr11:14023227:G:A	rs113667147	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	14026310	14026311	chr11:14026311:A:G	rs10832161	A	G	A	Hoxa9_MA0594.1	3	1	+	10.185770791426988	7.20397436401813	ACCATAAATCT
chr11	14077170	14077171	chr11:14077171:T:A	rs2697830	T	A	T	Hoxa9_MA0594.1	3	1	-	11.967129168713758	5.12439252610607	GCCATCAATCA
chr11	14141853	14141854	chr11:14141854:T:C	rs10832192	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr11	14141866	14141867	chr11:14141867:G:T	rs11023104	G	T	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	14233249	14233250	chr11:14233250:C:T	rs12574121	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	14248889	14248890	chr11:14248890:A:C	rs190700435	A	C	A	Hoxa9_MA0594.1	10	1	+	8.431006454478752	5.967851211842591	TCAATAAATCA
chr11	14520995	14520996	chr11:14520996:C:T	rs16930264	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	15213946	15213947	chr11:15213947:C:G	rs7129739	C	G	C	Hoxa9_MA0594.1	9	1	+	9.050786138279621	2.2524551765787733	GCCATAAAACA
chr11	15275149	15275150	chr11:15275150:C:T	rs72860479	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	15323611	15323612	chr11:15323612:C:T	rs115164618	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	15472581	15472582	chr11:15472582:C:T	rs147042202	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	15719335	15719336	chr11:15719336:T:G	rs900863	T	G	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	16217829	16217830	chr11:16217830:T:C	rs10766303	T	C	T	Hoxa9_MA0594.1	10	1	-	8.88286440866876	2.246091422915992	GCAATGAATCA
chr11	16217843	16217844	chr11:16217844:C:G	rs17538814	C	G	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	16361572	16361573	chr11:16361573:A:T	rs11023928	A	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	16608745	16608746	chr11:16608746:A:T	rs10741703	A	T	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr11	16738572	16738573	chr11:16738573:T:C	rs747104422	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr11	16912200	16912201	chr11:16912201:C:G	rs118070314	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	17015984	17015985	chr11:17015985:G:A	rs187037561	G	A	G	Hoxa9_MA0594.1	2	1	-	11.544092747935409	9.623761664808185	CCCATCAATCA
chr11	17690232	17690233	chr11:17690233:C:T	rs3858499	C	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	17988173	17988174	chr11:17988174:C:T	rs2137777	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	18457730	18457731	chr11:18457731:C:T	rs187661984	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	18495369	18495370	chr11:18495370:A:G	rs2132302	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	18635210	18635211	chr11:18635211:G:A	rs77324643	G	A	G	Hoxa9_MA0594.1	9	1	-	7.5836428429503755	4.958929624366137	GCTATCAATCC
chr11	18647220	18647221	chr11:18647221:T:A	rs35433504	T	A	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	18715394	18715395	chr11:18715395:G:A	rs3887900	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	19078930	19078931	chr11:19078931:T:C	rs10741758	T	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	19316481	19316482	chr11:19316482:C:T	rs10734274	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	19475211	19475212	chr11:19475212:C:T	rs11025150	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	19653255	19653256	chr11:19653256:G:C	rs115880765	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	19813442	19813443	chr11:19813443:A:G	rs10766596	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	19952562	19952563	chr11:19952563:G:C	rs7104157	G	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	19955958	19955959	chr11:19955959:G:A	rs117795526	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	20035824	20035825	chr11:20035825:T:G	rs6483634	T	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr11	20047715	20047716	chr11:20047716:A:G	rs77126536	A	G	A	Hoxa9_MA0594.1	8	1	-	9.980405685077507	3.1071176349776173	ACAATCAATCA
chr11	20221744	20221745	chr11:20221745:A:G	rs1356981	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	20373615	20373616	chr11:20373616:C:A	rs11607982	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr11	20612246	20612247	chr11:20612247:A:G	rs79071855	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr11	20627857	20627858	chr11:20627858:G:A	rs3819252	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	21370940	21370941	chr11:21370941:C:T	rs4151056	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	21470757	21470758	chr11:21470758:G:A	rs146705740	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	21481447	21481448	chr11:21481448:G:C	rs6483772	G	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	21825156	21825157	chr11:21825157:G:A	rs1894058	G	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	22009019	22009020	chr11:22009020:T:C	rs10734310	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	22414642	22414643	chr11:22414643:G:A	rs932085	G	A	A	Hoxa9_MA0594.1	9	1	-	8.62774971750127	6.003036498917031	CCCATAAAACA
chr11	22414654	22414655	chr11:22414655:T:A	rs932084	T	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	22471295	22471296	chr11:22471296:C:T	rs75510551	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	22497602	22497603	chr11:22497603:G:T	rs73477579	G	T	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	22509077	22509078	chr11:22509078:G:C	rs7942692	G	C	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr11	22834792	22834793	chr11:22834793:A:G	rs35699552	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	22839478	22839479	chr11:22839479:C:G	rs7940885	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	22901143	22901144	chr11:22901144:A:G	rs1019215	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	23056989	23056990	chr11:23056990:A:C	rs2433488	A	C	C	Hoxa9_MA0594.1	7	1	+	9.642272946632424	4.657731393090925	ATAATAAATCA
chr11	23124083	23124084	chr11:23124084:A:T	rs971536	A	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr11	23519291	23519292	chr11:23519292:C:T	rs10834125	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	23590578	23590579	chr11:23590579:A:C	rs11027387	A	C	A	Hoxa9_MA0594.1	8	1	-	11.075579407603364	6.120683477664895	GTCATCAATCA
chr11	23992699	23992700	chr11:23992700:A:T	rs897869641	A	T	A	Hoxa9_MA0594.1	4	1	-	9.60598952037383	2.6972347410586095	GTCATCAATCT
chr11	24234619	24234620	chr11:24234620:C:G	rs2068454	C	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr11	24415504	24415505	chr11:24415505:G:A	rs56037957	G	A	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	24550870	24550871	chr11:24550871:C:G	rs79933902	C	G	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	24678465	24678466	chr11:24678466:A:G	rs10834425	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	24867818	24867819	chr11:24867819:T:C	rs11605315	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	25559612	25559613	chr11:25559613:C:T	rs7120522	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	26119796	26119797	chr11:26119797:A:C	rs147779759	A	C	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	26234933	26234934	chr11:26234934:G:A	rs12161776	G	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	26326933	26326934	chr11:26326934:T:A	rs11827865	T	A	A	Hoxa9_MA0594.1	1	1	+	10.084422038576625	8.773111023127315	CTAATAAATCA
chr11	26665351	26665352	chr11:26665352:A:C	rs17309342	A	C	A	Hoxa9_MA0594.1	8	1	-	8.66099466428206	3.7060987343435903	TTCATAAATCA
chr11	26777398	26777399	chr11:26777399:T:C	rs116904244	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	26851666	26851667	chr11:26851667:A:T	rs11819813	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	26960104	26960105	chr11:26960105:G:C	rs72874716	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr11	27022929	27022930	chr11:27022930:G:A	rs9971528	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	27031851	27031852	chr11:27031852:C:T	rs4923412	C	T	C	Hoxa9_MA0594.1	0	1	-	9.503973926077597	8.638788413355046	GCCATCAATCC
chr11	27190993	27190994	chr11:27190994:A:C	rs7395215	A	C	A	Hoxa9_MA0594.1	0	1	+	9.139216866859913	9.581365958804113	ACCATGAATCA
chr11	27202068	27202069	chr11:27202069:G:A	rs10835127	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	27202072	27202073	chr11:27202073:T:C	rs6484272	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	27242284	27242285	chr11:27242285:C:G	rs11604730	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr11	27613577	27613578	chr11:27613578:C:T	rs550481637	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	27718363	27718364	chr11:27718364:G:T	rs75707145	G	T	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	27718401	27718402	chr11:27718402:C:T	rs10835215	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	27758193	27758194	chr11:27758194:T:C	rs79637814	T	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	27874580	27874581	chr11:27874581:C:G	rs4922800	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	27984774	27984775	chr11:27984775:C:T	rs12363812	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	28198707	28198708	chr11:28198708:C:G	rs115271657	C	G	C	Hoxa9_MA0594.1	9	1	+	9.642272946632424	2.8439419849315772	ATAATAAATCA
chr11	28269030	28269031	chr11:28269031:T:C	rs17571754	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	28742215	28742216	chr11:28742216:C:T	rs17657172	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	28835908	28835909	chr11:28835909:C:T	rs72889479	C	T	C	Hoxa9_MA0594.1	9	1	+	7.700782005789437	5.076068787205198	GTCCTAAATCA
chr11	28859503	28859504	chr11:28859504:A:T	chr11:28859504:A:T	A	T	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	28872745	28872746	chr11:28872746:A:G	rs7950534	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	28922838	28922839	chr11:28922839:C:T	rs2959112	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	28922851	28922852	chr11:28922852:C:G	rs1433690	C	G	C	Hoxa9_MA0594.1	5	1	-	7.991314647558364	9.95404143668966	GTAATGAATCA
chr11	30155630	30155631	chr11:30155631:C:T	rs12272903	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	30270628	30270629	chr11:30270629:G:T	rs11031024	G	T	T	Hoxa9_MA0594.1	1	1	-	8.01767889594621	5.814818119386504	ACAATGAATCA
chr11	30423132	30423133	chr11:30423133:G:C	rs485083	G	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	30543360	30543361	chr11:30543361:G:A	rs11031128	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	30546336	30546337	chr11:30546337:C:T	rs7940806	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	30741114	30741115	chr11:30741115:C:T	rs625653	C	T	T	Hoxa9_MA0594.1	9	1	+	9.130625221022317	6.5059120024380785	GCTATAAATCT
chr11	30758330	30758331	chr11:30758331:A:G	rs138181837	A	G	A	Hoxa9_MA0594.1	2	1	+	8.51281655705086	3.110454540216222	CCAATAAATCC
chr11	31141859	31141860	chr11:31141860:C:A	rs578238365	C	A	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	31141902	31141903	chr11:31141903:G:C	rs74532221	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	31645928	31645929	chr11:31645929:G:A	chr11:31645929:G:A	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	31794622	31794623	chr11:31794623:C:G	chr11:31794623:C:G	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr11	31983312	31983313	chr11:31983313:T:C	rs2745891	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	32090435	32090436	chr11:32090436:C:T	rs148674551	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	32508962	32508963	chr11:32508963:A:G	rs16923363	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	32631050	32631051	chr11:32631051:T:C	rs12284205	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	32713121	32713122	chr11:32713122:G:A	rs1386181	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	32891110	32891111	chr11:32891111:T:C	rs2746036	T	C	C	Hoxa9_MA0594.1	1	1	+	8.159236377169226	9.050786138279621	GTCATAAAACA
chr11	33690606	33690607	chr11:33690607:T:C	rs59214554	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	33701276	33701277	chr11:33701277:C:T	rs831616	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	33724255	33724256	chr11:33724256:T:C	rs563609750	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	33776144	33776145	chr11:33776145:G:A	rs4756002	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr11	33778986	33778987	chr11:33778987:A:T	rs11032380	A	T	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	33779020	33779021	chr11:33779021:G:A	rs565212450	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	33862111	33862112	chr11:33862112:G:A	rs879414	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	33876729	33876730	chr11:33876730:A:G	rs10768033	A	G	A	Hoxa9_MA0594.1	2	1	+	7.8637947703911975	2.4614327535565614	GCAGTCAATCA
chr11	34150552	34150553	chr11:34150553:A:G	rs994997414	A	G	a	Hoxa9_MA0594.1	3	1	+	8.219694000462	5.237897573053141	CAAATCAATCA
chr11	34244283	34244284	chr11:34244284:C:T	rs143928743	C	T	C	Hoxa9_MA0594.1	9	1	+	8.004489436656911	5.379776218072672	GCAATCTATCA
chr11	34342066	34342067	chr11:34342067:C:T	rs74841780	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	34411352	34411353	chr11:34411353:G:A	rs11032669	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	34442324	34442325	chr11:34442325:G:A	rs17881482	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr11	34442327	34442328	chr11:34442328:T:C	rs7120960	T	C	t	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	34583887	34583888	chr11:34583888:T:G	rs5028798	T	G	G	Hoxa9_MA0594.1	4	1	+	8.431006454478752	1.5222516751635324	TCAATAAATCA
chr11	34665645	34665646	chr11:34665646:A:G	rs704731	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	34750953	34750954	chr11:34750954:T:A	rs7952315	T	A	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	34772884	34772885	chr11:34772885:T:A	rs1396888	T	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	34788462	34788463	chr11:34788463:G:A	rs10742326	G	A	-	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	34850744	34850745	chr11:34850745:T:C	rs7129533	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	34866453	34866454	chr11:34866454:T:G	rs200664864	T	G	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr11	34916904	34916905	chr11:34916905:T:C	rs561660620	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	34916908	34916909	chr11:34916909:A:G	rs3818397	A	G	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	35089744	35089745	chr11:35089745:T:C	rs11032995	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	35126145	35126146	chr11:35126146:A:G	rs74972234	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr11	35165858	35165859	chr11:35165859:T:A	rs35796444	T	A	T	Hoxa9_MA0594.1	4	1	+	9.581365958804113	2.672611179488892	CCCATGAATCA
chr11	35182799	35182800	chr11:35182800:G:A	rs77673209	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	35437397	35437398	chr11:35437398:A:G	rs599338	A	G	G	Hoxa9_MA0594.1	10	1	+	8.134870038543875	1.4980970527911053	CCAATATATCA
chr11	35536120	35536121	chr11:35536121:C:T	rs632358	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	35568200	35568201	chr11:35568201:G:A	rs116422040	G	A	G	Hoxa9_MA0594.1	9	1	-	8.044303216718815	5.419589998134576	GTAATAAATCC
chr11	35605812	35605813	chr11:35605813:T:C	rs4755418	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr11	35616122	35616123	chr11:35616123:C:T	rs12418696	C	T	C	Hoxa9_MA0594.1	2	1	+	9.050786138279621	7.130455055152399	GCCATAAAACA
chr11	35812935	35812936	chr11:35812936:G:A	rs56693720	G	A	.	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	35813417	35813418	chr11:35813418:A:G	rs2970318	A	G	.	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	35889167	35889168	chr11:35889168:A:G	rs673129	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	36069160	36069161	chr11:36069161:A:G	rs59795791	A	G	A	Hoxa9_MA0594.1	3	1	+	8.4262430855653	5.444446658156442	GCCATAAATTT
chr11	36156824	36156825	chr11:36156825:G:A	rs11033468	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	36464368	36464369	chr11:36464369:C:A	rs7127484	C	A	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	36703151	36703152	chr11:36703152:A:G	rs74479218	A	G	A	Hoxa9_MA0594.1	5	1	+	8.159236377169226	5.643092565372616	GTCATAAAACA
chr11	36941828	36941829	chr11:36941829:A:G	rs10836641	A	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	37026828	37026829	chr11:37026829:T:C	rs10836663	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	37074969	37074970	chr11:37074970:G:A	rs11033927	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr11	37088192	37088193	chr11:37088193:C:T	rs568275022	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	37088295	37088296	chr11:37088296:A:G	rs145735567	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	37203985	37203986	chr11:37203986:A:G	rs72951398	A	G	a	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	38554263	38554264	chr11:38554264:C:G	rs79837559	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	39014093	39014094	chr11:39014094:T:C	rs2114464	T	C	T	Hoxa9_MA0594.1	5	1	-	7.727146254177281	5.211002442380671	ACCCTAAATCA
chr11	39014103	39014104	chr11:39014104:G:A	rs16926339	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	39247906	39247907	chr11:39247907:T:C	rs1021645	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	39288470	39288471	chr11:39288471:A:G	rs7124898	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	39501086	39501087	chr11:39501087:A:C	rs4628651	A	C	C	Hoxa9_MA0594.1	7	1	+	9.256408009457576	4.2718664559160775	CCCATATATCA
chr11	40356067	40356068	chr11:40356068:T:C	rs34034994	T	C	T	Hoxa9_MA0594.1	10	1	-	12.097509770600722	5.460736784847953	CCCATAAATCA
chr11	40501461	40501462	chr11:40501462:A:T	rs7932464	A	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	40568460	40568461	chr11:40568461:A:C	rs11035933	A	C	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	41081922	41081923	chr11:41081923:A:G	rs11036220	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	41256271	41256272	chr11:41256272:A:G	rs11036319	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	41499332	41499333	chr11:41499333:G:A	rs7114220	G	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	41727435	41727436	chr11:41727436:T:C	rs1902501	T	C	T	Hoxa9_MA0594.1	7	1	-	9.929418333235837	3.0264846595329167	GCAATAAATCT
chr11	42539236	42539237	chr11:42539237:A:T	rs7940910	A	T	A	Hoxa9_MA0594.1	6	1	+	11.205960009490326	8.364858248347181	CTCATAAATCA
chr11	42571767	42571768	chr11:42571768:C:T	rs10768834	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	42602004	42602005	chr11:42602005:C:A	rs11036958	C	A	c	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	42974983	42974984	chr11:42974984:A:G	rs73523401	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	42975011	42975012	chr11:42975012:A:C	rs11037192	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	43378733	43378734	chr11:43378734:C:T	rs17508618	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	43574573	43574574	chr11:43574574:C:G	rs76404889	C	G	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	43738664	43738665	chr11:43738665:C:T	rs11037589	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	44064136	44064137	chr11:44064137:C:A	rs7127924	C	A	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	44261746	44261747	chr11:44261747:T:C	rs4755239	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	44266499	44266500	chr11:44266500:G:C	rs77204861	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	44326905	44326906	chr11:44326906:C:T	rs77288696	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	44374986	44374987	chr11:44374987:T:C	rs1158267	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	44386326	44386327	chr11:44386327:G:T	rs78458520	G	T	G	Hoxa9_MA0594.1	2	1	-	8.66099466428206	7.539456693368356	TTCATAAATCA
chr11	44419419	44419420	chr11:44419420:C:T	rs7936636	C	T	c	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	44548425	44548426	chr11:44548426:T:A	rs111310659	T	A	T	Hoxa9_MA0594.1	10	1	-	9.581365958804113	8.11177607157458	CCCATGAATCA
chr11	44635597	44635598	chr11:44635598:C:G	rs57250710	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	44796363	44796364	chr11:44796364:G:T	rs75806076	G	T	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	44850186	44850187	chr11:44850187:C:T	rs835796	C	T	N	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	44850227	44850228	chr11:44850228:A:G	rs835797	A	G	a	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	44894477	44894478	chr11:44894478:G:C	rs190100454	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	44938743	44938744	chr11:44938744:T:C	rs835994	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr11	44985189	44985190	chr11:44985190:A:G	rs7107225	A	G	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	45105389	45105390	chr11:45105390:T:A	rs56396869	T	A	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	45280693	45280694	chr11:45280694:C:T	rs58355417	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	45366945	45366946	chr11:45366946:G:C	rs2242043	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	45452027	45452028	chr11:45452028:G:A	rs1488664	G	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	45683440	45683441	chr11:45683441:C:T	rs7101995	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr11	45825403	45825404	chr11:45825404:C:T	rs77031894	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	45918918	45918919	chr11:45918919:C:G	chr11:45918919:C:G	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr11	46191859	46191860	chr11:46191860:G:A	rs12808446	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	46687686	46687687	chr11:46687687:C:T	rs56164188	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	46730297	46730298	chr11:46730298:T:G	rs3136480	T	G	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	46957471	46957472	chr11:46957472:A:G	rs4752816	A	G	g	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	47379619	47379620	chr11:47379620:A:C	rs11601603	A	C	A	Hoxa9_MA0594.1	3	1	+	8.306671999370346	4.378457574891105	CCCATCCATCA
chr11	47395631	47395632	chr11:47395632:A:C	rs10769263	A	C	A	Hoxa9_MA0594.1	0	1	+	9.642272946632424	10.084422038576625	ATAATAAATCA
chr11	47507484	47507485	chr11:47507485:G:A	rs17726787	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	47651917	47651918	chr11:47651918:T:A	rs61897975	T	A	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr11	47715505	47715506	chr11:47715506:C:G	rs576183829	C	G	C	Hoxa9_MA0594.1	2	1	+	7.968539260925265	1.4446392731769255	CTCATACATCA
chr11	48088395	48088396	chr11:48088396:A:G	rs2904315	A	G	A	Hoxa9_MA0594.1	10	1	+	9.895832972794834	3.2590599870420647	GCCATAAATTA
chr11	48249734	48249735	chr11:48249735:C:T	rs1503169	C	T	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr11	49977484	49977485	chr11:49977485:G:T	rs12799207	G	T	.	Hoxa9_MA0594.1	9	1	-	7.440758349612847	4.3729285167167555	CCAGTCAATCA
chr11	54627853	54627854	chr11:54627854:G:T	rs4881761	G	T	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	56597930	56597931	chr11:56597931:G:C	rs11228672	G	C	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	56843210	56843211	chr11:56843211:C:T	rs7105581	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr11	57003146	57003147	chr11:57003147:C:T	rs61886716	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr11	57203324	57203325	chr11:57203325:C:T	rs138474255	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	57385741	57385742	chr11:57385742:C:G	rs943689444	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr11	57402402	57402403	chr11:57402403:A:T	rs77699414	A	T	T	Hoxa9_MA0594.1	6	1	+	8.612424164967203	5.7713224038240565	GTCATCAATCC
chr11	57642064	57642065	chr11:57642065:G:A	rs1783827	G	A	A	Hoxa9_MA0594.1	1	1	-	7.632183602891756	6.740633841781361	ACCATCAAACA
chr11	57741105	57741106	chr11:57741106:A:G	rs151107141	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	58532880	58532881	chr11:58532881:T:C	rs2515353	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	58777410	58777411	chr11:58777411:T:C	rs114685754	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	59097070	59097071	chr11:59097071:T:A	rs11229800	T	A	t	Hoxa9_MA0594.1	10	1	+	7.643262731242535	9.112852618472068	GTCATGAATCT
chr11	59281311	59281312	chr11:59281312:C:T	rs35470396	C	T	C	Hoxa9_MA0594.1	3	1	-	7.64612345596233	10.627919883371188	CCCGTAAATCT
chr11	59716219	59716220	chr11:59716220:A:C	rs518427	A	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	59756619	59756620	chr11:59756620:C:T	rs76068108	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr11	60194209	60194210	chr11:60194210:T:C	chr11:60194210:T:C	T	C	.	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	60332889	60332890	chr11:60332890:T:G	rs2868120	T	G	G	Hoxa9_MA0594.1	4	1	+	9.03874180895376	2.1299870296385404	CGCATAAATCA
chr11	60477102	60477103	chr11:60477103:A:G	chr11:60477103:A:G	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	60511854	60511855	chr11:60511855:C:T	rs59358103	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	60530494	60530495	chr11:60530495:A:C	rs2186919	A	C	A	Hoxa9_MA0594.1	4	1	-	7.147364983124122	0.2386102038089022	GTCCTCAATCA
chr11	60684469	60684470	chr11:60684470:C:A	rs647376	C	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	60915664	60915665	chr11:60915665:C:T	rs78748308	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	60915682	60915683	chr11:60915683:G:A	chr11:60915683:G:A	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr11	61113193	61113194	chr11:61113194:A:T	rs7932247	A	T	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	61298096	61298097	chr11:61298097:T:C	rs148963360	T	C	T	Hoxa9_MA0594.1	7	1	-	8.68180464866152	1.7788709749586	ACCATTAATCA
chr11	61545501	61545502	chr11:61545502:A:G	rs922056260	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	61678879	61678880	chr11:61678880:A:G	rs4963304	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	61918863	61918864	chr11:61918864:G:A	rs2524288	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	61954245	61954246	chr11:61954246:C:T	rs78054615	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	62185382	62185383	chr11:62185383:G:A	rs7940224	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr11	62189597	62189598	chr11:62189598:G:A	rs2232931	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	62190066	62190067	chr11:62190067:A:T	rs2232936	A	T	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	62242138	62242139	chr11:62242139:C:T	rs2232946	C	T	C	Hoxa9_MA0594.1	0	1	-	7.260118532919163	6.394933020196612	GCCATCCATCT
chr11	62385343	62385344	chr11:62385344:G:A	rs7115632	G	A	-	Hoxa9_MA0594.1	19	0	-	0	0	.
chr11	62480002	62480003	chr11:62480003:G:A	rs626828	G	A	G	Hoxa9_MA0594.1	10	1	-	7.7140234448373395	8.707588800243967	CCTATAAATCC
chr11	62569101	62569102	chr11:62569102:C:G	rs114404029	C	G	c	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	62574772	62574773	chr11:62574773:C:T	chr11:62574773:C:T	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	62994949	62994950	chr11:62994950:C:T	rs953894	C	T	T	Hoxa9_MA0594.1	3	1	-	7.440758349612847	10.422554777021706	CCAGTCAATCA
chr11	63036052	63036053	chr11:63036053:G:C	rs1944037	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	63479126	63479127	chr11:63479127:G:A	rs187923748	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	63495221	63495222	chr11:63495222:T:C	rs9971506	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	63533735	63533736	chr11:63533736:A:C	rs9633988	A	C	A	Hoxa9_MA0594.1	10	1	+	9.341231971375704	6.8780767287395435	CACATCAATCA
chr11	63610355	63610356	chr11:63610356:T:C	rs17158439	T	C	C	Hoxa9_MA0594.1	7	1	-	8.01767889594621	1.11474522224329	ACAATGAATCA
chr11	63803010	63803011	chr11:63803011:C:T	rs535587528	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	64185718	64185719	chr11:64185719:G:A	rs116458591	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	64269398	64269399	chr11:64269399:G:A	rs562915973	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	64406778	64406779	chr11:64406779:T:G	rs111870490	T	G	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	64600116	64600117	chr11:64600117:A:G	rs2022051	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr11	64778992	64778993	chr11:64778993:C:T	rs73494232	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	64779019	64779020	chr11:64779020:A:G	rs575793877	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	64862345	64862346	chr11:64862346:C:T	rs4930281	C	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	65290797	65290798	chr11:65290798:C:T	rs71468697	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	65498765	65498766	chr11:65498766:T:C	rs150458267	T	C	T	Hoxa9_MA0594.1	10	1	-	7.605819354503911	0.9690463687511421	GTCATCAAACA
chr11	65653641	65653642	chr11:65653642:A:T	rs573293428	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	65871902	65871903	chr11:65871903:C:T	rs2234458	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	66079522	66079523	chr11:66079523:T:A	rs1440881331	T	A	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	66372321	66372322	chr11:66372322:A:T	rs374661012	A	T	-	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	66678328	66678329	chr11:66678329:A:G	chr11:66678329:A:G	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	66882125	66882126	chr11:66882126:T:G	rs76693359	T	G	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	67620023	67620024	chr11:67620024:T:A	rs12801378	T	A	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr11	67626262	67626263	chr11:67626263:A:C	rs2514017	A	C	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	67626292	67626293	chr11:67626293:A:T	rs2514018	A	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	67654466	67654467	chr11:67654467:A:G	rs11828473	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr11	67666286	67666287	chr11:67666287:G:A	rs1551887	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	67702044	67702045	chr11:67702045:A:G	rs7929286	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	67774334	67774335	chr11:67774335:A:T	rs60353355	A	T	-	Hoxa9_MA0594.1	10	1	+	8.169295346121482	6.699705458891948	CCCCTAAATCA
chr11	68219217	68219218	chr11:68219218:T:G	rs4345973	T	G	t	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	68413197	68413198	chr11:68413198:C:T	rs72934434	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr11	68413205	68413206	chr11:68413206:G:A	rs181355434	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr11	68442140	68442141	chr11:68442141:G:A	rs76311938	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	68470479	68470480	chr11:68470480:G:A	rs75950262	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	68745777	68745778	chr11:68745778:A:G	rs10791994	A	G	G	Hoxa9_MA0594.1	3	1	+	8.58753084576043	5.605734418351572	ACCATAAATAA
chr11	69462514	69462515	chr11:69462515:C:T	rs11263456	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	69583303	69583304	chr11:69583304:G:A	rs75445226	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr11	69583327	69583328	chr11:69583328:T:A	rs77516128	T	A	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	69639367	69639368	chr11:69639368:A:T	rs36225069	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr11	69639378	69639379	chr11:69639379:G:A	rs1030518817	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	69662201	69662202	chr11:69662202:T:C	rs1031862841	T	C	.	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	69764810	69764811	chr11:69764811:G:T	rs2156582	G	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	69836601	69836602	chr11:69836602:G:T	rs10752572	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	69836935	69836936	chr11:69836936:T:C	rs6598103	T	C	T	Hoxa9_MA0594.1	7	1	-	7.147364983124122	0.2444313094212025	GTCCTCAATCA
chr11	69845012	69845013	chr11:69845013:T:C	rs73525644	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	70037089	70037090	chr11:70037090:C:T	rs10899471	C	T	C	Hoxa9_MA0594.1	2	1	+	7.260118532919163	5.339787449791941	GCCATCCATCT
chr11	70098517	70098518	chr11:70098518:C:A	rs76485832	C	A	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr11	70116941	70116942	chr11:70116942:C:T	rs61885477	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	70122817	70122818	chr11:70122818:C:T	rs75375906	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	70194020	70194021	chr11:70194021:A:G	rs693041	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	70241916	70241917	chr11:70241917:T:G	rs646696	T	G	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	70255919	70255920	chr11:70255920:T:G	rs1260606166	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	70291617	70291618	chr11:70291618:C:T	chr11:70291618:C:T	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	70335278	70335279	chr11:70335279:C:T	rs73517173	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	70410538	70410539	chr11:70410539:C:T	rs115257932	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr11	70862301	70862302	chr11:70862302:T:C	rs76907029	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	71448528	71448529	chr11:71448529:T:G	rs1026182896	T	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	71450609	71450610	chr11:71450610:G:A	rs12793530	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	71489273	71489274	chr11:71489274:T:C	rs949178	T	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	71557970	71557971	chr11:71557971:A:G	rs75468142	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	71568984	71568985	chr11:71568985:C:A	rs111626347	C	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr11	71569004	71569005	chr11:71569005:C:T	rs559984723	C	T	C	Hoxa9_MA0594.1	2	1	+	7.022605952173604	5.102274869046382	GCCGTGAATCA
chr11	71569005	71569006	chr11:71569006:G:A	rs150828882	G	A	G	Hoxa9_MA0594.1	3	1	+	7.022605952173604	10.004402379582464	GCCGTGAATCA
chr11	71579623	71579624	chr11:71579624:C:G	rs2015464	C	G	c	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	71579642	71579643	chr11:71579643:G:A	rs141497880	G	A	G	Hoxa9_MA0594.1	2	1	-	7.022605952173604	5.102274869046382	GCCGTGAATCA
chr11	71775573	71775574	chr11:71775574:T:C	rs10898562	T	C	t	Hoxa9_MA0594.1	8	1	+	9.929418333235837	3.0561302831359476	GCAATAAATCT
chr11	71785330	71785331	chr11:71785331:T:G	rs9666153	T	G	g	Hoxa9_MA0594.1	0	1	-	8.300655674909967	8.742804766854166	ATCATAAATCC
chr11	71915042	71915043	chr11:71915043:G:T	rs7113974	G	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	72123451	72123452	chr11:72123452:A:G	rs60401386	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	72520971	72520972	chr11:72520972:G:T	rs532078184	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	72679594	72679595	chr11:72679595:A:G	rs341053	A	G	A	Hoxa9_MA0594.1	10	1	+	9.708665347141455	3.071892361388686	GTTATAAATCA
chr11	72722052	72722053	chr11:72722053:A:C	rs1552224	A	C	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	72735685	72735686	chr11:72735686:A:C	rs12289259	A	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	72865876	72865877	chr11:72865877:T:A	rs963399145	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	73141872	73141873	chr11:73141873:T:C	rs764999746	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	73259457	73259458	chr11:73259458:T:C	rs9988805	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	73716318	73716319	chr11:73716319:G:A	rs138322867	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	73976018	73976019	chr11:73976019:A:G	rs45605931	A	G	A	Hoxa9_MA0594.1	7	1	+	9.546990161384072	2.644056487681151	GCCATTAATCA
chr11	74325707	74325708	chr11:74325708:C:T	rs634243	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	74325742	74325743	chr11:74325743:G:A	chr11:74325743:G:A	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr11	74382946	74382947	chr11:74382947:C:T	rs10898983	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	74452790	74452791	chr11:74452791:C:T	rs2367995	C	T	C	Hoxa9_MA0594.1	1	1	+	8.476262915039317	7.58471315392892	CCCATCAATAA
chr11	74579906	74579907	chr11:74579907:T:C	rs10793093	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	74650568	74650569	chr11:74650569:T:C	rs1944933	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr11	74650928	74650929	chr11:74650929:T:C	rs7948084	T	C	T	Hoxa9_MA0594.1	1	1	+	8.581246790906087	9.472796552016483	CTCATAAATTA
chr11	75153234	75153235	chr11:75153235:A:G	rs4944992	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr11	75247902	75247903	chr11:75247903:G:T	rs1783472	G	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	75264569	75264570	chr11:75264570:A:G	rs35316816	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	75264617	75264618	chr11:75264618:G:A	rs2282600	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	75385018	75385019	chr11:75385019:C:T	rs676703	C	T	T	Hoxa9_MA0594.1	3	1	-	9.115713343191864	12.097509770600722	CCCGTAAATCA
chr11	75454382	75454383	chr11:75454383:A:G	rs79025449	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	75715256	75715257	chr11:75715257:T:C	rs80020106	T	C	T	Hoxa9_MA0594.1	4	1	+	9.02967993770463	2.1209251583894106	CCCATAAATAA
chr11	75723908	75723909	chr11:75723909:A:T	rs73502472	A	T	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	75939875	75939876	chr11:75939876:A:G	rs12785513	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	76121270	76121271	chr11:76121271:T:C	rs628957	T	C	T	Hoxa9_MA0594.1	7	1	-	9.461778229732111	2.5588445560291917	GGCATAAATCA
chr11	76493336	76493337	chr11:76493337:G:A	rs7940390	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	76608292	76608293	chr11:76608293:C:T	rs151224530	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	76614065	76614066	chr11:76614066:A:G	rs58547072	A	G	G	Hoxa9_MA0594.1	6	1	+	7.438771319837264	0.6211705340816069	GGCATCAATCT
chr11	76636089	76636090	chr11:76636090:G:A	rs117930687	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	76642706	76642707	chr11:76642707:T:A	rs2155223	T	A	-	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	76689829	76689830	chr11:76689830:G:A	rs7934979	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	76709481	76709482	chr11:76709482:T:G	rs4619182	T	G	G	Hoxa9_MA0594.1	5	1	-	9.552544425392455	8.99912740272714	TCCATAAATCA
chr11	76709501	76709502	chr11:76709502:G:A	rs4261306	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	76742989	76742990	chr11:76742990:T:C	rs7936685	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	76835926	76835927	chr11:76835927:A:G	rs1149578	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	77004257	77004258	chr11:77004258:G:A	rs7105694	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	77037137	77037138	chr11:77037138:A:G	rs1894008	A	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	77037154	77037155	chr11:77037155:G:A	rs11237061	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	77395688	77395689	chr11:77395689:G:C	rs539733184	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	77715049	77715050	chr11:77715050:G:A	rs501153	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	77856163	77856164	chr11:77856164:C:G	rs687615	C	G	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	78063552	78063553	chr11:78063553:T:C	rs2282639	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	78079606	78079607	chr11:78079607:T:C	rs534418	T	C	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	78079608	78079609	chr11:78079609:G:C	rs8875	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr11	78142433	78142434	chr11:78142434:C:T	rs617700	C	T	C	Hoxa9_MA0594.1	3	1	-	7.022605952173604	10.004402379582464	GCCGTGAATCA
chr11	78162093	78162094	chr11:78162094:A:T	rs115494535	A	T	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	78225017	78225018	chr11:78225018:A:C	rs1385601	A	C	C	Hoxa9_MA0594.1	7	1	+	10.497539281484224	5.512997727942725	GCCATCAATCT
chr11	78651800	78651801	chr11:78651801:T:C	rs59843379	T	C	T	Hoxa9_MA0594.1	7	1	-	7.173729231511967	0.27079555780904707	ACCCTCAATCA
chr11	78809058	78809059	chr11:78809059:C:T	rs144108770	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	79101938	79101939	chr11:79101939:T:G	rs7936979	T	G	t	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	79277193	79277194	chr11:79277194:C:T	rs115002180	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	80082682	80082683	chr11:80082683:A:G	rs12421802	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	80122242	80122243	chr11:80122243:A:G	rs1528632	A	G	A	Hoxa9_MA0594.1	10	1	+	9.53100501591131	2.894232030158541	CTAATCAATCA
chr11	80303722	80303723	chr11:80303723:T:C	rs12224443	T	C	T	Hoxa9_MA0594.1	7	1	-	7.390499134806127	0.48756546110320714	CCCATACATCT
chr11	80326750	80326751	chr11:80326751:A:G	rs7951568	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	80421333	80421334	chr11:80421334:T:C	rs12271554	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	80421355	80421356	chr11:80421356:A:G	rs12277775	A	G	G	Hoxa9_MA0594.1	7	1	+	8.29006281175359	1.3871291380506698	ATTATCAATCA
chr11	80444009	80444010	chr11:80444010:T:A	rs2443955	T	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	80520571	80520572	chr11:80520572:G:C	rs115298435	G	C	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	80586942	80586943	chr11:80586943:C:A	rs12361601	C	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	80822308	80822309	chr11:80822309:A:C	rs4945437	A	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	80838420	80838421	chr11:80838421:G:A	rs11232361	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	81208607	81208608	chr11:81208608:G:C	rs61888606	G	C	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	81319903	81319904	chr11:81319904:C:T	rs7931231	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	81332476	81332477	chr11:81332477:G:A	rs7118816	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	81484375	81484376	chr11:81484376:G:A	rs7928135	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	81763428	81763429	chr11:81763429:C:T	rs11232844	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	82021344	82021345	chr11:82021345:A:T	rs11603483	A	T	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	82462570	82462571	chr11:82462571:G:A	rs75212601	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	82989367	82989368	chr11:82989368:C:T	rs3793985	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	83193237	83193238	chr11:83193238:G:A	chr11:83193238:G:A	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	83303588	83303589	chr11:83303589:C:T	rs629578	C	T	C	Hoxa9_MA0594.1	2	1	+	7.565650261440604	5.6453191783133825	GCCATAAAGCA
chr11	83544240	83544241	chr11:83544241:T:C	rs116983205	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	83564962	83564963	chr11:83564963:G:A	rs556199	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	83602089	83602090	chr11:83602090:T:C	rs611766	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	83722968	83722969	chr11:83722969:A:C	rs7948906	A	C	A	Hoxa9_MA0594.1	4	1	-	9.45271635848298	2.5439615791677612	GCCATAAATAA
chr11	83729547	83729548	chr11:83729548:T:G	rs11233734	T	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	83786184	83786185	chr11:83786185:T:C	rs12796763	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr11	83896749	83896750	chr11:83896750:T:C	rs708239	T	C	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	83917707	83917708	chr11:83917708:G:A	rs790363	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	84563341	84563342	chr11:84563342:G:T	rs948142	G	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	85675752	85675753	chr11:85675753:T:A	rs290182	T	A	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	85755824	85755825	chr11:85755825:G:A	rs17148431	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	85954128	85954129	chr11:85954129:T:C	rs1892943	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	86042308	86042309	chr11:86042309:C:T	rs17745248	C	T	c	Hoxa9_MA0594.1	0	1	-	9.037868572125442	8.17268305940289	GTAATAAATCT
chr11	86152430	86152431	chr11:86152431:G:A	rs34731047	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr11	86172260	86172261	chr11:86172261:C:T	rs7949297	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	86441038	86441039	chr11:86441039:G:A	rs116465009	G	A	G	Hoxa9_MA0594.1	9	1	-	8.68180464866152	6.057091430077281	ACCATTAATCA
chr11	86486836	86486837	chr11:86486837:G:A	rs11234666	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	86607420	86607421	chr11:86607421:C:T	rs567842127	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	86667010	86667011	chr11:86667011:G:A	rs622933	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	86891422	86891423	chr11:86891423:A:G	rs12225381	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	86891431	86891432	chr11:86891432:T:A	rs72959672	T	A	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr11	86917811	86917812	chr11:86917812:A:T	rs17758621	A	T	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr11	86995497	86995498	chr11:86995498:T:C	rs557466331	T	C	t	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	87017511	87017512	chr11:87017512:A:G	rs4245430	A	G	a	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	87063983	87063984	chr11:87063984:G:A	rs10898590	G	A	G	Hoxa9_MA0594.1	1	1	-	7.1129682170592226	6.221418455948828	CCCATAACTCA
chr11	87305231	87305232	chr11:87305232:A:T	rs75499880	A	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	87727071	87727072	chr11:87727072:T:A	rs73535520	T	A	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	87810722	87810723	chr11:87810723:C:T	rs1939206	C	T	C	Hoxa9_MA0594.1	0	1	+	9.736370122260793	7.191404777052525	CTCATAAATCT
chr11	87975958	87975959	chr11:87975959:T:C	rs34250015	T	C	T	Hoxa9_MA0594.1	8	1	+	8.510815797847973	1.6375277477480834	ACAATCAATCT
chr11	88168067	88168068	chr11:88168068:G:A	rs302650	G	A	A	Hoxa9_MA0594.1	1	1	-	6.982587615172259	6.091037854061864	GCCATCACTCA
chr11	88310555	88310556	chr11:88310556:T:C	rs588374	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	88620633	88620634	chr11:88620634:G:A	rs905646	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	88620723	88620724	chr11:88620724:A:G	rs12785879	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	89014992	89014993	chr11:89014993:T:A	rs72954981	T	A	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	90563176	90563177	chr11:90563177:G:A	rs10830539	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	90699668	90699669	chr11:90699669:G:T	rs1792609	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	90740760	90740761	chr11:90740761:A:G	rs17262804	A	G	A	Hoxa9_MA0594.1	4	1	-	8.66099466428206	1.7522398849668381	TTCATAAATCA
chr11	90908304	90908305	chr11:90908305:C:T	rs1917501	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	90917649	90917650	chr11:90917650:A:G	rs573329704	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	91081057	91081058	chr11:91081058:A:C	rs10501749	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	91150639	91150640	chr11:91150640:A:C	rs1852773	A	C	C	Hoxa9_MA0594.1	7	1	+	9.679444430235927	4.694902876694428	GCCATATATCA
chr11	91163673	91163674	chr11:91163674:A:G	rs138033327	A	G	A	Hoxa9_MA0594.1	2	1	-	10.1771786874735	12.097509770600722	CCTATAAATCA
chr11	91604297	91604298	chr11:91604298:A:C	rs2514307	A	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	91985116	91985117	chr11:91985117:A:G	rs17494494	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	92048645	92048646	chr11:92048646:T:C	rs12365264	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	92101757	92101758	chr11:92101758:A:G	rs16916990	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	92159847	92159848	chr11:92159848:C:A	rs35893693	C	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	92470161	92470162	chr11:92470162:A:C	rs115479958	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	92500422	92500423	chr11:92500423:C:A	rs648386	C	A	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	92627312	92627313	chr11:92627313:G:A	rs117498983	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	92739219	92739220	chr11:92739220:A:C	chr11:92739220:A:C	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	92747727	92747728	chr11:92747728:T:C	rs2634180	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	92794803	92794804	chr11:92794804:C:G	rs10501797	C	G	C	Hoxa9_MA0594.1	9	1	+	9.064232820513286	2.265901858812439	ACAATAAATCT
chr11	92803386	92803387	chr11:92803387:A:G	rs3912649	A	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	92862504	92862505	chr11:92862505:G:A	rs3912662	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	93020453	93020454	chr11:93020454:T:C	rs117841438	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	93032865	93032866	chr11:93032866:A:G	rs529123	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	93054434	93054435	chr11:93054435:G:A	rs11826071	G	A	A	Hoxa9_MA0594.1	1	1	-	8.01767889594621	7.126129134835814	ACAATGAATCA
chr11	93250072	93250073	chr11:93250073:C:T	rs76451710	C	T	c	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	93267707	93267708	chr11:93267708:C:A	rs116910554	C	A	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	93624715	93624716	chr11:93624716:T:G	rs12279634	T	G	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	93668241	93668242	chr11:93668242:C:G	rs7925086	C	G	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	93744966	93744967	chr11:93744967:T:G	rs11020505	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	94199791	94199792	chr11:94199792:T:G	rs1857680	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	94287146	94287147	chr11:94287147:A:C	rs12281327	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	94630553	94630554	chr11:94630554:C:T	rs628715	C	T	.	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	94648086	94648087	chr11:94648087:C:A	rs4567415	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr11	94657015	94657016	chr11:94657016:G:A	rs115902819	G	A	G	Hoxa9_MA0594.1	1	1	-	10.627919883371188	9.736370122260793	CCCATAAATCT
chr11	94673976	94673977	chr11:94673977:G:A	rs526060	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	95245323	95245324	chr11:95245324:G:A	rs114759418	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	95515338	95515339	chr11:95515339:T:C	rs16922043	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	95715762	95715763	chr11:95715763:G:A	rs1527449	G	A	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr11	95954744	95954745	chr11:95954745:T:A	rs11021358	T	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	95964055	95964056	chr11:95964056:A:G	rs7938725	A	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	96016227	96016228	chr11:96016228:C:G	rs559201881	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	96028981	96028982	chr11:96028982:G:A	rs10734173	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	96041664	96041665	chr11:96041665:T:C	rs16922920	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	96236907	96236908	chr11:96236908:G:C	rs77701658	G	C	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	96292945	96292946	chr11:96292946:G:T	rs11021520	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	96708676	96708677	chr11:96708677:C:T	rs11212819	C	T	.	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	96907369	96907370	chr11:96907370:T:C	rs2198343	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	97646247	97646248	chr11:97646248:T:C	rs11212078	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr11	97652592	97652593	chr11:97652593:T:C	rs658886	T	C	T	Hoxa9_MA0594.1	6	1	-	8.11177607157458	1.2941752858189222	CCCATGAATCT
chr11	97904786	97904787	chr11:97904787:G:T	rs10789741	G	T	G	Hoxa9_MA0594.1	0	1	-	9.02967993770463	8.58753084576043	CCCATAAATAA
chr11	98061463	98061464	chr11:98061464:A:G	rs11213844	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	98640249	98640250	chr11:98640250:A:C	rs2406348	A	C	A	Hoxa9_MA0594.1	9	1	-	8.00320666478695	3.8295889216703407	CCCATAAATTT
chr11	98721006	98721007	chr11:98721007:A:G	rs1835381	A	G	g	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	99098757	99098758	chr11:99098758:A:C	rs17565290	A	C	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	99183473	99183474	chr11:99183474:A:G	rs747451092	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr11	100005918	100005919	chr11:100005919:A:G	rs7113025	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	100190644	100190645	chr11:100190645:G:A	rs1002122	G	A	g	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	100328719	100328720	chr11:100328720:T:C	rs1442444	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	100445887	100445888	chr11:100445888:G:C	rs187064364	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	100685126	100685127	chr11:100685127:C:T	rs7938601	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	100769445	100769446	chr11:100769446:A:G	rs78598508	A	G	A	Hoxa9_MA0594.1	7	1	+	9.02967993770463	2.126746264001711	CCCATAAATAA
chr11	100855669	100855670	chr11:100855670:A:G	rs17095689	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	100906188	100906189	chr11:100906189:C:T	rs623600	C	T	C	Hoxa9_MA0594.1	1	1	-	8.34024025881841	9.196147443905666	GGAATAAATCA
chr11	100919041	100919042	chr11:100919042:A:C	rs1940220	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	100926161	100926162	chr11:100926162:G:C	rs79357798	G	C	G	Hoxa9_MA0594.1	2	1	-	10.317685414819367	3.793785427071027	GACATAAATCA
chr11	101178615	101178616	chr11:101178616:T:C	rs1942836	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr11	101718603	101718604	chr11:101718604:T:C	rs12286714	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	101866919	101866920	chr11:101866920:G:A	rs114353118	G	A	G	Hoxa9_MA0594.1	5	1	-	8.899299335817666	6.479160328487979	GCCATCAATAA
chr11	101880399	101880400	chr11:101880400:C:T	rs113315538	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	101880401	101880402	chr11:101880402:A:G	rs1441930	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr11	102295223	102295224	chr11:102295224:C:T	rs145407752	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	102391512	102391513	chr11:102391513:G:T	rs11827872	G	T	g	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	102477408	102477409	chr11:102477409:T:G	rs599384	T	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr11	102690956	102690957	chr11:102690957:G:A	rs10895348	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	102791177	102791178	chr11:102791178:T:C	rs657043	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	102883065	102883066	chr11:102883066:C:T	rs74741926	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	102883087	102883088	chr11:102883088:T:G	rs183444447	T	G	T	Hoxa9_MA0594.1	8	1	+	8.232403979495325	3.2775080495568565	CTCATTAATCA
chr11	102994271	102994272	chr11:102994272:T:C	rs10502011	T	C	t	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	103184549	103184550	chr11:103184550:A:T	rs17374401	A	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	103249698	103249699	chr11:103249699:C:T	rs11225628	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	103432553	103432554	chr11:103432554:C:T	rs505677	C	T	C	Hoxa9_MA0594.1	3	1	-	8.647200002859819	11.628996430268678	GTCGTAAATCA
chr11	103432557	103432558	chr11:103432558:C:T	rs505672	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	103525236	103525237	chr11:103525237:A:G	rs191098132	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	103652089	103652090	chr11:103652090:A:G	rs72978795	A	G	A	Hoxa9_MA0594.1	4	1	-	10.159406543039145	3.250651763723923	GTCATAAATCT
chr11	103683238	103683239	chr11:103683239:T:C	rs11225970	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	103755526	103755527	chr11:103755527:T:C	rs1842948	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	103870961	103870962	chr11:103870962:G:A	rs73600055	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	104148277	104148278	chr11:104148278:G:A	rs11821455	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	104232098	104232099	chr11:104232099:C:A	rs12789167	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	104232134	104232135	chr11:104232135:G:A	rs10791679	G	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	104694813	104694814	chr11:104694814:T:A	rs139993181	T	A	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	104701343	104701344	chr11:104701344:G:C	rs1944525	G	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	104934479	104934480	chr11:104934480:A:G	rs35733341	A	G	a	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	105023087	105023088	chr11:105023088:C:A	rs114585661	C	A	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	105073499	105073500	chr11:105073500:G:T	rs470237	G	T	.	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	105230776	105230777	chr11:105230777:T:C	rs17104030	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	105274222	105274223	chr11:105274223:T:C	rs7104574	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	105430091	105430092	chr11:105430092:A:T	rs7943561	A	T	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr11	105455879	105455880	chr11:105455880:C:T	rs61900581	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	105508037	105508038	chr11:105508038:T:C	rs72986164	T	C	T	Hoxa9_MA0594.1	4	1	+	12.520546191379072	5.611791412063853	GCCATAAATCA
chr11	106132175	106132176	chr11:106132176:T:G	rs1939815	T	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	106177887	106177888	chr11:106177888:A:G	rs7112436	A	G	A	Hoxa9_MA0594.1	8	1	-	9.764268392154055	2.890980342054165	GACATCAATCA
chr11	106425303	106425304	chr11:106425304:T:A	rs2458345	T	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	106462678	106462679	chr11:106462679:G:A	rs2511416	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	106749369	106749370	chr11:106749370:G:C	rs67981963	G	C	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	107051222	107051223	chr11:107051223:G:C	rs10789561	G	C	G	Hoxa9_MA0594.1	3	1	-	7.727146254177281	8.673564251247663	ACCCTAAATCA
chr11	107774735	107774736	chr11:107774736:A:G	rs12792230	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	107787326	107787327	chr11:107787327:T:C	rs2509485	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	107840739	107840740	chr11:107840740:C:G	rs12270291	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr11	107921448	107921449	chr11:107921449:A:T	rs190154679	A	T	A	Hoxa9_MA0594.1	0	1	+	9.294221030316594	7.191404777052525	ATCATAAATCT
chr11	108571242	108571243	chr11:108571243:G:C	rs73550537	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	108571255	108571256	chr11:108571256:A:C	rs17693972	A	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr11	108594071	108594072	chr11:108594072:C:G	rs11212727	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	108718651	108718652	chr11:108718652:G:A	rs11212763	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	108751666	108751667	chr11:108751667:G:A	rs1975910	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	108751695	108751696	chr11:108751696:C:T	rs1975911	C	T	C	Hoxa9_MA0594.1	0	1	-	7.618418680842992	6.753233168120441	GCTGTAAATCA
chr11	109236973	109236974	chr11:109236974:C:T	rs4753865	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	109383345	109383346	chr11:109383346:G:C	rs138439250	G	C	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	109993823	109993824	chr11:109993824:C:T	rs10891043	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	110031456	110031457	chr11:110031457:A:T	rs117376611	A	T	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	110187637	110187638	chr11:110187638:T:G	rs4754430	T	G	T	Hoxa9_MA0594.1	7	1	-	7.0122332387752895	2.027691685233791	GCCATCAAGCA
chr11	110425878	110425879	chr11:110425879:G:A	rs11213396	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	110425889	110425890	chr11:110425890:A:C	rs80171271	A	C	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	110506065	110506066	chr11:110506066:C:A	rs7942703	C	A	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	110763421	110763422	chr11:110763422:G:A	rs889889	G	A	A	Hoxa9_MA0594.1	0	1	+	7.992188342502578	7.127002829780027	GGCATAAATCT
chr11	110801123	110801124	chr11:110801124:G:A	rs226094	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	111004755	111004756	chr11:111004756:G:A	rs61900341	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	111106849	111106850	chr11:111106850:A:C	rs224770	A	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr11	111206316	111206317	chr11:111206317:G:A	rs7110958	G	A	A	Hoxa9_MA0594.1	9	1	-	9.642272946632424	7.017559728048186	ATAATAAATCA
chr11	111459994	111459995	chr11:111459995:A:G	rs73553252	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	111471922	111471923	chr11:111471923:C:T	rs140549524	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr11	111480458	111480459	chr11:111480459:T:C	rs1944117	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	111607995	111607996	chr11:111607996:A:T	rs12362685	A	T	A	Hoxa9_MA0594.1	1	1	-	11.628996430268678	10.317685414819367	GTCATAAATCA
chr11	111635349	111635350	chr11:111635350:A:C	rs1282996911	A	C	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	111715280	111715281	chr11:111715281:C:T	rs112249900	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	112177327	112177328	chr11:112177328:C:T	rs7121554	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	112199450	112199451	chr11:112199451:G:A	rs10891339	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr11	112221541	112221542	chr11:112221542:T:C	rs143934028	T	C	t	Hoxa9_MA0594.1	24	0	-	0	0	.
chr11	112315957	112315958	chr11:112315958:C:T	rs4394864	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	112365610	112365611	chr11:112365611:C:T	rs555375137	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	112576745	112576746	chr11:112576746:T:G	rs10082586	T	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	112677170	112677171	chr11:112677171:T:A	rs2125734	T	A	T	Hoxa9_MA0594.1	10	1	-	8.34024025881841	6.870650371588876	GGAATAAATCA
chr11	112932174	112932175	chr11:112932175:T:C	rs11214422	T	C	C	Hoxa9_MA0594.1	3	1	-	9.506381912457487	6.524585485048628	CCAATAAATCT
chr11	113663818	113663819	chr11:113663819:T:C	rs61905028	T	C	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	113731127	113731128	chr11:113731128:G:T	rs7927569	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	113774494	113774495	chr11:113774495:G:A	rs1000559	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	114094746	114094747	chr11:114094747:T:C	rs1791806	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr11	114094749	114094750	chr11:114094750:G:C	rs1784137	G	C	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	114142445	114142446	chr11:114142446:C:T	rs61004552	C	T	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	114142473	114142474	chr11:114142474:A:T	rs181548991	A	T	A	Hoxa9_MA0594.1	2	1	-	10.1771786874735	10.97597179968702	CCTATAAATCA
chr11	114168143	114168144	chr11:114168144:C:T	rs672849	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	114192338	114192339	chr11:114192339:C:T	rs591242	C	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	114217963	114217964	chr11:114217964:C:T	rs17116686	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	114651479	114651480	chr11:114651480:G:C	rs61906459	G	C	G	Hoxa9_MA0594.1	9	1	-	9.929418333235837	3.13108737153499	GCAATAAATCT
chr11	114846221	114846222	chr11:114846222:C:G	rs11606687	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	114931715	114931716	chr11:114931716:C:G	rs4936309	C	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr11	115377957	115377958	chr11:115377958:C:A	chr11:115377958:C:A	C	A	C	Hoxa9_MA0594.1	5	1	-	8.01767889594621	7.560266677747817	ACAATGAATCA
chr11	115525647	115525648	chr11:115525648:A:C	chr11:115525648:A:C	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	115528619	115528620	chr11:115528620:T:C	rs693245	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	115617021	115617022	chr11:115617022:C:T	rs2846895	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	115617024	115617025	chr11:115617025:A:G	rs924530539	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr11	115637722	115637723	chr11:115637723:G:A	rs73009613	G	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	115671024	115671025	chr11:115671025:T:C	rs1698200	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr11	115944707	115944708	chr11:115944708:T:C	rs138106378	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	116387844	116387845	chr11:116387845:T:A	rs142975267	T	A	t	Hoxa9_MA0594.1	6	1	-	9.895832972794834	7.0547312116516885	GCCATAAATTA
chr11	116506907	116506908	chr11:116506908:T:A	rs12421717	T	A	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	116529426	116529427	chr11:116529427:C:T	rs762438434	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	116566642	116566643	chr11:116566643:A:C	rs57192657	A	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	116635378	116635379	chr11:116635379:G:A	rs987046663	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	116702991	116702992	chr11:116702992:C:T	rs17119897	C	T	C	Hoxa9_MA0594.1	8	1	-	7.565650261440604	9.050786138279621	GCCATAAAGCA
chr11	116959544	116959545	chr11:116959545:T:C	rs7120963	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	117097551	117097552	chr11:117097552:C:T	rs61903426	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr11	117182716	117182717	chr11:117182717:C:A	rs2046150	C	A	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	117275232	117275233	chr11:117275233:T:C	rs493139	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	117478685	117478686	chr11:117478686:A:G	rs56057635	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr11	117512978	117512979	chr11:117512979:C:T	rs10892133	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	117530576	117530577	chr11:117530577:C:A	rs57434987	C	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr11	117539043	117539044	chr11:117539044:T:C	rs142414349	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	117719606	117719607	chr11:117719607:G:T	rs7106419	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	117744080	117744081	chr11:117744081:T:C	rs869005	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	117814504	117814505	chr11:117814505:G:C	rs10892177	G	C	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	117814989	117814990	chr11:117814990:C:T	rs2282503	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr11	117901513	117901514	chr11:117901514:G:C	rs575535	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr11	118047246	118047247	chr11:118047247:T:C	rs659092	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	118141594	118141595	chr11:118141595:G:A	rs11216781	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr11	118566368	118566369	chr11:118566369:A:C	rs112787374	A	C	A	Hoxa9_MA0594.1	5	1	+	8.774295001881132	8.220877979215818	GCAATAAATTA
chr11	118566378	118566379	chr11:118566379:T:C	rs115951984	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	118688468	118688469	chr11:118688469:T:C	rs486462	T	C	t	Hoxa9_MA0594.1	3	1	-	9.929418333235837	6.947621905826979	GCAATAAATCT
chr11	118891508	118891509	chr11:118891509:A:G	rs543824	A	G	A	Hoxa9_MA0594.1	3	1	+	8.952964889792172	5.9711684623833134	CCAATCAATCT
chr11	118928859	118928860	chr11:118928860:A:G	rs558451880	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr11	118928863	118928864	chr11:118928864:G:A	rs186549624	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	118928891	118928892	chr11:118928892:A:G	rs924381089	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	119424352	119424353	chr11:119424353:A:G	rs7130266	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	119906901	119906902	chr11:119906902:A:G	rs509809	A	G	A	Hoxa9_MA0594.1	3	1	+	7.929248167365919	4.94745173995706	GCAATAAAACA
chr11	119974736	119974737	chr11:119974737:G:A	rs80159023	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	119974744	119974745	chr11:119974745:A:G	rs11606412	A	G	A	Hoxa9_MA0594.1	3	1	+	8.425059106811483	5.443262679402625	CACATAAATCT
chr11	120004888	120004889	chr11:120004889:T:A	chr11:120004889:T:A	T	A	T	Hoxa9_MA0594.1	10	1	-	7.877589431813438	6.407999544583904	TCAATCAATCA
chr11	120004888	120004889	chr11:120004889:T:C	rs1944500	T	C	T	Hoxa9_MA0594.1	10	1	-	7.877589431813438	1.240816446060669	TCAATCAATCA
chr11	120023042	120023043	chr11:120023043:G:C	rs10502233	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	120097116	120097117	chr11:120097117:G:A	rs61897959	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr11	120218480	120218481	chr11:120218481:G:A	rs138738215	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr11	120779118	120779119	chr11:120779119:T:C	rs17124317	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	120938488	120938489	chr11:120938489:G:C	rs580711	G	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	121245928	121245929	chr11:121245929:A:G	rs7129292	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	121268856	121268857	chr11:121268857:T:C	rs10790426	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	121380158	121380159	chr11:121380159:A:C	rs7114953	A	C	A	Hoxa9_MA0594.1	3	1	+	7.185134028456644	3.256919603977403	CCAATCCATCA
chr11	121458670	121458671	chr11:121458671:C:T	rs79308088	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	121577628	121577629	chr11:121577629:G:A	rs3781836	G	A	g	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	121581941	121581942	chr11:121581942:T:A	rs11218350	T	A	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	121583439	121583440	chr11:121583440:C:G	rs73595277	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr11	121671889	121671890	chr11:121671890:C:T	rs79684433	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	121964855	121964856	chr11:121964856:A:G	chr11:121964856:A:G	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr11	122009075	122009076	chr11:122009076:C:T	rs67570480	C	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	122305797	122305798	chr11:122305798:C:T	rs4127498	C	T	C	Hoxa9_MA0594.1	0	1	+	8.169295346121482	5.624330000913213	CCCCTAAATCA
chr11	122305812	122305813	chr11:122305813:A:G	chr11:122305813:A:G	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	122442056	122442057	chr11:122442057:A:C	rs11218621	A	C	A	Hoxa9_MA0594.1	2	1	+	8.004489436656911	9.126027407570612	GCAATCTATCA
chr11	122785380	122785381	chr11:122785381:A:G	rs185018009	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	122793871	122793872	chr11:122793872:C:T	rs7931890	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	122862163	122862164	chr11:122862164:G:T	rs2177196	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	123134905	123134906	chr11:123134906:C:T	rs12287633	C	T	C	Hoxa9_MA0594.1	10	1	+	9.165841187632518	10.159406543039145	GTCATAAATCC
chr11	123173274	123173275	chr11:123173275:T:C	rs189783172	T	C	T	Hoxa9_MA0594.1	3	1	-	9.050786138279621	6.068989710870762	GCCATAAAACA
chr11	123221740	123221741	chr11:123221741:A:G	rs488943	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	123231523	123231524	chr11:123231524:T:G	rs73616405	T	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	123231557	123231558	chr11:123231558:T:G	rs116441589	T	G	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	123524747	123524748	chr11:123524748:G:C	rs4936821	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr11	123567409	123567410	chr11:123567410:A:C	rs850293	A	C	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr11	123693002	123693003	chr11:123693003:T:C	rs1074339	T	C	C	Hoxa9_MA0594.1	4	1	+	9.00428321168444	2.0955284323692185	GTCATAAATTA
chr11	123695888	123695889	chr11:123695889:C:G	rs11219240	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	123777886	123777887	chr11:123777887:C:T	rs7130648	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	123822595	123822596	chr11:123822596:A:G	rs144110860	A	G	A	Hoxa9_MA0594.1	10	1	+	10.317685414819367	3.6809124290665984	GACATAAATCA
chr11	123822602	123822603	chr11:123822603:G:A	rs78082664	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	123926306	123926307	chr11:123926307:A:T	rs12226080	A	T	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	124172938	124172939	chr11:124172939:T:A	rs2508880	T	A	A	Hoxa9_MA0594.1	3	1	-	7.854530172183207	1.0117935295755183	GACATAAATCC
chr11	124190854	124190855	chr11:124190855:T:G	rs10790639	T	G	t	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	124203159	124203160	chr11:124203160:A:G	rs10893160	A	G	a	Hoxa9_MA0594.1	7	1	+	10.845591197800056	3.942657524097136	GCAATCAATCA
chr11	124233638	124233639	chr11:124233639:A:G	rs2512197	A	G	a	Hoxa9_MA0594.1	27	0	-	0	0	.
chr11	124255941	124255942	chr11:124255942:C:T	rs2466720	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	124302668	124302669	chr11:124302669:C:T	rs10893205	C	T	.	Hoxa9_MA0594.1	16	0	+	0	0	.
chr11	124405417	124405418	chr11:124405418:C:G	rs561369	C	G	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr11	124405451	124405452	chr11:124405452:C:T	rs560678	C	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr11	124518540	124518541	chr11:124518541:G:A	rs10893239	G	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	124583596	124583597	chr11:124583597:A:T	rs10750286	A	T	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	124825919	124825920	chr11:124825920:C:T	rs573200	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	124889629	124889630	chr11:124889630:C:G	rs75210222	C	G	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	124900301	124900302	chr11:124900302:G:A	rs4406837	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	125190502	125190503	chr11:125190503:G:C	rs77928709	G	C	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr11	125260171	125260172	chr11:125260172:T:C	rs11219999	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr11	125308542	125308543	chr11:125308543:T:C	rs111710977	T	C	T	Hoxa9_MA0594.1	3	1	-	9.037868572125442	6.056072144716582	GTAATAAATCT
chr11	125389705	125389706	chr11:125389706:C:T	rs79181720	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	125542948	125542949	chr11:125542949:T:G	rs80057612	T	G	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr11	125594945	125594946	chr11:125594946:A:G	rs543389	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	125933266	125933267	chr11:125933267:C:T	rs76951331	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	125953856	125953857	chr11:125953857:G:A	rs581548	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr11	125999643	125999644	chr11:125999644:T:C	rs636368	T	C	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr11	126086430	126086431	chr11:126086431:C:T	rs11220344	C	T	C	Hoxa9_MA0594.1	1	1	+	11.544092747935409	10.652542986825011	CCCATCAATCA
chr11	126086440	126086441	chr11:126086441:A:C	rs4937086	A	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	126154139	126154140	chr11:126154140:C:A	rs502147	C	A	C	Hoxa9_MA0594.1	1	1	+	8.01767889594621	5.814818119386504	ACAATGAATCA
chr11	126154146	126154147	chr11:126154147:T:A	rs61898819	T	A	T	Hoxa9_MA0594.1	8	1	+	8.01767889594621	4.547918842846758	ACAATGAATCA
chr11	126521072	126521073	chr11:126521073:C:A	rs11605603	C	A	C	Hoxa9_MA0594.1	9	1	+	7.632183602891756	4.564353769995664	ACCATCAAACA
chr11	126521075	126521076	chr11:126521076:G:T	rs932783421	G	T	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	126605512	126605513	chr11:126605513:G:T	rs12807642	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	126620785	126620786	chr11:126620786:A:G	rs116843648	A	G	A	Hoxa9_MA0594.1	7	1	+	10.084422038576625	3.1814883648737045	CTAATAAATCA
chr11	126629434	126629435	chr11:126629435:A:C	rs531009	A	C	C	Hoxa9_MA0594.1	4	1	-	8.62774971750127	1.7189949381860505	CCCATAAAACA
chr11	126629457	126629458	chr11:126629458:C:A	rs113904001	C	A	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	126703880	126703881	chr11:126703881:T:C	rs147265788	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	126897902	126897903	chr11:126897903:C:T	rs7946318	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr11	127101430	127101431	chr11:127101431:A:C	rs12225946	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	127117602	127117603	chr11:127117603:C:T	rs12364670	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	127493754	127493755	chr11:127493755:G:C	rs1431577	G	C	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	127523521	127523522	chr11:127523522:T:C	rs28584579	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr11	127601505	127601506	chr11:127601506:A:G	rs12417805	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr11	127607907	127607908	chr11:127607908:C:T	rs7104007	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr11	127883141	127883142	chr11:127883142:C:T	rs71479968	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	127919008	127919009	chr11:127919009:G:A	rs4937276	G	A	g	Hoxa9_MA0594.1	11	0	-	0	0	.
chr11	128000812	128000813	chr11:128000813:C:T	rs148860979	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr11	128018805	128018806	chr11:128018806:G:A	rs7120186	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr11	128071255	128071256	chr11:128071256:G:A	rs11221146	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr11	128210629	128210630	chr11:128210630:A:G	rs78421285	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	128210665	128210666	chr11:128210666:G:A	rs747163	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr11	128210793	128210794	chr11:128210794:C:T	rs140281121	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr11	128212499	128212500	chr11:128212500:T:C	rs565457	T	C	T	Hoxa9_MA0594.1	7	1	-	7.877589431813438	0.9746557581105182	TCAATCAATCA
chr11	128335806	128335807	chr11:128335807:T:C	rs61907741	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr11	128379957	128379958	chr11:128379958:A:G	rs7123087	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr11	128408124	128408125	chr11:128408125:C:T	rs73581039	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	128507584	128507585	chr11:128507585:A:G	rs7118744	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	128745590	128745591	chr11:128745591:A:G	rs1238566	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr11	128790124	128790125	chr11:128790125:C:A	rs608764	C	A	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr11	128941990	128941991	chr11:128941991:C:A	rs10893936	C	A	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr11	128949998	128949999	chr11:128949999:C:T	rs2846687	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	129378020	129378021	chr11:129378021:A:T	rs1493544	A	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr11	129530245	129530246	chr11:129530246:C:A	rs112723189	C	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	129639482	129639483	chr11:129639483:G:A	rs147828238	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	129814870	129814871	chr11:129814871:A:G	rs138792582	A	G	G	Hoxa9_MA0594.1	4	1	-	9.341231971375704	2.4324771920604826	CACATCAATCA
chr11	130359358	130359359	chr11:130359359:C:T	rs11222067	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	130404883	130404884	chr11:130404884:C:T	rs76580375	C	T	c	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr11	130483566	130483567	chr11:130483567:G:A	rs7106030	G	A	A	Hoxa9_MA0594.1	2	1	-	8.425059106811483	6.504728023684261	CACATAAATCT
chr11	130641057	130641058	chr11:130641058:C:A	rs7103035	C	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr11	130890598	130890599	chr11:130890599:A:T	rs7937782	A	T	A	Hoxa9_MA0594.1	2	1	+	9.53100501591131	8.73221190369779	CTAATCAATCA
chr11	131001060	131001061	chr11:131001061:T:C	rs1433980	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr11	131235822	131235823	chr11:131235823:A:C	rs1894231	A	C	C	Hoxa9_MA0594.1	7	1	+	7.517250442441346	2.5327088888998466	ACAATCAATCC
chr11	131236405	131236406	chr11:131236406:T:G	rs1793568	T	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr11	131307583	131307584	chr11:131307584:A:G	rs113677680	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr11	131504375	131504376	chr11:131504376:A:C	rs1000909648	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	131506481	131506482	chr11:131506482:C:T	rs73026139	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr11	131639001	131639002	chr11:131639002:G:A	rs988264	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	131811609	131811610	chr11:131811610:T:G	chr11:131811610:T:G	T	G	T	Hoxa9_MA0594.1	6	1	-	9.764268392154055	6.526847643588992	GACATCAATCA
chr11	131811703	131811704	chr11:131811704:T:G	rs1527773	T	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr11	131902774	131902775	chr11:131902775:T:G	rs541507	T	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr11	131908464	131908465	chr11:131908465:C:A	rs522856	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr11	132802395	132802396	chr11:132802396:G:T	rs4937722	G	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	133031304	133031305	chr11:133031305:T:C	rs117541425	T	C	T	Hoxa9_MA0594.1	7	1	-	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr11	133173982	133173983	chr11:133173983:G:A	rs112590453	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr11	133173999	133174000	chr11:133174000:G:A	rs520024	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr11	133241511	133241512	chr11:133241512:C:T	rs116723932	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr11	133509150	133509151	chr11:133509151:C:T	rs117070048	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	133836800	133836801	chr11:133836801:G:A	rs2723613	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr11	133892871	133892872	chr11:133892872:G:A	rs484210	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	133917049	133917050	chr11:133917050:A:C	rs3802922	A	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr11	133966709	133966710	chr11:133966710:T:A	rs329683	T	A	A	Hoxa9_MA0594.1	7	1	-	12.097509770600722	5.194576096897802	CCCATAAATCA
chr11	134124380	134124381	chr11:134124381:G:A	rs470952	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr11	134126320	134126321	chr11:134126321:G:T	rs567939066	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr11	134126354	134126355	chr11:134126355:C:T	rs141425732	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	134126356	134126357	chr11:134126357:C:G	rs73600728	C	G	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr11	134252401	134252402	chr11:134252402:A:C	rs12278812	A	C	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	134332697	134332698	chr11:134332698:G:A	rs370351769	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr11	134404781	134404782	chr11:134404782:A:G	rs1866769	A	G	A	Hoxa9_MA0594.1	10	1	-	8.425059106811483	7.431493751404856	CACATAAATCT
chr11	134439260	134439261	chr11:134439261:T:C	rs4643092	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr11	134439309	134439310	chr11:134439310:A:G	rs4606493	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr11	134525409	134525410	chr11:134525410:A:T	rs112625207	A	T	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr11	134537976	134537977	chr11:134537977:G:A	rs114963768	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	134578575	134578576	chr11:134578576:C:T	rs10894845	C	T	c	Hoxa9_MA0594.1	23	0	+	0	0	.
chr11	134595849	134595850	chr11:134595850:C:T	rs4937920	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr11	134608865	134608866	chr11:134608866:C:T	rs67343751	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr11	134654632	134654633	chr11:134654633:G:A	rs75091985	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr11	134699581	134699582	chr11:134699582:G:A	rs567461595	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr11	134743267	134743268	chr11:134743268:C:T	chr11:134743268:C:T	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr11	134743276	134743277	chr11:134743277:C:T	rs7934611	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr11	134844560	134844561	chr11:134844561:G:A	rs117230929	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr11	134987394	134987395	chr11:134987395:A:C	rs3862650	A	C	.	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	112172	112173	chr12:112173:A:G	rs76444570	A	G	.	Hoxa9_MA0594.1	4	1	-	11.628996430268678	4.720241650953457	GTCATAAATCA
chr12	226755	226756	chr12:226756:C:A	rs555044	C	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr12	293480	293481	chr12:293481:A:G	rs57022939	A	G	a	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	576396	576397	chr12:576397:G:A	rs772250298	G	A	G	Hoxa9_MA0594.1	0	1	+	9.895832972794834	9.030647460072283	GCCATAAATTA
chr12	731569	731570	chr12:731570:A:G	rs10744725	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr12	789233	789234	chr12:789234:C:A	rs724709	C	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	949766	949767	chr12:949767:A:T	rs1274468239	A	T	-	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	949796	949797	chr12:949797:G:A	chr12:949797:G:A	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	1096535	1096536	chr12:1096536:A:G	rs10505721	A	G	G	Hoxa9_MA0594.1	6	1	+	7.440758349612847	0.6231575638571907	CCAGTCAATCA
chr12	1096538	1096539	chr12:1096539:C:G	rs75753958	C	G	C	Hoxa9_MA0594.1	9	1	+	7.440758349612847	0.6424273879120002	CCAGTCAATCA
chr12	1332484	1332485	chr12:1332485:T:C	rs73036673	T	C	T	Hoxa9_MA0594.1	3	1	-	8.510815797847973	5.529019370439113	ACAATCAATCT
chr12	1350562	1350563	chr12:1350563:A:T	chr12:1350563:A:T	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	1350578	1350579	chr12:1350579:G:A	rs12423105	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	1491811	1491812	chr12:1491812:A:T	rs1064125	A	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr12	1491857	1491858	chr12:1491858:A:G	rs4766374	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	1573010	1573011	chr12:1573011:C:T	rs10773961	C	T	T	Hoxa9_MA0594.1	2	1	+	8.069159876740681	6.1488287936134585	GCCGTAAATCT
chr12	1629785	1629786	chr12:1629786:G:A	rs570677502	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr12	1629804	1629805	chr12:1629805:G:C	rs375286028	G	C	G	Hoxa9_MA0594.1	1	1	-	9.634354527964561	6.5755865663176	CCCATAAATCC
chr12	2018084	2018085	chr12:2018085:C:T	rs113503723	C	T	C	Hoxa9_MA0594.1	1	1	+	10.53382270774282	9.642272946632424	ACAATAAATCA
chr12	2018086	2018087	chr12:2018087:A:G	rs2429136	A	G	A	Hoxa9_MA0594.1	3	1	+	10.53382270774282	7.552026280333961	ACAATAAATCA
chr12	2027535	2027536	chr12:2027536:C:T	rs2470418	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	2043233	2043234	chr12:2043234:G:C	rs79776888	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	2047737	2047738	chr12:2047738:T:C	rs7138372	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	2096272	2096273	chr12:2096273:T:C	rs11062122	T	C	T	Hoxa9_MA0594.1	3	1	-	8.773111023127315	5.791314595718456	CAAATAAATCA
chr12	2117532	2117533	chr12:2117533:A:C	rs10848617	A	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	2213757	2213758	chr12:2213758:G:A	rs77810332	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr12	2302031	2302032	chr12:2302032:C:A	rs16929233	C	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	2307513	2307514	chr12:2307514:T:C	rs117639423	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr12	2324732	2324733	chr12:2324733:T:C	rs2239045	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	2365494	2365495	chr12:2365495:C:T	rs12425203	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	2397548	2397549	chr12:2397549:A:G	rs140811693	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	2645364	2645365	chr12:2645365:A:G	rs117660151	A	G	A	Hoxa9_MA0594.1	4	1	-	8.077400274154538	1.1686454948393166	GCCATTAATCT
chr12	2668601	2668602	chr12:2668602:A:G	rs6489375	A	G	-	Hoxa9_MA0594.1	3	1	+	10.422554777021706	7.440758349612847	CCAATCAATCA
chr12	2886021	2886022	chr12:2886022:G:C	rs10735010	G	C	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	3146160	3146161	chr12:3146161:G:A	rs10848813	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	3146195	3146196	chr12:3146196:A:G	rs7133793	A	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	3151574	3151575	chr12:3151575:G:T	rs75707558	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	3223118	3223119	chr12:3223119:T:C	rs41423644	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	3273396	3273397	chr12:3273397:C:T	rs479105	C	T	C	Hoxa9_MA0594.1	2	1	+	8.908361207066799	6.988030123939574	GGCATCAATCA
chr12	3541276	3541277	chr12:3541277:C:T	rs11062713	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	3725307	3725308	chr12:3725308:G:A	rs241979	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	3947529	3947530	chr12:3947530:T:C	rs6489506	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	3962071	3962072	chr12:3962072:G:A	rs622513	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr12	3962102	3962103	chr12:3962103:T:C	rs2532524	T	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	4320481	4320482	chr12:4320482:C:T	rs73042190	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	4569047	4569048	chr12:4569048:A:C	rs11063234	A	C	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	4597564	4597565	chr12:4597565:C:A	rs12317865	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	4626919	4626920	chr12:4626920:A:G	rs1990313	A	G	A	Hoxa9_MA0594.1	7	1	+	7.656437520341079	0.753503846638159	GCCATCTATCT
chr12	4821193	4821194	chr12:4821194:G:A	rs12423234	G	A	a	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	5085581	5085582	chr12:5085582:C:T	rs1842192	C	T	C	Hoxa9_MA0594.1	1	1	+	7.541247136946303	6.649697375835908	GCCATGAATCC
chr12	5208683	5208684	chr12:5208684:T:C	rs181288	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	5216378	5216379	chr12:5216379:A:T	rs73037668	A	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	5263039	5263040	chr12:5263040:A:G	rs12308805	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	5317821	5317822	chr12:5317822:A:G	rs75837397	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	5378084	5378085	chr12:5378085:C:T	rs145261109	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr12	5378279	5378280	chr12:5378280:G:A	rs113083952	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	5571310	5571311	chr12:5571311:G:A	rs3782583	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	5662554	5662555	chr12:5662555:T:C	rs759518	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr12	5665353	5665354	chr12:5665354:C:T	rs251777	C	T	T	Hoxa9_MA0594.1	6	1	+	7.260118532919163	7.656437520341079	GCCATCCATCT
chr12	5976346	5976347	chr12:5976347:A:G	rs216855	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	6021043	6021044	chr12:6021044:A:G	rs73261078	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	6143041	6143042	chr12:6143042:T:G	rs2159369	T	G	-	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	6143046	6143047	chr12:6143047:T:G	rs2159368	T	G	-	Hoxa9_MA0594.1	4	1	+	9.929418333235837	3.0206635539206164	GCAATAAATCT
chr12	6436827	6436828	chr12:6436828:A:C	rs12817967	A	C	C	Hoxa9_MA0594.1	3	1	+	10.1771786874735	6.248964262994259	CCTATAAATCA
chr12	7219790	7219791	chr12:7219791:T:C	rs143009735	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	7272200	7272201	chr12:7272201:T:A	rs73057707	T	A	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	7485878	7485879	chr12:7485879:A:C	rs78288163	A	C	.	Hoxa9_MA0594.1	2	1	+	8.34024025881841	9.461778229732111	GGAATAAATCA
chr12	7527527	7527528	chr12:7527528:G:A	rs57750193	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	7658497	7658498	chr12:7658498:A:G	rs1292498337	A	G	a	Hoxa9_MA0594.1	8	1	-	12.520546191379072	5.647258141279183	GCCATAAATCA
chr12	7686007	7686008	chr12:7686008:C:T	rs12310721	C	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	7731253	7731254	chr12:7731254:G:A	rs113542900	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr12	8146415	8146416	chr12:8146416:C:T	rs73246126	C	T	.	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	8561061	8561062	chr12:8561062:C:T	rs117476503	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr12	8566039	8566040	chr12:8566040:C:T	rs67713021	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	8610408	8610409	chr12:8610409:G:A	rs1561559	G	A	A	Hoxa9_MA0594.1	1	1	-	9.929418333235837	9.037868572125442	GCAATAAATCT
chr12	8697479	8697480	chr12:8697480:T:A	rs562811686	T	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr12	9189332	9189333	chr12:9189333:T:G	rs6487662	T	G	G	Hoxa9_MA0594.1	4	1	+	8.58753084576043	1.6787760664452103	ACCATAAATAA
chr12	9326361	9326362	chr12:9326362:G:T	rs4316551	G	T	g	Hoxa9_MA0594.1	1	1	-	8.00320666478695	5.800345888227245	CCCATAAATTT
chr12	9364767	9364768	chr12:9364768:G:A	rs12366431	G	A	g	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	9615952	9615953	chr12:9615953:A:T	rs58158418	A	T	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	9902611	9902612	chr12:9902612:T:C	rs7304779	T	C	t	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	9969604	9969605	chr12:9969605:G:A	rs560906	G	A	-	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	10101643	10101644	chr12:10101644:C:T	rs11053585	C	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	10153691	10153692	chr12:10153692:T:C	rs11053642	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	10320918	10320919	chr12:10320919:T:C	rs11053744	T	C	T	Hoxa9_MA0594.1	5	1	-	8.425059106811483	5.908915295014873	CACATAAATCT
chr12	10785525	10785526	chr12:10785526:G:A	rs61912216	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	11486128	11486129	chr12:11486129:A:G	rs2965704	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr12	11506787	11506788	chr12:11506788:T:G	rs17209715	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr12	11513455	11513456	chr12:11513456:C:T	rs77645215	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	11628940	11628941	chr12:11628941:G:C	rs138987986	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	11677583	11677584	chr12:11677584:G:C	rs2724625	G	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	11746023	11746024	chr12:11746024:G:A	rs11615175	G	A	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	11752625	11752626	chr12:11752626:C:T	rs200112014	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr12	11880936	11880937	chr12:11880937:C:T	rs4763731	C	T	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	12003387	12003388	chr12:12003388:A:C	rs7305426	A	C	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	12010748	12010749	chr12:12010749:C:G	rs3903005	C	G	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	12011747	12011748	chr12:12011748:G:A	rs7300879	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	12011756	12011757	chr12:12011757:G:C	rs78270685	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	12128704	12128705	chr12:12128705:A:T	rs74443077	A	T	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	12563691	12563692	chr12:12563692:T:C	chr12:12563692:T:C	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	12645403	12645404	chr12:12645404:T:C	rs34051318	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	12683866	12683867	chr12:12683867:C:T	rs12582358	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	12791807	12791808	chr12:12791808:C:T	rs34810457	C	T	C	Hoxa9_MA0594.1	2	1	+	7.64612345596233	5.725792372835108	CCCGTAAATCT
chr12	12916256	12916257	chr12:12916257:C:T	rs778487892	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr12	13369658	13369659	chr12:13369659:C:T	rs2060300	C	T	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	13595818	13595819	chr12:13595819:G:C	rs182073569	G	C	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	13857874	13857875	chr12:13857875:C:T	rs77060042	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	13892783	13892784	chr12:13892784:G:A	rs10845858	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	13911526	13911527	chr12:13911527:C:T	rs4764039	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr12	13982340	13982341	chr12:13982341:T:A	rs1024893	T	A	T	Hoxa9_MA0594.1	8	1	+	9.552544425392455	6.082784372293002	TCCATAAATCA
chr12	14073255	14073256	chr12:14073256:G:A	rs73055516	G	A	A	Hoxa9_MA0594.1	1	1	-	11.050956304149539	10.159406543039145	GCCATAAATCT
chr12	14240167	14240168	chr12:14240168:G:A	rs6488666	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	14257550	14257551	chr12:14257551:T:C	rs17221259	T	C	T	Hoxa9_MA0594.1	3	1	-	7.1426138406622535	4.160817413253396	CCCATAAAGCA
chr12	14257567	14257568	chr12:14257568:G:A	rs75948757	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	14367766	14367767	chr12:14367767:A:G	rs12228415	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	14622279	14622280	chr12:14622280:T:C	rs2287538	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	14884423	14884424	chr12:14884424:T:A	rs111745427	T	A	T	Hoxa9_MA0594.1	7	1	-	8.742804766854166	1.839871093151246	CTCATAAATCC
chr12	14884436	14884437	chr12:14884437:T:G	rs569038402	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	14886231	14886232	chr12:14886232:G:T	rs781414171	G	T	G	Hoxa9_MA0594.1	9	1	-	10.652542986825011	7.58471315392892	CTCATCAATCA
chr12	14886360	14886361	chr12:14886361:G:A	rs1800799	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr12	14889003	14889004	chr12:14889004:T:G	rs2430740	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr12	14999212	14999213	chr12:14999213:G:T	rs12231027	G	T	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr12	15117230	15117231	chr12:15117231:C:G	rs11056358	C	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	15179407	15179408	chr12:15179408:G:C	rs2193172	G	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	15179418	15179419	chr12:15179419:C:T	rs759529	C	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	15672966	15672967	chr12:15672967:T:C	rs7486849	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	15708036	15708037	chr12:15708037:G:C	rs10505786	G	C	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	15983017	15983018	chr12:15983018:G:C	rs1868805	G	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	16026982	16026983	chr12:16026983:G:A	rs10846269	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	16063002	16063003	chr12:16063003:A:G	rs55736488	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr12	16071895	16071896	chr12:16071896:T:A	rs1901234	T	A	T	Hoxa9_MA0594.1	7	1	-	7.994175372278161	1.0912416985752418	CCAGTAAATCA
chr12	16071910	16071911	chr12:16071911:G:A	rs2417527	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	17253861	17253862	chr12:17253862:A:G	rs2942582	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	17372567	17372568	chr12:17372568:A:T	rs61923312	A	T	A	Hoxa9_MA0594.1	10	1	+	9.256408009457576	7.786818122228043	CCCATATATCA
chr12	18976142	18976143	chr12:18976143:C:T	rs73337133	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	19191992	19191993	chr12:19191993:G:T	rs12818330	G	T	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	19235100	19235101	chr12:19235101:G:A	rs57986592	G	A	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	19516395	19516396	chr12:19516396:A:G	rs7971147	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	19516396	19516397	chr12:19516397:G:T	rs7971443	G	T	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	19529859	19529860	chr12:19529860:C:T	rs10770500	C	T	c	Hoxa9_MA0594.1	0	1	-	8.729708420148697	7.864522907426146	GCCATCCATCA
chr12	19545504	19545505	chr12:19545505:G:A	rs12424628	G	A	g	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	19553729	19553730	chr12:19553730:T:C	rs10841260	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	19648657	19648658	chr12:19648658:G:T	rs73078957	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	19648660	19648661	chr12:19648661:G:T	rs6486986	G	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	19683199	19683200	chr12:19683200:A:G	rs4424735	A	G	A	Hoxa9_MA0594.1	7	1	+	9.130625221022317	2.2276915473193966	GCTATAAATCT
chr12	19780457	19780458	chr12:19780458:G:A	rs58255514	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	19823672	19823673	chr12:19823673:T:C	rs2638419	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	19855929	19855930	chr12:19855930:A:G	rs59219862	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	19909489	19909490	chr12:19909490:G:A	rs2049613	G	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	19909521	19909522	chr12:19909522:A:G	rs1826362	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	20018538	20018539	chr12:20018539:A:C	rs16922512	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	20141037	20141038	chr12:20141038:C:T	rs7967482	C	T	T	Hoxa9_MA0594.1	0	1	+	11.205960009490326	8.66099466428206	CTCATAAATCA
chr12	20183217	20183218	chr12:20183218:C:T	rs16922722	C	T	C	Hoxa9_MA0594.1	9	1	+	8.077400274154538	5.452687055570299	GCCATTAATCT
chr12	20289713	20289714	chr12:20289714:T:C	rs77800433	T	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	20420301	20420302	chr12:20420302:G:A	rs10841515	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	20439333	20439334	chr12:20439334:G:A	rs73239573	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	20663195	20663196	chr12:20663196:A:C	rs10083050	A	C	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr12	20750535	20750536	chr12:20750536:T:G	rs972506	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr12	21444311	21444312	chr12:21444312:A:G	rs714356	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	21497921	21497922	chr12:21497922:C:T	rs12829302	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	21656872	21656873	chr12:21656873:C:T	rs1677074	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	21666955	21666956	chr12:21666956:C:T	rs74069344	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	21719477	21719478	chr12:21719478:A:G	rs74067649	A	G	A	Hoxa9_MA0594.1	10	1	+	9.895832972794834	3.2590599870420647	GCCATAAATTA
chr12	22019124	22019125	chr12:22019125:A:G	rs116566812	A	G	A	Hoxa9_MA0594.1	10	1	+	8.899082879431504	2.262309893678734	AACATCAATCA
chr12	22068774	22068775	chr12:22068775:T:C	rs10841933	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	22214681	22214682	chr12:22214682:A:C	rs35335972	A	C	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr12	22245845	22245846	chr12:22245846:C:T	rs116948826	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	22275901	22275902	chr12:22275902:A:G	rs59820150	A	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	22275918	22275919	chr12:22275919:C:T	rs61921859	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	22409631	22409632	chr12:22409632:A:G	rs73074692	A	G	A	Hoxa9_MA0594.1	3	1	+	10.53382270774282	7.552026280333961	ACAATAAATCA
chr12	22529746	22529747	chr12:22529747:G:T	rs7303512	G	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	22739230	22739231	chr12:22739231:C:T	rs12230780	C	T	C	Hoxa9_MA0594.1	1	1	-	8.34024025881841	9.196147443905666	GGAATAAATCA
chr12	23120059	23120060	chr12:23120060:T:C	rs1406772	T	C	T	Hoxa9_MA0594.1	4	1	+	8.773111023127315	1.8643562438120942	CAAATAAATCA
chr12	23212759	23212760	chr12:23212760:T:C	rs1379480	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	23222160	23222161	chr12:23222161:C:A	rs17365263	C	A	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	23618000	23618001	chr12:23618001:T:C	rs7963001	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	23770685	23770686	chr12:23770686:C:T	rs4293213	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	24070288	24070289	chr12:24070289:A:T	chr12:24070289:A:T	A	T	A	Hoxa9_MA0594.1	10	1	+	8.34024025881841	6.870650371588876	GGAATAAATCA
chr12	24359356	24359357	chr12:24359357:C:T	rs140352480	C	T	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	24425233	24425234	chr12:24425234:A:G	rs56831089	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	24564487	24564488	chr12:24564488:G:A	rs6487396	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	24609226	24609227	chr12:24609227:G:C	rs7137330	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	24839834	24839835	chr12:24839835:T:C	rs12310217	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	24900549	24900550	chr12:24900550:T:C	rs55855818	T	C	t	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	25135995	25135996	chr12:25135996:C:A	rs11047855	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	25159104	25159105	chr12:25159105:T:C	rs11047868	T	C	T	Hoxa9_MA0594.1	4	1	+	8.843479834418904	1.934725055103683	ATTATAAATCA
chr12	25370265	25370266	chr12:25370266:A:C	rs10842544	A	C	A	Hoxa9_MA0594.1	2	1	+	9.929418333235837	11.050956304149539	GCAATAAATCT
chr12	25435926	25435927	chr12:25435927:C:A	rs1873240	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	25687434	25687435	chr12:25687435:T:C	rs6487508	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	25830330	25830331	chr12:25830331:G:A	rs7955324	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	25897247	25897248	chr12:25897248:C:T	rs1177523	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	25996580	25996581	chr12:25996581:A:T	rs1994996	A	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	26058738	26058739	chr12:26058739:T:G	rs7139241	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr12	26153861	26153862	chr12:26153862:C:G	rs4963962	C	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr12	26286368	26286369	chr12:26286369:G:A	rs7954146	G	A	G	Hoxa9_MA0594.1	1	1	-	7.66103487567689	6.769485114566494	CCTATGAATCA
chr12	26287937	26287938	chr12:26287938:G:A	rs561034332	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	26443410	26443411	chr12:26443411:A:G	rs3759116	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	26594326	26594327	chr12:26594327:G:A	rs9668898	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	26623291	26623292	chr12:26623292:G:A	rs11048622	G	A	G	Hoxa9_MA0594.1	5	1	+	7.801541603022757	10.317685414819367	GACATGAATCA
chr12	26702022	26702023	chr12:26702023:T:A	rs10743592	T	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	26724325	26724326	chr12:26724326:A:G	rs12582913	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	26851721	26851722	chr12:26851722:T:C	rs113203278	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	26939606	26939607	chr12:26939607:A:G	rs574388061	A	G	A	Hoxa9_MA0594.1	3	1	+	8.66099466428206	5.6791982368732	TTCATAAATCA
chr12	27311590	27311591	chr12:27311591:A:C	rs12581569	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	27324772	27324773	chr12:27324773:C:T	rs189589246	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr12	27330092	27330093	chr12:27330093:C:T	rs10842906	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	27607905	27607906	chr12:27607906:A:G	rs11049065	A	G	A	Hoxa9_MA0594.1	0	1	+	9.7350295955293	10.60021510825185	ACTATAAATCA
chr12	27619566	27619567	chr12:27619567:T:C	rs114026881	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	27866090	27866091	chr12:27866091:G:A	rs79881709	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	28033274	28033275	chr12:28033275:T:C	rs10771400	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	28066400	28066401	chr12:28066401:C:T	rs229987	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	28072303	28072304	chr12:28072304:A:C	rs565434926	A	C	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	28104607	28104608	chr12:28104608:G:A	rs78175654	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	28456073	28456074	chr12:28456074:G:A	rs11049621	G	A	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	28558849	28558850	chr12:28558850:G:C	rs7296538	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	28578967	28578968	chr12:28578968:A:G	rs1511549	A	G	G	Hoxa9_MA0594.1	2	1	+	8.88286440866876	3.480502391834123	GCAATGAATCA
chr12	28604011	28604012	chr12:28604012:A:C	rs10843218	A	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	28887843	28887844	chr12:28887844:T:C	rs1480629	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr12	28893172	28893173	chr12:28893173:T:G	rs10843270	T	G	G	Hoxa9_MA0594.1	5	1	-	10.507458459354975	9.95404143668966	GTAATAAATCA
chr12	29036403	29036404	chr12:29036404:G:A	rs6487749	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	29223452	29223453	chr12:29223453:C:A	rs889927	C	A	C	Hoxa9_MA0594.1	2	1	+	8.007749574707272	6.886211603793569	GTCATCAATAA
chr12	29299479	29299480	chr12:29299480:T:C	rs6487802	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	29385627	29385628	chr12:29385628:C:T	rs10771521	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr12	29516834	29516835	chr12:29516835:T:C	rs11050264	T	C	T	Hoxa9_MA0594.1	3	1	-	11.39900822046537	8.417211793056513	GCAATAAATCA
chr12	29527940	29527941	chr12:29527941:G:A	rs60743264	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	29609627	29609628	chr12:29609628:G:A	rs2766605	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr12	29614901	29614902	chr12:29614902:A:G	rs12819780	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	29672683	29672684	chr12:29672684:A:G	rs11050361	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	29960149	29960150	chr12:29960150:T:C	rs11050585	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	29961411	29961412	chr12:29961412:C:T	rs7954597	C	T	C	Hoxa9_MA0594.1	9	1	+	9.139216866859913	6.5145036482756735	ACCATGAATCA
chr12	30015900	30015901	chr12:30015901:T:C	rs12819535	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	30184856	30184857	chr12:30184857:C:T	rs4459396	C	T	T	Hoxa9_MA0594.1	3	1	-	8.120147228582349	11.101943655991207	ACCGTCAATCA
chr12	30184871	30184872	chr12:30184872:C:T	rs12814977	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	30192045	30192046	chr12:30192046:G:C	rs12228632	G	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	30236045	30236046	chr12:30236046:G:A	rs10400585	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	30358085	30358086	chr12:30358086:C:G	rs75837587	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	30418189	30418190	chr12:30418190:C:A	rs885106	C	A	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr12	30451016	30451017	chr12:30451017:A:G	rs77970469	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr12	30687404	30687405	chr12:30687405:C:A	rs17560465	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	30754144	30754145	chr12:30754145:C:A	chr12:30754145:C:A	C	A	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr12	30805044	30805045	chr12:30805045:T:C	rs6487941	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	30899075	30899076	chr12:30899076:A:G	rs79425801	A	G	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	30939439	30939440	chr12:30939440:T:C	rs2241325	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr12	31005196	31005197	chr12:31005197:A:C	rs12809555	A	C	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	31216455	31216456	chr12:31216456:A:T	rs7975008	A	T	.	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	31224154	31224155	chr12:31224155:G:T	rs4931458	G	T	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr12	31224198	31224199	chr12:31224199:A:G	rs4930963	A	G	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr12	31315288	31315289	chr12:31315289:G:C	rs80016114	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	31474649	31474650	chr12:31474650:C:T	rs1012154	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	31522202	31522203	chr12:31522203:T:C	rs139854995	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	31595045	31595046	chr12:31595046:T:C	rs78495432	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	31804909	31804910	chr12:31804910:C:T	rs4931560	C	T	c	Hoxa9_MA0594.1	18	0	-	0	0	.
chr12	31808606	31808607	chr12:31808607:C:T	rs7298443	C	T	C	Hoxa9_MA0594.1	0	1	-	11.075579407603364	10.210393894880813	GTCATCAATCA
chr12	31856687	31856688	chr12:31856688:T:G	rs11051630	T	G	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	32218202	32218203	chr12:32218203:G:C	rs73078228	G	C	G	Hoxa9_MA0594.1	9	1	-	9.294221030316594	2.4958900686157466	ATCATAAATCT
chr12	32244580	32244581	chr12:32244581:A:G	rs10844159	A	G	A	Hoxa9_MA0594.1	3	1	+	8.082954538162921	5.101158110754062	TCCATAAATCT
chr12	32366271	32366272	chr12:32366272:G:C	rs113726585	G	C	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	32390551	32390552	chr12:32390552:T:C	rs73296057	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	32543075	32543076	chr12:32543076:A:G	rs7305459	A	G	G	Hoxa9_MA0594.1	0	1	+	8.673564251247663	9.538749763970214	ACCGTAAATCA
chr12	32562367	32562368	chr12:32562368:T:G	rs79973043	T	G	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	32873909	32873910	chr12:32873910:T:C	rs60549952	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	33729729	33729730	chr12:33729730:G:A	rs2171289	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	34597197	34597198	chr12:34597198:C:T	rs74072726	C	T	.	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	34598096	34598097	chr12:34598097:G:C	rs11832570	G	C	.	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	34607865	34607866	chr12:34607866:G:T	rs59819642	G	T	.	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	38197042	38197043	chr12:38197043:G:T	rs112018549	G	T	g	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	38442995	38442996	chr12:38442996:C:T	rs191044778	C	T	A	Hoxa9_MA0594.1	5	1	+	9.376001310570523	6.955862303240835	GCAATCAATCT
chr12	38890353	38890354	chr12:38890354:C:G	rs60605001	C	G	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	39419680	39419681	chr12:39419681:G:A	rs76259401	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	39443164	39443165	chr12:39443165:T:C	rs532130145	T	C	T	Hoxa9_MA0594.1	10	1	-	7.022605952173604	0.38583296642083553	GCCGTGAATCA
chr12	39443177	39443178	chr12:39443178:G:C	rs186718931	G	C	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	39830500	39830501	chr12:39830501:A:G	rs7962260	A	G	G	Hoxa9_MA0594.1	3	1	+	10.074502860705875	7.092706433297016	CCCATCAATCT
chr12	39891739	39891740	chr12:39891740:G:C	rs10877733	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	39912940	39912941	chr12:39912941:C:T	rs12813530	C	T	C	Hoxa9_MA0594.1	0	1	-	11.050956304149539	10.185770791426988	GCCATAAATCT
chr12	39940064	39940065	chr12:39940065:C:G	rs77222415	C	G	C	Hoxa9_MA0594.1	10	1	+	10.057390948742912	5.883773205626303	GCCATAAATCC
chr12	39972384	39972385	chr12:39972385:A:G	rs73280629	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	40210265	40210266	chr12:40210266:A:G	rs2638229	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	40210272	40210273	chr12:40210273:T:G	rs2638230	T	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr12	40238296	40238297	chr12:40238297:T:G	rs10878246	T	G	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	40238297	40238298	chr12:40238298:C:T	rs10878247	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	40293232	40293233	chr12:40293233:C:T	rs11175913	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr12	40515119	40515120	chr12:40515120:T:A	rs11176994	T	A	.	Hoxa9_MA0594.1	6	1	-	8.027829768240773	5.186728007097628	CTCATCAATTA
chr12	40515400	40515401	chr12:40515401:G:A	rs73114279	G	A	.	Hoxa9_MA0594.1	2	1	-	8.169295346121482	6.248964262994259	CCCCTAAATCA
chr12	40515401	40515402	chr12:40515402:G:A	rs73114281	G	A	.	Hoxa9_MA0594.1	1	1	-	8.169295346121482	7.277745585011086	CCCCTAAATCA
chr12	40602210	40602211	chr12:40602211:T:C	rs1918943	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	40672827	40672828	chr12:40672828:T:A	rs545600593	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	40794535	40794536	chr12:40794536:C:T	rs4406896	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr12	40980894	40980895	chr12:40980895:C:A	rs10784981	C	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	41045643	41045644	chr12:41045644:G:A	rs280374	G	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	41194169	41194170	chr12:41194170:T:C	rs73117080	T	C	T	Hoxa9_MA0594.1	6	1	-	7.643262731242535	0.8256619454868772	GTCATGAATCT
chr12	41340005	41340006	chr12:41340006:T:G	rs10880043	T	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	41580154	41580155	chr12:41580155:C:T	rs73115867	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	41605033	41605034	chr12:41605034:C:T	rs10082917	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	41605067	41605068	chr12:41605068:A:G	rs441162	A	G	a	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	41802905	41802906	chr12:41802906:C:A	rs183291480	C	A	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	41862352	41862353	chr12:41862353:A:T	rs2079902	A	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr12	41941024	41941025	chr12:41941025:A:G	rs11181267	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	41984015	41984016	chr12:41984016:G:A	rs7958455	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	42135348	42135349	chr12:42135349:G:A	rs73128042	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr12	42335604	42335605	chr12:42335605:C:T	rs3810793	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	42343936	42343937	chr12:42343937:A:G	rs58826545	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	42478302	42478303	chr12:42478303:A:G	rs1669923	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	42525629	42525630	chr12:42525630:T:C	rs2897538	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr12	42769774	42769775	chr12:42769775:G:A	rs2678108	G	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	43080696	43080697	chr12:43080697:G:C	rs1167071	G	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	43097604	43097605	chr12:43097605:A:G	rs1656534	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	43151790	43151791	chr12:43151791:T:C	rs185105067	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr12	43348007	43348008	chr12:43348008:C:T	rs1501442	C	T	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	43540745	43540746	chr12:43540746:A:G	rs275625	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	44372456	44372457	chr12:44372457:C:T	rs60037016	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	44590090	44590091	chr12:44590091:T:C	rs75610404	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	44715079	44715080	chr12:44715080:G:A	rs4544065	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	44764031	44764032	chr12:44764032:G:A	rs11182655	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	45418461	45418462	chr12:45418462:T:C	rs74081808	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	45955075	45955076	chr12:45955076:T:C	rs17096361	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	46000527	46000528	chr12:46000528:T:C	rs7299892	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	46104979	46104980	chr12:46104980:C:A	chr12:46104980:C:A	C	A	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	46108082	46108083	chr12:46108083:T:G	rs10880917	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	46198122	46198123	chr12:46198123:T:C	rs7954255	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	46352230	46352231	chr12:46352231:A:C	rs79502328	A	C	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	46387658	46387659	chr12:46387659:C:T	rs923788	C	T	C	Hoxa9_MA0594.1	0	1	-	8.34024025881841	7.475054746095858	GGAATAAATCA
chr12	46462775	46462776	chr12:46462776:T:C	rs73099595	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	46462776	46462777	chr12:46462777:T:G	rs36010856	T	G	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	46462805	46462806	chr12:46462806:C:T	rs118037017	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	46518048	46518049	chr12:46518049:G:T	rs996865059	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr12	46537926	46537927	chr12:46537927:T:A	rs17121410	T	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	46548123	46548124	chr12:46548124:C:G	rs2252238	C	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr12	46722518	46722519	chr12:46722519:A:G	rs10880995	A	G	A	Hoxa9_MA0594.1	4	1	-	8.18560062555707	1.2768458462418502	ACCATAAAACA
chr12	47102554	47102555	chr12:47102555:G:A	rs2040674	G	A	A	Hoxa9_MA0594.1	0	1	+	7.581196251050087	6.716010738327537	GCCATAAAACT
chr12	48313914	48313915	chr12:48313915:T:G	rs12322347	T	G	T	Hoxa9_MA0594.1	10	1	+	9.182953099595478	4.015770001072243	CTCATCAATCT
chr12	48313915	48313916	chr12:48313916:T:A	rs12322348	T	A	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	48863818	48863819	chr12:48863819:T:A	rs4760597	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	49216443	49216444	chr12:49216444:C:A	rs56119842	C	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	49558997	49558998	chr12:49558998:G:A	rs191487493	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	49711853	49711854	chr12:49711854:T:C	rs12317778	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	49920833	49920834	chr12:49920834:T:C	rs836961	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	49924744	49924745	chr12:49924745:T:C	rs297942	T	C	C	Hoxa9_MA0594.1	0	1	-	8.034113823095115	8.899299335817666	ACCATCAATAA
chr12	49965682	49965683	chr12:49965683:G:A	rs1964676	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	49973551	49973552	chr12:49973552:C:G	rs139985595	C	G	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	50233056	50233057	chr12:50233057:A:C	rs758427119	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	50405294	50405295	chr12:50405295:A:C	chr12:50405295:A:C	A	C	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	50550748	50550749	chr12:50550749:G:T	rs77921900	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	50760854	50760855	chr12:50760855:T:G	rs79578945	T	G	t	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	50762796	50762797	chr12:50762797:A:G	rs4768866	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	51038271	51038272	chr12:51038272:T:C	rs4768876	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr12	51263030	51263031	chr12:51263031:C:T	rs186477814	C	T	C	Hoxa9_MA0594.1	9	1	+	8.417211793056513	5.7924985744722735	GCAGTAAATCA
chr12	51263032	51263033	chr12:51263033:G:C	rs1410393896	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	51345672	51345673	chr12:51345673:G:A	rs373979522	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	51591169	51591170	chr12:51591170:T:G	rs932470768	T	G	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	51591205	51591206	chr12:51591206:G:A	rs1281765881	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	51908957	51908958	chr12:51908958:C:T	rs11169951	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	51963107	51963108	chr12:51963108:A:G	rs772222	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	51971075	51971076	chr12:51971076:C:T	rs191661350	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	52435397	52435398	chr12:52435398:C:T	rs538575858	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	52598394	52598395	chr12:52598395:T:C	rs12422469	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	52601683	52601684	chr12:52601684:G:A	rs3912633	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	52641675	52641676	chr12:52641676:C:T	rs685190	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr12	52817246	52817247	chr12:52817247:C:A	rs2885853	C	A	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	52884644	52884645	chr12:52884645:G:A	rs75711811	G	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr12	53327666	53327667	chr12:53327667:A:C	rs112778209	A	C	A	Hoxa9_MA0594.1	6	1	+	8.774295001881132	5.53687425331607	GCAATAAATTA
chr12	53441627	53441628	chr12:53441628:C:G	rs544584694	C	G	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr12	53587036	53587037	chr12:53587037:C:T	rs10783586	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	53601706	53601707	chr12:53601707:A:G	rs11170608	A	G	A	Hoxa9_MA0594.1	3	1	+	7.929248167365919	4.94745173995706	GCAATAAAACA
chr12	53671173	53671174	chr12:53671174:C:A	rs4759280	C	A	A	Hoxa9_MA0594.1	5	1	-	8.08407129645524	7.626659078256848	GCTATGAATCA
chr12	53686686	53686687	chr12:53686687:C:A	rs7134629	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	53727758	53727759	chr12:53727759:T:C	rs79326490	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	53727800	53727801	chr12:53727801:A:G	rs78404378	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	54049305	54049306	chr12:54049306:A:C	rs7297416	A	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr12	54052246	54052247	chr12:54052247:T:A	chr12:54052247:T:A	T	A	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	54052247	54052248	chr12:54052248:G:A	chr12:54052248:G:A	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	54081412	54081413	chr12:54081413:C:G	rs115895351	C	G	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	54081420	54081421	chr12:54081421:A:G	rs1968896	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr12	54112466	54112467	chr12:54112467:G:A	rs143536658	G	A	-	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	54133682	54133683	chr12:54133683:C:G	rs4759343	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	54133700	54133701	chr12:54133701:C:T	rs554404203	C	T	C	Hoxa9_MA0594.1	2	1	+	7.092706433297016	5.172375350169793	CCCGTCAATCT
chr12	54353505	54353506	chr12:54353506:G:A	rs118003468	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	54359190	54359191	chr12:54359191:C:G	rs571763213	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	54359195	54359196	chr12:54359196:C:A	rs114239968	C	A	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	54359198	54359199	chr12:54359199:G:C	rs557598661	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	54359327	54359328	chr12:54359328:G:A	chr12:54359328:G:A	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	54386452	54386453	chr12:54386453:G:T	rs76243791	G	T	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr12	54394410	54394411	chr12:54394411:T:C	rs73322224	T	C	T	Hoxa9_MA0594.1	9	1	+	8.00320666478695	10.627919883371188	CCCATAAATTT
chr12	54651052	54651053	chr12:54651053:A:T	rs7296446	A	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	54651054	54651055	chr12:54651055:A:T	rs7296448	A	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	54698589	54698590	chr12:54698590:A:T	rs12316925	A	T	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	54744722	54744723	chr12:54744723:C:T	rs7296402	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr12	54984548	54984549	chr12:54984549:G:T	rs114210860	G	T	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	55662371	55662372	chr12:55662372:T:C	rs10876848	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	55675952	55675953	chr12:55675953:T:C	rs536686829	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr12	55713986	55713987	chr12:55713987:G:A	rs7975919	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	56636779	56636780	chr12:56636780:A:G	rs1164810753	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	56636795	56636796	chr12:56636796:G:C	rs117438401	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	56816819	56816820	chr12:56816820:A:G	rs77192336	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	56818705	56818706	chr12:56818706:G:A	rs10876931	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	56928486	56928487	chr12:56928487:T:A	rs840162	T	A	A	Hoxa9_MA0594.1	5	1	-	9.452499902096816	6.478943872101814	AACATAAATCA
chr12	57159215	57159216	chr12:57159216:C:T	rs34505337	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr12	57253590	57253591	chr12:57253591:G:A	rs11172135	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	58064839	58064840	chr12:58064840:T:C	rs10783873	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	58741272	58741273	chr12:58741273:C:T	rs79963450	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	58917040	58917041	chr12:58917041:A:C	rs55978318	A	C	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	58917612	58917613	chr12:58917613:C:G	rs11172822	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	58926674	58926675	chr12:58926675:T:C	rs7969722	T	C	T	Hoxa9_MA0594.1	7	1	-	9.461778229732111	2.5588445560291917	GGCATAAATCA
chr12	59114483	59114484	chr12:59114484:C:G	rs7953477	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	59584068	59584069	chr12:59584069:T:G	rs4411308	T	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	59725796	59725797	chr12:59725797:G:A	chr12:59725797:G:A	G	A	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	59725796	59725797	chr12:59725797:G:C	rs1795885	G	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	60140801	60140802	chr12:60140802:T:G	rs11173338	T	G	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	60158895	60158896	chr12:60158896:T:C	rs4758855	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	60488209	60488210	chr12:60488210:C:G	rs57389490	C	G	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr12	60704726	60704727	chr12:60704727:G:C	rs2134632	G	C	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	60872849	60872850	chr12:60872850:C:T	rs73118843	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	60926557	60926558	chr12:60926558:G:A	rs10877484	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	60997886	60997887	chr12:60997887:A:G	rs2690347	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	60997887	60997888	chr12:60997888:C:A	rs2690346	C	A	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	60997919	60997920	chr12:60997920:T:C	rs572263051	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr12	61387254	61387255	chr12:61387255:T:C	rs7977324	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr12	61394208	61394209	chr12:61394209:G:A	rs11173952	G	A	A	Hoxa9_MA0594.1	1	1	-	8.13705986561569	7.2455101045052945	GCTATAAATCC
chr12	61449717	61449718	chr12:61449718:A:G	rs7305731	A	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr12	62013291	62013292	chr12:62013292:G:T	rs140780788	G	T	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	62471510	62471511	chr12:62471511:G:A	rs12810119	G	A	G	Hoxa9_MA0594.1	0	1	-	8.425059106811483	5.880093761603215	CACATAAATCT
chr12	62527169	62527170	chr12:62527170:A:G	rs7964791	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr12	62601488	62601489	chr12:62601489:A:G	rs4763179	A	G	G	Hoxa9_MA0594.1	4	1	-	7.811441225681866	0.9026864463666464	CTCATCTATCA
chr12	62601559	62601560	chr12:62601560:G:A	rs4763180	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	62656114	62656115	chr12:62656115:G:A	rs139003319	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	62695329	62695330	chr12:62695330:T:G	rs1845375	T	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	62695348	62695349	chr12:62695349:A:T	rs61919541	A	T	A	Hoxa9_MA0594.1	7	1	+	8.232403979495325	1.3294703057924049	CTCATTAATCA
chr12	62702506	62702507	chr12:62702507:C:T	rs7358547	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr12	62702511	62702512	chr12:62702512:T:A	rs6581458	T	A	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	62712927	62712928	chr12:62712928:G:A	rs4763192	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	62717271	62717272	chr12:62717272:C:G	rs73312424	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	62768130	62768131	chr12:62768131:G:A	rs116753427	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	63045872	63045873	chr12:63045873:T:C	rs112085829	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	63223920	63223921	chr12:63223921:C:T	chr12:63223921:C:T	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr12	63298353	63298354	chr12:63298354:G:C	rs61934697	G	C	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	63298714	63298715	chr12:63298715:C:T	rs17099254	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr12	63305311	63305312	chr12:63305312:G:A	rs1146110	G	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr12	63326596	63326597	chr12:63326597:C:T	rs1146117	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	63529060	63529061	chr12:63529061:T:C	rs12319507	T	C	t	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	64617929	64617930	chr12:64617930:A:G	rs184138191	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	64621912	64621913	chr12:64621913:G:T	rs188674288	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	64624340	64624341	chr12:64624341:T:G	rs7302505	T	G	T	Hoxa9_MA0594.1	6	1	-	8.425452190470368	5.188031441905307	GCAATTAATCA
chr12	64624356	64624357	chr12:64624357:T:C	rs11175471	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	64666114	64666115	chr12:64666115:C:T	rs7959471	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	64875266	64875267	chr12:64875267:G:A	rs939875	G	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	65089672	65089673	chr12:65089673:A:G	rs560515382	A	G	a	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	65372717	65372718	chr12:65372718:T:C	rs10784447	T	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	65494900	65494901	chr12:65494901:A:G	rs187511126	A	G	A	Hoxa9_MA0594.1	3	1	+	8.62774971750127	5.645953290092412	CCCATAAAACA
chr12	65494912	65494913	chr12:65494913:T:G	rs10784469	T	G	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	65511345	65511346	chr12:65511346:C:T	rs79487293	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	65532487	65532488	chr12:65532488:C:G	rs117819820	C	G	C	Hoxa9_MA0594.1	0	1	+	8.51281655705086	8.93585297782921	CCAATAAATCC
chr12	65533818	65533819	chr12:65533819:C:A	rs116102984	C	A	c	Hoxa9_MA0594.1	9	1	+	11.39900822046537	8.33117838756928	GCAATAAATCA
chr12	65593708	65593709	chr12:65593709:A:C	rs4307765	A	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	66092596	66092597	chr12:66092597:C:G	rs12426813	C	G	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	66164353	66164354	chr12:66164354:G:T	rs113561300	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	66499151	66499152	chr12:66499152:T:A	rs987562	T	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	66600708	66600709	chr12:66600709:G:T	rs6581706	G	T	G	Hoxa9_MA0594.1	1	1	-	8.431006454478752	6.228145677919046	TCAATAAATCA
chr12	66695549	66695550	chr12:66695550:G:A	rs716226	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr12	67506608	67506609	chr12:67506609:G:T	rs73128389	G	T	G	Hoxa9_MA0594.1	1	1	-	9.130625221022317	6.9277644444626105	GCTATAAATCT
chr12	67708975	67708976	chr12:67708976:G:C	rs10784642	G	C	g	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	67748588	67748589	chr12:67748589:G:T	rs4913359	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	67811823	67811824	chr12:67811824:A:G	rs1819844	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	67967162	67967163	chr12:67967163:A:G	rs1548653	A	G	A	Hoxa9_MA0594.1	3	1	+	8.51281655705086	5.531020129642001	CCAATAAATCC
chr12	68040589	68040590	chr12:68040590:T:C	rs188151450	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	68100450	68100451	chr12:68100451:C:T	rs55859520	C	T	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	68264253	68264254	chr12:68264254:A:G	rs756213	A	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	68264754	68264755	chr12:68264755:G:A	rs10878798	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	68429059	68429060	chr12:68429060:A:G	rs17105481	A	G	A	Hoxa9_MA0594.1	7	1	+	8.382435955163896	1.4795022814609753	GCAATCAATCC
chr12	68686128	68686129	chr12:68686129:T:C	rs2468418	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr12	68983212	68983213	chr12:68983213:C:G	rs10878884	C	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	69053501	69053502	chr12:69053502:A:G	rs78094212	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	69225611	69225612	chr12:69225612:A:G	rs6581887	A	G	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	69275153	69275154	chr12:69275154:C:T	rs575627	C	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	69388373	69388374	chr12:69388374:T:G	rs79232158	T	G	T	Hoxa9_MA0594.1	3	1	-	7.529537515497607	3.6013230910183656	TCCATCAATCT
chr12	69948174	69948175	chr12:69948175:T:C	rs7972006	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	70032221	70032222	chr12:70032222:T:C	rs578244516	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	70237557	70237558	chr12:70237558:C:T	rs7138424	C	T	T	Hoxa9_MA0594.1	3	1	-	7.618418680842992	10.60021510825185	GCTGTAAATCA
chr12	70237576	70237577	chr12:70237577:G:A	rs12819904	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr12	70812813	70812814	chr12:70812814:C:G	rs11178437	C	G	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr12	70852916	70852917	chr12:70852917:C:T	rs74102029	C	T	C	Hoxa9_MA0594.1	3	1	-	9.115713343191864	12.097509770600722	CCCGTAAATCA
chr12	71536794	71536795	chr12:71536795:G:T	rs58224144	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	71806888	71806889	chr12:71806889:A:G	rs1305734239	A	G	A	Hoxa9_MA0594.1	4	1	-	9.452499902096816	2.543745122781596	AACATAAATCA
chr12	71973874	71973875	chr12:71973875:A:G	rs1843812	A	G	G	Hoxa9_MA0594.1	2	1	+	8.45982798789041	3.0574659710557723	CCAATGAATCA
chr12	72227414	72227415	chr12:72227415:C:A	rs2367895	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	72333937	72333938	chr12:72333938:G:A	rs3858590	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	72606238	72606239	chr12:72606239:G:A	rs1864838	G	A	G	Hoxa9_MA0594.1	10	1	-	8.300655674909967	9.294221030316594	ATCATAAATCC
chr12	73612818	73612819	chr12:73612819:A:G	rs77064246	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	74039302	74039303	chr12:74039303:A:G	rs117522646	A	G	a	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	74537445	74537446	chr12:74537446:C:G	rs374099247	C	G	C	Hoxa9_MA0594.1	0	1	+	7.440758349612847	7.8637947703911975	CCAGTCAATCA
chr12	75387751	75387752	chr12:75387752:C:T	rs11180481	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	75872731	75872732	chr12:75872732:A:G	rs1275606	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	75965815	75965816	chr12:75965816:C:T	rs180840590	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	76007032	76007033	chr12:76007033:T:A	rs77033124	T	A	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	76184057	76184058	chr12:76184058:G:A	rs11115201	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	76267310	76267311	chr12:76267311:G:A	rs1554276	G	A	g	Hoxa9_MA0594.1	10	1	-	10.057390948742912	11.050956304149539	GCCATAAATCC
chr12	76296295	76296296	chr12:76296296:C:T	rs10859484	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	76461169	76461170	chr12:76461170:A:G	rs7301198	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	76696312	76696313	chr12:76696313:G:A	rs11115052	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr12	76871946	76871947	chr12:76871947:G:C	rs1011547762	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	76947709	76947710	chr12:76947710:C:T	rs6539840	C	T	T	Hoxa9_MA0594.1	5	1	+	8.729708420148697	6.309569412819009	GCCATCCATCA
chr12	77019171	77019172	chr12:77019172:A:G	rs111473453	A	G	A	Hoxa9_MA0594.1	5	1	+	8.397354331692144	5.881210519895534	GATATAAATCA
chr12	77087445	77087446	chr12:77087446:T:C	rs61930673	T	C	T	Hoxa9_MA0594.1	2	1	-	8.382435955163896	2.9800739383292587	GCAATCAATCC
chr12	77102292	77102293	chr12:77102293:G:A	rs61930294	G	A	G	Hoxa9_MA0594.1	1	1	-	9.064232820513286	8.17268305940289	ACAATAAATCT
chr12	77167069	77167070	chr12:77167070:T:G	rs771628	T	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	77190142	77190143	chr12:77190143:G:A	rs73401549	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	77325971	77325972	chr12:77325972:C:T	rs183398620	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	77401970	77401971	chr12:77401971:T:C	rs11105099	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	77565383	77565384	chr12:77565384:G:T	rs11105667	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	77728286	77728287	chr12:77728287:T:C	rs151288618	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	77921172	77921173	chr12:77921173:G:A	rs4542458	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	78191943	78191944	chr12:78191944:C:T	rs387311	C	T	c	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr12	78208004	78208005	chr12:78208005:G:A	rs300493	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	78878143	78878144	chr12:78878144:G:T	rs10861071	G	T	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	79056977	79056978	chr12:79056978:G:A	rs73148248	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	79174562	79174563	chr12:79174563:A:G	rs2694685	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	79725771	79725772	chr12:79725772:A:G	rs73136686	A	G	A	Hoxa9_MA0594.1	8	1	-	7.66103487567689	0.7877468255770013	CCTATGAATCA
chr12	80446146	80446147	chr12:80446147:A:G	rs7296335	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	80678149	80678150	chr12:80678150:G:T	rs1731784	G	T	T	Hoxa9_MA0594.1	1	1	-	9.506381912457487	7.303521135897781	CCAATAAATCT
chr12	80913216	80913217	chr12:80913217:A:T	rs1402347	A	T	A	Hoxa9_MA0594.1	10	1	+	9.030647460072283	7.561057572842749	ACCATAAATTA
chr12	81181915	81181916	chr12:81181916:C:T	rs12425311	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	81207846	81207847	chr12:81207847:A:G	rs10735439	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	81317359	81317360	chr12:81317360:G:A	rs77463020	G	A	G	Hoxa9_MA0594.1	3	1	-	7.615878323456167	4.7013561053277195	CCCCTCAATCA
chr12	81510342	81510343	chr12:81510343:C:T	rs1879800	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	81668532	81668533	chr12:81668533:C:T	rs12826173	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	81810486	81810487	chr12:81810487:C:A	rs7309624	C	A	C	Hoxa9_MA0594.1	5	1	+	7.8716420841461705	8.425059106811483	CACATCAATCT
chr12	81810490	81810491	chr12:81810491:C:T	rs139078609	C	T	C	Hoxa9_MA0594.1	9	1	+	7.8716420841461705	5.246928865561931	CACATCAATCT
chr12	82793769	82793770	chr12:82793770:T:C	rs75668153	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	83143617	83143618	chr12:83143618:A:G	rs12423116	A	G	A	Hoxa9_MA0594.1	4	1	-	8.99912740272714	2.090372623411919	TCCATCAATCA
chr12	83143798	83143799	chr12:83143799:C:G	rs7311999	C	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	83197525	83197526	chr12:83197526:T:C	rs1517815	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	83347765	83347766	chr12:83347766:A:T	rs6539739	A	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	83476206	83476207	chr12:83476207:C:T	chr12:83476207:C:T	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	83476212	83476213	chr12:83476213:A:G	rs1965961	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr12	83625967	83625968	chr12:83625968:A:T	rs1397897	A	T	A	Hoxa9_MA0594.1	7	1	+	8.232403979495325	1.3294703057924049	CTCATTAATCA
chr12	84033034	84033035	chr12:84033035:C:T	rs10779069	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	84154670	84154671	chr12:84154671:A:G	rs10779077	A	G	a	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	84314226	84314227	chr12:84314227:A:C	rs12307352	A	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr12	84661782	84661783	chr12:84661783:T:C	rs10779122	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	85274392	85274393	chr12:85274393:C:G	rs16897	C	G	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	85310712	85310713	chr12:85310713:G:A	rs1398447	G	A	G	Hoxa9_MA0594.1	9	1	-	8.169295346121482	5.544582127537243	CCCCTAAATCA
chr12	85388967	85388968	chr12:85388968:G:T	rs117000363	G	T	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	85388972	85388973	chr12:85388973:C:T	rs74111997	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr12	85591998	85591999	chr12:85591999:A:G	rs2199517	A	G	G	Hoxa9_MA0594.1	7	1	+	8.224163582081468	1.3212299083785486	CTCGTAAATCA
chr12	85617621	85617622	chr12:85617622:C:G	rs7136236	C	G	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	85759134	85759135	chr12:85759135:A:G	rs10779207	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	85807924	85807925	chr12:85807925:T:C	rs7132683	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	86660832	86660833	chr12:86660833:C:A	rs1469383	C	A	C	Hoxa9_MA0594.1	0	1	-	10.60021510825185	7.632213342265231	GCTATAAATCA
chr12	86883234	86883235	chr12:86883235:C:A	rs138268075	C	A	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	86892603	86892604	chr12:86892604:G:T	rs10858518	G	T	G	Hoxa9_MA0594.1	2	1	-	7.515742854075367	6.394204883161664	GCCGTCAATCT
chr12	87337112	87337113	chr12:87337113:T:C	rs78000293	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr12	87662021	87662022	chr12:87662022:T:C	rs78446050	T	C	T	Hoxa9_MA0594.1	7	1	-	8.397354331692144	1.4944206579892247	GATATAAATCA
chr12	87853789	87853790	chr12:87853790:C:A	rs7972861	C	A	A	Hoxa9_MA0594.1	2	1	+	7.565650261440604	6.444112290526903	GCCATAAAGCA
chr12	88877610	88877611	chr12:88877611:T:C	rs1440709255	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	89020221	89020222	chr12:89020222:G:C	rs566611667	G	C	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	89231102	89231103	chr12:89231103:G:T	rs10506968	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	89253901	89253902	chr12:89253902:T:C	rs17354345	T	C	T	Hoxa9_MA0594.1	4	1	+	10.074502860705875	3.1657480813906536	CCCATCAATCT
chr12	89461829	89461830	chr12:89461830:T:C	rs1332721835	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	89544252	89544253	chr12:89544253:G:A	rs4842664	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr12	89825845	89825846	chr12:89825846:T:C	rs79745607	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	89849269	89849270	chr12:89849270:C:T	rs9788161	C	T	c	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	89993104	89993105	chr12:89993105:G:A	rs17192551	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	90167672	90167673	chr12:90167673:T:C	rs1371076	T	C	T	Hoxa9_MA0594.1	7	1	-	8.642730421240351	1.7397967475374307	GAAATCAATCA
chr12	90292440	90292441	chr12:90292441:G:A	rs7953788	G	A	g	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	90399491	90399492	chr12:90399492:C:T	rs1384603	C	T	C	Hoxa9_MA0594.1	9	1	+	9.552544425392455	6.927831206808215	TCCATAAATCA
chr12	90448192	90448193	chr12:90448193:A:C	rs11105620	A	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	90622365	90622366	chr12:90622366:G:A	rs2520500	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	90858714	90858715	chr12:90858715:G:C	rs10745532	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	90990843	90990844	chr12:90990844:A:G	rs1920765	A	G	G	Hoxa9_MA0594.1	1	1	-	10.084422038576625	10.97597179968702	CTAATAAATCA
chr12	91098716	91098717	chr12:91098717:G:A	chr12:91098717:G:A	G	A	G	Hoxa9_MA0594.1	1	1	-	10.185770791426988	9.294221030316594	ACCATAAATCT
chr12	91127511	91127512	chr12:91127512:C:T	rs111581932	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr12	91219571	91219572	chr12:91219572:T:C	rs1522404	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	91239958	91239959	chr12:91239959:T:C	chr12:91239959:T:C	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	91579585	91579586	chr12:91579586:G:A	rs7962133	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	91579588	91579589	chr12:91579589:G:T	rs73218614	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	91664094	91664095	chr12:91664095:G:A	rs12307942	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr12	91690976	91690977	chr12:91690977:T:A	rs9634203	T	A	T	Hoxa9_MA0594.1	6	1	-	12.097509770600722	9.256408009457576	CCCATAAATCA
chr12	91778801	91778802	chr12:91778802:G:T	chr12:91778802:G:T	G	T	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	91845389	91845390	chr12:91845390:A:G	rs76280667	A	G	A	Hoxa9_MA0594.1	2	1	+	9.53100501591131	4.128642999076673	CTAATCAATCA
chr12	91954791	91954792	chr12:91954792:A:G	rs886466815	A	G	A	Hoxa9_MA0594.1	3	1	+	9.7350295955293	6.753233168120441	ACTATAAATCA
chr12	92144896	92144897	chr12:92144897:G:A	rs28399538	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	92530910	92530911	chr12:92530911:T:C	rs1515556	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	92556106	92556107	chr12:92556107:C:A	rs4760458	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	92595922	92595923	chr12:92595923:A:T	rs11610669	A	T	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	92654812	92654813	chr12:92654813:A:G	rs1564769	A	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	92727094	92727095	chr12:92727095:A:G	rs76004088	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	92727117	92727118	chr12:92727118:A:T	rs4760491	A	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	93301664	93301665	chr12:93301665:C:T	rs11106955	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	93544713	93544714	chr12:93544714:T:C	rs10859516	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr12	93686820	93686821	chr12:93686821:C:T	rs77139894	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	93842678	93842679	chr12:93842679:A:G	rs17041107	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr12	93978665	93978666	chr12:93978666:A:T	rs115817838	A	T	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	94053375	94053376	chr12:94053376:T:C	rs746270232	T	C	T	Hoxa9_MA0594.1	0	1	-	8.01767889594621	8.88286440866876	ACAATGAATCA
chr12	94053379	94053380	chr12:94053380:G:A	rs11107350	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	94428493	94428494	chr12:94428494:C:T	rs6538499	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr12	94428512	94428513	chr12:94428513:G:T	rs68122601	G	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr12	94490157	94490158	chr12:94490158:G:A	rs11107554	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	94554522	94554523	chr12:94554523:G:A	rs17022716	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	94554556	94554557	chr12:94554557:C:A	rs141814809	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	94674133	94674134	chr12:94674134:T:C	rs11836578	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	94706273	94706274	chr12:94706274:C:T	rs12581529	C	T	C	Hoxa9_MA0594.1	0	1	-	9.95404143668966	9.08885592396711	GTAATCAATCA
chr12	94790380	94790381	chr12:94790381:T:C	rs4761666	T	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	94798354	94798355	chr12:94798355:T:G	rs10745696	T	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr12	94853982	94853983	chr12:94853983:T:A	rs7312282	T	A	.	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	95372140	95372141	chr12:95372141:G:A	rs4762404	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr12	95569144	95569145	chr12:95569145:A:G	rs117804583	A	G	A	Hoxa9_MA0594.1	7	1	+	8.41793993009146	1.5150062563885407	ACCATACATCA
chr12	95637495	95637496	chr12:95637496:C:T	rs35304207	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr12	95766397	95766398	chr12:95766398:T:C	rs10859938	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	96026434	96026435	chr12:96026435:T:C	rs763874	T	C	C	Hoxa9_MA0594.1	4	1	+	9.736370122260793	2.8276153429455726	CTCATAAATCT
chr12	96072879	96072880	chr12:96072880:G:C	rs77177460	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	96197647	96197648	chr12:96197648:A:T	rs12424667	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	96223245	96223246	chr12:96223246:A:G	rs2300554	A	G	g	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	96402410	96402411	chr12:96402411:T:C	rs577813174	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr12	96489808	96489809	chr12:96489809:C:T	rs555535124	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	96520834	96520835	chr12:96520835:A:G	rs17316068	A	G	A	Hoxa9_MA0594.1	5	1	+	8.58753084576043	6.071387033963821	ACCATAAATAA
chr12	96534963	96534964	chr12:96534964:G:A	rs183071169	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	96966368	96966369	chr12:96966369:C:T	rs4762345	C	T	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	97075488	97075489	chr12:97075489:C:G	rs78086053	C	G	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr12	97075489	97075490	chr12:97075490:G:A	rs17749843	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr12	97185783	97185784	chr12:97185784:C:G	rs3843653	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr12	97373975	97373976	chr12:97373976:C:A	rs79917200	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	98815844	98815845	chr12:98815845:G:T	rs201427	G	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	98868777	98868778	chr12:98868778:G:A	rs201370	G	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	98973640	98973641	chr12:98973641:C:T	rs59272414	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	98973656	98973657	chr12:98973657:C:T	rs60460550	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	98999589	98999590	chr12:98999590:T:C	rs7965027	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	98999621	98999622	chr12:98999622:G:T	rs7978587	G	T	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	99018094	99018095	chr12:99018095:T:C	rs61933365	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	99176821	99176822	chr12:99176822:G:A	rs2087745	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	99723708	99723709	chr12:99723709:G:T	rs1846799	G	T	g	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	99848495	99848496	chr12:99848496:A:C	rs74659220	A	C	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	100360174	100360175	chr12:100360175:A:G	rs34351561	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	100375789	100375790	chr12:100375790:A:T	rs73374485	A	T	A	Hoxa9_MA0594.1	6	1	+	7.022605952173604	4.1815041910304585	GCCGTGAATCA
chr12	100491328	100491329	chr12:100491329:G:A	rs4764980	G	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	100849962	100849963	chr12:100849963:A:C	rs7971552	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	100959379	100959380	chr12:100959380:A:G	rs12821115	A	G	G	Hoxa9_MA0594.1	3	1	+	7.1129682170592226	4.131171789650365	CCCATAACTCA
chr12	101624195	101624196	chr12:101624196:A:G	rs825067	A	G	G	Hoxa9_MA0594.1	5	1	+	7.994175372278161	5.4780315604815515	CCAGTAAATCA
chr12	101686141	101686142	chr12:101686142:C:T	rs2241555	C	T	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr12	101686143	101686144	chr12:101686144:T:C	rs2241554	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	101772089	101772090	chr12:101772090:A:T	rs11111015	A	T	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	101783542	101783543	chr12:101783543:G:C	rs10860785	G	C	G	Hoxa9_MA0594.1	0	1	+	10.60021510825185	10.1771786874735	GCTATAAATCA
chr12	101968840	101968841	chr12:101968841:T:C	rs4764858	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	102438806	102438807	chr12:102438807:T:C	rs116231652	T	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr12	102745895	102745896	chr12:102745896:T:C	rs10507150	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	102876257	102876258	chr12:102876258:A:G	rs1616681	A	G	A	Hoxa9_MA0594.1	7	1	+	8.043175694344246	1.1402420206413262	AGCATCAATCA
chr12	102962239	102962240	chr12:102962240:A:G	rs1052774453	A	G	A	Hoxa9_MA0594.1	3	1	+	9.552544425392455	6.570747997983595	TCCATAAATCA
chr12	103028069	103028070	chr12:103028070:G:C	rs147174770	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	103044017	103044018	chr12:103044018:G:A	rs17041417	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	103379661	103379662	chr12:103379662:G:A	rs73185877	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	103580853	103580854	chr12:103580854:A:G	rs17494141	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	103767705	103767706	chr12:103767706:T:C	rs79261387	T	C	-	Hoxa9_MA0594.1	7	1	-	8.219694000462	1.3167603267590802	CAAATCAATCA
chr12	103838494	103838495	chr12:103838495:A:T	rs76169521	A	T	A	Hoxa9_MA0594.1	5	1	+	9.552544425392455	6.5789883953974515	TCCATAAATCA
chr12	103858814	103858815	chr12:103858815:T:C	rs2438389	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	103861440	103861441	chr12:103861441:A:G	rs12815289	A	G	A	Hoxa9_MA0594.1	4	1	-	9.285628926363104	2.376874147047883	CTTATAAATCA
chr12	103951474	103951475	chr12:103951475:A:G	rs11111854	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	103991669	103991670	chr12:103991670:A:G	rs2583274	A	G	G	Hoxa9_MA0594.1	3	1	+	9.7350295955293	6.753233168120441	ACTATAAATCA
chr12	104175545	104175546	chr12:104175546:C:T	rs60264625	C	T	C	Hoxa9_MA0594.1	2	1	+	8.729708420148697	6.809377337021474	GCCATCCATCA
chr12	104175563	104175564	chr12:104175564:C:T	rs116817766	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr12	104288262	104288263	chr12:104288263:A:G	rs12302458	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	104478113	104478114	chr12:104478114:C:A	rs1922263	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr12	104603847	104603848	chr12:104603848:G:A	rs2162661	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	104667980	104667981	chr12:104667981:T:C	rs864454	T	C	C	Hoxa9_MA0594.1	7	1	-	7.118210716167953	0.21527704246503188	CCCATGAATCC
chr12	104668714	104668715	chr12:104668715:A:G	rs117204454	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	104668718	104668719	chr12:104668719:A:G	rs11112152	A	G	A	Hoxa9_MA0594.1	8	1	-	7.390499134806127	0.5172110847062381	CCCATACATCT
chr12	104778193	104778194	chr12:104778194:G:T	rs2463016	G	T	T	Hoxa9_MA0594.1	9	1	-	7.118210716167953	4.050380883271861	CCCATGAATCC
chr12	104957485	104957486	chr12:104957486:A:G	rs576091141	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr12	104957786	104957787	chr12:104957787:T:C	rs112887444	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	105085783	105085784	chr12:105085784:G:A	rs6539191	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	105109637	105109638	chr12:105109638:T:G	rs17036655	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	105218767	105218768	chr12:105218768:G:A	rs1196767	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr12	105714714	105714715	chr12:105714715:C:T	rs56020135	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	105736941	105736942	chr12:105736942:G:A	rs4964157	G	A	-	Hoxa9_MA0594.1	11	0	+	0	0	.
chr12	105740865	105740866	chr12:105740866:C:A	rs10467026	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	105864970	105864971	chr12:105864971:T:C	rs7963923	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	105981954	105981955	chr12:105981955:C:T	rs2569972	C	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	106042740	106042741	chr12:106042741:A:C	rs2468197	A	C	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	106712767	106712768	chr12:106712768:G:A	rs10431462	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	106954053	106954054	chr12:106954054:C:A	chr12:106954054:C:A	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	107103259	107103260	chr12:107103260:C:T	rs114541842	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	107145534	107145535	chr12:107145535:T:A	rs76807028	T	A	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	107175195	107175196	chr12:107175196:T:G	rs78990531	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr12	107232962	107232963	chr12:107232963:A:G	rs2216290	A	G	A	Hoxa9_MA0594.1	10	1	+	8.899082879431504	2.262309893678734	AACATCAATCA
chr12	107369348	107369349	chr12:107369349:A:G	rs4350444	A	G	g	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	107555503	107555504	chr12:107555504:A:C	rs12370569	A	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	107660484	107660485	chr12:107660485:G:A	rs79455174	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	107809986	107809987	chr12:107809987:G:A	rs11113502	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr12	107809999	107810000	chr12:107810000:T:C	rs11113503	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr12	107823095	107823096	chr12:107823096:T:C	rs7488632	T	C	t	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	108078605	108078606	chr12:108078606:A:G	rs4475967	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	108130260	108130261	chr12:108130261:G:T	rs11113750	G	T	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	108130292	108130293	chr12:108130293:G:A	rs74401555	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	108380054	108380055	chr12:108380055:G:A	rs74869626	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	108405329	108405330	chr12:108405330:C:T	rs142853050	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	108449576	108449577	chr12:108449577:C:T	rs76824678	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	108482651	108482652	chr12:108482652:G:A	rs75265082	G	A	G	Hoxa9_MA0594.1	2	1	-	9.00428321168444	7.083952128557216	GTCATAAATTA
chr12	108563429	108563430	chr12:108563430:A:G	rs11113992	A	G	A	Hoxa9_MA0594.1	7	1	+	12.520546191379072	5.617612517676153	GCCATAAATCA
chr12	108948559	108948560	chr12:108948560:A:G	rs555239470	A	G	a	Hoxa9_MA0594.1	3	1	+	9.581365958804113	6.599569531395254	CCCATGAATCA
chr12	108955699	108955700	chr12:108955700:G:A	rs36193038	G	A	g	Hoxa9_MA0594.1	0	1	+	7.838158659038301	6.97297314631575	GTCATCCATCA
chr12	108956799	108956800	chr12:108956800:C:T	rs36154713	C	T	c	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	109385766	109385767	chr12:109385767:G:A	rs61696784	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	109734327	109734328	chr12:109734328:C:T	rs4766484	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	110462107	110462108	chr12:110462108:A:G	rs73191806	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	110564505	110564506	chr12:110564506:A:G	rs7957299	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr12	110566128	110566129	chr12:110566129:G:A	rs146969940	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	110598244	110598245	chr12:110598245:T:C	rs74600568	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr12	110677923	110677924	chr12:110677924:G:A	rs142208490	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	110934283	110934284	chr12:110934284:G:A	rs185941430	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	111608671	111608672	chr12:111608672:T:C	rs2339818	T	C	t	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	112002705	112002706	chr12:112002706:T:C	rs73428216	T	C	T	Hoxa9_MA0594.1	7	1	-	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr12	112174871	112174872	chr12:112174872:C:A	rs148031982	C	A	C	Hoxa9_MA0594.1	1	1	-	8.908361207066799	11.075579407603364	GGCATCAATCA
chr12	112177977	112177978	chr12:112177978:T:A	rs2037745	T	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	112638875	112638876	chr12:112638876:T:G	rs4766987	T	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr12	112714291	112714292	chr12:112714292:A:G	rs2891405	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	112751111	112751112	chr12:112751112:A:G	rs118182067	A	G	A	Hoxa9_MA0594.1	2	1	+	8.45982798789041	3.0574659710557723	CCAATGAATCA
chr12	112926116	112926117	chr12:112926117:A:C	rs6489869	A	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr12	112988374	112988375	chr12:112988375:G:A	rs2040807	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	112996712	112996713	chr12:112996713:A:G	rs1635142	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	113060139	113060140	chr12:113060140:T:C	rs57893303	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr12	113110353	113110354	chr12:113110354:G:A	rs1824276	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr12	113163097	113163098	chr12:113163098:A:G	rs61941434	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	113577835	113577836	chr12:113577836:C:T	rs73201038	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr12	113593480	113593481	chr12:113593481:G:A	rs10850171	G	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	113856213	113856214	chr12:113856214:G:C	rs11066791	G	C	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	113860818	113860819	chr12:113860819:C:G	rs11066792	C	G	C	Hoxa9_MA0594.1	0	1	+	7.2334010995627285	7.656437520341079	CCCATCTATCT
chr12	113860837	113860838	chr12:113860838:A:T	rs12231525	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	114244774	114244775	chr12:114244775:A:T	rs1247941	A	T	A	Hoxa9_MA0594.1	8	1	-	8.364858248347181	4.895098195247729	CTCATATATCA
chr12	114288269	114288270	chr12:114288270:G:A	rs12579617	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	114302318	114302319	chr12:114302319:C:T	rs114361232	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	114669805	114669806	chr12:114669806:G:A	rs75443349	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	114672387	114672388	chr12:114672388:T:C	rs76404097	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	114851162	114851163	chr12:114851163:A:G	rs57407068	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	114935781	114935782	chr12:114935782:C:T	rs75907126	C	T	c	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	114935794	114935795	chr12:114935795:C:T	rs549784006	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr12	115023256	115023257	chr12:115023257:A:G	rs11610491	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	115160941	115160942	chr12:115160942:G:A	rs35366	G	A	A	Hoxa9_MA0594.1	1	1	-	9.895832972794834	9.00428321168444	GCCATAAATTA
chr12	115182151	115182152	chr12:115182152:C:T	rs118097042	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	115204517	115204518	chr12:115204518:C:T	rs7976959	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	115223964	115223965	chr12:115223965:T:A	rs10850456	T	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	115244571	115244572	chr12:115244572:A:G	rs185607179	A	G	A	Hoxa9_MA0594.1	10	1	-	7.643262731242535	6.649697375835908	GTCATGAATCT
chr12	115244621	115244622	chr12:115244622:G:A	rs73204233	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	115306603	115306604	chr12:115306604:A:G	rs79259842	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	115383505	115383506	chr12:115383506:C:T	rs10507259	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	115475019	115475020	chr12:115475020:G:A	rs16945598	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	115710001	115710002	chr12:115710002:A:G	rs11067740	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr12	115787468	115787469	chr12:115787469:A:G	rs708808	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	115823787	115823788	chr12:115823788:C:T	rs191931152	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	116455889	116455890	chr12:116455890:A:C	rs115117194	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	116534548	116534549	chr12:116534549:A:C	rs568784237	A	C	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	116562304	116562305	chr12:116562305:C:T	rs78683855	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	116642862	116642863	chr12:116642863:T:A	rs75705514	T	A	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr12	116853785	116853786	chr12:116853786:C:A	rs903771	C	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr12	116970342	116970343	chr12:116970343:T:C	rs7973240	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr12	117085279	117085280	chr12:117085280:T:G	rs7959940	T	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	117404657	117404658	chr12:117404658:C:T	rs7310750	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	117442475	117442476	chr12:117442476:T:C	rs10774922	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	117486011	117486012	chr12:117486012:A:C	rs1093310	A	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	117513344	117513345	chr12:117513345:A:G	rs4767550	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	117705700	117705701	chr12:117705701:T:C	rs17439358	T	C	T	Hoxa9_MA0594.1	3	1	-	7.58145301587856	4.599656588469701	CCAATCTATCA
chr12	118652595	118652596	chr12:118652596:G:C	rs11610340	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	118686156	118686157	chr12:118686157:A:G	rs2730746	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr12	118715808	118715809	chr12:118715809:T:C	rs2730756	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	119168952	119168953	chr12:119168953:G:A	rs10400454	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	119412861	119412862	chr12:119412862:C:T	rs11614625	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	119552239	119552240	chr12:119552240:C:T	rs7972859	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr12	119613444	119613445	chr12:119613445:G:A	rs142690684	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr12	119613463	119613464	chr12:119613464:A:G	rs2893796	A	G	A	Hoxa9_MA0594.1	2	1	+	9.196147443905666	3.793785427071027	GAAATAAATCA
chr12	120182346	120182347	chr12:120182347:T:C	rs61063054	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr12	120250768	120250769	chr12:120250769:T:C	rs117468623	T	C	T	Hoxa9_MA0594.1	4	1	+	7.700782005789437	0.7920272264742168	GTCCTAAATCA
chr12	120257337	120257338	chr12:120257338:T:C	rs1151832	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	120835339	120835340	chr12:120835340:C:G	rs532703	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	120955384	120955385	chr12:120955385:C:T	rs1532594	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	120955386	120955387	chr12:120955387:G:A	rs7296416	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr12	121184219	121184220	chr12:121184220:C:T	rs1626329	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	121625992	121625993	chr12:121625993:C:A	rs76033280	C	A	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr12	121743277	121743278	chr12:121743278:T:C	rs2720031	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	121965256	121965257	chr12:121965257:A:C	rs76295826	A	C	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	122350305	122350306	chr12:122350306:C:T	rs74501399	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	122420963	122420964	chr12:122420964:T:C	rs11058064	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	122863154	122863155	chr12:122863155:C:G	rs4759438	C	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr12	122863156	122863157	chr12:122863157:G:T	rs535373962	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	123094614	123094615	chr12:123094615:C:T	rs60235187	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr12	123996704	123996705	chr12:123996705:A:G	rs34714686	A	G	A	Hoxa9_MA0594.1	8	1	-	8.91937952935117	2.04609147925128	CCCATCAATTA
chr12	124110947	124110948	chr12:124110948:C:T	rs10846604	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	124259363	124259364	chr12:124259364:C:T	rs12301479	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr12	124466105	124466106	chr12:124466106:T:C	rs4765569	T	C	T	Hoxa9_MA0594.1	3	1	-	9.139216866859913	6.157420439451053	ACCATGAATCA
chr12	124637788	124637789	chr12:124637789:C:T	rs74424093	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr12	124753431	124753432	chr12:124753432:G:A	rs61933425	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	124791240	124791241	chr12:124791241:T:C	rs34137827	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	124809010	124809011	chr12:124809011:G:A	rs7134858	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	124927427	124927428	chr12:124927428:A:G	rs117025451	A	G	A	Hoxa9_MA0594.1	8	1	+	8.62774971750127	7.1426138406622535	CCCATAAAACA
chr12	124927433	124927434	chr12:124927434:T:A	rs56750915	T	A	t	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	124927434	124927435	chr12:124927435:C:T	rs79462111	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr12	124927442	124927443	chr12:124927443:G:A	rs150164286	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	125006610	125006611	chr12:125006611:A:G	rs79818898	A	G	A	Hoxa9_MA0594.1	7	1	+	8.11177607157458	1.208842397871659	CCCATGAATCT
chr12	125014453	125014454	chr12:125014454:C:T	rs7977396	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	125014461	125014462	chr12:125014462:C:T	rs7977512	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr12	125105808	125105809	chr12:125105809:C:T	rs76353490	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr12	125105820	125105821	chr12:125105821:G:A	rs553022831	G	A	G	Hoxa9_MA0594.1	1	1	-	12.097509770600722	11.205960009490326	CCCATAAATCA
chr12	125105836	125105837	chr12:125105837:A:G	rs57489122	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	125220672	125220673	chr12:125220673:A:G	rs117952436	A	G	A	Hoxa9_MA0594.1	7	1	+	7.8637947703911975	0.9608610966882778	GCAGTCAATCA
chr12	125220679	125220680	chr12:125220680:G:C	rs61943062	G	C	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	125259809	125259810	chr12:125259810:A:G	rs56008461	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr12	125290927	125290928	chr12:125290928:T:C	rs4765036	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr12	126068487	126068488	chr12:126068488:A:G	rs725147	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr12	126417620	126417621	chr12:126417621:T:C	rs12309917	T	C	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	126803626	126803627	chr12:126803627:T:C	rs11612526	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr12	126814289	126814290	chr12:126814290:C:T	rs7313436	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr12	126844161	126844162	chr12:126844162:G:A	rs1324178949	G	A	G	Hoxa9_MA0594.1	0	1	+	7.801541603022757	6.936356090300206	GACATGAATCA
chr12	126961256	126961257	chr12:126961257:T:C	rs1732466	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr12	127070628	127070629	chr12:127070629:A:C	rs7312289	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr12	127221041	127221042	chr12:127221042:C:T	rs1509046	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr12	127240620	127240621	chr12:127240621:T:C	rs78327780	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr12	127469536	127469537	chr12:127469537:A:G	rs7966510	A	G	A	Hoxa9_MA0594.1	4	1	-	10.763810917546127	3.855056138230906	ATCATAAATCA
chr12	127623933	127623934	chr12:127623934:A:G	rs35545187	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr12	127650905	127650906	chr12:127650906:C:T	rs12821709	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr12	127990941	127990942	chr12:127990942:G:A	rs55869305	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	128025810	128025811	chr12:128025811:G:A	rs1259763838	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	128080816	128080817	chr12:128080817:C:T	rs11059485	C	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr12	128080851	128080852	chr12:128080852:C:G	rs34522099	C	G	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr12	128141001	128141002	chr12:128141002:C:A	rs1399504	C	A	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr12	128303009	128303010	chr12:128303010:C:G	rs771275216	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr12	128398086	128398087	chr12:128398087:G:C	rs56385911	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	128442229	128442230	chr12:128442230:G:C	rs79934985	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr12	128570738	128570739	chr12:128570739:G:A	rs548033349	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	128776889	128776890	chr12:128776890:T:C	rs1009858	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr12	128784219	128784220	chr12:128784220:T:C	rs78759614	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr12	128891946	128891947	chr12:128891947:G:A	rs73153425	G	A	g	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr12	128948923	128948924	chr12:128948924:C:T	rs34820503	C	T	c	Hoxa9_MA0594.1	0	1	+	8.11177607157458	5.5668107263663105	CCCATGAATCT
chr12	129209141	129209142	chr12:129209142:G:A	rs10847798	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	129300335	129300336	chr12:129300336:A:G	rs4759607	A	G	G	Hoxa9_MA0594.1	6	1	+	9.60598952037383	2.7883887346181724	GTCATCAATCT
chr12	129300346	129300347	chr12:129300347:A:G	rs4759608	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	129328553	129328554	chr12:129328554:G:C	rs4759445	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	129701305	129701306	chr12:129701306:T:A	rs1567509	T	A	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr12	129749362	129749363	chr12:129749363:G:A	rs11060533	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	129772566	129772567	chr12:129772567:A:G	rs192118017	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	129988072	129988073	chr12:129988073:G:A	rs708358	G	A	G	Hoxa9_MA0594.1	2	1	-	7.438771319837264	5.518440236710041	GGCATCAATCT
chr12	130013778	130013779	chr12:130013779:C:T	rs80105856	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr12	130023060	130023061	chr12:130023061:A:G	rs145916889	A	G	a	Hoxa9_MA0594.1	3	1	+	9.929418333235837	6.947621905826979	GCAATAAATCT
chr12	130073812	130073813	chr12:130073813:T:C	rs744912	T	C	T	Hoxa9_MA0594.1	10	1	-	9.452499902096816	2.8157269163440475	AACATAAATCA
chr12	130073826	130073827	chr12:130073827:G:C	rs744911	G	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr12	130104957	130104958	chr12:130104958:C:A	rs12578132	C	A	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr12	130335727	130335728	chr12:130335728:T:G	chr12:130335728:T:G	T	G	t	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr12	130498334	130498335	chr12:130498335:G:A	rs55762517	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr12	130555668	130555669	chr12:130555669:G:A	rs78412518	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr12	130646784	130646785	chr12:130646785:G:A	rs35648761	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr12	130664972	130664973	chr12:130664973:T:C	rs9795672	T	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr12	130706863	130706864	chr12:130706864:C:T	rs2178074	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	130839721	130839722	chr12:130839722:C:T	rs11837962	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr12	130839723	130839724	chr12:130839724:G:A	rs11061164	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	130847429	130847430	chr12:130847430:A:G	rs115376392	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr12	130849907	130849908	chr12:130849908:A:T	rs763621100	A	T	A	Hoxa9_MA0594.1	3	1	+	8.843479834418904	2.000743191811215	ATTATAAATCA
chr12	131151560	131151561	chr12:131151561:T:C	rs4075564	T	C	T	Hoxa9_MA0594.1	8	1	+	9.064232820513286	2.1909447704133966	ACAATAAATCT
chr12	131188706	131188707	chr12:131188707:G:A	rs4430590	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	131215597	131215598	chr12:131215598:T:G	chr12:131215598:T:G	T	G	-	Hoxa9_MA0594.1	17	0	+	0	0	.
chr12	131384533	131384534	chr12:131384534:T:C	rs7958729	T	C	t	Hoxa9_MA0594.1	7	1	-	7.968539260925265	1.0656055872223456	CTCATACATCA
chr12	131407388	131407389	chr12:131407389:T:C	rs7979822	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr12	131445940	131445941	chr12:131445941:A:G	rs12582960	A	G	N	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	131446072	131446073	chr12:131446073:C:A	rs4907458	C	A	N	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr12	131447335	131447336	chr12:131447336:T:G	rs34683442	T	G	t	Hoxa9_MA0594.1	22	0	-	0	0	.
chr12	131570038	131570039	chr12:131570039:G:A	rs7314980	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr12	131599422	131599423	chr12:131599423:T:C	rs7138341	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr12	131614019	131614020	chr12:131614020:C:T	rs2398549	C	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr12	131639480	131639481	chr12:131639481:G:A	rs35951166	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr12	131837004	131837005	chr12:131837005:G:A	rs11611807	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr12	131963397	131963398	chr12:131963398:C:T	rs58728522	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr12	132218077	132218078	chr12:132218078:T:G	rs11247012	T	G	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr12	132243826	132243827	chr12:132243827:C:A	rs76080820	C	A	C	Hoxa9_MA0594.1	2	1	+	8.56229632052655	7.440758349612847	CCCGTCAATCA
chr12	132289096	132289097	chr12:132289097:G:A	rs75237016	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr12	132289102	132289103	chr12:132289103:C:T	rs28433145	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr12	132309930	132309931	chr12:132309931:C:A	rs71470386	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr12	132538161	132538162	chr12:132538162:T:C	rs4883561	T	C	T	Hoxa9_MA0594.1	3	1	-	7.66103487567689	4.679238448268031	CCTATGAATCA
chr12	132545344	132545345	chr12:132545345:G:A	rs78410702	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr12	132581053	132581054	chr12:132581054:G:C	rs3751309	G	C	.	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr12	132609310	132609311	chr12:132609311:T:C	rs2323970	T	C	t	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr12	132735357	132735358	chr12:132735358:T:C	rs10747081	T	C	.	Hoxa9_MA0594.1	14	0	+	0	0	.
chr12	132939783	132939784	chr12:132939784:T:G	rs1298811	T	G	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr12	133212197	133212198	chr12:133212198:G:A	rs142303095	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr13	18594896	18594897	chr13:18594897:A:G	rs4769922	A	G	.	Hoxa9_MA0594.1	3	1	+	8.425452190470368	5.44365576306151	GCAATTAATCA
chr13	18977909	18977910	chr13:18977910:A:C	rs9510850	A	C	.	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	19618868	19618869	chr13:19618869:A:G	rs4769818	A	G	A	Hoxa9_MA0594.1	4	1	-	9.064232820513286	2.1554780411980654	ACAATAAATCT
chr13	20120103	20120104	chr13:20120104:G:A	rs117604988	G	A	G	Hoxa9_MA0594.1	2	1	-	10.627919883371188	8.707588800243967	CCCATAAATCT
chr13	20505640	20505641	chr13:20505641:G:A	rs943624248	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	20820318	20820319	chr13:20820319:T:C	rs11838955	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr13	20943185	20943186	chr13:20943186:C:T	rs117583926	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr13	21458147	21458148	chr13:21458148:A:C	rs11839663	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr13	21458165	21458166	chr13:21458166:A:C	rs9509738	A	C	A	Hoxa9_MA0594.1	4	1	-	8.655440400273676	1.746685620958455	GTCATTAATCA
chr13	21459575	21459576	chr13:21459576:A:G	rs73153967	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr13	21459609	21459610	chr13:21459610:G:T	rs9578384	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	21473265	21473266	chr13:21473266:C:T	rs2874196	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	21740006	21740007	chr13:21740007:T:C	rs9506725	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr13	21818696	21818697	chr13:21818697:T:C	rs4770203	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr13	21818702	21818703	chr13:21818703:T:C	rs12876544	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr13	21960742	21960743	chr13:21960743:A:G	rs3117965	A	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr13	21960771	21960772	chr13:21960772:G:T	rs9550797	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr13	22014685	22014686	chr13:22014686:T:A	rs530213526	T	A	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr13	22114969	22114970	chr13:22114970:T:C	rs986363023	T	C	t	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr13	22114981	22114982	chr13:22114982:C:T	rs78499623	C	T	c	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr13	22272223	22272224	chr13:22272224:A:C	rs1275317911	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	22884054	22884055	chr13:22884055:G:A	rs35752126	G	A	g	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	22938181	22938182	chr13:22938182:G:C	rs149277430	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr13	23007540	23007541	chr13:23007541:C:T	rs9510520	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr13	23007541	23007542	chr13:23007542:G:A	rs9578524	G	A	g	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	23007552	23007553	chr13:23007553:G:A	rs4770364	G	A	G	Hoxa9_MA0594.1	2	1	-	7.075594521334054	5.155263438206831	GCCGTAAATCC
chr13	23427269	23427270	chr13:23427270:C:T	rs4770446	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr13	23866410	23866411	chr13:23866411:G:C	rs9510913	G	C	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	23991319	23991320	chr13:23991320:T:C	rs873868	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	24120390	24120391	chr13:24120391:T:G	rs1325662	T	G	T	Hoxa9_MA0594.1	5	1	-	7.813535555584478	7.260118532919163	GCCATACATCT
chr13	24153761	24153762	chr13:24153762:C:T	rs4769329	C	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	24178843	24178844	chr13:24178844:C:T	rs1028697	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr13	24254933	24254934	chr13:24254934:T:C	rs146251438	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr13	24265435	24265436	chr13:24265436:G:T	rs17080572	G	T	T	Hoxa9_MA0594.1	3	1	-	8.169295346121482	12.097509770600722	CCCCTAAATCA
chr13	24326209	24326210	chr13:24326210:A:C	rs56693520	A	C	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	24661919	24661920	chr13:24661920:C:T	rs188921035	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	24892816	24892817	chr13:24892817:T:C	rs3742165	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr13	25574460	25574461	chr13:25574461:T:C	rs115320164	T	C	T	Hoxa9_MA0594.1	10	1	-	8.260841894848062	1.6240689090952927	ACCATCTATCA
chr13	25574485	25574486	chr13:25574486:T:C	rs9581398	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr13	25876425	25876426	chr13:25876426:A:G	rs306395	A	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	26257496	26257497	chr13:26257497:T:C	rs558824350	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	26473074	26473075	chr13:26473075:C:T	rs147177135	C	T	c	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr13	26473099	26473100	chr13:26473100:G:C	rs61944839	G	C	g	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	26473115	26473116	chr13:26473116:C:G	rs61944840	C	G	c	Hoxa9_MA0594.1	30	0	+	0	0	.
chr13	26583174	26583175	chr13:26583175:G:T	rs17084354	G	T	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	26585058	26585059	chr13:26585059:C:G	rs73166040	C	G	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr13	26668903	26668904	chr13:26668904:A:G	rs17547789	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr13	26915220	26915221	chr13:26915221:T:C	rs9507816	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr13	27088828	27088829	chr13:27088829:G:T	rs74041145	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	27319606	27319607	chr13:27319607:G:A	rs7338535	G	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	27429224	27429225	chr13:27429225:C:G	rs1237710	C	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr13	27498098	27498099	chr13:27498099:A:G	rs1107726	A	G	A	Hoxa9_MA0594.1	3	1	+	6.982587615172259	4.000791187763402	GCCATCACTCA
chr13	27572687	27572688	chr13:27572688:T:C	rs145632271	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr13	27622694	27622695	chr13:27622695:G:A	rs61686087	G	A	G	Hoxa9_MA0594.1	0	1	+	8.774295001881132	7.909109489158581	GCAATAAATTA
chr13	27718948	27718949	chr13:27718949:A:G	rs9512826	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	27840580	27840581	chr13:27840581:C:T	rs9507964	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr13	27851807	27851808	chr13:27851808:C:A	rs9554175	C	A	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	27976872	27976873	chr13:27976873:C:T	rs9551424	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr13	28023701	28023702	chr13:28023702:G:A	rs9512982	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr13	28036703	28036704	chr13:28036704:G:T	rs2491233	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr13	28338450	28338451	chr13:28338451:A:G	chr13:28338451:A:G	A	G	A	Hoxa9_MA0594.1	10	1	-	7.6543638533761875	6.6607984979695605	CCCATTAATCT
chr13	28466869	28466870	chr13:28466870:A:T	rs3751398	A	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr13	28560087	28560088	chr13:28560088:C:T	rs1886323	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	28569686	28569687	chr13:28569687:G:A	rs17555115	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr13	29369547	29369548	chr13:29369548:C:G	rs9578089	C	G	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr13	29455584	29455585	chr13:29455585:C:A	rs1986785	C	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr13	29709687	29709688	chr13:29709688:C:T	rs79336059	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr13	29775099	29775100	chr13:29775100:T:C	rs720083	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr13	29808450	29808451	chr13:29808451:G:T	rs17073905	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr13	29818512	29818513	chr13:29818513:G:C	rs17502811	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	30002791	30002792	chr13:30002792:C:A	rs551584389	C	A	c	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	30021512	30021513	chr13:30021513:G:A	rs115048903	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr13	30159295	30159296	chr13:30159296:G:A	rs116703254	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr13	30257284	30257285	chr13:30257285:G:A	rs1054438	G	A	G	Hoxa9_MA0594.1	1	1	-	10.627919883371188	9.736370122260793	CCCATAAATCT
chr13	30375439	30375440	chr13:30375440:A:G	rs148048540	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr13	30403523	30403524	chr13:30403524:C:A	rs116774539	C	A	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	30673050	30673051	chr13:30673051:G:A	rs61947818	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr13	30673076	30673077	chr13:30673077:G:A	rs61947819	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr13	30681637	30681638	chr13:30681638:T:G	rs61947839	T	G	T	Hoxa9_MA0594.1	10	1	-	11.075579407603364	8.612424164967203	GTCATCAATCA
chr13	31027933	31027934	chr13:31027934:G:A	rs7993227	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	31349370	31349371	chr13:31349371:G:A	rs116632807	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	31671090	31671091	chr13:31671091:T:G	rs73455186	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr13	31966701	31966702	chr13:31966702:A:T	rs73165161	A	T	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	32022739	32022740	chr13:32022740:A:G	rs2038697	A	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr13	32162991	32162992	chr13:32162992:T:C	rs2011150	T	C	T	Hoxa9_MA0594.1	7	1	-	8.169295346121482	1.266361672418562	CCCCTAAATCA
chr13	32197690	32197691	chr13:32197691:T:C	rs2252552	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	32587789	32587790	chr13:32587790:G:A	rs746081304	G	A	G	Hoxa9_MA0594.1	0	1	-	8.306671999370346	5.7617066541620785	CCCATCCATCA
chr13	32587796	32587797	chr13:32587797:T:A	rs116762583	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	32656980	32656981	chr13:32656981:A:G	rs113028082	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	32811441	32811442	chr13:32811442:A:G	rs17077889	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	32846483	32846484	chr13:32846484:G:A	rs17077939	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr13	32909155	32909156	chr13:32909156:C:T	rs2320761	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr13	33091238	33091239	chr13:33091239:A:G	rs9536377	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr13	33151248	33151249	chr13:33151249:A:G	rs2858815	A	G	A	Hoxa9_MA0594.1	4	1	-	9.285628926363104	2.376874147047883	CTTATAAATCA
chr13	33180615	33180616	chr13:33180616:C:G	rs1337834161	C	G	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr13	33268786	33268787	chr13:33268787:C:T	rs4941748	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr13	33294030	33294031	chr13:33294031:A:T	rs4943088	A	T	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr13	33297281	33297282	chr13:33297282:T:C	rs9537066	T	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr13	33297313	33297314	chr13:33297314:A:G	rs4430614	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr13	33552378	33552379	chr13:33552379:T:C	rs148523264	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	34003146	34003147	chr13:34003147:T:C	rs2321749	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	34003172	34003173	chr13:34003173:C:A	rs2321748	C	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr13	34161974	34161975	chr13:34161975:A:G	rs528447663	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	34359396	34359397	chr13:34359397:T:G	rs2786624	T	G	G	Hoxa9_MA0594.1	6	1	-	8.247667105749517	5.010246357184455	ATCATGAATCA
chr13	34361673	34361674	chr13:34361674:G:A	rs28601841	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr13	34467018	34467019	chr13:34467019:A:G	rs9315299	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr13	34546494	34546495	chr13:34546495:A:G	rs1886444	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr13	34723166	34723167	chr13:34723167:T:C	rs9541976	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	34733936	34733937	chr13:34733937:G:A	rs7324868	G	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr13	34822909	34822910	chr13:34822910:G:A	rs9542402	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr13	35260533	35260534	chr13:35260534:T:C	rs7988410	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	35723336	35723337	chr13:35723337:G:A	rs150375462	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr13	35920686	35920687	chr13:35920687:T:C	rs7333831	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	36147044	36147045	chr13:36147045:G:C	rs2076799	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr13	36242253	36242254	chr13:36242254:A:C	rs1925840	A	C	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr13	36259628	36259629	chr13:36259629:A:G	rs1170939	A	G	A	Hoxa9_MA0594.1	3	1	+	10.845591197800056	7.8637947703911975	GCAATCAATCA
chr13	36498785	36498786	chr13:36498786:A:T	rs9547587	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr13	36516336	36516337	chr13:36516337:C:T	rs7330345	C	T	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr13	36526559	36526560	chr13:36526560:C:T	rs56119535	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr13	36917512	36917513	chr13:36917513:T:C	rs12427846	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr13	37138248	37138249	chr13:37138249:C:T	rs7985176	C	T	c	Hoxa9_MA0594.1	2	1	+	7.075594521334054	5.155263438206831	GCCGTAAATCC
chr13	37404393	37404394	chr13:37404394:A:T	rs9532047	A	T	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr13	37460453	37460454	chr13:37460454:A:G	rs78908125	A	G	A	Hoxa9_MA0594.1	4	1	-	9.472796552016483	2.5640417727012634	CCCATAAATTA
chr13	37460458	37460459	chr13:37460459:T:G	rs1322804	T	G	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr13	37890055	37890056	chr13:37890056:T:G	rs9576394	T	G	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	37982107	37982108	chr13:37982108:T:C	rs7985234	T	C	T	Hoxa9_MA0594.1	7	1	-	8.417211793056513	1.5142781193535924	GCAGTAAATCA
chr13	37982669	37982670	chr13:37982670:G:T	rs2039672	G	T	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	37982670	37982671	chr13:37982671:A:T	rs2039673	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	38002918	38002919	chr13:38002919:C:A	rs7337322	C	A	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr13	38369255	38369256	chr13:38369256:A:G	rs7338958	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr13	38375338	38375339	chr13:38375339:G:A	rs2485779	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr13	38440893	38440894	chr13:38440894:C:G	rs1933361	C	G	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	38602472	38602473	chr13:38602473:C:T	rs17058288	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr13	39232527	39232528	chr13:39232528:G:A	rs9548697	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr13	39244963	39244964	chr13:39244964:A:G	rs4436669	A	G	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr13	39257476	39257477	chr13:39257477:A:T	rs1413057	A	T	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr13	39464041	39464042	chr13:39464042:A:C	rs7990910	A	C	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	39516543	39516544	chr13:39516544:A:G	rs1927209	A	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr13	39793931	39793932	chr13:39793932:C:T	rs9603616	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr13	40150171	40150172	chr13:40150172:C:T	rs76857265	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	40215939	40215940	chr13:40215940:G:T	rs9549116	G	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	40233961	40233962	chr13:40233962:G:A	rs9549125	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr13	40235320	40235321	chr13:40235321:T:G	rs60603573	T	G	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr13	40289910	40289911	chr13:40289911:A:G	rs9549151	A	G	G	Hoxa9_MA0594.1	4	1	-	7.301113149517894	0.3923583702026725	GACATCAATCC
chr13	40805993	40805994	chr13:40805994:A:G	rs3783165	A	G	.	Hoxa9_MA0594.1	3	1	+	8.707588800243967	5.725792372835108	CCTATAAATCT
chr13	40916674	40916675	chr13:40916675:C:T	rs7327212	C	T	C	Hoxa9_MA0594.1	1	1	+	8.038914744234518	7.147364983124122	GCCCTCAATCA
chr13	40961064	40961065	chr13:40961065:A:G	rs9566636	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	41102315	41102316	chr13:41102316:G:A	rs9566697	G	A	G	Hoxa9_MA0594.1	2	1	-	8.673564251247663	6.753233168120441	ACCGTAAATCA
chr13	41386050	41386051	chr13:41386051:A:G	rs117256796	A	G	A	Hoxa9_MA0594.1	3	1	+	10.60021510825185	7.618418680842992	GCTATAAATCA
chr13	41505273	41505274	chr13:41505274:T:C	rs2770043	T	C	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	41510509	41510510	chr13:41510510:G:T	rs56268855	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr13	41531183	41531184	chr13:41531184:A:G	rs11617247	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr13	41622806	41622807	chr13:41622807:G:A	rs7981912	G	A	A	Hoxa9_MA0594.1	0	1	+	8.899299335817666	8.034113823095115	GCCATCAATAA
chr13	41666504	41666505	chr13:41666505:C:T	rs9594607	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr13	41961798	41961799	chr13:41961799:G:A	rs9532958	G	A	A	Hoxa9_MA0594.1	9	1	-	10.317685414819367	7.692972196235129	GACATAAATCA
chr13	42326347	42326348	chr13:42326348:G:A	rs9533066	G	A	g	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr13	42671313	42671314	chr13:42671314:C:T	rs1409075	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr13	42745855	42745856	chr13:42745856:T:C	chr13:42745856:T:C	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	42883945	42883946	chr13:42883946:G:A	chr13:42883946:G:A	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr13	42905756	42905757	chr13:42905757:T:C	rs7339053	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	42972481	42972482	chr13:42972482:C:T	rs9533322	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	43269432	43269433	chr13:43269433:G:A	rs41288327	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	43391165	43391166	chr13:43391166:G:A	rs12875944	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr13	43661963	43661964	chr13:43661964:T:C	rs9533574	T	C	T	Hoxa9_MA0594.1	7	1	-	8.899082879431504	1.996149205728583	AACATCAATCA
chr13	43839284	43839285	chr13:43839285:A:G	rs12430925	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr13	44032980	44032981	chr13:44032981:T:A	rs7318307	T	A	T	Hoxa9_MA0594.1	3	1	-	9.679444430235927	2.8367077876282387	GCCATATATCA
chr13	44191132	44191133	chr13:44191133:T:C	rs11838556	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr13	44437672	44437673	chr13:44437673:A:C	rs118156371	A	C	G	Hoxa9_MA0594.1	6	1	+	8.425059106811483	5.187638358246422	CACATAAATCT
chr13	44739223	44739224	chr13:44739224:G:A	rs7319194	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	44831624	44831625	chr13:44831625:C:T	rs113625795	C	T	C	Hoxa9_MA0594.1	1	1	+	8.729708420148697	7.838158659038301	GCCATCCATCA
chr13	44879766	44879767	chr13:44879767:G:T	chr13:44879767:G:T	G	T	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr13	45056729	45056730	chr13:45056730:G:A	rs77567520	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr13	45056753	45056754	chr13:45056754:A:G	rs147902514	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	45114054	45114055	chr13:45114055:T:C	rs17066461	T	C	T	Hoxa9_MA0594.1	1	1	+	7.838158659038301	8.729708420148697	GTCATCCATCA
chr13	45179595	45179596	chr13:45179596:C:T	rs79229473	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	45219284	45219285	chr13:45219285:T:C	rs369816561	T	C	T	Hoxa9_MA0594.1	7	1	-	7.7868232361530945	0.8838895624501748	GGAATCAATCA
chr13	45219303	45219304	chr13:45219304:C:A	rs9526049	C	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr13	45718851	45718852	chr13:45718852:T:C	rs9526103	T	C	T	Hoxa9_MA0594.1	10	1	-	10.763810917546127	4.1270379317933585	ATCATAAATCA
chr13	45809128	45809129	chr13:45809129:C:T	rs74071685	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	45821982	45821983	chr13:45821983:G:A	rs73472516	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr13	45829834	45829835	chr13:45829835:A:T	rs79174114	A	T	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr13	45851256	45851257	chr13:45851257:C:G	rs538055124	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	45851272	45851273	chr13:45851273:C:T	rs6561271	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	46335440	46335441	chr13:46335441:C:G	rs2764594	C	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	46469241	46469242	chr13:46469242:G:A	rs373690094	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	46526269	46526270	chr13:46526270:T:C	rs1326111	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	46604988	46604989	chr13:46604989:C:T	rs75117259	C	T	C	Hoxa9_MA0594.1	0	1	-	8.908361207066799	8.043175694344246	GGCATCAATCA
chr13	46675163	46675164	chr13:46675164:C:A	rs77634840	C	A	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	46686705	46686706	chr13:46686706:A:G	rs842378	A	G	a	Hoxa9_MA0594.1	7	1	+	10.046798085586536	3.143864411883616	GCTATCAATCA
chr13	46844247	46844248	chr13:46844248:G:A	rs9534493	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	46947108	46947109	chr13:46947109:T:C	rs9534531	T	C	T	Hoxa9_MA0594.1	8	1	+	9.642272946632424	2.7689848965325354	ATAATAAATCA
chr13	47181682	47181683	chr13:47181683:G:A	rs12428264	G	A	G	Hoxa9_MA0594.1	0	1	+	8.044303216718815	7.179117703996264	GTAATAAATCC
chr13	47298799	47298800	chr13:47298800:G:T	rs9591028	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr13	47548598	47548599	chr13:47548599:G:A	rs724706	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	47548628	47548629	chr13:47548629:G:C	rs724705	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	47555487	47555488	chr13:47555488:T:C	rs943239	T	C	T	Hoxa9_MA0594.1	3	1	-	6.982587615172259	4.000791187763402	GCCATCACTCA
chr13	47641929	47641930	chr13:47641930:A:T	rs1571062	A	T	a	Hoxa9_MA0594.1	30	0	+	0	0	.
chr13	47700185	47700186	chr13:47700186:A:G	rs7983683	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	47846692	47846693	chr13:47846693:A:T	rs9526401	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr13	48069475	48069476	chr13:48069476:T:C	rs9534943	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	48121694	48121695	chr13:48121695:G:A	rs9316359	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr13	48334723	48334724	chr13:48334724:T:G	rs117941632	T	G	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	48515086	48515087	chr13:48515087:T:C	rs9316388	T	C	T	Hoxa9_MA0594.1	3	1	-	8.18560062555707	5.2038041981482115	ACCATAAAACA
chr13	48532428	48532429	chr13:48532429:G:A	rs115217624	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	48925313	48925314	chr13:48925314:C:T	rs1449581	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr13	49524829	49524830	chr13:49524830:T:C	rs7139494	T	C	T	Hoxa9_MA0594.1	8	1	+	8.66099466428206	1.7877066141821696	TTCATAAATCA
chr13	49635656	49635657	chr13:49635657:G:A	rs7326882	G	A	G	Hoxa9_MA0594.1	1	1	-	10.845591197800056	9.95404143668966	GCAATCAATCA
chr13	49635736	49635737	chr13:49635737:A:G	rs186040479	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr13	50353750	50353751	chr13:50353751:G:T	rs11148178	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	50353754	50353755	chr13:50353755:A:G	rs188033645	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr13	50368808	50368809	chr13:50368809:G:A	rs55901275	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr13	50386241	50386242	chr13:50386242:A:C	rs200220	A	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	50543425	50543426	chr13:50543426:T:C	rs3116605	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	50783656	50783657	chr13:50783657:T:C	rs17399536	T	C	C	Hoxa9_MA0594.1	3	1	-	9.503973926077597	6.52217749866874	GCCATCAATCC
chr13	50788725	50788726	chr13:50788726:G:A	rs74078422	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	50830208	50830209	chr13:50830209:T:C	rs17528331	T	C	T	Hoxa9_MA0594.1	7	1	-	7.8728260628999855	0.9698923891970659	GCCATCAATTT
chr13	50830231	50830232	chr13:50830232:T:A	rs7984881	T	A	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr13	51284854	51284855	chr13:51284855:C:T	rs34587119	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr13	51284856	51284857	chr13:51284857:G:C	rs7991849	G	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr13	51729908	51729909	chr13:51729909:A:G	rs115907097	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	51874817	51874818	chr13:51874818:C:T	rs750488624	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	51874829	51874830	chr13:51874830:C:T	rs11617792	C	T	C	Hoxa9_MA0594.1	0	1	-	9.050786138279621	8.18560062555707	GCCATAAAACA
chr13	51874833	51874834	chr13:51874834:G:A	rs58919798	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	51980884	51980885	chr13:51980885:T:C	rs9535813	T	C	C	Hoxa9_MA0594.1	6	1	+	8.134870038543875	7.738551051121958	CCAATATATCA
chr13	52012590	52012591	chr13:52012591:A:G	rs137897535	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr13	52349536	52349537	chr13:52349537:A:G	rs61957976	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr13	52814614	52814615	chr13:52814615:A:T	rs75322133	A	T	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr13	52857586	52857587	chr13:52857587:C:T	rs76124307	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr13	52857588	52857589	chr13:52857589:C:T	rs79414066	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr13	52880352	52880353	chr13:52880353:A:G	rs7981516	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr13	52886862	52886863	chr13:52886863:C:T	rs9596709	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr13	53064947	53064948	chr13:53064948:A:G	rs147957766	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr13	53451790	53451791	chr13:53451791:G:A	rs118076942	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	53585943	53585944	chr13:53585944:A:C	rs998148	A	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	53593814	53593815	chr13:53593815:C:T	rs1832258	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr13	53638097	53638098	chr13:53638098:T:C	rs73501947	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr13	54464248	54464249	chr13:54464249:T:C	rs12870912	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	54633140	54633141	chr13:54633141:A:G	rs2447970	A	G	a	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr13	55272003	55272004	chr13:55272004:T:A	rs9597145	T	A	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	55667488	55667489	chr13:55667489:A:G	rs17591678	A	G	A	Hoxa9_MA0594.1	7	1	+	9.080937505299248	2.1780038315963273	CCCATCAATCC
chr13	57612864	57612865	chr13:57612865:T:G	rs148462702	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr13	57627974	57627975	chr13:57627975:T:C	rs2807640	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	58085431	58085432	chr13:58085432:A:T	rs79437335	A	T	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	58257568	58257569	chr13:58257569:T:A	rs117366786	T	A	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr13	58727082	58727083	chr13:58727083:A:G	rs77746461	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	58919565	58919566	chr13:58919566:G:A	rs79897083	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr13	59359044	59359045	chr13:59359045:G:T	rs12428489	G	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	59456367	59456368	chr13:59456368:C:T	rs9538434	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	59484116	59484117	chr13:59484117:G:A	rs371017932	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	59644208	59644209	chr13:59644209:G:C	rs9538481	G	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr13	59678225	59678226	chr13:59678226:A:G	rs2077741	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr13	60012592	60012593	chr13:60012593:A:T	rs41537146	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	60254472	60254473	chr13:60254473:A:G	rs138676125	A	G	a	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr13	60269900	60269901	chr13:60269901:A:G	rs12874253	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	60355699	60355700	chr13:60355700:A:T	rs1341853	A	T	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr13	60441943	60441944	chr13:60441944:A:G	rs9528139	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr13	60565943	60565944	chr13:60565944:A:G	rs9317121	A	G	A	Hoxa9_MA0594.1	10	1	-	8.510815797847973	7.517250442441346	ACAATCAATCT
chr13	60933936	60933937	chr13:60933937:T:C	rs9538985	T	C	C	Hoxa9_MA0594.1	10	1	-	8.476262915039317	1.8394899292865485	CCCATCAATAA
chr13	60945458	60945459	chr13:60945459:C:T	rs9570404	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr13	61110986	61110987	chr13:61110987:C:A	rs75958074	C	A	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr13	61890714	61890715	chr13:61890715:T:C	rs9528421	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	62138129	62138130	chr13:62138130:C:A	rs308646	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	62419842	62419843	chr13:62419843:G:A	rs1414647	G	A	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	62823723	62823724	chr13:62823724:C:A	rs9317268	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	63051227	63051228	chr13:63051228:A:G	rs3119941	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr13	63406947	63406948	chr13:63406948:A:T	rs55782740	A	T	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	63435498	63435499	chr13:63435499:C:A	rs1890901	C	A	c	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	63435532	63435533	chr13:63435533:A:G	rs1340493	A	G	g	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	63435904	63435905	chr13:63435905:T:G	rs7326081	T	G	c	Hoxa9_MA0594.1	26	0	+	0	0	.
chr13	63593492	63593493	chr13:63593493:G:A	rs75188528	G	A	G	Hoxa9_MA0594.1	0	1	+	9.929418333235837	9.064232820513286	GCAATAAATCT
chr13	64205936	64205937	chr13:64205937:A:C	rs4591015	A	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr13	64248853	64248854	chr13:64248854:G:C	rs61956850	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr13	64609646	64609647	chr13:64609647:T:C	rs606580	T	C	T	Hoxa9_MA0594.1	3	1	-	7.632183602891756	4.650387175482897	ACCATCAAACA
chr13	64751901	64751902	chr13:64751902:T:G	rs9317442	T	G	G	Hoxa9_MA0594.1	8	1	+	8.787894669125532	3.8329987391870635	GTCATATATCA
chr13	65311173	65311174	chr13:65311174:G:A	rs9571354	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr13	65400763	65400764	chr13:65400764:T:A	rs1034189	T	A	T	Hoxa9_MA0594.1	8	1	+	9.452499902096816	5.982739848997364	AACATAAATCA
chr13	66341768	66341769	chr13:66341769:A:T	rs7996220	A	T	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	66483061	66483062	chr13:66483062:T:C	rs571863910	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	66492615	66492616	chr13:66492616:G:T	rs76328583	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	66529115	66529116	chr13:66529116:T:C	rs75857427	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr13	66691332	66691333	chr13:66691333:C:T	rs2012246	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr13	67140122	67140123	chr13:67140123:A:G	rs9564372	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	67140125	67140126	chr13:67140126:G:A	rs150268737	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	67176324	67176325	chr13:67176325:T:G	rs9571727	T	G	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr13	67713800	67713801	chr13:67713801:G:T	rs1039064381	G	T	G	Hoxa9_MA0594.1	9	1	-	9.050786138279621	5.982956305383529	GCCATAAAACA
chr13	68176860	68176861	chr13:68176861:C:G	rs115158759	C	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr13	68190814	68190815	chr13:68190815:G:A	rs77883459	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr13	68892789	68892790	chr13:68892790:C:T	rs2492555	C	T	c	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	69937714	69937715	chr13:69937715:T:C	rs9592667	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr13	70956056	70956057	chr13:70956057:T:C	rs9572593	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr13	70956111	70956112	chr13:70956112:G:A	rs11148865	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	71031342	71031343	chr13:71031343:T:C	rs9592764	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr13	71767655	71767656	chr13:71767656:A:T	rs9572785	A	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr13	71851758	71851759	chr13:71851759:A:G	rs8000990	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr13	71860972	71860973	chr13:71860973:C:A	rs77379221	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	72244988	72244989	chr13:72244989:A:G	rs340530	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	72367676	72367677	chr13:72367677:A:G	rs550430	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr13	72412504	72412505	chr13:72412505:A:G	rs9542940	A	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr13	72474614	72474615	chr13:72474615:G:A	rs55973008	G	A	G	Hoxa9_MA0594.1	0	1	+	10.845591197800056	9.980405685077507	GCAATCAATCA
chr13	72566206	72566207	chr13:72566207:G:A	rs867157999	G	A	G	Hoxa9_MA0594.1	2	1	-	10.185770791426988	8.265439708299766	ACCATAAATCT
chr13	72650322	72650323	chr13:72650323:T:C	rs9530053	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	72809290	72809291	chr13:72809291:C:G	rs112194511	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	72985843	72985844	chr13:72985844:C:T	rs8002688	C	T	T	Hoxa9_MA0594.1	9	1	+	8.074332694835956	5.449619476251717	CCCATCAAACA
chr13	73079742	73079743	chr13:73079743:T:C	rs4883922	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	73119415	73119416	chr13:73119416:G:A	rs61967407	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr13	73139309	73139310	chr13:73139310:G:A	rs7327286	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr13	73546070	73546071	chr13:73546071:T:C	rs9565013	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr13	73618794	73618795	chr13:73618795:G:A	rs185568584	G	A	G	Hoxa9_MA0594.1	6	1	-	8.86008902203566	9.256408009457576	CCCATACATCA
chr13	73776443	73776444	chr13:73776444:A:G	rs17090402	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	74127837	74127838	chr13:74127838:T:C	rs17222240	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr13	74351900	74351901	chr13:74351901:A:G	rs111613728	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr13	74529018	74529019	chr13:74529019:T:C	rs9543673	T	C	T	Hoxa9_MA0594.1	3	1	-	9.506381912457487	6.524585485048628	CCAATAAATCT
chr13	74629253	74629254	chr13:74629254:T:C	rs11838779	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr13	74641875	74641876	chr13:74641876:C:T	rs9600358	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	74825885	74825886	chr13:74825886:C:G	rs4534707	C	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	74979830	74979831	chr13:74979831:A:G	rs1891005	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	75163463	75163464	chr13:75163464:A:G	rs1326045	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	75173844	75173845	chr13:75173845:C:T	rs114023377	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr13	75227327	75227328	chr13:75227328:A:G	rs576297502	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr13	75257183	75257184	chr13:75257184:G:C	rs4885283	G	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr13	75366357	75366358	chr13:75366358:A:G	rs116283378	A	G	A	Hoxa9_MA0594.1	4	1	-	8.260841894848062	1.3520871155328416	ACCATCTATCA
chr13	75452740	75452741	chr13:75452741:A:T	rs182612835	A	T	A	Hoxa9_MA0594.1	6	1	-	8.364858248347181	11.205960009490326	CTCATATATCA
chr13	75459369	75459370	chr13:75459370:T:C	rs17064497	T	C	T	Hoxa9_MA0594.1	3	1	-	9.980405685077507	6.9986092576686465	ACAATCAATCA
chr13	75597085	75597086	chr13:75597086:A:G	rs6562916	A	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	75600937	75600938	chr13:75600938:G:A	rs9543992	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr13	75875407	75875408	chr13:75875408:G:C	rs9530476	G	C	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr13	75876118	75876119	chr13:75876119:A:C	rs4885357	A	C	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr13	76501178	76501179	chr13:76501179:A:G	rs283979	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr13	76501194	76501195	chr13:76501195:C:A	rs283978	C	A	C	Hoxa9_MA0594.1	1	1	+	8.592331766899832	6.3894709903401266	GCCCTAAATCA
chr13	76515872	76515873	chr13:76515873:C:T	rs283980	C	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	76801298	76801299	chr13:76801299:A:G	rs4242967	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr13	76813070	76813071	chr13:76813071:G:A	rs145385404	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	76889873	76889874	chr13:76889874:T:C	rs17066873	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr13	77152578	77152579	chr13:77152579:C:A	rs1440498929	C	A	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr13	77306425	77306426	chr13:77306426:G:A	rs74362800	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	77387693	77387694	chr13:77387694:A:G	rs73531766	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	77493118	77493119	chr13:77493119:G:T	rs629741	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	77516726	77516727	chr13:77516727:G:A	rs1407989	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	77917133	77917134	chr13:77917134:T:C	rs12720167	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	77946900	77946901	chr13:77946901:C:G	rs140035337	C	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr13	77971964	77971965	chr13:77971965:G:A	rs73552444	G	A	g	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	78122567	78122568	chr13:78122568:G:A	rs9593275	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr13	78239836	78239837	chr13:78239837:G:A	rs17745309	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr13	78507654	78507655	chr13:78507655:G:A	rs9544823	G	A	G	Hoxa9_MA0594.1	0	1	+	10.004402379582464	9.139216866859913	GCCATGAATCA
chr13	78558727	78558728	chr13:78558728:G:T	rs2329101	G	T	T	Hoxa9_MA0594.1	2	1	-	8.99912740272714	7.877589431813438	TCCATCAATCA
chr13	78631276	78631277	chr13:78631277:A:G	rs9574267	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr13	78862749	78862750	chr13:78862750:G:C	rs61970561	G	C	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	78862821	78862822	chr13:78862822:A:G	rs7333777	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	79692098	79692099	chr13:79692099:G:A	rs35229925	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	80011902	80011903	chr13:80011903:A:G	rs11620422	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr13	80084534	80084535	chr13:80084535:T:G	rs560938664	T	G	T	Hoxa9_MA0594.1	9	1	+	8.581246790906087	4.407629047789479	CTCATAAATTA
chr13	80360170	80360171	chr13:80360171:T:G	rs531507325	T	G	T	Hoxa9_MA0594.1	8	1	+	10.507458459354975	5.552562529416506	GTAATAAATCA
chr13	80530124	80530125	chr13:80530125:T:C	rs68177066	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	80742205	80742206	chr13:80742206:G:T	rs550626439	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr13	81562925	81562926	chr13:81562926:G:C	rs6563238	G	C	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr13	81583990	81583991	chr13:81583991:G:A	rs1334372	G	A	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	82139341	82139342	chr13:82139342:T:G	rs9546000	T	G	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr13	82297866	82297867	chr13:82297867:G:A	rs9531323	G	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	82962131	82962132	chr13:82962132:A:T	chr13:82962132:A:T	A	T	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr13	83515765	83515766	chr13:83515766:T:C	rs9593797	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	83839895	83839896	chr13:83839896:A:G	rs75880604	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr13	84137431	84137432	chr13:84137432:C:G	rs116099262	C	G	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr13	84544175	84544176	chr13:84544176:A:C	rs17078338	A	C	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr13	84544187	84544188	chr13:84544188:G:A	rs117672406	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr13	84739638	84739639	chr13:84739639:A:G	rs1526010	A	G	A	Hoxa9_MA0594.1	10	1	+	12.520546191379072	5.883773205626303	GCCATAAATCA
chr13	84808066	84808067	chr13:84808067:G:A	rs1526016	G	A	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr13	84894171	84894172	chr13:84894172:G:T	rs151038849	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	84901113	84901114	chr13:84901114:C:T	rs9531669	C	T	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr13	84925645	84925646	chr13:84925646:A:G	rs9565980	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr13	84958515	84958516	chr13:84958516:T:G	rs9602606	T	G	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr13	84958532	84958533	chr13:84958533:T:C	rs9602607	T	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr13	85349762	85349763	chr13:85349763:T:C	rs74958487	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr13	85349880	85349881	chr13:85349881:C:T	rs11618485	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr13	85772628	85772629	chr13:85772629:C:G	rs185849957	C	G	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	85842118	85842119	chr13:85842119:G:A	rs72632710	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr13	85943906	85943907	chr13:85943907:A:G	rs71442107	A	G	A	Hoxa9_MA0594.1	4	1	-	10.159406543039145	3.250651763723923	GTCATAAATCT
chr13	86586085	86586086	chr13:86586086:G:A	rs9522580	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr13	86612597	86612598	chr13:86612598:A:G	rs9555939	A	G	G	Hoxa9_MA0594.1	4	1	-	9.341231971375704	2.4324771920604826	CACATCAATCA
chr13	86951690	86951691	chr13:86951691:G:A	rs2685796	G	A	A	Hoxa9_MA0594.1	2	1	-	8.4262430855653	6.5059120024380785	GCCATAAATTT
chr13	87130804	87130805	chr13:87130805:A:T	rs9524730	A	T	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	87619040	87619041	chr13:87619041:T:C	rs959536	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr13	88104410	88104411	chr13:88104411:T:A	rs9558380	T	A	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr13	88416946	88416947	chr13:88416947:G:A	rs72634755	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr13	88605532	88605533	chr13:88605533:T:C	rs9559629	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr13	89150421	89150422	chr13:89150422:C:T	rs191138	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr13	89214569	89214570	chr13:89214570:A:T	rs1854904	A	T	T	Hoxa9_MA0594.1	6	1	+	9.980405685077507	7.139303923934359	ACAATCAATCA
chr13	89663352	89663353	chr13:89663353:T:C	rs7338556	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	89686119	89686120	chr13:89686120:G:A	rs73593555	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	89847109	89847110	chr13:89847110:C:T	rs7325003	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr13	89991894	89991895	chr13:89991895:G:T	rs9555963	G	T	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr13	90103402	90103403	chr13:90103403:C:A	rs2805634	C	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr13	90384200	90384201	chr13:90384201:C:T	rs12855016	C	T	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr13	90535877	90535878	chr13:90535878:A:C	rs7999827	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	90819974	90819975	chr13:90819975:A:G	rs9523102	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr13	90968577	90968578	chr13:90968578:G:A	rs9523213	G	A	G	Hoxa9_MA0594.1	9	1	-	9.037868572125442	6.413155353541203	GTAATAAATCT
chr13	91367846	91367847	chr13:91367847:A:T	rs111296346	A	T	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr13	91592257	91592258	chr13:91592258:T:C	rs9560828	T	C	T	Hoxa9_MA0594.1	6	1	-	8.11177607157458	1.2941752858189222	CCCATGAATCT
chr13	91622952	91622953	chr13:91622953:A:T	rs7331112	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr13	91632302	91632303	chr13:91632303:G:A	rs9515962	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	91788257	91788258	chr13:91788258:C:T	rs345448	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	92298735	92298736	chr13:92298736:G:T	rs12859500	G	T	-	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	92330105	92330106	chr13:92330106:A:C	rs1926635	A	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr13	92572772	92572773	chr13:92572773:A:T	rs16947810	A	T	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	93319065	93319066	chr13:93319066:A:G	rs1475448	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr13	93319066	93319067	chr13:93319067:C:T	rs1475449	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	93559988	93559989	chr13:93559989:T:G	rs9589767	T	G	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr13	93560000	93560001	chr13:93560001:T:C	rs115641786	T	C	T	Hoxa9_MA0594.1	3	1	-	8.93585297782921	5.9540565504203515	GCAATAAATCC
chr13	93620708	93620709	chr13:93620709:G:C	rs4523817	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr13	94148768	94148769	chr13:94148769:G:C	rs61962344	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr13	94207008	94207009	chr13:94207009:G:A	rs1581826	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	94252551	94252552	chr13:94252552:G:A	rs4142200	G	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr13	94252554	94252555	chr13:94252555:A:G	rs4142201	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	94369925	94369926	chr13:94369926:C:G	rs60471954	C	G	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr13	94552361	94552362	chr13:94552362:A:T	rs116762039	A	T	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr13	95153743	95153744	chr13:95153744:A:G	rs4148504	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	95258858	95258859	chr13:95258859:G:A	rs2389228	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr13	95275872	95275873	chr13:95275873:C:A	rs73548855	C	A	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	95287676	95287677	chr13:95287677:T:C	rs4773872	T	C	C	Hoxa9_MA0594.1	4	1	+	8.4262430855653	1.5174883062500801	GCCATAAATTT
chr13	95387925	95387926	chr13:95387926:T:A	rs10508012	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr13	95554285	95554286	chr13:95554286:T:A	rs114121880	T	A	T	Hoxa9_MA0594.1	3	1	-	9.7350295955293	2.8922929529216113	ACTATAAATCA
chr13	96003117	96003118	chr13:96003118:T:C	rs2026819	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr13	96086011	96086012	chr13:96086012:C:A	rs9516635	C	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr13	96256173	96256174	chr13:96256174:G:A	rs9525172	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	96587551	96587552	chr13:96587552:G:C	rs142116497	G	C	G	Hoxa9_MA0594.1	1	1	-	7.260118532919163	4.201350571272203	GCCATCCATCT
chr13	96792910	96792911	chr13:96792911:A:T	rs6491306	A	T	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	96834690	96834691	chr13:96834691:A:G	rs7318501	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr13	97112058	97112059	chr13:97112059:C:T	rs114614369	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr13	97260464	97260465	chr13:97260465:C:T	rs73555771	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr13	97360838	97360839	chr13:97360839:T:C	rs7318956	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	97395697	97395698	chr13:97395698:A:G	rs143958613	A	G	A	Hoxa9_MA0594.1	10	1	-	7.656437520341079	6.662872164934452	GCCATCTATCT
chr13	97484713	97484714	chr13:97484714:A:G	rs6491353	A	G	a	Hoxa9_MA0594.1	10	1	+	8.002415769692018	1.3656427839392489	CCAATTAATCA
chr13	97537388	97537389	chr13:97537389:A:G	rs549134746	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr13	97608030	97608031	chr13:97608031:G:A	rs12853743	G	A	g	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	97780617	97780618	chr13:97780618:G:A	rs138151917	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr13	98169358	98169359	chr13:98169359:T:C	rs285092	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr13	98207981	98207982	chr13:98207982:G:A	rs9517213	G	A	A	Hoxa9_MA0594.1	0	1	-	8.45982798789041	5.914862642682142	CCAATGAATCA
chr13	98236371	98236372	chr13:98236372:T:C	rs9582203	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr13	98274445	98274446	chr13:98274446:T:C	rs9517242	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	98348662	98348663	chr13:98348663:T:G	chr13:98348663:T:G	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	98393065	98393066	chr13:98393066:G:A	rs585157	G	A	A	Hoxa9_MA0594.1	2	1	-	8.074332694835956	6.1540016117087335	CCCATCAAACA
chr13	98443396	98443397	chr13:98443397:T:C	rs7993535	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr13	98502748	98502749	chr13:98502749:C:T	rs74109152	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr13	98679313	98679314	chr13:98679314:G:A	rs1626391	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	98875086	98875087	chr13:98875087:A:G	rs2094603	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr13	99027592	99027593	chr13:99027593:T:C	rs2000342	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr13	99039326	99039327	chr13:99039327:C:T	rs9557121	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr13	99144365	99144366	chr13:99144366:G:A	rs7320894	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	99182568	99182569	chr13:99182569:A:C	chr13:99182569:A:C	A	C	a	Hoxa9_MA0594.1	6	1	+	9.895832972794834	6.658412224229773	GCCATAAATTA
chr13	99312572	99312573	chr13:99312573:C:T	rs540484899	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	99356525	99356526	chr13:99356526:T:C	rs181283054	T	C	T	Hoxa9_MA0594.1	8	1	+	7.415122238259951	0.5418341881600619	CTCATCCATCA
chr13	99969065	99969066	chr13:99969066:C:T	rs187807358	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr13	100076109	100076110	chr13:100076110:C:T	rs9513703	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	100763984	100763985	chr13:100763985:T:C	rs61968932	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr13	100818056	100818057	chr13:100818057:T:G	rs75430268	T	G	T	Hoxa9_MA0594.1	6	1	-	11.050956304149539	7.813535555584478	GCCATAAATCT
chr13	100941525	100941526	chr13:100941526:G:A	rs9518222	G	A	G	Hoxa9_MA0594.1	0	1	-	8.485324786288448	5.9403594410801785	CGCATCAATCA
chr13	101146112	101146113	chr13:101146113:T:C	rs7999311	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr13	101655265	101655266	chr13:101655266:A:G	rs4772404	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr13	102329558	102329559	chr13:102329559:A:G	rs61965564	A	G	A	Hoxa9_MA0594.1	7	1	+	8.74080400765128	1.837870333948359	ATCATCAATCT
chr13	102724886	102724887	chr13:102724887:C:T	rs115924356	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr13	102726551	102726552	chr13:102726552:T:C	rs372092433	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr13	102948144	102948145	chr13:102948145:G:A	rs7983085	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr13	102954478	102954479	chr13:102954479:A:G	rs766223	A	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr13	103007547	103007548	chr13:103007548:T:G	rs9518900	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	103114486	103114487	chr13:103114487:C:T	rs200415054	C	T	c	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	103255725	103255726	chr13:103255726:T:C	rs9554938	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr13	103349937	103349938	chr13:103349938:A:G	rs8002886	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr13	103349971	103349972	chr13:103349972:C:T	rs61476468	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	103393657	103393658	chr13:103393658:G:A	chr13:103393658:G:A	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr13	103942273	103942274	chr13:103942274:C:T	rs7338367	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr13	104008117	104008118	chr13:104008118:T:G	rs369203264	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr13	104327133	104327134	chr13:104327134:A:T	rs10508143	A	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr13	104586425	104586426	chr13:104586426:A:T	rs117184061	A	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr13	104586457	104586458	chr13:104586458:C:T	rs115026359	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr13	104950048	104950049	chr13:104950049:A:G	rs113324752	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr13	105030340	105030341	chr13:105030341:A:T	rs7339231	A	T	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr13	105139561	105139562	chr13:105139562:A:T	rs76228510	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr13	105353852	105353853	chr13:105353853:G:A	rs9301023	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr13	105441535	105441536	chr13:105441536:G:C	rs16966638	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr13	105552210	105552211	chr13:105552211:C:T	rs551604717	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr13	105925594	105925595	chr13:105925595:T:C	rs16967702	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr13	105983001	105983002	chr13:105983002:C:T	rs2252003	C	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr13	106034406	106034407	chr13:106034407:G:A	rs61972641	G	A	G	Hoxa9_MA0594.1	0	1	+	12.520546191379072	11.655360678656521	GCCATAAATCA
chr13	106096361	106096362	chr13:106096362:C:A	rs56020580	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	106513489	106513490	chr13:106513490:C:T	rs2893261	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	106691863	106691864	chr13:106691864:A:T	rs6492029	A	T	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	107069391	107069392	chr13:107069392:T:C	rs2245300	T	C	T	Hoxa9_MA0594.1	2	1	-	10.507458459354975	5.105096442520337	GTAATAAATCA
chr13	107554152	107554153	chr13:107554153:A:G	rs147655698	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr13	107837368	107837369	chr13:107837369:T:C	rs4387466	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr13	107868993	107868994	chr13:107868994:C:A	rs816964	C	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	108129377	108129378	chr13:108129378:C:A	rs1931355	C	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	108221215	108221216	chr13:108221216:T:G	rs9520823	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr13	108407849	108407850	chr13:108407850:C:G	rs61593367	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr13	108758584	108758585	chr13:108758585:T:C	rs4772995	T	C	T	Hoxa9_MA0594.1	8	1	+	8.450866189019125	1.5775781389192352	GTCATCAATTA
chr13	108886665	108886666	chr13:108886666:C:T	rs11842213	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr13	108972415	108972416	chr13:108972416:A:C	rs36139984	A	C	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr13	109332130	109332131	chr13:109332131:A:T	rs900741190	A	T	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr13	109466792	109466793	chr13:109466793:T:A	rs61963442	T	A	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	109732084	109732085	chr13:109732085:C:A	rs11069802	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr13	109878816	109878817	chr13:109878817:C:T	rs336216	C	T	T	Hoxa9_MA0594.1	0	1	-	10.159406543039145	9.294221030316594	GTCATAAATCT
chr13	110009437	110009438	chr13:110009438:T:C	rs9559707	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr13	110010634	110010635	chr13:110010635:A:G	rs72652015	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr13	110187680	110187681	chr13:110187681:A:G	rs644582	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr13	110276390	110276391	chr13:110276391:A:T	rs7984097	A	T	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr13	110315793	110315794	chr13:110315794:A:C	rs559003227	A	C	A	Hoxa9_MA0594.1	8	1	-	9.581365958804113	4.626470028865644	CCCATGAATCA
chr13	110323159	110323160	chr13:110323160:G:A	rs11840839	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr13	110363432	110363433	chr13:110363433:C:A	rs872587	C	A	A	Hoxa9_MA0594.1	1	1	+	9.7350295955293	7.532168818969594	ACTATAAATCA
chr13	110443522	110443523	chr13:110443523:G:C	rs9521763	G	C	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	110470842	110470843	chr13:110470843:T:C	rs9555707	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr13	110612830	110612831	chr13:110612831:C:T	rs330554	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr13	110714282	110714283	chr13:110714283:A:G	chr13:110714283:A:G	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	110876660	110876661	chr13:110876661:C:T	rs61282956	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr13	110948584	110948585	chr13:110948585:G:A	rs4773291	G	A	.	Hoxa9_MA0594.1	2	1	-	9.764268392154055	7.84393730902683	GACATCAATCA
chr13	110984703	110984704	chr13:110984704:T:C	rs9522037	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr13	111006386	111006387	chr13:111006387:T:G	rs78804981	T	G	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr13	111280942	111280943	chr13:111280943:G:A	rs2951	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr13	111280963	111280964	chr13:111280964:T:G	rs115233266	T	G	t	Hoxa9_MA0594.1	6	1	-	8.169295346121482	4.93187459755642	CCCCTAAATCA
chr13	111311886	111311887	chr13:111311887:G:A	rs9555787	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	111325020	111325021	chr13:111325021:C:T	rs9588397	C	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	111325146	111325147	chr13:111325147:G:A	rs9588398	G	A	A	Hoxa9_MA0594.1	0	1	-	8.952964889792172	6.407999544583904	CCAATCAATCT
chr13	111903667	111903668	chr13:111903668:A:G	rs7324475	A	G	A	Hoxa9_MA0594.1	7	1	+	9.15524832447614	2.252314650773221	GTTATCAATCA
chr13	111903687	111903688	chr13:111903688:C:T	rs7326848	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	111930007	111930008	chr13:111930008:C:T	rs4907734	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr13	112018192	112018193	chr13:112018193:C:T	rs7993990	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr13	112029545	112029546	chr13:112029546:G:A	rs2031294	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr13	112113479	112113480	chr13:112113480:A:T	rs76650766	A	T	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr13	112176960	112176961	chr13:112176961:G:A	rs72665445	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr13	112261539	112261540	chr13:112261540:G:A	rs13378323	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	112436499	112436500	chr13:112436500:G:A	rs9577363	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	112770832	112770833	chr13:112770833:C:T	rs1463653758	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr13	112770844	112770845	chr13:112770845:C:T	rs2094811	C	T	C	Hoxa9_MA0594.1	2	1	+	7.632183602891756	5.711852519764534	ACCATCAAACA
chr13	112770851	112770852	chr13:112770852:C:G	rs11841922	C	G	C	Hoxa9_MA0594.1	9	1	+	7.632183602891756	0.8338526411909088	ACCATCAAACA
chr13	112775691	112775692	chr13:112775692:C:T	rs189077714	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr13	112866420	112866421	chr13:112866421:G:A	rs970408683	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr13	112879336	112879337	chr13:112879337:C:A	rs1765871	C	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr13	112879338	112879339	chr13:112879339:G:T	rs1765762	G	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr13	113295720	113295721	chr13:113295721:C:T	rs4630437	C	T	C	Hoxa9_MA0594.1	0	1	+	8.074332694835956	5.529367349627688	CCCATCAAACA
chr13	113295739	113295740	chr13:113295740:T:C	rs56784241	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr13	113551202	113551203	chr13:113551203:G:A	rs2259550	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr13	113592463	113592464	chr13:113592464:C:T	rs7326929	C	T	C	Hoxa9_MA0594.1	10	1	+	7.541247136946303	8.53481249235293	GCCATGAATCC
chr13	113598261	113598262	chr13:113598262:A:G	rs4150703	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr13	113598263	113598264	chr13:113598264:G:A	rs76212388	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	113796827	113796828	chr13:113796828:A:T	rs554445776	A	T	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr13	113853532	113853533	chr13:113853533:C:T	rs59799531	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr13	113908554	113908555	chr13:113908555:C:T	rs7489888	C	T	t	Hoxa9_MA0594.1	5	1	-	8.53481249235293	11.050956304149539	GCCATGAATCT
chr13	113945967	113945968	chr13:113945968:C:A	rs1030263633	C	A	c	Hoxa9_MA0594.1	21	0	-	0	0	.
chr13	113946008	113946009	chr13:113946009:G:C	rs918225127	G	C	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr13	114032461	114032462	chr13:114032462:A:G	rs7334530	A	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr14	20631237	20631238	chr14:20631238:A:T	rs545580774	A	T	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	20631240	20631241	chr14:20631241:G:A	rs1243687	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	20631241	20631242	chr14:20631242:A:G	rs775707155	A	G	a	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	20631244	20631245	chr14:20631245:A:C	rs182709056	A	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	20631244	20631245	chr14:20631245:A:G	chr14:20631245:A:G	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	20631248	20631249	chr14:20631249:A:G	rs542904013	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr14	20665701	20665702	chr14:20665702:G:T	rs78186084	G	T	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr14	20677287	20677288	chr14:20677288:C:T	rs147596446	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	21030894	21030895	chr14:21030895:G:A	rs1243459	G	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	21030912	21030913	chr14:21030913:T:C	rs2282035	T	C	T	Hoxa9_MA0594.1	3	1	-	9.623761664808185	6.641965237399327	CCTATCAATCA
chr14	21066630	21066631	chr14:21066631:G:T	rs61978193	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr14	21071979	21071980	chr14:21071980:G:A	rs80065473	G	A	G	Hoxa9_MA0594.1	1	1	-	9.050786138279621	8.159236377169226	GCCATAAAACA
chr14	21071980	21071981	chr14:21071981:C:A	rs79621700	C	A	C	Hoxa9_MA0594.1	0	1	-	9.050786138279621	6.082784372293002	GCCATAAAACA
chr14	21107568	21107569	chr14:21107569:A:G	rs750740873	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr14	21150132	21150133	chr14:21150133:A:G	rs1952145	A	G	A	Hoxa9_MA0594.1	7	1	+	7.390499134806127	0.48756546110320714	CCCATACATCT
chr14	21219854	21219855	chr14:21219855:C:T	rs11848128	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr14	21500733	21500734	chr14:21500734:G:A	rs3752411	G	A	G	Hoxa9_MA0594.1	2	1	-	8.53481249235293	6.614481409225707	GCCATGAATCT
chr14	21840628	21840629	chr14:21840629:G:A	rs12880912	G	A	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	21925336	21925337	chr14:21925337:A:G	rs34567185	A	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	22164808	22164809	chr14:22164809:A:G	rs555327883	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	22247793	22247794	chr14:22247794:C:G	rs11626114	C	G	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	22329545	22329546	chr14:22329546:G:A	rs4981422	G	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr14	22333196	22333197	chr14:22333197:C:T	rs72690856	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	22333231	22333232	chr14:22333232:T:G	rs17198523	T	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr14	22516379	22516380	chr14:22516380:C:T	rs3764160	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	22563895	22563896	chr14:22563896:G:T	rs1483976	G	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	22603116	22603117	chr14:22603117:G:T	rs1483965	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	22614438	22614439	chr14:22614439:A:T	rs149883788	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr14	22808683	22808684	chr14:22808684:G:T	rs56714188	G	T	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr14	23024931	23024932	chr14:23024932:G:A	rs8010955	G	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr14	23055256	23055257	chr14:23055257:T:C	rs117261340	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr14	23177443	23177444	chr14:23177444:C:T	rs28459366	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr14	23251846	23251847	chr14:23251847:C:G	rs12885940	C	G	C	Hoxa9_MA0594.1	9	1	+	8.814258917513376	2.015927955812529	ACCATATATCA
chr14	23251848	23251849	chr14:23251849:T:C	rs72684370	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr14	23298690	23298691	chr14:23298691:T:G	rs573646787	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr14	23320523	23320524	chr14:23320524:G:A	rs745463925	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr14	23320566	23320567	chr14:23320567:C:T	rs45570737	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr14	23538900	23538901	chr14:23538901:C:T	rs954153617	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	23538901	23538902	chr14:23538902:G:A	rs1395030560	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	23666842	23666843	chr14:23666843:A:T	rs221699	A	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr14	23982212	23982213	chr14:23982213:T:G	rs10140294	T	G	-	Hoxa9_MA0594.1	10	1	-	8.431006454478752	5.967851211842591	TCAATAAATCA
chr14	23982228	23982229	chr14:23982229:A:G	rs12587991	A	G	-	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr14	24114736	24114737	chr14:24114737:C:A	rs187479944	C	A	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr14	24279405	24279406	chr14:24279406:G:A	rs753161811	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	24363193	24363194	chr14:24363194:G:C	rs4981509	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr14	24954662	24954663	chr14:24954663:T:C	rs982550571	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr14	25042025	25042026	chr14:25042026:C:T	rs117543225	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr14	25068464	25068465	chr14:25068465:G:A	rs117554449	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr14	25150667	25150668	chr14:25150668:T:C	rs2026060	T	C	t	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	26105352	26105353	chr14:26105353:T:A	rs2064484	T	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	26204958	26204959	chr14:26204959:G:A	rs115600133	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr14	26394270	26394271	chr14:26394271:T:C	rs77002324	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr14	26820736	26820737	chr14:26820737:T:G	rs2295668	T	G	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr14	27077819	27077820	chr14:27077820:A:G	rs61976165	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr14	27077838	27077839	chr14:27077839:G:A	rs4340225	G	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr14	27846212	27846213	chr14:27846213:G:A	rs2022831	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr14	27846232	27846233	chr14:27846233:A:C	rs2022832	A	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	27916566	27916567	chr14:27916567:G:T	rs79574274	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr14	28083660	28083661	chr14:28083661:A:G	rs151123676	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	28661807	28661808	chr14:28661808:C:A	rs114553704	C	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	28742360	28742361	chr14:28742361:A:G	rs118192064	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	29009199	29009200	chr14:29009200:G:C	rs10483344	G	C	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	29034754	29034755	chr14:29034755:G:C	rs1213180	G	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr14	29602114	29602115	chr14:29602115:C:T	rs875677	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	30464772	30464773	chr14:30464773:C:A	rs72664377	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr14	30657652	30657653	chr14:30657653:T:A	rs230342	T	A	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	30748435	30748436	chr14:30748436:A:G	rs11847318	A	G	g	Hoxa9_MA0594.1	3	1	+	8.476262915039317	5.494466487630458	CCCATCAATAA
chr14	31195441	31195442	chr14:31195442:C:T	rs74440743	C	T	C	Hoxa9_MA0594.1	1	1	+	9.02967993770463	8.138130176594235	CCCATAAATAA
chr14	31428909	31428910	chr14:31428910:T:A	rs11624231	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	31707114	31707115	chr14:31707115:T:A	rs2115950	T	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	31712039	31712040	chr14:31712040:C:T	rs79387353	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	31712040	31712041	chr14:31712041:A:G	rs144417988	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	31853404	31853405	chr14:31853405:G:A	rs8016527	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	32018863	32018864	chr14:32018864:A:G	rs8019106	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	32087511	32087512	chr14:32087512:G:A	rs190634142	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr14	32454234	32454235	chr14:32454235:T:A	rs3784193	T	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	32567866	32567867	chr14:32567867:T:C	rs17099295	T	C	T	Hoxa9_MA0594.1	7	1	-	9.53100501591131	2.6280713422083903	CTAATCAATCA
chr14	32601420	32601421	chr14:32601421:T:A	rs11156754	T	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	32836002	32836003	chr14:32836003:C:G	rs12894833	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	33356325	33356326	chr14:33356326:A:G	rs11156786	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	33565867	33565868	chr14:33565868:G:A	rs10131389	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	33693185	33693186	chr14:33693186:G:A	rs75073576	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	33773776	33773777	chr14:33773777:C:T	rs8017055	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr14	33796674	33796675	chr14:33796675:A:G	rs980627344	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	33806744	33806745	chr14:33806745:C:T	rs772526394	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	33987818	33987819	chr14:33987819:C:T	rs8022691	C	T	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr14	34000947	34000948	chr14:34000948:C:T	rs966784	C	T	c	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr14	34022025	34022026	chr14:34022026:T:C	rs34912702	T	C	T	Hoxa9_MA0594.1	4	1	+	7.643262731242535	0.7345079519273134	GTCATGAATCT
chr14	34227704	34227705	chr14:34227705:C:T	rs1244362	C	T	T	Hoxa9_MA0594.1	3	1	+	7.173729231511967	4.25920701338352	ACCCTCAATCA
chr14	34372492	34372493	chr14:34372493:C:G	rs12891015	C	G	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr14	34372515	34372516	chr14:34372516:G:A	rs17102460	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr14	34380701	34380702	chr14:34380702:T:C	rs890830988	T	C	T	Hoxa9_MA0594.1	7	1	-	9.283125442814011	2.3801917691110916	GCCATACATCA
chr14	34380713	34380714	chr14:34380714:A:T	rs41491845	A	T	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr14	34380725	34380726	chr14:34380726:G:A	rs190456338	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	34710826	34710827	chr14:34710827:C:A	rs9491	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	34767910	34767911	chr14:34767911:T:C	rs1959152	T	C	C	Hoxa9_MA0594.1	3	1	-	9.123953740605721	6.142157313196861	CCCATTAATCA
chr14	34785266	34785267	chr14:34785267:A:C	rs4981250	A	C	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr14	34859118	34859119	chr14:34859119:T:A	rs34072166	T	A	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr14	34931075	34931076	chr14:34931076:C:A	rs932473	C	A	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	36069230	36069231	chr14:36069231:C:T	rs146456796	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	36096175	36096176	chr14:36096176:G:C	rs73236778	G	C	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	36271240	36271241	chr14:36271241:A:T	rs77757454	A	T	A	Hoxa9_MA0594.1	8	1	-	9.037868572125442	5.568108519025989	GTAATAAATCT
chr14	36514417	36514418	chr14:36514418:A:G	rs1535341	A	G	G	Hoxa9_MA0594.1	9	1	-	9.342415950129519	11.967129168713758	GCCATCAATTA
chr14	36658799	36658800	chr14:36658800:G:A	rs116333270	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr14	36718425	36718426	chr14:36718426:C:T	rs545609631	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr14	36988828	36988829	chr14:36988829:T:C	rs28487989	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	36989809	36989810	chr14:36989810:T:C	rs2022730	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr14	37777234	37777235	chr14:37777235:A:G	rs8016889	A	G	A	Hoxa9_MA0594.1	3	1	+	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr14	38188244	38188245	chr14:38188245:C:T	rs2803895	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	38200535	38200536	chr14:38200536:C:A	rs77266093	C	A	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	38292254	38292255	chr14:38292255:T:C	rs1168422	T	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr14	38476319	38476320	chr14:38476320:C:T	rs68044536	C	T	C	Hoxa9_MA0594.1	1	1	+	7.0122332387752895	6.120683477664895	GCCATCAAGCA
chr14	38873904	38873905	chr14:38873905:T:C	rs57949090	T	C	T	Hoxa9_MA0594.1	3	1	-	12.097509770600722	9.115713343191864	CCCATAAATCA
chr14	39260192	39260193	chr14:39260193:T:A	rs6571911	T	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr14	39456967	39456968	chr14:39456968:A:G	rs28689476	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr14	39576845	39576846	chr14:39576846:G:A	rs141130532	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	39576856	39576857	chr14:39576857:A:C	rs75360298	A	C	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	40188049	40188050	chr14:40188050:T:C	rs10148725	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr14	40216657	40216658	chr14:40216658:G:A	rs12433686	G	A	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	40576729	40576730	chr14:40576730:C:T	rs66723010	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	40902804	40902805	chr14:40902805:T:A	rs34079886	T	A	T	Hoxa9_MA0594.1	2	1	-	8.134870038543875	7.336076926330353	CCAATATATCA
chr14	40902809	40902810	chr14:40902810:A:G	rs34960060	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr14	41603933	41603934	chr14:41603934:C:A	rs1118860	C	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	41612179	41612180	chr14:41612180:T:C	rs76928162	T	C	T	Hoxa9_MA0594.1	3	1	-	8.814258917513376	5.8324624901045174	ACCATATATCA
chr14	42007070	42007071	chr14:42007071:A:C	rs6572119	A	C	c	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	42123734	42123735	chr14:42123735:C:T	rs7147815	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr14	42163450	42163451	chr14:42163451:T:C	rs74045952	T	C	T	Hoxa9_MA0594.1	4	1	+	7.618418680842992	0.7096639015277719	GCTGTAAATCA
chr14	42662507	42662508	chr14:42662508:C:T	rs17113248	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr14	43525822	43525823	chr14:43525823:C:T	rs61998572	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr14	44426371	44426372	chr14:44426372:T:C	rs78904804	T	C	T	Hoxa9_MA0594.1	1	1	+	7.991314647558364	8.88286440866876	GTAATGAATCA
chr14	44451747	44451748	chr14:44451748:A:G	rs9788494	A	G	a	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	44577737	44577738	chr14:44577738:T:G	rs1104969	T	G	T	Hoxa9_MA0594.1	4	1	+	8.260841894848062	1.3520871155328416	ACCATCTATCA
chr14	44647774	44647775	chr14:44647775:G:A	rs12896263	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr14	44654174	44654175	chr14:44654175:T:C	rs17115379	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	44915042	44915043	chr14:44915043:T:G	rs73348966	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	44915044	44915045	chr14:44915045:C:T	rs780119420	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	45135648	45135649	chr14:45135649:T:C	rs149907045	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	45356216	45356217	chr14:45356217:A:G	rs111425023	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	45638836	45638837	chr14:45638837:C:T	rs61019014	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr14	45772585	45772586	chr14:45772586:T:C	rs11157457	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	45916830	45916831	chr14:45916831:C:T	rs11849656	C	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	46010323	46010324	chr14:46010324:T:C	rs1467548	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr14	46352776	46352777	chr14:46352777:G:A	rs12882450	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	46405404	46405405	chr14:46405405:C:G	rs139274242	C	G	.	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	46885492	46885493	chr14:46885493:G:C	rs2933222	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr14	47210140	47210141	chr14:47210141:T:C	rs11844565	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	47467113	47467114	chr14:47467114:C:T	rs10220431	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr14	47467146	47467147	chr14:47467147:T:C	rs10220643	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr14	48205789	48205790	chr14:48205790:C:T	rs74864067	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr14	48274591	48274592	chr14:48274592:C:T	rs2416155	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	49364183	49364184	chr14:49364184:T:C	rs2150487	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	49866840	49866841	chr14:49866841:T:A	rs61982333	T	A	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr14	49960108	49960109	chr14:49960109:C:T	rs77514627	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr14	50082908	50082909	chr14:50082909:T:C	rs17122063	T	C	T	Hoxa9_MA0594.1	8	1	+	8.707588800243967	1.8343007501440771	CCTATAAATCT
chr14	50116765	50116766	chr14:50116766:T:A	chr14:50116766:T:A	T	A	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr14	50726989	50726990	chr14:50726990:C:T	rs11847756	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr14	50795432	50795433	chr14:50795433:T:C	rs17122909	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr14	50795461	50795462	chr14:50795462:T:C	rs3783279	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	50848241	50848242	chr14:50848242:C:T	rs12436743	C	T	T	Hoxa9_MA0594.1	0	1	-	7.608170449234994	6.742984936512444	GCAATCCATCA
chr14	50971258	50971259	chr14:50971259:A:C	rs9323203	A	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr14	50999922	50999923	chr14:50999923:T:C	rs10151412	T	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	51005226	51005227	chr14:51005227:A:G	rs148236873	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr14	51083916	51083917	chr14:51083917:G:C	rs72687170	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	51473149	51473150	chr14:51473150:G:A	rs75073548	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr14	51540588	51540589	chr14:51540589:C:T	rs77455747	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	51816368	51816369	chr14:51816369:G:C	rs74054488	G	C	G	Hoxa9_MA0594.1	1	1	-	6.837082112140813	3.7783141504938516	CCCATCCATCT
chr14	51952798	51952799	chr14:51952799:T:C	rs1253633	T	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr14	51959013	51959014	chr14:51959014:T:C	rs28437731	T	C	T	Hoxa9_MA0594.1	7	1	-	11.075579407603364	4.172645733900443	GTCATCAATCA
chr14	52111036	52111037	chr14:52111037:G:A	rs55708503	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr14	52128305	52128306	chr14:52128306:G:A	rs10130163	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	52266980	52266981	chr14:52266981:C:T	rs803011	C	T	t	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	52312826	52312827	chr14:52312827:G:A	rs1254601	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	52364132	52364133	chr14:52364133:C:T	rs544959333	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr14	52692393	52692394	chr14:52692394:C:A	rs565466868	C	A	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	52895156	52895157	chr14:52895157:G:A	rs12147852	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	53151187	53151188	chr14:53151188:A:C	rs17126206	A	C	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	53277333	53277334	chr14:53277334:C:T	rs56959600	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	53286098	53286099	chr14:53286099:C:T	rs144746681	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr14	53305572	53305573	chr14:53305573:G:A	rs146180642	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr14	53872774	53872775	chr14:53872775:T:C	rs7160860	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr14	53900569	53900570	chr14:53900570:T:C	rs1957847	T	C	C	Hoxa9_MA0594.1	5	1	-	10.763810917546127	8.247667105749517	ATCATAAATCA
chr14	54253975	54253976	chr14:54253976:G:C	rs55937214	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	54364822	54364823	chr14:54364823:A:C	rs7143990	A	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr14	54444116	54444117	chr14:54444117:C:G	rs948071703	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr14	54444118	54444119	chr14:54444119:C:T	rs10142743	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	54609611	54609612	chr14:54609612:G:A	rs11158017	G	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr14	54629235	54629236	chr14:54629236:G:A	rs56294338	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr14	54638244	54638245	chr14:54638245:C:T	rs8022003	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr14	54796916	54796917	chr14:54796917:A:G	rs1040877	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr14	54877271	54877272	chr14:54877272:C:A	rs114524228	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr14	54877272	54877273	chr14:54877273:G:A	rs115410629	G	A	g	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr14	54903402	54903403	chr14:54903403:C:T	rs66989494	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr14	55031384	55031385	chr14:55031385:A:G	rs1187874	A	G	G	Hoxa9_MA0594.1	4	1	-	10.057390948742912	3.148636169427692	GCCATAAATCC
chr14	55304025	55304026	chr14:55304026:G:C	rs7148171	G	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr14	55412902	55412903	chr14:55412903:C:A	rs192182057	C	A	C	Hoxa9_MA0594.1	3	1	-	7.618418680842992	3.757478465644162	GCTGTAAATCA
chr14	55551926	55551927	chr14:55551927:A:G	rs8010372	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr14	55605924	55605925	chr14:55605925:C:A	rs77315200	C	A	c	Hoxa9_MA0594.1	9	1	+	11.655360678656521	8.58753084576043	ACCATAAATCA
chr14	55731118	55731119	chr14:55731119:T:C	rs1959089	T	C	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	55758497	55758498	chr14:55758498:T:G	rs71412696	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	55846805	55846806	chr14:55846806:G:A	rs2152286	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	55928328	55928329	chr14:55928329:G:A	rs9323291	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr14	55938726	55938727	chr14:55938727:G:T	rs17090733	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	55966099	55966100	chr14:55966100:A:T	rs1188148	A	T	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr14	55969084	55969085	chr14:55969085:A:G	rs1188145	A	G	.	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	56103479	56103480	chr14:56103480:A:G	rs4628882	A	G	A	Hoxa9_MA0594.1	5	1	+	8.00320666478695	5.4870628529903405	CCCATAAATTT
chr14	56153443	56153444	chr14:56153444:G:T	rs79429279	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	56215073	56215074	chr14:56215074:T:C	rs11847205	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	56220209	56220210	chr14:56220210:C:G	rs542151831	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr14	56220239	56220240	chr14:56220240:T:C	rs1953211	T	C	T	Hoxa9_MA0594.1	0	1	-	8.638788413355046	9.503973926077597	ACCATCAATCC
chr14	56505319	56505320	chr14:56505320:G:C	rs7155913	G	C	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	56533517	56533518	chr14:56533518:A:T	rs10149397	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	57044772	57044773	chr14:57044773:T:C	rs17092757	T	C	t	Hoxa9_MA0594.1	3	1	-	8.814258917513376	5.8324624901045174	ACCATATATCA
chr14	57498114	57498115	chr14:57498115:C:G	rs61995062	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	58634729	58634730	chr14:58634730:C:T	rs464582	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	58671617	58671618	chr14:58671618:T:A	rs74508787	T	A	T	Hoxa9_MA0594.1	1	1	+	8.234477646460217	6.923166631010907	GTCATCTATCA
chr14	58763222	58763223	chr14:58763223:G:A	rs1432097	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr14	59091935	59091936	chr14:59091936:T:C	rs117219682	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	59252774	59252775	chr14:59252775:A:G	rs1271500	A	G	A	Hoxa9_MA0594.1	3	1	+	8.497369115614307	5.515572688205449	GCCATCAAACA
chr14	59272770	59272771	chr14:59272771:A:G	rs1370876	A	G	A	Hoxa9_MA0594.1	3	1	+	8.557906459322226	5.576110031913366	GCAATATATCA
chr14	59278371	59278372	chr14:59278372:C:T	rs78622893	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	59310802	59310803	chr14:59310803:C:T	rs17833966	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr14	59434076	59434077	chr14:59434077:G:A	rs78751137	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	59476749	59476750	chr14:59476750:G:T	rs1253097	G	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr14	59485007	59485008	chr14:59485008:A:G	rs369613111	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr14	60051871	60051872	chr14:60051872:C:T	rs77394248	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr14	60098089	60098090	chr14:60098090:T:C	rs219306	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	60734470	60734471	chr14:60734471:C:G	rs549422255	C	G	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	60739185	60739186	chr14:60739186:T:G	rs9672053	T	G	G	Hoxa9_MA0594.1	3	1	-	6.837082112140813	2.9088676876615716	CCCATCCATCT
chr14	60782900	60782901	chr14:60782901:A:T	rs75535113	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	61130827	61130828	chr14:61130828:C:T	rs955597841	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	61130845	61130846	chr14:61130846:C:T	rs559180719	C	T	C	Hoxa9_MA0594.1	3	1	-	8.647200002859819	11.628996430268678	GTCGTAAATCA
chr14	61147915	61147916	chr14:61147916:C:T	rs76481880	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	61161599	61161600	chr14:61161600:C:G	rs8020314	C	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	61178864	61178865	chr14:61178865:C:T	rs191144649	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr14	61178870	61178871	chr14:61178871:A:G	rs140815885	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	61237750	61237751	chr14:61237751:C:T	rs12437406	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	61280400	61280401	chr14:61280401:G:C	rs28731324	G	C	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	61323267	61323268	chr14:61323268:G:T	rs7148876	G	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	61547543	61547544	chr14:61547544:C:A	rs59977792	C	A	C	Hoxa9_MA0594.1	2	1	+	10.057390948742912	8.93585297782921	GCCATAAATCC
chr14	61547544	61547545	chr14:61547545:A:T	rs58800443	A	T	A	Hoxa9_MA0594.1	3	1	+	10.057390948742912	3.214654306135224	GCCATAAATCC
chr14	61547570	61547571	chr14:61547571:T:A	rs2184633	T	A	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	61590008	61590009	chr14:61590009:C:T	rs12897240	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	61751487	61751488	chr14:61751488:C:T	rs57953008	C	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr14	61899816	61899817	chr14:61899817:A:G	rs11158366	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	62213206	62213207	chr14:62213207:G:A	rs72476707	G	A	G	Hoxa9_MA0594.1	0	1	+	9.112852618472068	8.247667105749517	GTCATGAATCA
chr14	62213222	62213223	chr14:62213223:G:A	rs72476708	G	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr14	62796784	62796785	chr14:62796785:A:G	rs35679534	A	G	A	Hoxa9_MA0594.1	3	1	+	9.764268392154055	6.782471964745194	GACATCAATCA
chr14	63438284	63438285	chr14:63438285:C:G	rs150536324	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	63457683	63457684	chr14:63457684:C:T	rs766079	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	63622150	63622151	chr14:63622151:C:T	rs28796021	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	63958561	63958562	chr14:63958562:A:G	rs2994422	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr14	64187484	64187485	chr14:64187485:C:G	rs913552328	C	G	C	Hoxa9_MA0594.1	5	1	+	8.642730421240351	6.680003632109054	GAAATCAATCA
chr14	64501687	64501688	chr14:64501688:A:C	rs560015455	A	C	A	Hoxa9_MA0594.1	6	1	+	8.773111023127315	5.535690274562253	CAAATAAATCA
chr14	64537172	64537173	chr14:64537173:A:C	rs7151976	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	64577606	64577607	chr14:64577607:C:T	rs56403644	C	T	C	Hoxa9_MA0594.1	0	1	+	9.506381912457487	6.961416567249218	CCAATAAATCT
chr14	64629293	64629294	chr14:64629294:A:G	rs78758411	A	G	A	Hoxa9_MA0594.1	3	1	+	9.285628926363104	6.303832498954245	CTTATAAATCA
chr14	64720341	64720342	chr14:64720342:T:C	rs142560945	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	64940281	64940282	chr14:64940282:C:T	rs2071566	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	64941790	64941791	chr14:64941791:G:A	rs2737844	G	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	65214622	65214623	chr14:65214623:G:C	rs55931761	G	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr14	65261692	65261693	chr14:65261693:T:G	rs60763125	T	G	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	65282489	65282490	chr14:65282490:G:A	rs555159957	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	65282492	65282493	chr14:65282493:T:A	rs1053605114	T	A	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	65302775	65302776	chr14:65302776:A:G	rs116640319	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	65302778	65302779	chr14:65302779:A:G	rs1281834205	A	G	a	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	65638045	65638046	chr14:65638046:A:G	rs61988016	A	G	A	Hoxa9_MA0594.1	4	1	-	11.39900822046537	4.49025344115015	GCAATAAATCA
chr14	66131266	66131267	chr14:66131267:G:A	rs17754686	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr14	66824467	66824468	chr14:66824468:T:C	rs3784075	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	67111261	67111262	chr14:67111262:A:G	rs72715376	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	67232198	67232199	chr14:67232199:A:G	rs10152002	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr14	67497970	67497971	chr14:67497971:T:A	rs12878807	T	A	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	67553742	67553743	chr14:67553743:G:A	rs59155762	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	67565646	67565647	chr14:67565647:C:G	rs72721039	C	G	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr14	67596859	67596860	chr14:67596860:A:C	rs11627686	A	C	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	67776870	67776871	chr14:67776871:G:A	rs12892221	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr14	68267967	68267968	chr14:68267968:A:G	rs56048833	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	68452207	68452208	chr14:68452208:T:C	rs115315291	T	C	T	Hoxa9_MA0594.1	10	1	-	7.727146254177281	1.0903732684245124	ACCCTAAATCA
chr14	68460824	68460825	chr14:68460825:G:A	rs1989974	G	A	G	Hoxa9_MA0594.1	1	1	-	7.440758349612847	6.549208588502451	CCAGTCAATCA
chr14	68599079	68599080	chr14:68599080:G:T	rs113419425	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	68599091	68599092	chr14:68599092:G:T	rs111879068	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr14	68682838	68682839	chr14:68682839:T:G	rs72729583	T	G	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	68749298	68749299	chr14:68749299:G:T	rs194754	G	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	68784835	68784836	chr14:68784836:G:T	rs116922491	G	T	G	Hoxa9_MA0594.1	0	1	-	8.219694000462	7.7775449085177994	CAAATCAATCA
chr14	68842410	68842411	chr14:68842411:C:T	rs72731585	C	T	c	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	68844196	68844197	chr14:68844197:A:G	chr14:68844197:A:G	A	G	a	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	69460241	69460242	chr14:69460242:G:A	rs11537776	G	A	G	Hoxa9_MA0594.1	9	1	-	9.196147443905666	6.571434225321426	GAAATAAATCA
chr14	69467893	69467894	chr14:69467894:A:G	rs77775838	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr14	69518780	69518781	chr14:69518781:G:A	rs4899298	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	69617714	69617715	chr14:69617715:C:G	rs117208445	C	G	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	69657989	69657990	chr14:69657990:C:T	rs567329204	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr14	69740122	69740123	chr14:69740123:C:T	rs10151549	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	69740123	69740124	chr14:69740124:G:A	rs61982072	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr14	69763367	69763368	chr14:69763368:A:C	rs12431918	A	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	69808865	69808866	chr14:69808866:C:T	rs17328	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	69849812	69849813	chr14:69849813:C:A	rs74886828	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	69849817	69849818	chr14:69849818:A:G	rs61983475	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	69926327	69926328	chr14:69926328:T:C	rs1276114	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr14	69928312	69928313	chr14:69928313:C:A	rs760509167	C	A	c	Hoxa9_MA0594.1	0	1	-	9.196147443905666	6.228145677919046	GAAATAAATCA
chr14	69937618	69937619	chr14:69937619:T:C	rs170568	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr14	69937624	69937625	chr14:69937625:C:T	rs10142550	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	69992037	69992038	chr14:69992038:G:C	rs227420	G	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	69992053	69992054	chr14:69992054:A:G	rs8022808	A	G	A	Hoxa9_MA0594.1	3	1	+	7.536004637837573	4.554208210428715	GCCATAACTCA
chr14	70018373	70018374	chr14:70018374:G:A	rs1020811	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	70098086	70098087	chr14:70098087:G:A	rs17175465	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	70255666	70255667	chr14:70255667:G:A	rs117981850	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	70422828	70422829	chr14:70422829:G:A	rs12589762	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	70713981	70713982	chr14:70713982:C:T	rs77347315	C	T	C	Hoxa9_MA0594.1	2	1	+	7.992188342502578	6.0718572593753555	GGCATAAATCT
chr14	70897337	70897338	chr14:70897338:A:T	rs79932897	A	T	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	70966604	70966605	chr14:70966605:T:C	rs2526877	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr14	71027802	71027803	chr14:71027803:G:A	rs985943907	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr14	71128263	71128264	chr14:71128264:T:C	rs221911	T	C	t	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	71128277	71128278	chr14:71128278:A:G	rs221910	A	G	A	Hoxa9_MA0594.1	8	1	-	8.431006454478752	1.5577184043788628	TCAATAAATCA
chr14	71150615	71150616	chr14:71150616:T:A	rs4902893	T	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	71214539	71214540	chr14:71214540:T:A	rs3742845	T	A	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr14	71372806	71372807	chr14:71372807:A:G	rs35468256	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	71970431	71970432	chr14:71970432:T:A	rs4899408	T	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr14	72595046	72595047	chr14:72595047:A:G	rs17118212	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr14	72595719	72595720	chr14:72595720:C:T	rs7492545	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr14	72597497	72597498	chr14:72597498:G:A	rs17180817	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr14	72597522	72597523	chr14:72597523:A:G	rs17180824	A	G	G	Hoxa9_MA0594.1	5	1	+	8.848095527589834	6.331951715793224	GACATAAATCT
chr14	72742188	72742189	chr14:72742189:G:T	rs61092718	G	T	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	72870065	72870066	chr14:72870066:T:C	rs17781667	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	72876209	72876210	chr14:72876210:G:A	rs17781679	G	A	G	Hoxa9_MA0594.1	10	1	-	9.503973926077597	10.497539281484224	GCCATCAATCC
chr14	73057595	73057596	chr14:73057596:C:A	rs74062639	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr14	73599565	73599566	chr14:73599566:G:A	rs61988863	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr14	74238648	74238649	chr14:74238649:C:T	rs1860714	C	T	C	Hoxa9_MA0594.1	0	1	-	8.417211793056513	7.552026280333961	GCAGTAAATCA
chr14	74555248	74555249	chr14:74555249:G:A	rs55927952	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	74872746	74872747	chr14:74872747:A:G	rs11851433	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	74881233	74881234	chr14:74881234:A:C	rs11623342	A	C	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	75230212	75230213	chr14:75230213:A:G	rs17103088	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr14	75230218	75230219	chr14:75230219:A:G	rs7146787	A	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	75409479	75409480	chr14:75409480:C:T	rs76601178	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr14	75521982	75521983	chr14:75521983:G:C	rs113995148	G	C	G	Hoxa9_MA0594.1	5	1	-	7.632183602891756	5.66945681376046	ACCATCAAACA
chr14	75648568	75648569	chr14:75648569:T:C	rs11159149	T	C	C	Hoxa9_MA0594.1	8	1	+	6.766981631017401	-0.10630641908248739	GCCATGCATCA
chr14	75751446	75751447	chr14:75751447:C:T	rs142806754	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr14	76542041	76542042	chr14:76542042:T:C	rs2543561	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	76542069	76542070	chr14:76542070:G:A	rs72733609	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr14	76542071	76542072	chr14:76542072:G:A	rs79758714	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr14	76706264	76706265	chr14:76706265:T:C	rs2362160	T	C	T	Hoxa9_MA0594.1	3	1	-	9.929418333235837	6.947621905826979	GCAATAAATCT
chr14	76724807	76724808	chr14:76724808:A:G	rs1861424	A	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	77055410	77055411	chr14:77055411:C:T	rs7142658	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr14	77070918	77070919	chr14:77070919:T:C	rs204980	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	77210497	77210498	chr14:77210498:T:A	rs12881255	T	A	T	Hoxa9_MA0594.1	3	1	-	11.050956304149539	4.208219661541851	GCCATAAATCT
chr14	77524705	77524706	chr14:77524706:G:C	rs58883103	G	C	C	Hoxa9_MA0594.1	9	1	-	6.837082112140813	0.03875115043996552	CCCATCCATCT
chr14	77526716	77526717	chr14:77526717:T:C	rs7145386	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	77562738	77562739	chr14:77562739:C:T	rs926115	C	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr14	77752941	77752942	chr14:77752942:T:G	rs7148078	T	G	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	77759767	77759768	chr14:77759768:G:C	rs4903638	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	78085044	78085045	chr14:78085045:C:T	rs12434803	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr14	78099701	78099702	chr14:78099702:T:A	rs99298	T	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	78243470	78243471	chr14:78243471:T:C	rs1882821	T	C	T	Hoxa9_MA0594.1	3	1	-	7.0122332387752895	4.030436811366433	GCCATCAAGCA
chr14	78346942	78346943	chr14:78346943:A:G	rs214023	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	78359265	78359266	chr14:78359266:C:T	rs111329320	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	78512138	78512139	chr14:78512139:T:C	rs10782463	T	C	C	Hoxa9_MA0594.1	7	1	-	7.541247136946303	0.6383134632433825	GCCATGAATCC
chr14	78753118	78753119	chr14:78753119:T:C	rs7149051	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	79060497	79060498	chr14:79060498:G:A	rs6574480	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr14	79418436	79418437	chr14:79418437:C:G	rs2574751	C	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr14	79420371	79420372	chr14:79420372:C:T	rs2597092	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr14	79736698	79736699	chr14:79736699:G:T	rs2024335	G	T	T	Hoxa9_MA0594.1	2	1	-	9.02967993770463	7.908141966790929	CCCATAAATAA
chr14	79911764	79911765	chr14:79911765:A:G	rs964690	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	79919834	79919835	chr14:79919835:A:G	rs75195817	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	79919850	79919851	chr14:79919851:A:C	chr14:79919851:A:C	A	C	A	Hoxa9_MA0594.1	10	1	+	10.652542986825011	8.189387744188851	CTCATCAATCA
chr14	79919850	79919851	chr14:79919851:A:T	rs8023088	A	T	A	Hoxa9_MA0594.1	10	1	+	10.652542986825011	9.182953099595478	CTCATCAATCA
chr14	80102502	80102503	chr14:80102503:T:C	rs116905095	T	C	T	Hoxa9_MA0594.1	3	1	-	6.982587615172259	4.000791187763402	GCCATCACTCA
chr14	80357077	80357078	chr14:80357078:A:G	rs12323686	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	80491579	80491580	chr14:80491580:C:T	rs935728	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	80674877	80674878	chr14:80674878:A:C	rs1992972	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	81269681	81269682	chr14:81269682:T:C	rs756289658	T	C	T	Hoxa9_MA0594.1	4	1	+	10.53382270774282	3.6250679284275993	ACAATAAATCA
chr14	81386946	81386947	chr14:81386947:G:A	rs1569011	G	A	A	Hoxa9_MA0594.1	1	1	-	8.702990986792262	7.811441225681866	CCCATCTATCA
chr14	81427519	81427520	chr14:81427520:C:T	rs75543769	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr14	81536779	81536780	chr14:81536780:A:G	rs1951609	A	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr14	81716085	81716086	chr14:81716086:A:G	rs1958218	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	82812860	82812861	chr14:82812861:T:A	rs12586497	T	A	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr14	82855229	82855230	chr14:82855230:G:C	rs12880614	G	C	G	Hoxa9_MA0594.1	2	1	-	7.700782005789437	1.176882018041097	GTCCTAAATCA
chr14	82861774	82861775	chr14:82861775:C:T	rs1242451	C	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	83280203	83280204	chr14:83280204:G:A	rs79258673	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr14	83780447	83780448	chr14:83780448:T:C	rs1958444	T	C	C	Hoxa9_MA0594.1	8	1	+	8.53481249235293	1.6615244422530402	GCCATGAATCT
chr14	83812403	83812404	chr14:83812404:A:C	rs8020604	A	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	83817060	83817061	chr14:83817061:C:T	rs1754370	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	83871517	83871518	chr14:83871518:T:C	rs17119169	T	C	C	Hoxa9_MA0594.1	6	1	-	8.34024025881841	1.5226394730627528	GGAATAAATCA
chr14	83873783	83873784	chr14:83873784:G:T	rs17119189	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr14	83963210	83963211	chr14:83963211:G:A	rs76134490	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	84008340	84008341	chr14:84008341:A:T	rs12433100	A	T	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr14	84095648	84095649	chr14:84095649:T:C	rs4551972	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	84490248	84490249	chr14:84490249:C:G	rs79664069	C	G	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr14	84546373	84546374	chr14:84546374:G:A	rs895889	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr14	84647221	84647222	chr14:84647222:C:T	rs17258240	C	T	C	Hoxa9_MA0594.1	5	1	+	8.74080400765128	6.320665000321591	ATCATCAATCT
chr14	85150598	85150599	chr14:85150599:T:C	rs74357947	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	85234505	85234506	chr14:85234506:A:G	rs61981021	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr14	85437226	85437227	chr14:85437227:G:A	rs61980151	G	A	G	Hoxa9_MA0594.1	1	1	-	7.8728260628999855	6.981276301789592	GCCATCAATTT
chr14	85437237	85437238	chr14:85437238:G:C	rs78555326	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr14	85443691	85443692	chr14:85443692:A:G	rs1289415	A	G	G	Hoxa9_MA0594.1	10	1	+	7.929248167365919	1.29247518161315	GCAATAAAACA
chr14	85520065	85520066	chr14:85520066:T:A	rs17710381	T	A	T	Hoxa9_MA0594.1	7	1	-	8.232403979495325	1.3294703057924049	CTCATTAATCA
chr14	85600003	85600004	chr14:85600004:T:C	rs11849429	T	C	T	Hoxa9_MA0594.1	10	1	-	8.477230437406968	1.8404574516541992	ACCATCAATTA
chr14	86243202	86243203	chr14:86243203:A:T	rs2149763	A	T	T	Hoxa9_MA0594.1	2	1	+	9.376001310570523	8.577208198357003	GCAATCAATCT
chr14	86405637	86405638	chr14:86405638:A:G	rs7153727	A	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	86405639	86405640	chr14:86405640:A:G	rs35504663	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	86463581	86463582	chr14:86463582:T:C	rs2022771	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	86539711	86539712	chr14:86539712:C:T	rs140152171	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	86539737	86539738	chr14:86539738:A:G	rs78044389	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	86693985	86693986	chr14:86693986:G:T	rs67484906	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr14	86756960	86756961	chr14:86756961:C:T	rs17797290	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	86873249	86873250	chr14:86873250:T:C	rs8020849	T	C	T	Hoxa9_MA0594.1	7	1	-	7.301113149517894	0.39817947581497304	GACATCAATCC
chr14	86912935	86912936	chr14:86912936:G:A	rs17187115	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr14	87309905	87309906	chr14:87309906:G:A	rs901007	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	87332761	87332762	chr14:87332762:G:C	rs2217111	G	C	G	Hoxa9_MA0594.1	9	1	-	8.702990986792262	1.9046600250914152	CCCATCTATCA
chr14	87483886	87483887	chr14:87483887:C:T	rs116890605	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr14	87786063	87786064	chr14:87786064:A:T	rs7153082	A	T	A	Hoxa9_MA0594.1	4	1	-	8.082954538162921	1.1741997588476998	TCCATAAATCT
chr14	87869545	87869546	chr14:87869546:T:C	rs1450697	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	87896556	87896557	chr14:87896557:A:G	rs189372503	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	87935984	87935985	chr14:87935985:A:G	rs2301120	A	G	A	Hoxa9_MA0594.1	10	1	+	8.497369115614307	1.8605961298615368	GCCATCAAACA
chr14	87967674	87967675	chr14:87967675:C:T	rs17687346	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	88080125	88080126	chr14:88080126:T:C	rs17203608	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr14	88209609	88209610	chr14:88209610:C:T	rs34966094	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr14	88348923	88348924	chr14:88348924:G:A	rs1955591	G	A	A	Hoxa9_MA0594.1	9	1	-	7.632183602891756	5.007470384307517	ACCATCAAACA
chr14	88385082	88385083	chr14:88385083:A:G	rs74071512	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	89226999	89227000	chr14:89227000:C:T	rs10134653	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr14	89239271	89239272	chr14:89239272:G:T	rs117767797	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	89253687	89253688	chr14:89253688:A:G	rs7152783	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr14	89256354	89256355	chr14:89256355:T:C	rs2001834	T	C	T	Hoxa9_MA0594.1	10	1	-	8.107577641616745	1.470804655863975	TTCATCAATCA
chr14	89279815	89279816	chr14:89279816:T:C	rs183028462	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	89319271	89319272	chr14:89319272:T:C	rs4899979	T	C	t	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	89399689	89399690	chr14:89399690:C:A	rs117366705	C	A	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr14	89644410	89644411	chr14:89644411:T:C	rs8015525	T	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr14	89886766	89886767	chr14:89886767:G:C	rs74852683	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr14	89889922	89889923	chr14:89889923:C:T	rs75594167	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr14	89900911	89900912	chr14:89900912:A:G	rs11852044	A	G	A	Hoxa9_MA0594.1	5	1	+	9.285628926363104	6.769485114566494	CTTATAAATCA
chr14	90140769	90140770	chr14:90140770:A:T	rs78143019	A	T	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	90337188	90337189	chr14:90337189:G:T	rs73320624	G	T	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr14	90382730	90382731	chr14:90382731:C:A	rs559146038	C	A	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr14	90382759	90382760	chr14:90382760:G:A	rs12147703	G	A	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr14	90798253	90798254	chr14:90798254:T:C	rs1286336	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr14	90840833	90840834	chr14:90840834:T:C	rs1286295	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	91109475	91109476	chr14:91109476:C:G	rs117763662	C	G	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	91114787	91114788	chr14:91114788:T:C	rs116725036	T	C	T	Hoxa9_MA0594.1	10	1	-	6.982587615172259	0.3458146294194897	GCCATCACTCA
chr14	91250383	91250384	chr14:91250384:C:G	rs73334692	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr14	91546153	91546154	chr14:91546154:G:A	rs115671934	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr14	92045798	92045799	chr14:92045799:A:G	rs11160037	A	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr14	92120195	92120196	chr14:92120196:A:G	rs1950810	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr14	92310480	92310481	chr14:92310481:C:T	rs941799	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr14	92465294	92465295	chr14:92465295:C:T	rs73339573	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr14	92472678	92472679	chr14:92472679:C:G	rs7400774	C	G	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr14	92678031	92678032	chr14:92678032:C:T	rs12892857	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr14	92849136	92849137	chr14:92849137:G:A	rs758915788	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	92914406	92914407	chr14:92914407:G:A	rs77881984	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	93223693	93223694	chr14:93223694:G:A	rs7148517	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	93301938	93301939	chr14:93301939:C:T	rs75146239	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr14	93301970	93301971	chr14:93301971:T:C	rs78104869	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr14	93466978	93466979	chr14:93466979:A:G	rs1242764	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	93534387	93534388	chr14:93534388:G:A	rs66755556	G	A	g	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	93760119	93760120	chr14:93760120:G:T	rs114477502	G	T	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	93800144	93800145	chr14:93800145:T:C	rs17129181	T	C	T	Hoxa9_MA0594.1	6	1	-	11.655360678656521	4.837759892900865	ACCATAAATCA
chr14	93889100	93889101	chr14:93889101:C:T	rs1570136	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr14	93889114	93889115	chr14:93889115:C:T	rs736396	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr14	93901949	93901950	chr14:93901950:T:C	rs8011835	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	93943210	93943211	chr14:93943211:T:C	rs78991601	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	94123434	94123435	chr14:94123435:A:G	rs147754439	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	94326742	94326743	chr14:94326743:A:C	chr14:94326743:A:C	A	C	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	94386458	94386459	chr14:94386459:T:C	rs75285293	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr14	94573960	94573961	chr14:94573961:T:C	rs8020637	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	94573974	94573975	chr14:94573975:T:C	rs61978289	T	C	T	Hoxa9_MA0594.1	7	1	-	9.95404143668966	3.051107762986741	GTAATCAATCA
chr14	94630661	94630662	chr14:94630662:G:A	rs554959872	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr14	94686775	94686776	chr14:94686776:T:C	rs742893	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr14	94844827	94844828	chr14:94844828:G:C	rs1243498	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	94875679	94875680	chr14:94875680:G:T	rs10140972	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	94894728	94894729	chr14:94894729:C:A	rs12435646	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	94954612	94954613	chr14:94954613:T:G	rs2789375	T	G	G	Hoxa9_MA0594.1	7	1	-	9.139216866859913	4.154675313318413	ACCATGAATCA
chr14	95034495	95034496	chr14:95034496:A:G	rs113786080	A	G	A	Hoxa9_MA0594.1	0	1	+	10.763810917546127	11.628996430268678	ATCATAAATCA
chr14	95221113	95221114	chr14:95221114:C:T	rs7142652	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr14	95413989	95413990	chr14:95413990:G:A	rs145834550	G	A	G	Hoxa9_MA0594.1	2	1	-	9.126027407570612	7.20569632444339	GCCATCTATCA
chr14	95433905	95433906	chr14:95433906:A:G	rs7152933	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr14	95449317	95449318	chr14:95449318:G:C	rs117361699	G	C	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	95525996	95525997	chr14:95525997:G:T	rs58193966	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr14	95543624	95543625	chr14:95543625:T:C	rs12050232	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr14	95567189	95567190	chr14:95567190:G:C	rs8011099	G	C	c	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	95616765	95616766	chr14:95616766:A:G	rs35427639	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	95617004	95617005	chr14:95617005:G:A	rs4905351	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	95617442	95617443	chr14:95617443:T:C	rs11850802	T	C	t	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	95834345	95834346	chr14:95834346:C:T	rs17191170	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr14	95834699	95834700	chr14:95834700:T:C	rs10146317	T	C	C	Hoxa9_MA0594.1	1	1	-	8.848095527589834	7.992188342502578	GACATAAATCT
chr14	95887786	95887787	chr14:95887787:G:A	rs34767699	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr14	95992949	95992950	chr14:95992950:G:A	rs10144116	G	A	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr14	96050114	96050115	chr14:96050115:G:T	rs34400506	G	T	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	96135246	96135247	chr14:96135247:T:C	rs4243714	T	C	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr14	96146271	96146272	chr14:96146272:G:A	rs72704813	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	96175917	96175918	chr14:96175918:T:C	rs7158485	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	96310259	96310260	chr14:96310260:G:A	rs3809424	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr14	96539130	96539131	chr14:96539131:G:A	rs77599703	G	A	G	Hoxa9_MA0594.1	0	1	+	8.417211793056513	7.552026280333961	GCAGTAAATCA
chr14	96637451	96637452	chr14:96637452:C:T	rs73357018	C	T	c	Hoxa9_MA0594.1	2	1	+	7.565650261440604	5.6453191783133825	GCCATAAAGCA
chr14	96637469	96637470	chr14:96637470:G:A	rs17094273	G	A	g	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	96705536	96705537	chr14:96705537:C:T	rs17310169	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr14	96748801	96748802	chr14:96748802:C:T	rs41443751	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr14	96882141	96882142	chr14:96882142:G:A	rs72711042	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr14	96953622	96953623	chr14:96953623:C:G	rs863084	C	G	C	Hoxa9_MA0594.1	5	1	+	10.422554777021706	8.45982798789041	CCAATCAATCA
chr14	97403167	97403168	chr14:97403168:A:G	rs117086746	A	G	A	Hoxa9_MA0594.1	8	1	-	7.415122238259951	0.5418341881600619	CTCATCCATCA
chr14	97769469	97769470	chr14:97769470:A:T	rs74440278	A	T	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr14	97769510	97769511	chr14:97769511:G:A	rs12436797	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr14	98017234	98017235	chr14:98017235:A:T	rs74079838	A	T	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr14	98087918	98087919	chr14:98087919:C:T	rs10150247	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr14	98170783	98170784	chr14:98170784:A:C	rs7159904	A	C	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr14	98170786	98170787	chr14:98170787:G:A	rs7160371	G	A	g	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr14	98212940	98212941	chr14:98212941:T:C	rs112893044	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	98792088	98792089	chr14:98792089:C:A	rs2236049	C	A	A	Hoxa9_MA0594.1	2	1	+	8.476262915039317	7.354724944125614	CCCATCAATAA
chr14	99120414	99120415	chr14:99120415:A:G	rs140837773	A	G	A	Hoxa9_MA0594.1	3	1	+	9.45271635848298	6.470919931074123	GCCATAAATAA
chr14	99147181	99147182	chr14:99147182:C:T	rs78218943	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	99272795	99272796	chr14:99272796:A:G	rs75136861	A	G	A	Hoxa9_MA0594.1	4	1	-	8.18560062555707	1.2768458462418502	ACCATAAAACA
chr14	99324828	99324829	chr14:99324829:C:T	rs67846882	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	99361935	99361936	chr14:99361936:C:T	rs191290941	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr14	99563680	99563681	chr14:99563681:G:A	rs72706331	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr14	99766926	99766927	chr14:99766927:A:G	rs1007226453	A	G	A	Hoxa9_MA0594.1	7	1	+	7.608170449234994	0.7052367755320748	GCAATCCATCA
chr14	99871558	99871559	chr14:99871559:C:T	rs57128473	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	99875083	99875084	chr14:99875084:C:T	rs79232945	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr14	99875096	99875097	chr14:99875097:A:C	rs7152170	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	99953901	99953902	chr14:99953902:C:T	rs4905925	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	100066301	100066302	chr14:100066302:G:A	rs1190957	G	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr14	100372923	100372924	chr14:100372924:G:T	rs3783347	G	T	G	Hoxa9_MA0594.1	9	1	-	9.08885592396711	6.021026091071018	ATAATCAATCA
chr14	100447328	100447329	chr14:100447329:A:T	rs1203548	A	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr14	100610500	100610501	chr14:100610501:C:T	rs138037364	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	100610501	100610502	chr14:100610502:G:A	rs732565	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr14	100653135	100653136	chr14:100653136:T:C	rs12880207	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr14	100671046	100671047	chr14:100671047:T:C	rs7144375	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	100676552	100676553	chr14:100676553:G:A	rs730570	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr14	100872736	100872737	chr14:100872737:A:G	rs34811541	A	G	G	Hoxa9_MA0594.1	4	1	-	8.16158747190031	1.252832692585089	GCAATACATCA
chr14	100903443	100903444	chr14:100903444:G:T	rs143675300	G	T	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr14	101009561	101009562	chr14:101009562:A:G	rs72700559	A	G	A	Hoxa9_MA0594.1	2	1	+	7.608170449234994	2.2058084324003575	GCAATCCATCA
chr14	101114090	101114091	chr14:101114091:C:T	rs146471627	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	101120555	101120556	chr14:101120556:T:C	rs3742413	T	C	T	Hoxa9_MA0594.1	10	1	-	9.708665347141455	3.071892361388686	GTTATAAATCA
chr14	101137052	101137053	chr14:101137053:T:C	rs7493865	T	C	t	Hoxa9_MA0594.1	7	1	-	9.15524832447614	2.252314650773221	GTTATCAATCA
chr14	101197241	101197242	chr14:101197242:C:A	rs74081813	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	101365027	101365028	chr14:101365028:C:T	rs117853011	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr14	101444288	101444289	chr14:101444289:C:T	rs371360272	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	101444440	101444441	chr14:101444441:C:T	rs8019453	C	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr14	101489823	101489824	chr14:101489824:C:T	rs7156966	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr14	101495330	101495331	chr14:101495331:A:G	rs11623903	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr14	101577552	101577553	chr14:101577553:G:T	rs28535888	G	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr14	101599183	101599184	chr14:101599184:A:G	rs977968426	A	G	-	Hoxa9_MA0594.1	18	0	+	0	0	.
chr14	101839724	101839725	chr14:101839725:C:G	rs2896431	C	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr14	101933510	101933511	chr14:101933511:C:T	rs140084989	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr14	102125120	102125121	chr14:102125121:A:C	rs1190600	A	C	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	102362168	102362169	chr14:102362169:T:C	rs7152157	T	C	T	Hoxa9_MA0594.1	3	1	-	9.139216866859913	6.157420439451053	ACCATGAATCA
chr14	102583805	102583806	chr14:102583806:C:G	rs8003309	C	G	g	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr14	103162580	103162581	chr14:103162581:A:T	rs10149137	A	T	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr14	103198927	103198928	chr14:103198928:T:A	rs111621217	T	A	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr14	103213465	103213466	chr14:103213466:T:C	rs74886393	T	C	T	Hoxa9_MA0594.1	8	1	+	9.679444430235927	2.8061563801360383	GCCATATATCA
chr14	103376312	103376313	chr14:103376313:A:G	rs8013228	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr14	104012174	104012175	chr14:104012175:C:T	rs138368660	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr14	104132611	104132612	chr14:104132612:G:A	rs7157281	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr14	104320706	104320707	chr14:104320707:T:C	rs61997110	T	C	C	Hoxa9_MA0594.1	9	1	-	8.899299335817666	5.168798207012911	GCCATCAATAA
chr14	104321218	104321219	chr14:104321219:A:G	chr14:104321219:A:G	A	G	A	Hoxa9_MA0594.1	3	1	+	8.93585297782921	5.9540565504203515	GCAATAAATCC
chr14	104368055	104368056	chr14:104368056:T:C	rs56273236	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr14	104517628	104517629	chr14:104517629:G:A	rs56166764	G	A	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr14	104532015	104532016	chr14:104532016:C:T	rs10137728	C	T	c	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr14	104561600	104561601	chr14:104561601:G:C	rs4247024	G	C	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	104690072	104690073	chr14:104690073:G:A	rs3922890	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr14	104749781	104749782	chr14:104749782:A:T	rs112760543	A	T	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr14	104859911	104859912	chr14:104859912:C:T	rs145860637	C	T	-	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	104860863	104860864	chr14:104860864:C:A	rs72700143	C	A	-	Hoxa9_MA0594.1	16	0	+	0	0	.
chr14	105024008	105024009	chr14:105024009:C:T	rs56756098	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr14	105082849	105082850	chr14:105082850:C:T	rs78333034	C	T	-	Hoxa9_MA0594.1	6	1	+	7.260118532919163	7.656437520341079	GCCATCCATCT
chr14	105286062	105286063	chr14:105286063:C:T	rs190759410	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr14	105286066	105286067	chr14:105286067:T:C	rs3825762	T	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr14	105690277	105690278	chr14:105690278:C:T	rs111068175	C	T	.	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr14	105717462	105717463	chr14:105717463:G:A	rs74093815	G	A	.	Hoxa9_MA0594.1	14	0	-	0	0	.
chr14	105733241	105733242	chr14:105733242:A:G	rs11628672	A	G	.	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr14	105823968	105823969	chr14:105823969:A:G	rs10150506	A	G	.	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	106063216	106063217	chr14:106063217:G:A	chr14:106063217:G:A	G	A	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr14	106070152	106070153	chr14:106070153:G:A	rs60460963	G	A	.	Hoxa9_MA0594.1	29	0	+	0	0	.
chr14	106203137	106203138	chr14:106203138:G:A	rs55938820	G	A	.	Hoxa9_MA0594.1	28	0	+	0	0	.
chr14	106222720	106222721	chr14:106222721:C:T	rs1220586492	C	T	.	Hoxa9_MA0594.1	13	0	+	0	0	.
chr14	106276298	106276299	chr14:106276299:T:C	rs112954437	T	C	.	Hoxa9_MA0594.1	21	0	-	0	0	.
chr14	106373821	106373822	chr14:106373822:C:G	rs587742910	C	G	c	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr14	106418177	106418178	chr14:106418178:A:C	rs2106002	A	C	N	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr14	106540114	106540115	chr14:106540115:A:G	rs1360720295	A	G	N	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr14	106650017	106650018	chr14:106650018:T:C	rs11628292	T	C	t	Hoxa9_MA0594.1	11	0	-	0	0	.
chr14	106708648	106708649	chr14:106708649:T:A	rs7143287	T	A	.	Hoxa9_MA0594.1	5	1	-	8.34024025881841	5.366684228823407	GGAATAAATCA
chr15	20284899	20284900	chr15:20284900:C:G	rs112584522	C	G	c	Hoxa9_MA0594.1	9	1	+	6.837082112140813	0.03875115043996552	CCCATCCATCT
chr15	20311267	20311268	chr15:20311268:A:C	rs111317500	A	C	N	Hoxa9_MA0594.1	19	0	-	0	0	.
chr15	20388323	20388324	chr15:20388324:C:A	rs6599979	C	A	.	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	20388350	20388351	chr15:20388351:T:C	rs559677422	T	C	.	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	20439267	20439268	chr15:20439268:G:A	rs56232550	G	A	.	Hoxa9_MA0594.1	5	1	-	6.982587615172259	4.562448607842572	GCCATCACTCA
chr15	20648657	20648658	chr15:20648658:A:T	rs7182262	A	T	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	21264846	21264847	chr15:21264847:C:G	rs111640835	C	G	.	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	22221128	22221129	chr15:22221129:C:T	rs144178381	C	T	c	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	22221145	22221146	chr15:22221146:T:G	rs147777087	T	G	t	Hoxa9_MA0594.1	5	1	-	9.506381912457487	8.952964889792172	CCAATAAATCT
chr15	22224422	22224423	chr15:22224423:T:C	rs199825854	T	C	N	Hoxa9_MA0594.1	3	1	-	9.503973926077597	6.52217749866874	GCCATCAATCC
chr15	22242570	22242571	chr15:22242571:C:T	rs11854879	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	22253499	22253500	chr15:22253500:G:A	rs7496774	G	A	G	Hoxa9_MA0594.1	10	1	-	10.057390948742912	11.050956304149539	GCCATAAATCC
chr15	22964675	22964676	chr15:22964676:T:C	rs7403282	T	C	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	23474681	23474682	chr15:23474682:C:T	rs8027906	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr15	23803801	23803802	chr15:23803802:A:G	rs117902846	A	G	A	Hoxa9_MA0594.1	3	1	+	9.037868572125442	6.056072144716582	GTAATAAATCT
chr15	24624217	24624218	chr15:24624218:T:C	rs28693782	T	C	C	Hoxa9_MA0594.1	4	1	+	8.33117838756928	1.422423608254059	GCAATAAATAA
chr15	24977156	24977157	chr15:24977157:C:A	rs2732020	C	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr15	25477171	25477172	chr15:25477172:G:A	rs61999011	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr15	25566640	25566641	chr15:25566641:T:C	rs2526565	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr15	25587821	25587822	chr15:25587822:G:A	rs114028837	G	A	g	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	26156882	26156883	chr15:26156883:C:T	rs1435837	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr15	26720649	26720650	chr15:26720650:C:G	rs12592816	C	G	C	Hoxa9_MA0594.1	5	1	-	8.689816197693718	10.652542986825011	CTCATGAATCA
chr15	27421615	27421616	chr15:27421616:C:G	rs111533505	C	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr15	27426944	27426945	chr15:27426945:C:T	rs10152507	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	27427116	27427117	chr15:27427117:A:G	rs74006937	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr15	27562006	27562007	chr15:27562007:T:C	rs3098518	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	28274122	28274123	chr15:28274123:G:A	rs16950972	G	A	.	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	28714285	28714286	chr15:28714286:G:T	rs1400235762	G	T	g	Hoxa9_MA0594.1	1	1	-	8.134870038543875	5.9320092619841684	CCAATATATCA
chr15	28794469	28794470	chr15:28794470:C:T	rs186596452	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr15	28949119	28949120	chr15:28949120:T:G	rs911356261	T	G	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr15	29044389	29044390	chr15:29044390:G:C	rs76916572	G	C	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr15	29159409	29159410	chr15:29159410:T:C	rs12911169	T	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	29390301	29390302	chr15:29390302:G:A	rs17749882	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	29551074	29551075	chr15:29551075:T:C	rs8029633	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	29551100	29551101	chr15:29551101:A:G	rs36004058	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr15	29917900	29917901	chr15:29917901:T:C	rs12594438	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr15	30065195	30065196	chr15:30065196:A:G	rs116577297	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	30658872	30658873	chr15:30658873:T:G	rs62014603	T	G	.	Hoxa9_MA0594.1	6	1	-	8.655440400273676	5.418019651708613	GTCATTAATCA
chr15	30929289	30929290	chr15:30929290:C:T	rs80120912	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr15	31024006	31024007	chr15:31024007:T:C	rs7182271	T	C	T	Hoxa9_MA0594.1	7	1	-	9.123953740605721	2.2210200669028004	CCCATTAATCA
chr15	31113796	31113797	chr15:31113797:C:G	rs2338855	C	G	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr15	31113802	31113803	chr15:31113803:T:C	rs2338854	T	C	t	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	31352728	31352729	chr15:31352729:G:C	rs1807100	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	31404732	31404733	chr15:31404733:C:T	rs12441765	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr15	31462228	31462229	chr15:31462229:T:G	rs75885475	T	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr15	31471405	31471406	chr15:31471406:T:G	rs11071075	T	G	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	32097866	32097867	chr15:32097867:G:T	rs4779565	G	T	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	32888562	32888563	chr15:32888563:C:T	rs347938	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr15	32893664	32893665	chr15:32893665:C:A	rs77647799	C	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	32926657	32926658	chr15:32926658:T:C	rs17228971	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr15	32992033	32992034	chr15:32992034:C:T	rs116093817	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	33126882	33126883	chr15:33126883:T:G	rs78434460	T	G	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	33126889	33126890	chr15:33126890:A:G	rs372495693	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr15	33347766	33347767	chr15:33347767:C:A	rs7183038	C	A	a	Hoxa9_MA0594.1	13	0	+	0	0	.
chr15	33592951	33592952	chr15:33592952:A:G	rs584877	A	G	A	Hoxa9_MA0594.1	3	1	+	9.764268392154055	6.782471964745194	GACATCAATCA
chr15	33714572	33714573	chr15:33714573:C:T	rs8025855	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	33883038	33883039	chr15:33883039:A:C	rs7172206	A	C	C	Hoxa9_MA0594.1	5	1	+	8.18560062555707	7.632183602891756	ACCATAAAACA
chr15	34049289	34049290	chr15:34049290:A:G	rs539584	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr15	34049308	34049309	chr15:34049309:G:A	rs587714	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	34320557	34320558	chr15:34320558:C:T	rs17236840	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	34524446	34524447	chr15:34524447:C:T	rs72625171	C	T	.	Hoxa9_MA0594.1	21	0	+	0	0	.
chr15	34787361	34787362	chr15:34787362:T:C	rs61566756	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr15	35628320	35628321	chr15:35628321:T:G	rs34883515	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	35658342	35658343	chr15:35658343:C:A	rs76177164	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	35675631	35675632	chr15:35675632:G:T	rs7163994	G	T	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr15	35697689	35697690	chr15:35697690:C:T	rs4304979	C	T	C	Hoxa9_MA0594.1	1	1	+	8.074332694835956	7.18278293372556	CCCATCAAACA
chr15	36079225	36079226	chr15:36079226:G:A	rs789869	G	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	36256686	36256687	chr15:36256687:T:C	rs16962759	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr15	36401839	36401840	chr15:36401840:G:A	rs12324745	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr15	36577917	36577918	chr15:36577918:C:T	rs4924084	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr15	36595723	36595724	chr15:36595724:G:A	rs191585596	G	A	g	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr15	36654712	36654713	chr15:36654713:C:T	rs10518897	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	36752920	36752921	chr15:36752921:G:A	rs12440276	G	A	G	Hoxa9_MA0594.1	1	1	-	10.074502860705875	9.182953099595478	CCCATCAATCT
chr15	36764000	36764001	chr15:36764001:C:G	rs2839754	C	G	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr15	36841171	36841172	chr15:36841172:T:G	rs7181636	T	G	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr15	36845428	36845429	chr15:36845429:C:T	rs79538091	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr15	37080418	37080419	chr15:37080419:G:T	rs762516369	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr15	37098733	37098734	chr15:37098734:C:A	rs1026423226	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr15	37123614	37123615	chr15:37123615:C:T	rs16964687	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr15	37199803	37199804	chr15:37199804:A:G	rs34474110	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	37372995	37372996	chr15:37372996:C:T	rs596347	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	37818502	37818503	chr15:37818503:C:T	rs182143281	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	37880320	37880321	chr15:37880321:T:G	chr15:37880321:T:G	T	G	T	Hoxa9_MA0594.1	6	1	-	8.655440400273676	5.418019651708613	GTCATTAATCA
chr15	38075419	38075420	chr15:38075420:T:C	rs1039458	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	38149544	38149545	chr15:38149545:G:A	rs10744968	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr15	38187233	38187234	chr15:38187234:T:C	rs55810958	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr15	38298276	38298277	chr15:38298277:A:G	rs79078858	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr15	38373962	38373963	chr15:38373963:C:A	rs11631337	C	A	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	38494168	38494169	chr15:38494169:G:C	rs34059658	G	C	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr15	38860233	38860234	chr15:38860234:T:A	rs11633114	T	A	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr15	38902576	38902577	chr15:38902577:G:A	rs11073362	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	38907605	38907606	chr15:38907606:C:G	rs7175727	C	G	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr15	38928583	38928584	chr15:38928584:C:G	rs8035861	C	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr15	38941739	38941740	chr15:38941740:C:T	rs1433878	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr15	38941787	38941788	chr15:38941788:C:G	rs75276651	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr15	39023612	39023613	chr15:39023613:C:G	rs973931	C	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	39083549	39083550	chr15:39083550:A:G	rs6492858	A	G	G	Hoxa9_MA0594.1	0	1	+	8.29006281175359	9.15524832447614	ATTATCAATCA
chr15	39140570	39140571	chr15:39140571:T:G	rs77980869	T	G	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr15	39364975	39364976	chr15:39364976:G:A	rs55948686	G	A	G	Hoxa9_MA0594.1	0	1	-	8.476262915039317	5.931297569831049	CCCATCAATAA
chr15	39368083	39368084	chr15:39368084:A:G	rs878728	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr15	39657956	39657957	chr15:39657957:A:G	rs34878675	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr15	39657965	39657966	chr15:39657966:G:A	rs114965515	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	39657975	39657976	chr15:39657976:G:A	rs73393260	G	A	G	Hoxa9_MA0594.1	6	1	-	8.729708420148697	9.126027407570612	GCCATCCATCA
chr15	39691662	39691663	chr15:39691663:C:T	rs2129458	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	39843652	39843653	chr15:39843653:G:A	rs440383	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr15	39888732	39888733	chr15:39888733:T:C	rs16969970	T	C	T	Hoxa9_MA0594.1	4	1	+	8.189387744188851	1.280632964873632	CTCATCAATCC
chr15	39970262	39970263	chr15:39970263:A:G	rs17721366	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr15	40021989	40021990	chr15:40021990:A:G	rs11635537	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	40087058	40087059	chr15:40087059:C:A	rs546220	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr15	40092566	40092567	chr15:40092567:C:T	rs80056127	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	40112696	40112697	chr15:40112697:G:T	rs62019961	G	T	G	Hoxa9_MA0594.1	1	1	-	12.097509770600722	9.894648994041017	CCCATAAATCA
chr15	40423796	40423797	chr15:40423797:G:A	rs72733444	G	A	G	Hoxa9_MA0594.1	2	1	-	11.205960009490326	9.285628926363104	CTCATAAATCA
chr15	40568719	40568720	chr15:40568720:C:G	rs10851396	C	G	C	Hoxa9_MA0594.1	9	1	+	7.216289187599767	0.4179582258989194	GCCATATATCC
chr15	40942380	40942381	chr15:40942381:C:T	rs151031911	C	T	c	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	40942393	40942394	chr15:40942394:T:C	rs115633904	T	C	a	Hoxa9_MA0594.1	3	1	-	7.1129682170592226	4.131171789650365	CCCATAACTCA
chr15	41558579	41558580	chr15:41558580:G:C	rs79051113	G	C	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	41839766	41839767	chr15:41839767:A:G	rs57498313	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr15	41919917	41919918	chr15:41919918:C:T	rs1648821	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	41972753	41972754	chr15:41972754:G:A	rs112854755	G	A	G	Hoxa9_MA0594.1	2	1	-	8.007749574707272	6.087418491580049	GTCATCAATAA
chr15	42027338	42027339	chr15:42027339:C:T	rs2665205	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr15	42031392	42031393	chr15:42031393:G:T	rs7496336	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr15	42031400	42031401	chr15:42031401:T:C	rs28422161	T	C	T	Hoxa9_MA0594.1	7	1	-	8.899082879431504	1.996149205728583	AACATCAATCA
chr15	42046496	42046497	chr15:42046497:A:G	rs11070356	A	G	A	Hoxa9_MA0594.1	7	1	+	10.497539281484224	3.5946056077813044	GCCATCAATCT
chr15	42046519	42046520	chr15:42046520:G:A	rs72727719	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	42056602	42056603	chr15:42056603:C:A	rs776694	C	A	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	42101986	42101987	chr15:42101987:T:C	rs77512125	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	42228211	42228212	chr15:42228212:A:G	rs72718869	A	G	A	Hoxa9_MA0594.1	3	1	+	10.763810917546127	7.782014490137268	ATCATAAATCA
chr15	42407822	42407823	chr15:42407823:T:C	rs28364525	T	C	T	Hoxa9_MA0594.1	5	1	+	8.232403979495325	10.652542986825011	CTCATTAATCA
chr15	42721748	42721749	chr15:42721749:C:T	rs66681258	C	T	c	Hoxa9_MA0594.1	0	1	-	7.541247136946303	6.6760616242237525	GCCATGAATCC
chr15	42723213	42723214	chr15:42723214:A:T	rs75173268	A	T	-	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	42723221	42723222	chr15:42723222:C:A	rs187883109	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	44081688	44081689	chr15:44081689:A:G	rs12903579	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	44195568	44195569	chr15:44195569:G:C	rs1036857875	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	45167331	45167332	chr15:45167332:G:A	rs898725462	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr15	45199476	45199477	chr15:45199477:A:G	rs182824957	A	G	A	Hoxa9_MA0594.1	7	1	+	9.080937505299248	2.1780038315963273	CCCATCAATCC
chr15	45307171	45307172	chr15:45307172:A:C	rs2461711	A	C	A	Hoxa9_MA0594.1	6	1	+	8.4262430855653	5.188822337000239	GCCATAAATTT
chr15	45377940	45377941	chr15:45377941:C:T	rs80066230	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr15	45798784	45798785	chr15:45798785:G:A	rs2460629	G	A	G	Hoxa9_MA0594.1	0	1	-	8.351258581102782	5.806293235894513	CCAATAAATTA
chr15	45862137	45862138	chr15:45862138:G:C	rs117437423	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr15	45912893	45912894	chr15:45912894:T:A	rs16948973	T	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	46014737	46014738	chr15:46014738:G:A	rs947600807	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr15	47196271	47196272	chr15:47196272:A:G	rs76128746	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	47721515	47721516	chr15:47721516:C:A	rs1439320	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	48006051	48006052	chr15:48006052:T:C	rs1030399	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr15	48249906	48249907	chr15:48249907:G:A	rs2279367	G	A	G	Hoxa9_MA0594.1	0	1	+	8.774295001881132	7.909109489158581	GCAATAAATTA
chr15	48407731	48407732	chr15:48407732:T:C	rs2114438	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	48666765	48666766	chr15:48666766:C:T	rs73398311	C	T	c	Hoxa9_MA0594.1	15	0	-	0	0	.
chr15	48697646	48697647	chr15:48697647:G:T	rs1478346	G	T	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	48928913	48928914	chr15:48928914:T:A	rs11638254	T	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	49083127	49083128	chr15:49083128:T:C	rs2413931	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr15	49383110	49383111	chr15:49383111:T:C	rs12901929	T	C	T	Hoxa9_MA0594.1	3	1	-	7.185134028456644	4.203337601047785	CCAATCCATCA
chr15	49468227	49468228	chr15:49468228:G:T	rs2413959	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr15	49469790	49469791	chr15:49469791:A:T	rs9972565	A	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	49758987	49758988	chr15:49758988:T:C	rs74014156	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr15	49826927	49826928	chr15:49826928:C:T	rs4393520	C	T	C	Hoxa9_MA0594.1	0	1	+	9.581365958804113	7.036400613595844	CCCATGAATCA
chr15	50065545	50065546	chr15:50065546:G:T	rs7172615	G	T	G	Hoxa9_MA0594.1	2	1	-	9.552544425392455	8.431006454478752	TCCATAAATCA
chr15	50183224	50183225	chr15:50183225:C:T	rs2052759	C	T	C	Hoxa9_MA0594.1	2	1	+	7.656437520341079	5.736106437213857	GCCATCTATCT
chr15	50356513	50356514	chr15:50356514:G:T	rs953159	G	T	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr15	50876819	50876820	chr15:50876820:G:T	rs8031492	G	T	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr15	50922728	50922729	chr15:50922729:T:C	rs17521467	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	51004571	51004572	chr15:51004572:T:C	rs28456256	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	51183454	51183455	chr15:51183455:T:G	rs62020072	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	51218504	51218505	chr15:51218505:T:A	rs1143704	T	A	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr15	51323418	51323419	chr15:51323419:T:C	rs2445761	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr15	51332918	51332919	chr15:51332919:T:G	rs2470169	T	G	.	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	51349549	51349550	chr15:51349550:T:C	rs7167696	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	51404224	51404225	chr15:51404225:T:G	rs2459399	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr15	51602072	51602073	chr15:51602073:A:T	rs11070861	A	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	51829258	51829259	chr15:51829259:T:C	rs150107066	T	C	T	Hoxa9_MA0594.1	5	1	-	9.461778229732111	6.945634417935501	GGCATAAATCA
chr15	51831618	51831619	chr15:51831619:G:A	rs6493525	G	A	G	Hoxa9_MA0594.1	1	1	-	9.342415950129519	8.450866189019125	GCCATCAATTA
chr15	52232460	52232461	chr15:52232461:T:C	rs138128763	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr15	52257934	52257935	chr15:52257935:G:A	rs116951989	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	52257942	52257943	chr15:52257943:T:C	rs4257157	T	C	T	Hoxa9_MA0594.1	3	1	-	8.08407129645524	5.102274869046382	GCTATGAATCA
chr15	52287141	52287142	chr15:52287142:G:C	chr15:52287142:G:C	G	C	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	52409229	52409230	chr15:52409230:C:T	rs1724629	C	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr15	52417647	52417648	chr15:52417648:C:G	rs1464964	C	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	52417679	52417680	chr15:52417680:G:A	rs871488	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	52785242	52785243	chr15:52785243:G:T	rs75657740	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr15	52871584	52871585	chr15:52871585:A:C	rs7161750	A	C	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	53563855	53563856	chr15:53563856:T:C	rs181684184	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	53820070	53820071	chr15:53820071:T:C	rs690192	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr15	53930161	53930162	chr15:53930162:C:A	rs2725553	C	A	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	53974552	53974553	chr15:53974553:G:T	rs17731753	G	T	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr15	54150529	54150530	chr15:54150530:G:A	rs8038718	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr15	54428842	54428843	chr15:54428843:G:A	rs6493681	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr15	54547708	54547709	chr15:54547709:T:C	rs75215111	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr15	54576469	54576470	chr15:54576470:G:T	rs2553218	G	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr15	55109245	55109246	chr15:55109246:A:C	rs77699560	A	C	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	55170345	55170346	chr15:55170346:T:C	rs7172575	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr15	55170364	55170365	chr15:55170365:A:C	rs73405895	A	C	C	Hoxa9_MA0594.1	6	1	+	8.73221190369779	5.494791155132728	CTTATCAATCA
chr15	55907900	55907901	chr15:55907901:G:T	rs16976645	G	T	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr15	55986962	55986963	chr15:55986963:T:C	rs7179050	T	C	-	Hoxa9_MA0594.1	6	1	-	9.7350295955293	2.917428809773643	ACTATAAATCA
chr15	56371708	56371709	chr15:56371709:C:T	rs7174976	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	56568112	56568113	chr15:56568113:A:G	rs2676206	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	56737222	56737223	chr15:56737223:A:T	rs147071122	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr15	56795800	56795801	chr15:56795801:G:A	rs12324492	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	56798798	56798799	chr15:56798799:A:G	rs193160343	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr15	57026398	57026399	chr15:57026399:A:G	rs75858506	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	57026404	57026405	chr15:57026405:C:T	rs116525341	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	57204078	57204079	chr15:57204079:T:C	rs9672676	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	57220569	57220570	chr15:57220570:A:T	rs111494885	A	T	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr15	57327912	57327913	chr15:57327913:A:G	rs4774256	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	57423849	57423850	chr15:57423850:G:A	rs1614202	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr15	57517055	57517056	chr15:57517056:A:G	rs16977563	A	G	a	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	57544078	57544079	chr15:57544079:A:G	rs1623697	A	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	57582274	57582275	chr15:57582275:T:C	rs2172608	T	C	T	Hoxa9_MA0594.1	7	1	-	8.232403979495325	1.3294703057924049	CTCATTAATCA
chr15	57582295	57582296	chr15:57582296:C:T	rs2172609	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr15	57648063	57648064	chr15:57648064:T:C	rs2042698	T	C	C	Hoxa9_MA0594.1	2	1	-	10.53382270774282	5.131460690908183	ACAATAAATCA
chr15	57785237	57785238	chr15:57785238:T:A	rs527867	T	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr15	57982790	57982791	chr15:57982791:G:A	rs4646609	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	57993189	57993190	chr15:57993190:C:A	rs4646607	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	58222042	58222043	chr15:58222043:C:T	rs1663255	C	T	C	Hoxa9_MA0594.1	9	1	+	9.064232820513286	6.439519601929048	ACAATAAATCT
chr15	58240307	58240308	chr15:58240308:T:C	rs11632498	T	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr15	58285335	58285336	chr15:58285336:G:A	rs17240706	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	58307565	58307566	chr15:58307566:C:T	rs539816615	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	58340361	58340362	chr15:58340362:C:G	rs117703382	C	G	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	58355080	58355081	chr15:58355081:C:G	rs79924751	C	G	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr15	58391165	58391166	chr15:58391166:C:T	rs77913595	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	58669034	58669035	chr15:58669035:C:T	rs6494032	C	T	C	Hoxa9_MA0594.1	0	1	+	8.425059106811483	5.880093761603215	CACATAAATCT
chr15	58900393	58900394	chr15:58900394:A:G	rs4545744	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr15	58963085	58963086	chr15:58963086:C:T	rs191437665	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	59166012	59166013	chr15:59166013:G:T	rs10519001	G	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr15	59192182	59192183	chr15:59192183:G:A	rs532582517	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr15	59230098	59230099	chr15:59230099:T:A	rs7175876	T	A	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr15	59300670	59300671	chr15:59300671:C:T	rs148052770	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr15	59300673	59300674	chr15:59300674:G:C	rs567939673	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr15	59354416	59354417	chr15:59354417:C:A	rs139497982	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr15	59360513	59360514	chr15:59360514:A:G	chr15:59360514:A:G	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	59376972	59376973	chr15:59376973:A:C	rs112698574	A	C	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr15	59479950	59479951	chr15:59479951:G:A	rs60263751	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr15	59532153	59532154	chr15:59532154:G:A	rs7181403	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	59572305	59572306	chr15:59572306:A:G	rs17190923	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	59674449	59674450	chr15:59674450:T:A	rs7497974	T	A	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	60318695	60318696	chr15:60318696:T:C	rs11071516	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr15	60328982	60328983	chr15:60328983:G:A	rs112512305	G	A	G	Hoxa9_MA0594.1	1	1	-	7.529537515497607	6.63798775438721	TCCATCAATCT
chr15	60329002	60329003	chr15:60329003:G:C	rs17270104	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	60336686	60336687	chr15:60336687:T:C	rs67897916	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr15	60336705	60336706	chr15:60336706:A:G	rs10851676	A	G	G	Hoxa9_MA0594.1	6	1	+	7.173729231511967	0.35612844575631053	ACCCTCAATCA
chr15	60341842	60341843	chr15:60341843:A:G	rs7170089	A	G	G	Hoxa9_MA0594.1	4	1	-	9.256408009457576	2.347653230142356	CCCATATATCA
chr15	60371334	60371335	chr15:60371335:T:C	rs34073202	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr15	60391749	60391750	chr15:60391750:G:A	rs8023979	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr15	61034306	61034307	chr15:61034307:A:T	rs782961	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr15	61169704	61169705	chr15:61169705:T:C	rs951970388	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr15	61502513	61502514	chr15:61502514:A:G	rs35143677	A	G	a	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	61647720	61647721	chr15:61647721:T:C	rs139232701	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	61760006	61760007	chr15:61760007:G:A	rs12903441	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	61818730	61818731	chr15:61818731:A:G	rs10851701	A	G	A	Hoxa9_MA0594.1	7	1	+	8.952964889792172	2.0500312160892515	CCAATCAATCT
chr15	61872067	61872068	chr15:61872068:A:C	rs145106201	A	C	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr15	62085426	62085427	chr15:62085427:G:A	rs75074838	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	62404007	62404008	chr15:62404008:C:T	rs138175104	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr15	62464111	62464112	chr15:62464112:A:T	rs4775506	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr15	62717533	62717534	chr15:62717534:A:G	rs938983	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	62903572	62903573	chr15:62903573:C:T	rs7172773	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	62950631	62950632	chr15:62950632:C:T	rs1994533	C	T	C	Hoxa9_MA0594.1	9	1	+	6.982587615172259	4.35787439658802	GCCATCACTCA
chr15	62978378	62978379	chr15:62978379:G:C	rs111617361	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr15	62995453	62995454	chr15:62995454:G:A	rs115267876	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr15	63003921	63003922	chr15:63003922:C:T	rs16946240	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr15	63050350	63050351	chr15:63050351:T:G	rs76113767	T	G	T	Hoxa9_MA0594.1	6	1	-	8.074332694835956	4.836911946270894	CCCATCAAACA
chr15	63246703	63246704	chr15:63246704:A:G	rs76080506	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr15	63255718	63255719	chr15:63255719:C:T	rs140528015	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	63465398	63465399	chr15:63465399:A:G	rs12898472	A	G	a	Hoxa9_MA0594.1	7	1	+	8.497369115614307	1.5944354419113869	GCCATCAAACA
chr15	63488430	63488431	chr15:63488431:T:C	rs10519212	T	C	T	Hoxa9_MA0594.1	6	1	-	8.007749574707272	1.1901487889516147	GTCATCAATAA
chr15	63552545	63552546	chr15:63552546:A:G	rs17766277	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	63708175	63708176	chr15:63708176:C:A	rs145211343	C	A	C	Hoxa9_MA0594.1	1	1	+	7.929248167365919	5.726387390806213	GCAATAAAACA
chr15	63752255	63752256	chr15:63752256:T:C	rs144739879	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	63764455	63764456	chr15:63764456:C:T	rs117856030	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr15	63838742	63838743	chr15:63838743:T:C	rs7166249	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	63891959	63891960	chr15:63891960:T:A	rs73446579	T	A	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr15	63892162	63892163	chr15:63892163:C:T	rs6494449	C	T	C	Hoxa9_MA0594.1	0	1	+	7.118210716167953	4.573245370959683	CCCATGAATCC
chr15	64092279	64092280	chr15:64092280:T:G	rs74021251	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	64247152	64247153	chr15:64247153:A:C	rs117413567	A	C	A	Hoxa9_MA0594.1	10	1	-	8.082954538162921	2.915771439639686	TCCATAAATCT
chr15	64882598	64882599	chr15:64882599:C:T	rs541781618	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr15	64885026	64885027	chr15:64885027:T:A	rs1719266	T	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	65076210	65076211	chr15:65076211:G:A	rs115380287	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	65296055	65296056	chr15:65296056:C:G	rs144597304	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr15	65404492	65404493	chr15:65404493:A:G	rs117671897	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr15	66090197	66090198	chr15:66090198:C:T	rs140878933	C	T	C	Hoxa9_MA0594.1	2	1	+	9.165841187632518	7.2455101045052945	GTCATAAATCC
chr15	66503851	66503852	chr15:66503852:G:A	rs36116789	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	66835183	66835184	chr15:66835184:C:T	rs2414918	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr15	66883977	66883978	chr15:66883978:C:T	rs4776848	C	T	C	Hoxa9_MA0594.1	6	1	+	6.837082112140813	7.2334010995627285	CCCATCCATCT
chr15	66884001	66884002	chr15:66884002:A:G	rs4776849	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	66933646	66933647	chr15:66933647:C:A	rs266371	C	A	C	Hoxa9_MA0594.1	0	1	+	8.074332694835956	7.632183602891756	CCCATCAAACA
chr15	66961484	66961485	chr15:66961485:T:C	rs10518702	T	C	T	Hoxa9_MA0594.1	7	1	-	8.899082879431504	1.996149205728583	AACATCAATCA
chr15	66961508	66961509	chr15:66961509:C:G	rs444141	C	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr15	66976944	66976945	chr15:66976945:T:C	rs4776862	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	67125866	67125867	chr15:67125867:G:A	rs16950635	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	67146224	67146225	chr15:67146225:T:G	rs17227716	T	G	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr15	67150526	67150527	chr15:67150527:T:C	chr15:67150527:T:C	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	67207991	67207992	chr15:67207992:T:C	rs4776905	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	67208003	67208004	chr15:67208004:G:A	rs760505673	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	67571524	67571525	chr15:67571525:A:G	rs16951010	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr15	67785291	67785292	chr15:67785292:A:G	rs7175517	A	G	A	Hoxa9_MA0594.1	3	1	+	8.397354331692144	5.415557904283285	GATATAAATCA
chr15	67850727	67850728	chr15:67850728:C:G	rs73431978	C	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr15	67901610	67901611	chr15:67901611:C:T	rs7163687	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr15	68005618	68005619	chr15:68005619:G:A	rs1602089	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr15	68026690	68026691	chr15:68026691:T:C	rs138647405	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr15	68273078	68273079	chr15:68273079:A:G	rs114560020	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	68315001	68315002	chr15:68315002:T:C	rs367719634	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	68407511	68407512	chr15:68407512:G:T	rs77603163	G	T	G	Hoxa9_MA0594.1	9	1	-	9.60598952037383	6.538159687477739	GTCATCAATCT
chr15	68489340	68489341	chr15:68489341:G:A	rs3985632	G	A	G	Hoxa9_MA0594.1	1	1	-	7.864522907426146	6.97297314631575	ACCATCCATCA
chr15	68637912	68637913	chr15:68637913:A:C	chr15:68637913:A:C	A	C	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr15	69100052	69100053	chr15:69100053:G:A	rs4777114	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	69107215	69107216	chr15:69107216:T:C	rs12440912	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	69303602	69303603	chr15:69303603:G:A	rs36075075	G	A	-	Hoxa9_MA0594.1	23	0	+	0	0	.
chr15	69359497	69359498	chr15:69359498:G:A	rs11072090	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr15	69453754	69453755	chr15:69453755:G:A	chr15:69453755:G:A	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	69661216	69661217	chr15:69661217:T:A	rs8033244	T	A	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr15	69692253	69692254	chr15:69692254:C:T	rs4777179	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr15	69699774	69699775	chr15:69699775:T:C	rs10220831	T	C	C	Hoxa9_MA0594.1	6	1	-	8.093782980194504	1.276182194438848	GTCGTCAATCA
chr15	69751279	69751280	chr15:69751280:T:C	rs4777190	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	69758387	69758388	chr15:69758388:G:C	rs146798502	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	69805703	69805704	chr15:69805704:G:A	rs57594052	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr15	69851870	69851871	chr15:69851871:C:T	rs305006	C	T	C	Hoxa9_MA0594.1	0	1	-	7.838158659038301	6.97297314631575	GTCATCCATCA
chr15	69858111	69858112	chr15:69858112:T:G	rs379468	T	G	G	Hoxa9_MA0594.1	8	1	+	6.982587615172259	2.027691685233791	GCCATCACTCA
chr15	69909041	69909042	chr15:69909042:T:C	rs4776485	T	C	T	Hoxa9_MA0594.1	3	1	-	9.064232820513286	6.082436393104428	ACAATAAATCT
chr15	70061147	70061148	chr15:70061148:G:A	rs77426363	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	70149975	70149976	chr15:70149976:T:C	rs61999959	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	70227397	70227398	chr15:70227398:A:G	rs11072150	A	G	a	Hoxa9_MA0594.1	24	0	+	0	0	.
chr15	70230070	70230071	chr15:70230071:T:G	rs28611447	T	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	70309490	70309491	chr15:70309491:T:G	rs56219474	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	70569121	70569122	chr15:70569122:C:G	rs34325258	C	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	70575945	70575946	chr15:70575946:G:A	rs1896437	G	A	A	Hoxa9_MA0594.1	0	1	+	9.050786138279621	8.18560062555707	GCCATAAAACA
chr15	70714224	70714225	chr15:70714225:C:T	rs137941226	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr15	70744386	70744387	chr15:70744387:A:G	rs1469162	A	G	g	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	70775818	70775819	chr15:70775819:A:G	rs4777308	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr15	71123995	71123996	chr15:71123996:C:T	rs17784142	C	T	c	Hoxa9_MA0594.1	25	0	+	0	0	.
chr15	71279327	71279328	chr15:71279328:C:A	rs116686879	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr15	71279328	71279329	chr15:71279329:G:A	rs924242475	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr15	71279363	71279364	chr15:71279364:C:T	rs12903080	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr15	71295780	71295781	chr15:71295781:G:C	rs72759680	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr15	71335565	71335566	chr15:71335566:G:T	rs66652712	G	T	T	Hoxa9_MA0594.1	2	1	-	10.652542986825011	9.53100501591131	CTCATCAATCA
chr15	71688208	71688209	chr15:71688209:C:A	chr15:71688209:C:A	C	A	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr15	71747461	71747462	chr15:71747462:T:C	rs12101956	T	C	T	Hoxa9_MA0594.1	3	1	-	9.506381912457487	6.524585485048628	CCAATAAATCT
chr15	71747725	71747726	chr15:71747726:T:G	rs114104579	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	71801426	71801427	chr15:71801427:G:C	rs765262604	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr15	71973002	71973003	chr15:71973003:A:G	rs2957736	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	72971063	72971064	chr15:72971064:A:C	rs12909626	A	C	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr15	73358860	73358861	chr15:73358861:T:C	rs11636411	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	73746128	73746129	chr15:73746129:T:G	rs74023528	T	G	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	73921530	73921531	chr15:73921531:A:G	rs7167367	A	G	g	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	73929686	73929687	chr15:73929687:G:A	rs8034403	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr15	73929701	73929702	chr15:73929702:A:G	rs8034017	A	G	A	Hoxa9_MA0594.1	7	1	+	6.766981631017401	-0.1359520426855183	GCCATGCATCA
chr15	74007528	74007529	chr15:74007529:A:G	rs10162627	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr15	74011007	74011008	chr15:74011008:C:A	rs11072463	C	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	74134976	74134977	chr15:74134977:G:A	rs116064406	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr15	74225714	74225715	chr15:74225715:T:A	rs34985083	T	A	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr15	74239913	74239914	chr15:74239914:T:C	chr15:74239914:T:C	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr15	74950715	74950716	chr15:74950716:T:C	rs111513933	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr15	75058229	75058230	chr15:75058230:G:A	rs6495145	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr15	75766502	75766503	chr15:75766503:C:T	rs2004630	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	76196998	76196999	chr15:76196999:A:T	rs74756281	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr15	76341064	76341065	chr15:76341065:C:G	rs563467475	C	G	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr15	76728160	76728161	chr15:76728161:T:C	rs67570291	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	76989112	76989113	chr15:76989113:G:A	rs59622619	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr15	77058037	77058038	chr15:77058038:C:T	rs112526267	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr15	77904312	77904313	chr15:77904313:A:G	rs150383594	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr15	77904317	77904318	chr15:77904318:T:C	rs11858386	T	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr15	78062448	78062449	chr15:78062449:A:C	rs61693026	A	C	A	Hoxa9_MA0594.1	6	1	+	7.6543638533761875	4.416943104811125	CCCATTAATCT
chr15	78211365	78211366	chr15:78211366:C:T	rs74394286	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr15	78245638	78245639	chr15:78245639:G:A	rs11633894	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr15	78245647	78245648	chr15:78245648:T:C	rs12916024	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr15	78322449	78322450	chr15:78322450:T:C	chr15:78322450:T:C	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	78614136	78614137	chr15:78614137:C:T	rs143528994	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	78728694	78728695	chr15:78728695:T:C	rs2869554	T	C	-	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	78740401	78740402	chr15:78740402:G:A	rs2017091	G	A	N	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	78798572	78798573	chr15:78798573:C:T	chr15:78798573:C:T	C	T	c	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr15	78843767	78843768	chr15:78843768:G:A	rs62011028	G	A	g	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	78871839	78871840	chr15:78871840:C:T	rs114365497	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr15	78872348	78872349	chr15:78872349:T:C	rs74024471	T	C	T	Hoxa9_MA0594.1	2	1	+	7.5836428429503755	9.503973926077597	GCTATCAATCC
chr15	79125184	79125185	chr15:79125185:T:A	rs35602654	T	A	T	Hoxa9_MA0594.1	8	1	-	7.632183602891756	11.101943655991207	ACCATCAAACA
chr15	79173962	79173963	chr15:79173963:A:G	rs28609301	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	79307574	79307575	chr15:79307575:T:A	rs12595009	T	A	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr15	79405712	79405713	chr15:79405713:C:T	rs2865696	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr15	79449923	79449924	chr15:79449924:C:T	rs12898556	C	T	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	79464385	79464386	chr15:79464386:T:C	rs1970291	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr15	79513248	79513249	chr15:79513249:C:T	rs7182374	C	T	C	Hoxa9_MA0594.1	1	1	+	7.2334010995627285	6.341851338452333	CCCATCTATCT
chr15	79562716	79562717	chr15:79562717:T:G	rs3120636	T	G	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	79562786	79562787	chr15:79562787:T:C	rs3120637	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr15	79944889	79944890	chr15:79944890:A:G	rs2006863	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr15	80017434	80017435	chr15:80017435:T:C	rs4542621	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr15	80199110	80199111	chr15:80199111:T:C	rs1865997	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr15	80215393	80215394	chr15:80215394:A:T	rs71397601	A	T	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr15	80291134	80291135	chr15:80291135:T:C	rs4468566	T	C	T	Hoxa9_MA0594.1	2	1	-	9.064232820513286	3.661870803678649	ACAATAAATCT
chr15	80473303	80473304	chr15:80473304:A:G	rs74027979	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr15	80489421	80489422	chr15:80489422:G:A	rs4778599	G	A	G	Hoxa9_MA0594.1	9	1	-	9.126027407570612	6.501314188986374	GCCATCTATCA
chr15	80579591	80579592	chr15:80579592:G:A	rs188577274	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr15	80609827	80609828	chr15:80609828:T:C	rs74027886	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr15	80718816	80718817	chr15:80718817:A:G	rs8031988	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	80834565	80834566	chr15:80834566:C:T	rs7172022	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr15	81098098	81098099	chr15:81098099:A:G	rs116705242	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	81113582	81113583	chr15:81113583:G:A	rs75964790	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	81322584	81322585	chr15:81322585:T:C	rs4635300	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	81410365	81410366	chr15:81410366:A:G	rs78916428	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	81414622	81414623	chr15:81414623:C:A	rs28522466	C	A	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr15	81631595	81631596	chr15:81631596:G:T	rs8040202	G	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr15	82160313	82160314	chr15:82160314:G:A	rs116670838	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr15	82300527	82300528	chr15:82300528:A:G	rs62010075	A	G	N	Hoxa9_MA0594.1	1	1	-	7.991314647558364	8.88286440866876	GTAATGAATCA
chr15	82300535	82300536	chr15:82300536:G:A	rs1182651805	G	A	g	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr15	82675518	82675519	chr15:82675519:A:G	rs7163990	A	G	A	Hoxa9_MA0594.1	3	1	+	9.130625221022317	6.1488287936134585	GCTATAAATCT
chr15	82730239	82730240	chr15:82730240:C:T	rs34191802	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr15	82836834	82836835	chr15:82836835:G:A	rs1313577038	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr15	83016088	83016089	chr15:83016089:C:T	rs111531829	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr15	83290489	83290490	chr15:83290490:A:G	rs7180692	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	83868246	83868247	chr15:83868247:T:C	rs4842918	T	C	C	Hoxa9_MA0594.1	2	1	+	8.08407129645524	10.004402379582464	GCTATGAATCA
chr15	83944050	83944051	chr15:83944051:T:C	rs115682838	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	84389493	84389494	chr15:84389494:C:G	rs62028145	C	G	.	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr15	84712402	84712403	chr15:84712403:T:C	rs76338965	T	C	T	Hoxa9_MA0594.1	8	1	-	8.18560062555707	6.700464748718053	ACCATAAAACA
chr15	84897769	84897770	chr15:84897770:A:G	rs73439904	A	G	a	Hoxa9_MA0594.1	14	0	+	0	0	.
chr15	84901158	84901159	chr15:84901159:C:T	rs62020869	C	T	c	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr15	84960047	84960048	chr15:84960048:A:G	rs72754976	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr15	84964924	84964925	chr15:84964925:A:G	rs12441289	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr15	84970329	84970330	chr15:84970330:T:C	rs4980352	T	C	t	Hoxa9_MA0594.1	13	0	+	0	0	.
chr15	85030575	85030576	chr15:85030576:C:G	rs143751916	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	85330404	85330405	chr15:85330405:G:A	rs74024816	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	85330436	85330437	chr15:85330437:A:C	rs7167312	A	C	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr15	85373528	85373529	chr15:85373529:A:G	rs72750800	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr15	85457271	85457272	chr15:85457272:C:T	rs4407021	C	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr15	85676362	85676363	chr15:85676363:G:C	rs80188827	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr15	85742811	85742812	chr15:85742812:G:A	rs72750182	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr15	85775421	85775422	chr15:85775422:G:A	rs11631009	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	85777412	85777413	chr15:85777413:A:G	rs2542595	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr15	85840427	85840428	chr15:85840428:A:C	rs13380162	A	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	85864069	85864070	chr15:85864070:C:A	rs73445847	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr15	86006687	86006688	chr15:86006688:G:A	rs8023930	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	86165465	86165466	chr15:86165466:A:G	rs139244829	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr15	86384387	86384388	chr15:86384388:T:G	chr15:86384388:T:G	T	G	T	Hoxa9_MA0594.1	6	1	-	10.074502860705875	6.837082112140813	CCCATCAATCT
chr15	86556138	86556139	chr15:86556139:A:G	rs73459654	A	G	A	Hoxa9_MA0594.1	10	1	+	10.53382270774282	3.897049721990051	ACAATAAATCA
chr15	86611619	86611620	chr15:86611620:C:T	rs55650546	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	86776071	86776072	chr15:86776072:G:A	rs6496362	G	A	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr15	86906115	86906116	chr15:86906116:A:T	rs112539737	A	T	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr15	87016247	87016248	chr15:87016248:T:A	rs1897654	T	A	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	87021825	87021826	chr15:87021826:G:C	rs1579553	G	C	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr15	87357944	87357945	chr15:87357945:A:T	rs1451648	A	T	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr15	87419455	87419456	chr15:87419456:T:C	rs1442295	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	87444619	87444620	chr15:87444620:G:C	rs1036810	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	87554493	87554494	chr15:87554494:A:G	rs74026808	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr15	87671479	87671480	chr15:87671480:C:T	rs6496435	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr15	88679920	88679921	chr15:88679921:T:G	rs4340308	T	G	T	Hoxa9_MA0594.1	3	1	-	9.283125442814011	5.354911018334771	GCCATACATCA
chr15	88707912	88707913	chr15:88707913:T:C	rs562917502	T	C	T	Hoxa9_MA0594.1	0	1	-	8.247667105749517	9.112852618472068	ATCATGAATCA
chr15	88878783	88878784	chr15:88878784:C:T	rs77368996	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	88913387	88913388	chr15:88913388:C:G	rs139643219	C	G	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr15	88971365	88971366	chr15:88971366:G:C	rs7163667	G	C	C	Hoxa9_MA0594.1	9	1	-	7.260118532919163	0.4617875712183161	GCCATCCATCT
chr15	89004173	89004174	chr15:89004174:C:G	rs140829618	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr15	89031142	89031143	chr15:89031143:G:A	rs74251703	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	89031157	89031158	chr15:89031158:A:G	rs2083457	A	G	G	Hoxa9_MA0594.1	1	1	-	9.037868572125442	9.929418333235837	GTAATAAATCT
chr15	89074872	89074873	chr15:89074873:C:G	rs141211652	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr15	89531254	89531255	chr15:89531255:A:C	rs8027943	A	C	A	Hoxa9_MA0594.1	4	1	-	10.317685414819367	3.408930635504147	GACATAAATCA
chr15	89890557	89890558	chr15:89890558:T:C	rs3867167	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	89938072	89938073	chr15:89938073:T:A	rs73482139	T	A	T	Hoxa9_MA0594.1	8	1	+	9.064232820513286	5.594472767413834	ACAATAAATCT
chr15	89938094	89938095	chr15:89938095:A:G	rs7403133	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	90251524	90251525	chr15:90251525:T:G	rs4357917	T	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr15	90333246	90333247	chr15:90333247:C:A	rs149151869	C	A	C	Hoxa9_MA0594.1	1	1	+	7.173729231511967	4.970868454952261	ACCCTCAATCA
chr15	90592456	90592457	chr15:90592457:C:T	rs118138191	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	90592842	90592843	chr15:90592843:A:G	rs142323735	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	91047354	91047355	chr15:91047355:A:G	rs1550639	A	G	a	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	91047356	91047357	chr15:91047357:G:T	rs12912907	G	T	g	Hoxa9_MA0594.1	21	0	-	0	0	.
chr15	91104573	91104574	chr15:91104574:G:A	rs4577064	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr15	91279682	91279683	chr15:91279683:A:C	rs7167433	A	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr15	91385215	91385216	chr15:91385216:A:G	rs7164506	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	91498633	91498634	chr15:91498634:C:T	rs8042384	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	91650948	91650949	chr15:91650949:C:T	rs4130130	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr15	91650971	91650972	chr15:91650972:C:T	rs4130129	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr15	91850232	91850233	chr15:91850233:A:G	rs12911651	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	91940982	91940983	chr15:91940983:A:C	rs1190015238	A	C	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr15	91940984	91940985	chr15:91940985:C:G	rs74028386	C	G	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr15	91940990	91940991	chr15:91940991:G:A	rs977824230	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr15	91941032	91941033	chr15:91941033:G:A	rs17643904	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr15	91983960	91983961	chr15:91983961:G:A	rs17644156	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr15	92003181	92003182	chr15:92003182:A:G	rs12593984	A	G	A	Hoxa9_MA0594.1	8	1	-	8.33117838756928	1.4578903374693901	GCAATAAATAA
chr15	92008641	92008642	chr15:92008642:C:G	rs8040010	C	G	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	92117773	92117774	chr15:92117774:C:G	rs11074041	C	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr15	92316465	92316466	chr15:92316466:A:T	rs77928289	A	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	92436815	92436816	chr15:92436816:C:A	rs11634070	C	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr15	92438865	92438866	chr15:92438866:G:T	rs12441750	G	T	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	92449773	92449774	chr15:92449774:G:A	rs12148510	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr15	92462528	92462529	chr15:92462529:A:G	rs3784723	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	92493510	92493511	chr15:92493511:G:A	rs8033301	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr15	92627573	92627574	chr15:92627574:T:C	rs28620510	T	C	t	Hoxa9_MA0594.1	6	1	-	8.510815797847973	1.6932150120923153	ACAATCAATCT
chr15	92687467	92687468	chr15:92687468:C:T	rs144893204	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	92715906	92715907	chr15:92715907:G:T	chr15:92715907:G:T	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr15	92749484	92749485	chr15:92749485:A:T	rs8038406	A	T	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	92798897	92798898	chr15:92798898:A:C	rs59586575	A	C	a	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr15	93059690	93059691	chr15:93059691:G:A	rs17526323	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr15	93073217	93073218	chr15:93073218:G:A	rs148912324	G	A	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	93187660	93187661	chr15:93187661:C:T	rs4297636	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr15	93254579	93254580	chr15:93254580:G:A	rs62043636	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	93254607	93254608	chr15:93254608:G:T	rs7164811	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr15	93284168	93284169	chr15:93284169:G:C	rs12595575	G	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr15	93289052	93289053	chr15:93289053:A:G	rs530959361	A	G	A	Hoxa9_MA0594.1	7	1	+	8.043175694344246	1.1402420206413262	AGCATCAATCA
chr15	93314806	93314807	chr15:93314807:C:T	rs117631046	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr15	93523992	93523993	chr15:93523993:G:A	rs118123660	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr15	93664822	93664823	chr15:93664823:C:T	rs56003959	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	93704589	93704590	chr15:93704590:C:T	rs34027089	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	93771523	93771524	chr15:93771524:T:A	rs12912274	T	A	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	93825929	93825930	chr15:93825930:C:A	rs7181901	C	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr15	93937646	93937647	chr15:93937647:T:A	rs7403673	T	A	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr15	94060945	94060946	chr15:94060946:C:T	rs1160143	C	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr15	94106141	94106142	chr15:94106142:G:T	rs76485258	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	94164315	94164316	chr15:94164316:G:C	rs138469879	G	C	G	Hoxa9_MA0594.1	2	1	-	8.74080400765128	2.216904019902939	ATCATCAATCT
chr15	94231194	94231195	chr15:94231195:G:A	rs147494190	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	94532335	94532336	chr15:94532336:A:G	rs11633702	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr15	94541404	94541405	chr15:94541405:T:C	rs17730572	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	94558456	94558457	chr15:94558457:A:G	rs56065022	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr15	94585158	94585159	chr15:94585159:C:T	rs7164900	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr15	94858164	94858165	chr15:94858165:C:G	rs73466808	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr15	94964741	94964742	chr15:94964742:C:G	rs77336521	C	G	C	Hoxa9_MA0594.1	0	1	-	7.929248167365919	7.506211746587568	GCAATAAAACA
chr15	95296123	95296124	chr15:95296124:A:C	chr15:95296124:A:C	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	95327020	95327021	chr15:95327021:G:C	rs1031392646	G	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr15	95464858	95464859	chr15:95464859:T:G	chr15:95464859:T:G	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr15	96011425	96011426	chr15:96011426:C:A	rs12101514	C	A	C	Hoxa9_MA0594.1	9	1	+	8.908361207066799	5.840531374170706	GGCATCAATCA
chr15	96171101	96171102	chr15:96171102:C:G	chr15:96171102:C:G	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr15	96322729	96322730	chr15:96322730:G:A	rs147461840	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr15	96324584	96324585	chr15:96324585:T:G	rs945753576	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr15	96336173	96336174	chr15:96336174:T:A	rs773700315	T	A	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr15	96474461	96474462	chr15:96474462:A:G	rs181010969	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr15	96474506	96474507	chr15:96474507:C:T	rs9673104	C	T	C	Hoxa9_MA0594.1	10	1	+	8.07066746510666	9.064232820513286	ACAATAAATCC
chr15	96720322	96720323	chr15:96720323:T:C	rs8031054	T	C	T	Hoxa9_MA0594.1	7	1	-	10.497539281484224	3.5946056077813044	GCCATCAATCT
chr15	96848633	96848634	chr15:96848634:A:G	rs56026505	A	G	A	Hoxa9_MA0594.1	3	1	+	7.929248167365919	4.94745173995706	GCAATAAAACA
chr15	97234339	97234340	chr15:97234340:G:A	rs11633774	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr15	97352794	97352795	chr15:97352795:C:T	rs34361980	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr15	98221319	98221320	chr15:98221320:T:G	rs61002347	T	G	T	Hoxa9_MA0594.1	7	1	-	9.139216866859913	4.154675313318413	ACCATGAATCA
chr15	98319607	98319608	chr15:98319608:C:T	rs12593986	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr15	98512778	98512779	chr15:98512779:C:T	rs933809	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr15	98513683	98513684	chr15:98513684:T:A	rs1863275	T	A	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr15	98586279	98586280	chr15:98586280:G:C	rs1370853568	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr15	98921753	98921754	chr15:98921754:C:G	rs34222688	C	G	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	99113594	99113595	chr15:99113595:T:C	rs2305445	T	C	C	Hoxa9_MA0594.1	10	1	-	7.8637947703911975	1.2270217846384286	GCAGTCAATCA
chr15	99253884	99253885	chr15:99253885:G:T	chr15:99253885:G:T	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr15	99386360	99386361	chr15:99386361:G:A	rs371134191	G	A	G	Hoxa9_MA0594.1	5	1	-	10.074502860705875	7.6543638533761875	CCCATCAATCT
chr15	99386361	99386362	chr15:99386362:A:T	rs62025384	A	T	A	Hoxa9_MA0594.1	4	1	-	10.074502860705875	3.1657480813906536	CCCATCAATCT
chr15	99917512	99917513	chr15:99917513:G:T	rs75717794	G	T	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr15	99955621	99955622	chr15:99955622:A:C	rs2581347	A	C	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr15	100043065	100043066	chr15:100043066:A:G	rs73472476	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr15	100253966	100253967	chr15:100253967:T:A	rs7172834	T	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	100330780	100330781	chr15:100330781:T:C	rs117279171	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr15	100591335	100591336	chr15:100591336:C:T	rs11247227	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr15	100591360	100591361	chr15:100591361:C:G	rs57403659	C	G	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr15	100726339	100726340	chr15:100726340:C:T	rs74609871	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	100726346	100726347	chr15:100726347:G:A	rs79217209	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	100766553	100766554	chr15:100766554:C:T	rs75463155	C	T	c	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr15	100771230	100771231	chr15:100771231:C:T	rs12593329	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr15	100809762	100809763	chr15:100809763:T:C	rs35206288	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr15	100948099	100948100	chr15:100948100:T:C	rs72765027	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr15	101017166	101017167	chr15:101017167:C:T	rs11638367	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr15	101017167	101017168	chr15:101017168:A:G	rs8037401	A	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr15	101080296	101080297	chr15:101080297:T:G	rs73490964	T	G	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr15	101107162	101107163	chr15:101107163:C:T	rs56257608	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr15	101170780	101170781	chr15:101170781:A:G	rs2168188	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr15	101301626	101301627	chr15:101301627:T:C	rs4965374	T	C	t	Hoxa9_MA0594.1	3	1	-	7.877589431813438	4.895793004404579	TCAATCAATCA
chr15	101301648	101301649	chr15:101301649:C:A	rs4965824	C	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr15	101323262	101323263	chr15:101323263:T:C	rs79999475	T	C	T	Hoxa9_MA0594.1	4	1	+	7.565650261440604	0.6568954821253845	GCCATAAAGCA
chr15	101347588	101347589	chr15:101347589:T:C	rs1030	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr15	101537864	101537865	chr15:101537865:T:G	rs992422093	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr15	101561032	101561033	chr15:101561033:G:C	rs966260	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr15	101568488	101568489	chr15:101568489:G:T	rs34551410	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	65073	65074	chr16:65074:A:C	rs6600227	A	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr16	814022	814023	chr16:814023:C:T	rs115091481	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	907884	907885	chr16:907885:A:G	rs4984969	A	G	A	Hoxa9_MA0594.1	3	1	+	10.845591197800056	7.8637947703911975	GCAATCAATCA
chr16	1109816	1109817	chr16:1109817:C:T	rs60522273	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr16	2194657	2194658	chr16:2194658:T:C	rs116033919	T	C	T	Hoxa9_MA0594.1	10	1	-	10.507458459354975	3.8706854736022063	GTAATAAATCA
chr16	2962184	2962185	chr16:2962185:C:G	rs113672985	C	G	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	3191255	3191256	chr16:3191256:G:C	rs74003328	G	C	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr16	3191295	3191296	chr16:3191296:G:T	rs185151945	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	3456371	3456372	chr16:3456372:T:C	rs150218386	T	C	T	Hoxa9_MA0594.1	3	1	-	10.422554777021706	7.440758349612847	CCAATCAATCA
chr16	3459348	3459349	chr16:3459349:A:G	chr16:3459349:A:G	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	3481934	3481935	chr16:3481935:C:T	rs17136441	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	3690570	3690571	chr16:3690571:T:C	rs139644916	T	C	T	Hoxa9_MA0594.1	4	1	+	10.004402379582464	3.0956476002672426	GCCATGAATCA
chr16	4515380	4515381	chr16:4515381:T:C	rs72768340	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr16	4653176	4653177	chr16:4653177:T:C	rs28592187	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr16	5221441	5221442	chr16:5221442:T:C	rs9930986	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	5373309	5373310	chr16:5373310:C:T	rs7203815	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	5558057	5558058	chr16:5558058:G:A	rs35346850	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr16	5558080	5558081	chr16:5558081:T:G	rs35133407	T	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr16	5558082	5558083	chr16:5558083:T:A	rs35255225	T	A	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr16	5558108	5558109	chr16:5558109:T:C	rs35785829	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	5571537	5571538	chr16:5571538:C:A	rs7187170	C	A	G	Hoxa9_MA0594.1	2	1	+	7.632183602891756	6.510645631978054	ACCATCAAACA
chr16	5678483	5678484	chr16:5678484:G:A	rs78171809	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr16	6023122	6023123	chr16:6023123:G:C	rs1165501115	G	C	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	6067498	6067499	chr16:6067499:C:T	rs4146811	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	6080285	6080286	chr16:6080286:A:G	rs976200	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr16	6205571	6205572	chr16:6205572:T:G	rs17139545	T	G	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	6547283	6547284	chr16:6547284:G:C	rs8059978	G	C	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	6573567	6573568	chr16:6573568:T:G	rs189878918	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	6678744	6678745	chr16:6678745:A:G	rs4786907	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	6732734	6732735	chr16:6732735:G:C	rs17141167	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	6753733	6753734	chr16:6753734:C:G	rs8044206	C	G	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	6772165	6772166	chr16:6772166:C:G	rs62016077	C	G	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	6772207	6772208	chr16:6772208:A:G	rs62016078	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	6804599	6804600	chr16:6804600:T:C	rs117540590	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	6928193	6928194	chr16:6928194:A:T	rs7185488	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	6946416	6946417	chr16:6946417:G:A	rs56271348	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	6993749	6993750	chr16:6993750:C:A	rs74010434	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr16	7083246	7083247	chr16:7083247:G:A	rs1478713	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	7083284	7083285	chr16:7083285:C:G	rs7194969	C	G	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	7219415	7219416	chr16:7219416:A:G	rs12050973	A	G	a	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr16	7334225	7334226	chr16:7334226:C:T	rs12448770	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	7443022	7443023	chr16:7443023:C:T	rs2109437	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	7547220	7547221	chr16:7547221:C:T	rs3785253	C	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	7571804	7571805	chr16:7571805:G:A	rs3826221	G	A	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr16	7577991	7577992	chr16:7577992:G:A	rs11077199	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	7703967	7703968	chr16:7703968:A:C	rs1860321	A	C	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr16	7747188	7747189	chr16:7747189:A:C	rs74827341	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	7748492	7748493	chr16:7748493:T:C	rs75556508	T	C	C	Hoxa9_MA0594.1	8	1	+	8.33117838756928	1.4578903374693901	GCAATAAATAA
chr16	8033249	8033250	chr16:8033250:A:G	rs58368518	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr16	8188985	8188986	chr16:8188986:G:A	rs17145380	G	A	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr16	8232986	8232987	chr16:8232987:A:T	rs74005971	A	T	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr16	8249209	8249210	chr16:8249210:C:T	rs9302865	C	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr16	8361597	8361598	chr16:8361598:C:T	rs58366723	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr16	8512758	8512759	chr16:8512759:T:C	rs75063836	T	C	C	Hoxa9_MA0594.1	10	1	+	7.581196251050087	6.58763089564346	GCCATAAAACT
chr16	8565206	8565207	chr16:8565207:A:G	rs4580141	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	8600776	8600777	chr16:8600777:T:C	rs10400954	T	C	C	Hoxa9_MA0594.1	4	1	+	7.147364983124122	0.2386102038089022	GTCCTCAATCA
chr16	8655181	8655182	chr16:8655182:T:C	rs117491449	T	C	T	Hoxa9_MA0594.1	4	1	+	10.159406543039145	3.250651763723923	GTCATAAATCT
chr16	8682486	8682487	chr16:8682487:G:C	rs12447028	G	C	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	8687652	8687653	chr16:8687653:C:T	rs11646372	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	8730802	8730803	chr16:8730803:G:A	rs111861231	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	9054509	9054510	chr16:9054510:T:A	rs12598573	T	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	9072688	9072689	chr16:9072689:T:C	rs78463824	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr16	9073205	9073206	chr16:9073206:G:A	rs138284578	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	9174953	9174954	chr16:9174954:C:G	rs117764705	C	G	C	Hoxa9_MA0594.1	0	1	+	6.837082112140813	7.260118532919163	CCCATCCATCT
chr16	9413205	9413206	chr16:9413206:A:G	rs139459190	A	G	a	Hoxa9_MA0594.1	23	0	-	0	0	.
chr16	9455101	9455102	chr16:9455102:C:T	rs1428801	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	9661623	9661624	chr16:9661624:G:C	rs17568440	G	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	9773111	9773112	chr16:9773112:T:C	rs113253890	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	9773139	9773140	chr16:9773140:T:A	rs1261938133	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	10197222	10197223	chr16:10197223:C:G	rs11648582	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	10371214	10371215	chr16:10371215:C:G	rs6497945	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	10513976	10513977	chr16:10513977:G:A	rs4780929	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	10521814	10521815	chr16:10521815:G:A	rs77236618	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	10584980	10584981	chr16:10584981:A:G	rs2068355	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	10722811	10722812	chr16:10722812:T:G	rs1729056	T	G	T	Hoxa9_MA0594.1	3	1	-	8.45982798789041	4.531613563411169	CCAATGAATCA
chr16	10777155	10777156	chr16:10777156:C:T	rs62026502	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	10835500	10835501	chr16:10835501:A:G	rs10048098	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr16	10964184	10964185	chr16:10964185:C:G	rs567627809	C	G	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	10964186	10964187	chr16:10964187:C:T	rs529101772	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr16	10983197	10983198	chr16:10983198:T:C	rs77330898	T	C	T	Hoxa9_MA0594.1	2	1	-	9.980405685077507	4.578043668242868	ACAATCAATCA
chr16	10991968	10991969	chr16:10991969:T:G	rs142614144	T	G	t	Hoxa9_MA0594.1	7	1	-	8.232403979495325	3.2478624259538256	CTCATTAATCA
chr16	11047463	11047464	chr16:11047464:T:C	rs16957976	T	C	T	Hoxa9_MA0594.1	3	1	-	10.074502860705875	7.092706433297016	CCCATCAATCT
chr16	11158971	11158972	chr16:11158972:C:T	rs28087	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr16	11276740	11276741	chr16:11276741:C:G	rs8060767	C	G	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	11316460	11316461	chr16:11316461:T:A	rs144467266	T	A	T	Hoxa9_MA0594.1	8	1	+	8.729708420148697	5.259948367049245	GCCATCCATCA
chr16	11339403	11339404	chr16:11339404:T:C	rs756322942	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr16	11371769	11371770	chr16:11371770:C:T	rs72773885	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr16	11371786	11371787	chr16:11371787:G:C	rs76826809	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	11372653	11372654	chr16:11372654:T:C	rs6498187	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr16	11391038	11391039	chr16:11391039:T:C	rs9928918	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	11523801	11523802	chr16:11523802:A:G	rs12930396	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	11584098	11584099	chr16:11584099:A:C	rs12444653	A	C	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr16	11618539	11618540	chr16:11618540:A:G	rs182831857	A	G	A	Hoxa9_MA0594.1	4	1	-	6.589196817996939	-0.3195579613182802	CCCATCAAGCA
chr16	11689466	11689467	chr16:11689467:A:G	rs2287201	A	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	12064042	12064043	chr16:12064043:T:C	rs10500381	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr16	12113633	12113634	chr16:12113634:G:A	rs350256	G	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	12205376	12205377	chr16:12205377:C:T	rs1472979	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	12280141	12280142	chr16:12280142:A:G	rs12919169	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	12412460	12412461	chr16:12412461:C:T	rs57640286	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	12445552	12445553	chr16:12445553:C:G	rs11075078	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	12612636	12612637	chr16:12612637:C:G	rs12934268	C	G	C	Hoxa9_MA0594.1	0	1	+	7.58145301587856	8.004489436656911	CCAATCTATCA
chr16	12707174	12707175	chr16:12707175:T:C	rs13337740	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	12758492	12758493	chr16:12758493:C:T	rs186714451	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr16	12900239	12900240	chr16:12900240:T:C	rs11644362	T	C	T	Hoxa9_MA0594.1	4	1	+	8.51281655705086	1.604061777735639	CCAATAAATCC
chr16	12976951	12976952	chr16:12976952:C:G	rs34460306	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr16	13029815	13029816	chr16:13029816:G:A	rs8047829	G	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	13036707	13036708	chr16:13036708:A:G	rs6498377	A	G	G	Hoxa9_MA0594.1	6	1	-	9.256408009457576	8.86008902203566	CCCATATATCA
chr16	14019943	14019944	chr16:14019944:A:G	rs1651186	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	14300986	14300987	chr16:14300987:C:T	rs193536	C	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	14569477	14569478	chr16:14569478:G:A	rs142678740	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	14628309	14628310	chr16:14628310:A:G	chr16:14628310:A:G	A	G	A	Hoxa9_MA0594.1	2	1	+	7.440758349612847	2.038396332778209	CCAGTCAATCA
chr16	14957101	14957102	chr16:14957102:G:A	rs552526455	G	A	.	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	14980921	14980922	chr16:14980922:C:T	rs5029183	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	15055148	15055149	chr16:15055149:T:C	rs1008429903	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr16	15518442	15518443	chr16:15518443:A:C	chr16:15518443:A:C	A	C	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr16	15519015	15519016	chr16:15519016:T:G	rs529281264	T	G	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr16	15651034	15651035	chr16:15651035:C:T	rs148025986	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	15672968	15672969	chr16:15672969:G:A	rs16967584	G	A	G	Hoxa9_MA0594.1	0	1	+	7.618418680842992	6.753233168120441	GCTGTAAATCA
chr16	15728217	15728218	chr16:15728218:G:C	rs2018109	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	15803781	15803782	chr16:15803782:T:A	rs74449435	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	15915884	15915885	chr16:15915885:A:G	rs56043345	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	16171703	16171704	chr16:16171704:C:A	rs8045279	C	A	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	16638488	16638489	chr16:16638489:C:T	rs2606527	C	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	16812704	16812705	chr16:16812705:T:G	rs80087794	T	G	.	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	16983708	16983709	chr16:16983709:G:A	rs576882660	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	17138950	17138951	chr16:17138951:C:T	chr16:17138951:C:T	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	17159782	17159783	chr16:17159783:G:T	rs72775997	G	T	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr16	17227549	17227550	chr16:17227550:A:G	rs77383255	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr16	17335578	17335579	chr16:17335579:A:G	rs117226146	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr16	17579439	17579440	chr16:17579440:C:G	chr16:17579440:C:G	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	17619545	17619546	chr16:17619546:G:A	rs7201964	G	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	17823027	17823028	chr16:17823028:C:T	rs6498744	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr16	17830956	17830957	chr16:17830957:A:G	rs4781921	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	18720620	18720621	chr16:18720621:T:C	rs187749760	T	C	T	Hoxa9_MA0594.1	1	1	+	8.561166597372587	9.45271635848298	GTCATAAATAA
chr16	18866476	18866477	chr16:18866477:G:A	rs184273704	G	A	-	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	19192922	19192923	chr16:19192923:T:G	rs71382602	T	G	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr16	19308519	19308520	chr16:19308520:G:C	rs179229	G	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	19708188	19708189	chr16:19708189:C:T	rs768757015	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr16	19833467	19833468	chr16:19833468:C:G	rs1542919	C	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	19854480	19854481	chr16:19854481:G:A	rs77641495	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	20192754	20192755	chr16:20192755:G:A	rs58444485	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr16	21514390	21514391	chr16:21514391:T:C	chr16:21514391:T:C	T	C	.	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr16	22318436	22318437	chr16:22318437:C:T	rs77051195	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr16	22869020	22869021	chr16:22869021:T:C	rs2283531	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	23058724	23058725	chr16:23058725:C:T	rs113752683	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	23400484	23400485	chr16:23400485:G:A	rs140913850	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	23400515	23400516	chr16:23400516:G:A	rs250581	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	23404394	23404395	chr16:23404395:A:T	rs118164971	A	T	A	Hoxa9_MA0594.1	3	1	+	10.317685414819367	3.474948772211679	GACATAAATCA
chr16	23537479	23537480	chr16:23537480:G:A	rs7199108	G	A	g	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr16	23786491	23786492	chr16:23786492:A:G	rs2575385	A	G	A	Hoxa9_MA0594.1	7	1	+	7.2202263104641835	0.31729263676126335	CTCATGAATCT
chr16	24056992	24056993	chr16:24056993:G:A	rs10852259	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	24057742	24057743	chr16:24057743:T:C	rs12448514	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	24069898	24069899	chr16:24069899:C:T	rs16973189	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr16	24072236	24072237	chr16:24072237:T:C	rs7192503	T	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr16	24122401	24122402	chr16:24122402:A:G	rs78467605	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	24610825	24610826	chr16:24610826:T:C	rs72785738	T	C	T	Hoxa9_MA0594.1	7	1	-	8.561166597372587	1.658232923669666	GTCATAAATAA
chr16	24802168	24802169	chr16:24802169:C:T	rs113098948	C	T	c	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	25192138	25192139	chr16:25192139:C:T	rs79692743	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr16	25258857	25258858	chr16:25258858:G:A	rs544636888	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	25778015	25778016	chr16:25778016:G:C	rs72778967	G	C	G	Hoxa9_MA0594.1	1	1	-	7.375831144700604	4.317063183053643	GCAATCAAACA
chr16	25888029	25888030	chr16:25888030:C:T	rs111988583	C	T	T	Hoxa9_MA0594.1	0	1	+	11.544092747935409	8.99912740272714	CCCATCAATCA
chr16	25889019	25889020	chr16:25889020:A:G	rs114449651	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr16	25895586	25895587	chr16:25895587:C:T	rs115740105	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	25895588	25895589	chr16:25895589:C:G	rs113046072	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr16	25966735	25966736	chr16:25966736:C:T	rs7184092	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr16	25966743	25966744	chr16:25966744:A:G	rs11074736	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr16	26063178	26063179	chr16:26063179:C:T	rs3803712	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr16	26374397	26374398	chr16:26374398:T:G	rs11643614	T	G	-	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	26374403	26374404	chr16:26374404:A:G	rs11648411	A	G	-	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	26374523	26374524	chr16:26374524:G:A	rs201899989	G	A	-	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	26374540	26374541	chr16:26374541:T:C	rs181684870	T	C	-	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	26445767	26445768	chr16:26445768:A:T	rs2017588	A	T	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr16	26714395	26714396	chr16:26714396:C:T	rs4787385	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	26727944	26727945	chr16:26727945:G:T	rs75345066	G	T	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	26728034	26728035	chr16:26728035:G:T	rs61102343	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	26930993	26930994	chr16:26930994:C:G	rs187773473	C	G	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	27424615	27424616	chr16:27424616:G:A	rs9921638	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	27428930	27428931	chr16:27428931:A:G	rs3093392	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr16	27428931	27428932	chr16:27428932:A:G	rs3093295	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	27639340	27639341	chr16:27639341:C:T	rs184150482	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr16	27828162	27828163	chr16:27828163:G:A	rs34036297	G	A	-	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	27951781	27951782	chr16:27951782:A:T	rs1077719	A	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr16	27998483	27998484	chr16:27998484:C:T	rs117932830	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr16	28092157	28092158	chr16:28092158:C:T	rs176108	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	28136903	28136904	chr16:28136904:A:G	rs1026352650	A	G	a	Hoxa9_MA0594.1	24	0	+	0	0	.
chr16	28555611	28555612	chr16:28555612:A:G	rs12934920	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr16	28571893	28571894	chr16:28571894:G:A	rs151230	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	28636783	28636784	chr16:28636784:G:T	rs926542177	G	T	.	Hoxa9_MA0594.1	17	0	+	0	0	.
chr16	28846558	28846559	chr16:28846559:A:G	rs140115255	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr16	28846581	28846582	chr16:28846582:C:T	rs1157939786	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	29109864	29109865	chr16:29109865:C:T	rs77551377	C	T	.	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr16	29128317	29128318	chr16:29128318:C:T	rs566400097	C	T	.	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	29128333	29128334	chr16:29128334:A:G	rs1646086	A	G	.	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	29196617	29196618	chr16:29196618:G:T	rs55710189	G	T	.	Hoxa9_MA0594.1	0	1	+	8.391575681703616	5.423573915716997	GTCATACATCA
chr16	29270174	29270175	chr16:29270175:A:G	rs62037276	A	G	.	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	29271043	29271044	chr16:29271044:T:C	rs28681294	T	C	.	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	29288852	29288853	chr16:29288853:A:G	rs796670392	A	G	.	Hoxa9_MA0594.1	7	1	+	7.929248167365919	1.026314493662999	GCAATAAAACA
chr16	30922389	30922390	chr16:30922390:G:A	rs569089776	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	30922389	30922390	chr16:30922390:G:T	chr16:30922390:G:T	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	30922430	30922431	chr16:30922431:C:A	rs147834303	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr16	31046603	31046604	chr16:31046604:C:T	rs115981697	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr16	31065310	31065311	chr16:31065311:A:G	rs1352967489	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	31065337	31065338	chr16:31065338:C:T	rs184812728	C	T	C	Hoxa9_MA0594.1	0	1	-	7.083834918747911	6.218649406025359	GCCATTAATCC
chr16	31065340	31065341	chr16:31065341:T:G	chr16:31065341:T:G	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr16	31065342	31065343	chr16:31065343:T:C	rs368713779	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	31269339	31269340	chr16:31269340:T:C	rs6565225	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	31701152	31701153	chr16:31701153:A:G	rs116742914	A	G	a	Hoxa9_MA0594.1	24	0	+	0	0	.
chr16	31874723	31874724	chr16:31874724:C:T	rs149171446	C	T	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr16	33741716	33741717	chr16:33741717:T:A	chr16:33741717:T:A	T	A	.	Hoxa9_MA0594.1	1	1	-	8.773111023127315	10.084422038576625	CAAATAAATCA
chr16	33741716	33741717	chr16:33741717:T:C	rs2698636	T	C	.	Hoxa9_MA0594.1	1	1	-	8.773111023127315	7.9172038380400585	CAAATAAATCA
chr16	46690256	46690257	chr16:46690257:C:A	rs556641705	C	A	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	47203697	47203698	chr16:47203698:G:A	rs118038478	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr16	47985228	47985229	chr16:47985229:G:A	rs117434927	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	48574054	48574055	chr16:48574055:T:C	rs7188741	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	48610401	48610402	chr16:48610402:A:C	rs76489411	A	C	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	48895154	48895155	chr16:48895155:G:C	rs77903137	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	48941132	48941133	chr16:48941133:T:G	rs1990687	T	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	48947435	48947436	chr16:48947436:G:A	rs9937037	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	48947442	48947443	chr16:48947443:A:C	rs140710086	A	C	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	49026947	49026948	chr16:49026948:T:G	rs147846679	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr16	49055510	49055511	chr16:49055511:A:G	rs2908875	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	49081724	49081725	chr16:49081725:T:C	rs2967249	T	C	C	Hoxa9_MA0594.1	2	1	+	7.66103487567689	9.581365958804113	CCTATGAATCA
chr16	49333715	49333716	chr16:49333716:T:C	rs11860124	T	C	C	Hoxa9_MA0594.1	10	1	-	9.126027407570612	2.4892544218178436	GCCATCTATCA
chr16	49570839	49570840	chr16:49570840:A:T	rs12446347	A	T	A	Hoxa9_MA0594.1	6	1	+	6.559551194393908	3.718449433250763	CCCATCACTCA
chr16	49600849	49600850	chr16:49600850:G:A	rs528254355	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr16	49651889	49651890	chr16:49651890:G:A	rs12932545	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	49856515	49856516	chr16:49856516:G:A	rs189365662	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr16	49858089	49858090	chr16:49858090:C:A	rs1015856410	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	49980055	49980056	chr16:49980056:G:A	rs12597023	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr16	50227169	50227170	chr16:50227170:G:A	rs9937905	G	A	g	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	50397623	50397624	chr16:50397624:G:A	rs11640673	G	A	a	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr16	50702029	50702030	chr16:50702030:C:T	rs8045009	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	50734310	50734311	chr16:50734311:A:G	rs2357792	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	50839053	50839054	chr16:50839054:T:C	rs16948913	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	50841468	50841469	chr16:50841469:G:T	rs4785461	G	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	50939166	50939167	chr16:50939167:C:T	rs9935378	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr16	51218240	51218241	chr16:51218241:G:C	rs8044297	G	C	C	Hoxa9_MA0594.1	0	1	+	11.628996430268678	11.205960009490326	GTCATAAATCA
chr16	51255681	51255682	chr16:51255682:T:G	rs7185437	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	51255775	51255776	chr16:51255776:A:G	rs4416010	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	51305542	51305543	chr16:51305543:G:T	rs62039722	G	T	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr16	51327200	51327201	chr16:51327201:G:C	rs1827982	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr16	51341579	51341580	chr16:51341580:C:A	rs28706155	C	A	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr16	51609724	51609725	chr16:51609725:T:C	rs2648004	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr16	51723330	51723331	chr16:51723331:A:G	rs34869093	A	G	A	Hoxa9_MA0594.1	3	1	+	9.472796552016483	6.491000124607625	CCCATAAATTA
chr16	51734382	51734383	chr16:51734383:G:A	rs113732894	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr16	51818371	51818372	chr16:51818372:G:A	rs140258373	G	A	g	Hoxa9_MA0594.1	1	1	-	7.813535555584478	6.921985794474082	GCCATACATCT
chr16	51880661	51880662	chr16:51880662:G:A	rs114382053	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr16	52114880	52114881	chr16:52114881:A:G	rs748526499	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr16	52751778	52751779	chr16:52751779:G:C	rs4784252	G	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	53010794	53010795	chr16:53010795:T:C	rs56085964	T	C	T	Hoxa9_MA0594.1	3	1	-	8.260841894848062	5.279045467439203	ACCATCTATCA
chr16	53053660	53053661	chr16:53053661:G:T	rs35497000	G	T	g	Hoxa9_MA0594.1	1	1	-	7.877589431813438	5.674728655253732	TCAATCAATCA
chr16	53092200	53092201	chr16:53092201:C:G	rs4784292	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr16	53160235	53160236	chr16:53160236:C:T	rs7188313	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr16	53266101	53266102	chr16:53266102:C:T	rs8043931	C	T	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	53433809	53433810	chr16:53433810:A:G	rs6499617	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	53764233	53764234	chr16:53764234:G:A	rs115290133	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr16	53784921	53784922	chr16:53784922:A:G	rs56313538	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr16	53999162	53999163	chr16:53999163:A:G	rs11646488	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr16	54072058	54072059	chr16:54072059:G:A	rs2540766	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr16	54178359	54178360	chr16:54178360:A:G	rs836995	A	G	A	Hoxa9_MA0594.1	3	1	+	11.655360678656521	8.673564251247663	ACCATAAATCA
chr16	54328693	54328694	chr16:54328694:T:A	rs4784362	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	54334761	54334762	chr16:54334762:G:T	rs11859377	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr16	54375355	54375356	chr16:54375356:G:C	rs12596433	G	C	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	54448320	54448321	chr16:54448321:C:T	rs9932177	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr16	54468035	54468036	chr16:54468036:A:C	rs10521311	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr16	54499537	54499538	chr16:54499538:G:T	rs74020677	G	T	G	Hoxa9_MA0594.1	5	1	-	9.632353768761673	10.185770791426988	ACCATCAATCT
chr16	54927317	54927318	chr16:54927318:T:C	rs190213143	T	C	T	Hoxa9_MA0594.1	4	1	+	8.73221190369779	1.8234571243825688	CTTATCAATCA
chr16	54940028	54940029	chr16:54940029:A:G	rs60260840	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr16	55002134	55002135	chr16:55002135:T:C	rs4421976	T	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	55056904	55056905	chr16:55056905:C:T	rs557200544	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	55056932	55056933	chr16:55056933:C:T	rs566018539	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	55056998	55056999	chr16:55056999:G:T	rs11646232	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	55281049	55281050	chr16:55281050:T:C	rs1559460	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr16	55507060	55507061	chr16:55507061:C:T	rs1861319	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr16	55586895	55586896	chr16:55586896:A:G	rs9944381	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	55783618	55783619	chr16:55783619:C:T	rs74019262	C	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	56075605	56075606	chr16:56075606:G:C	rs77578007	G	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	56103109	56103110	chr16:56103110:C:G	rs747471	C	G	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr16	56269480	56269481	chr16:56269481:G:A	rs111674379	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr16	56289319	56289320	chr16:56289320:A:G	rs8043572	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	56384423	56384424	chr16:56384424:C:G	rs9921942	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	56420198	56420199	chr16:56420199:T:G	rs12325384	T	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr16	56708447	56708448	chr16:56708448:A:C	rs4783954	A	C	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr16	56833891	56833892	chr16:56833892:C:T	rs7184439	C	T	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr16	56912734	56912735	chr16:56912735:C:G	rs711747	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	56963320	56963321	chr16:56963321:G:A	rs1864163	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	57091483	57091484	chr16:57091484:G:A	rs289722	G	A	G	Hoxa9_MA0594.1	0	1	-	6.837082112140813	4.292116766932545	CCCATCCATCT
chr16	57356305	57356306	chr16:57356306:G:T	rs4784799	G	T	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	57356555	57356556	chr16:57356556:C:T	rs79775828	C	T	C	Hoxa9_MA0594.1	1	1	+	9.506381912457487	8.614832151347091	CCAATAAATCT
chr16	57356565	57356566	chr16:57356566:C:G	rs669763	C	G	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	57357478	57357479	chr16:57357479:G:A	rs182668	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	57404259	57404260	chr16:57404260:C:T	rs72792971	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr16	57465989	57465990	chr16:57465990:T:C	rs4937	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	57564660	57564661	chr16:57564661:T:C	chr16:57564661:T:C	T	C	T	Hoxa9_MA0594.1	7	1	-	7.415122238259951	0.512188564557031	CTCATCCATCA
chr16	57606639	57606640	chr16:57606640:A:G	rs12708990	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr16	57618982	57618983	chr16:57618983:G:A	rs74882768	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr16	57702318	57702319	chr16:57702319:C:T	rs77544473	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr16	57715867	57715868	chr16:57715868:C:T	rs1463236	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr16	57812565	57812566	chr16:57812566:C:T	rs4784014	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr16	57812573	57812574	chr16:57812574:G:A	rs78381060	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr16	57863238	57863239	chr16:57863239:G:T	rs4784016	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr16	57953032	57953033	chr16:57953033:G:T	rs11858999	G	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	58168179	58168180	chr16:58168180:A:T	rs1875523	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	58444426	58444427	chr16:58444427:C:T	rs7184189	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr16	58608733	58608734	chr16:58608734:T:A	rs12447860	T	A	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr16	59058548	59058549	chr16:59058549:A:G	rs1437185	A	G	A	Hoxa9_MA0594.1	4	1	-	9.581365958804113	2.672611179488892	CCCATGAATCA
chr16	59168530	59168531	chr16:59168531:G:A	rs12444458	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr16	59192945	59192946	chr16:59192946:A:G	rs13335924	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	59702110	59702111	chr16:59702111:T:C	rs191794154	T	C	T	Hoxa9_MA0594.1	7	1	-	10.046798085586536	3.143864411883616	GCTATCAATCA
chr16	59749998	59749999	chr16:59749999:G:T	rs13336580	G	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr16	59840316	59840317	chr16:59840317:A:G	chr16:59840317:A:G	A	G	a	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	60061474	60061475	chr16:60061475:T:C	rs36553	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	60143103	60143104	chr16:60143104:A:G	rs2897578	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	60182149	60182150	chr16:60182150:C:T	rs7195993	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr16	60727926	60727927	chr16:60727927:A:G	rs139208241	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr16	62096384	62096385	chr16:62096385:G:A	rs78775881	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr16	62465723	62465724	chr16:62465724:C:T	rs13337867	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	62545689	62545690	chr16:62545690:T:C	rs3011236	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	62577014	62577015	chr16:62577015:G:A	rs79921280	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr16	62604863	62604864	chr16:62604864:G:A	rs73556670	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr16	63060372	63060373	chr16:63060373:G:C	rs2055848	G	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr16	63175003	63175004	chr16:63175004:C:T	rs532042078	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	63539471	63539472	chr16:63539472:G:A	rs8045334	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	63807292	63807293	chr16:63807293:T:C	rs322570	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	64250605	64250606	chr16:64250606:C:A	rs59753296	C	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	64305189	64305190	chr16:64305190:G:A	rs2917705	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	64399091	64399092	chr16:64399092:G:C	rs1012446	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	64820277	64820278	chr16:64820278:A:G	rs62044495	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr16	64907876	64907877	chr16:64907877:T:C	rs78911631	T	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	64907983	64907984	chr16:64907984:G:A	rs17498325	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	65090476	65090477	chr16:65090477:G:T	rs6416689	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	65309651	65309652	chr16:65309652:C:T	rs77767054	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	65622518	65622519	chr16:65622519:G:A	rs140662626	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr16	65761214	65761215	chr16:65761215:C:T	rs74781123	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	65787457	65787458	chr16:65787458:A:G	rs1077337	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	65998575	65998576	chr16:65998576:G:A	rs55811917	G	A	g	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	66007897	66007898	chr16:66007898:G:A	rs1108481	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	66017014	66017015	chr16:66017015:G:A	rs17765854	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	66154679	66154680	chr16:66154680:A:T	rs1039135766	A	T	A	Hoxa9_MA0594.1	8	1	-	6.819970200177851	3.350210147078399	GCCATACATCC
chr16	66205649	66205650	chr16:66205650:A:C	rs188360932	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr16	66212784	66212785	chr16:66212785:G:C	rs235088	G	C	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	66266643	66266644	chr16:66266644:C:T	rs143884328	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr16	66266647	66266648	chr16:66266648:G:A	rs7199702	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr16	66822993	66822994	chr16:66822994:C:T	rs409033	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr16	67018282	67018283	chr16:67018283:G:C	rs75318969	G	C	C	Hoxa9_MA0594.1	9	1	-	7.47079379598613	0.6724628342852832	GCACTAAATCA
chr16	67269454	67269455	chr16:67269455:C:T	rs8050508	C	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr16	67356638	67356639	chr16:67356639:T:A	rs78540639	T	A	T	Hoxa9_MA0594.1	5	1	-	9.929418333235837	6.955862303240835	GCAATAAATCT
chr16	67564529	67564530	chr16:67564530:G:C	rs35482869	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr16	67886501	67886502	chr16:67886502:C:G	rs75399276	C	G	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	67942416	67942417	chr16:67942417:A:T	rs4986970	A	T	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr16	68186065	68186066	chr16:68186066:A:G	rs9932414	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	68342666	68342667	chr16:68342667:A:G	rs6499172	A	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr16	68373550	68373551	chr16:68373551:G:A	rs3760001	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr16	68399568	68399569	chr16:68399569:T:C	rs766188272	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	68524144	68524145	chr16:68524145:G:A	rs4783647	G	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr16	68539858	68539859	chr16:68539859:C:T	rs201210860	C	T	C	Hoxa9_MA0594.1	2	1	+	6.837082112140813	4.91675102901359	CCCATCCATCT
chr16	68687566	68687567	chr16:68687567:T:C	rs2296405	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr16	68948541	68948542	chr16:68948542:C:G	rs79871631	C	G	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	68993585	68993586	chr16:68993586:T:C	rs76505021	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	69189073	69189074	chr16:69189074:G:A	rs111841318	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr16	69224600	69224601	chr16:69224601:T:G	rs7192863	T	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	69315875	69315876	chr16:69315876:A:T	rs35815622	A	T	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	69315881	69315882	chr16:69315882:T:C	rs11644691	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr16	69325012	69325013	chr16:69325013:G:A	rs12258	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr16	69410496	69410497	chr16:69410497:T:C	rs149518849	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	69451209	69451210	chr16:69451210:G:A	rs76196490	G	A	g	Hoxa9_MA0594.1	3	1	+	7.515742854075367	10.497539281484224	GCCGTCAATCT
chr16	69564520	69564521	chr16:69564521:A:C	rs968753302	A	C	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	69564528	69564529	chr16:69564529:G:C	rs116358496	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	69916626	69916627	chr16:69916627:T:C	rs117016888	T	C	T	Hoxa9_MA0594.1	7	1	-	10.046798085586536	3.143864411883616	GCTATCAATCA
chr16	69916637	69916638	chr16:69916638:G:A	rs115291707	G	A	g	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	70103318	70103319	chr16:70103319:A:G	rs4286101	A	G	.	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	70642159	70642160	chr16:70642160:G:A	rs114253017	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr16	70652679	70652680	chr16:70652680:G:C	rs190344038	G	C	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	70695544	70695545	chr16:70695545:T:C	rs61756217	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr16	70751073	70751074	chr16:70751074:C:T	rs74024446	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	70751077	70751078	chr16:70751078:T:C	rs895233171	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	70875495	70875496	chr16:70875496:T:C	rs12103402	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr16	71242162	71242163	chr16:71242163:G:T	rs12051098	G	T	T	Hoxa9_MA0594.1	9	1	-	6.559551194393908	3.4917213614978166	CCCATCACTCA
chr16	71242163	71242164	chr16:71242164:A:C	rs12051093	A	C	C	Hoxa9_MA0594.1	8	1	-	6.559551194393908	1.6046552644554404	CCCATCACTCA
chr16	71294182	71294183	chr16:71294183:G:C	rs12708910	G	C	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr16	71294193	71294194	chr16:71294194:C:A	rs3114640	C	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	71340693	71340694	chr16:71340694:G:T	rs35009583	G	T	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr16	71709696	71709697	chr16:71709697:G:A	rs113706607	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	71771838	71771839	chr16:71771839:T:C	rs111941124	T	C	T	Hoxa9_MA0594.1	4	1	+	9.130625221022317	2.2218704417070962	GCTATAAATCT
chr16	71794712	71794713	chr16:71794713:C:T	rs77823468	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr16	72042522	72042523	chr16:72042523:C:G	rs77980365	C	G	C	Hoxa9_MA0594.1	9	1	+	9.123953740605721	2.325622778904873	CCCATTAATCA
chr16	72074193	72074194	chr16:72074194:G:A	rs2000999	G	A	G	Hoxa9_MA0594.1	2	1	-	7.8716420841461705	5.951311001018946	CACATCAATCT
chr16	72221367	72221368	chr16:72221368:C:T	rs55794954	C	T	C	Hoxa9_MA0594.1	2	1	+	11.205960009490326	9.285628926363104	CTCATAAATCA
chr16	72313489	72313490	chr16:72313490:A:G	rs17669981	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr16	72665665	72665666	chr16:72665666:C:T	rs16971138	C	T	C	Hoxa9_MA0594.1	0	1	+	10.627919883371188	8.082954538162921	CCCATAAATCT
chr16	72855193	72855194	chr16:72855194:A:C	rs8045691	A	C	A	Hoxa9_MA0594.1	10	1	-	7.260118532919163	2.092935434395928	GCCATCCATCT
chr16	72902670	72902671	chr16:72902671:T:G	rs4788481	T	G	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr16	73214577	73214578	chr16:73214578:T:C	rs7203017	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	73285906	73285907	chr16:73285907:A:C	rs56091557	A	C	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	73671151	73671152	chr16:73671152:C:T	rs8048857	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	73793933	73793934	chr16:73793934:G:C	rs111281863	G	C	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	74025171	74025172	chr16:74025172:G:C	rs2716587	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	74292109	74292110	chr16:74292110:T:C	rs11648645	T	C	.	Hoxa9_MA0594.1	3	1	-	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr16	74451630	74451631	chr16:74451631:T:C	rs3851729	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr16	74533489	74533490	chr16:74533490:C:T	rs1971071	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	74562284	74562285	chr16:74562285:T:A	rs8052389	T	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	74562290	74562291	chr16:74562291:G:A	rs8046158	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	74666215	74666216	chr16:74666216:A:T	rs62053585	A	T	-	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	74666219	74666220	chr16:74666220:A:T	rs4888271	A	T	-	Hoxa9_MA0594.1	10	1	-	8.061415128681777	9.53100501591131	CTAATCAATCT
chr16	74702048	74702049	chr16:74702049:G:A	rs4392103	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr16	74722031	74722032	chr16:74722032:G:A	rs12919626	G	A	G	Hoxa9_MA0594.1	5	1	-	7.147364983124122	4.727225975794434	GTCCTCAATCA
chr16	74752003	74752004	chr16:74752004:A:G	rs7185697	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	75011726	75011727	chr16:75011727:A:G	rs1954956	A	G	G	Hoxa9_MA0594.1	3	1	+	7.260118532919163	4.278322105510306	GCCATCCATCT
chr16	75242396	75242397	chr16:75242397:A:G	rs7195938	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	75286928	75286929	chr16:75286929:C:T	rs4243111	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	75404570	75404571	chr16:75404571:C:T	rs12443834	C	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	75420505	75420506	chr16:75420506:T:A	rs12444589	T	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr16	76112611	76112612	chr16:76112612:C:T	rs368277570	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	76341635	76341636	chr16:76341636:A:G	rs12325009	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	76377578	76377579	chr16:76377579:T:C	rs17766975	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	76421918	76421919	chr16:76421919:T:G	rs190991091	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	76478195	76478196	chr16:76478196:G:T	rs8059865	G	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	76615007	76615008	chr16:76615008:C:T	chr16:76615008:C:T	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	76619945	76619946	chr16:76619946:C:G	rs73629931	C	G	C	Hoxa9_MA0594.1	5	1	+	7.838158659038301	5.875431869907006	GTCATCCATCA
chr16	76654313	76654314	chr16:76654314:C:T	rs73629988	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	76670822	76670823	chr16:76670823:C:T	rs80048736	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr16	76709411	76709412	chr16:76709412:G:A	rs9921190	G	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	76722210	76722211	chr16:76722211:C:T	rs546921569	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr16	76818991	76818992	chr16:76818992:G:A	rs79417335	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr16	76819035	76819036	chr16:76819036:A:G	rs76906467	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr16	77043346	77043347	chr16:77043347:C:A	rs149510796	C	A	c	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	77115184	77115185	chr16:77115185:G:C	rs6564389	G	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr16	77403023	77403024	chr16:77403024:A:G	rs4888626	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	77497151	77497152	chr16:77497152:T:C	rs62046532	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	77537592	77537593	chr16:77537593:T:A	rs4888644	T	A	T	Hoxa9_MA0594.1	0	1	-	8.300655674909967	6.197839421645898	ATCATAAATCC
chr16	77638440	77638441	chr16:77638441:T:A	rs11150005	T	A	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	77805331	77805332	chr16:77805332:A:G	rs2966063	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	77834816	77834817	chr16:77834817:C:T	rs78651476	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr16	77856787	77856788	chr16:77856788:A:C	rs1080941	A	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	77897349	77897350	chr16:77897350:G:C	rs112043804	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr16	78001531	78001532	chr16:78001532:T:C	rs425136	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	78037097	78037098	chr16:78037098:A:T	rs76833828	A	T	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	78057952	78057953	chr16:78057953:C:A	rs115080776	C	A	c	Hoxa9_MA0594.1	0	1	-	10.057390948742912	7.089389182756294	GCCATAAATCC
chr16	78163821	78163822	chr16:78163822:C:T	rs62045115	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr16	78237168	78237169	chr16:78237169:C:T	rs8063113	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	78237199	78237200	chr16:78237200:G:A	rs11639501	G	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	78242565	78242566	chr16:78242566:G:A	rs574486818	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr16	78246547	78246548	chr16:78246548:T:C	rs4888769	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr16	78300642	78300643	chr16:78300643:A:G	rs78308730	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	78384090	78384091	chr16:78384091:T:C	rs12598242	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	78399710	78399711	chr16:78399711:C:A	rs73571016	C	A	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	78440192	78440193	chr16:78440193:G:T	rs9927016	G	T	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	78463825	78463826	chr16:78463826:T:C	rs2738658	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	78491247	78491248	chr16:78491248:G:C	rs2667582	G	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	78528488	78528489	chr16:78528489:A:T	rs72803908	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	78668730	78668731	chr16:78668731:C:T	rs2550647	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	78668758	78668759	chr16:78668759:A:G	rs2548836	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	78683774	78683775	chr16:78683775:G:T	rs9935613	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	78689722	78689723	chr16:78689723:C:T	rs8055602	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	78748822	78748823	chr16:78748823:A:G	rs12925643	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr16	78803132	78803133	chr16:78803133:T:G	rs9931801	T	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	78844612	78844613	chr16:78844613:A:G	rs1543296	A	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr16	78951142	78951143	chr16:78951143:T:C	rs8063186	T	C	T	Hoxa9_MA0594.1	3	1	-	7.959399534385545	4.977603106976686	CCAATCAATCC
chr16	79001606	79001607	chr16:79001607:A:G	rs62038698	A	G	A	Hoxa9_MA0594.1	3	1	+	11.39900822046537	8.417211793056513	GCAATAAATCA
chr16	79079371	79079372	chr16:79079372:G:A	rs6564642	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr16	79133411	79133412	chr16:79133412:T:G	rs12716869	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	79261795	79261796	chr16:79261796:C:G	chr16:79261796:C:G	C	G	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr16	79318595	79318596	chr16:79318596:T:C	rs16950223	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	79571376	79571377	chr16:79571377:G:A	rs386687	G	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	79595671	79595672	chr16:79595672:A:G	rs3826106	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr16	79606200	79606201	chr16:79606201:T:C	rs77014047	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	79672823	79672824	chr16:79672824:C:G	rs114503656	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr16	79672853	79672854	chr16:79672854:T:C	rs1424231	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	79772991	79772992	chr16:79772992:G:T	rs8057344	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr16	79789201	79789202	chr16:79789202:G:A	rs12923698	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr16	79838725	79838726	chr16:79838726:C:T	rs189493193	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr16	79980997	79980998	chr16:79980998:T:A	rs74038406	T	A	T	Hoxa9_MA0594.1	8	1	+	9.256408009457576	5.786647956358125	CCCATATATCA
chr16	80147518	80147519	chr16:80147519:C:T	rs80338555	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr16	80159023	80159024	chr16:80159024:A:C	rs12598278	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr16	80209054	80209055	chr16:80209055:T:C	rs12149918	T	C	T	Hoxa9_MA0594.1	3	1	-	7.736199956390875	4.754403528982016	CTCATAAAACA
chr16	80285315	80285316	chr16:80285316:T:C	rs2348640	T	C	T	Hoxa9_MA0594.1	8	1	-	9.050786138279621	7.565650261440604	GCCATAAAACA
chr16	80295668	80295669	chr16:80295669:C:T	rs4396547	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr16	80309327	80309328	chr16:80309328:T:C	rs8057498	T	C	t	Hoxa9_MA0594.1	3	1	-	10.53382270774282	7.552026280333961	ACAATAAATCA
chr16	80310650	80310651	chr16:80310651:A:G	rs7206097	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr16	80407453	80407454	chr16:80407454:A:C	rs9806901	A	C	A	Hoxa9_MA0594.1	6	1	+	8.007749574707272	4.77032882614221	GTCATCAATAA
chr16	80427332	80427333	chr16:80427333:C:T	rs62050423	C	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	80514744	80514745	chr16:80514745:G:C	rs71386291	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	80514745	80514746	chr16:80514746:C:T	rs4586444	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	80514773	80514774	chr16:80514774:C:A	rs4491516	C	A	A	Hoxa9_MA0594.1	10	1	+	7.301113149517894	9.764268392154055	GACATCAATCC
chr16	80586054	80586055	chr16:80586055:A:G	rs11866190	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	80592776	80592777	chr16:80592777:T:C	rs7202869	T	C	T	Hoxa9_MA0594.1	8	1	+	7.615878323456167	0.7425902733562784	CCCCTCAATCA
chr16	80663251	80663252	chr16:80663252:G:C	rs2123284	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	80663290	80663291	chr16:80663291:G:A	rs7195009	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	80718552	80718553	chr16:80718553:T:A	chr16:80718553:T:A	T	A	T	Hoxa9_MA0594.1	10	1	-	8.417211793056513	6.947621905826979	GCAGTAAATCA
chr16	81008223	81008224	chr16:81008224:T:C	rs111829199	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	81073357	81073358	chr16:81073358:C:G	rs804905	C	G	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	81448298	81448299	chr16:81448299:A:G	rs62043926	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	81559838	81559839	chr16:81559839:A:G	rs62046637	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr16	81627036	81627037	chr16:81627037:G:A	rs7188009	G	A	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	81709933	81709934	chr16:81709934:C:T	rs547353010	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr16	81936801	81936802	chr16:81936802:C:T	rs3934956	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr16	82012284	82012285	chr16:82012285:G:C	rs41526051	G	C	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	82070480	82070481	chr16:82070481:C:G	rs4398102	C	G	C	Hoxa9_MA0594.1	2	1	+	7.260118532919163	0.7362185451708239	GCCATCCATCT
chr16	82107654	82107655	chr16:82107655:C:T	rs552097011	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	82181689	82181690	chr16:82181690:T:G	rs184022284	T	G	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr16	82333530	82333531	chr16:82333531:T:A	rs9937707	T	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr16	82333549	82333550	chr16:82333550:G:A	rs9926445	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr16	82534076	82534077	chr16:82534077:A:G	rs956746	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	82534079	82534080	chr16:82534080:A:G	rs766292	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	82629682	82629683	chr16:82629683:G:T	rs12051272	G	T	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	82652407	82652408	chr16:82652408:C:G	rs974885565	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr16	82683394	82683395	chr16:82683395:C:A	rs17264872	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr16	82745268	82745269	chr16:82745269:G:A	rs76679521	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	82924656	82924657	chr16:82924657:A:G	rs8052619	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr16	82964134	82964135	chr16:82964135:C:G	rs9928039	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	83054495	83054496	chr16:83054496:C:T	rs77427913	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr16	83121688	83121689	chr16:83121689:A:G	rs34385540	A	G	A	Hoxa9_MA0594.1	10	1	+	9.285628926363104	2.6488559406103356	CTTATAAATCA
chr16	83145733	83145734	chr16:83145734:C:G	rs6565136	C	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	83232103	83232104	chr16:83232104:G:T	rs2325830	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr16	83296885	83296886	chr16:83296886:C:T	rs1424188	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr16	83296894	83296895	chr16:83296895:T:C	rs4782766	T	C	T	Hoxa9_MA0594.1	10	1	-	7.185134028456644	0.548361042703875	CCAATCCATCA
chr16	83308628	83308629	chr16:83308629:G:A	rs723919	G	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	83344310	83344311	chr16:83344311:C:A	rs1895534	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	83344311	83344312	chr16:83344312:C:T	rs565344580	C	T	c	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr16	83356431	83356432	chr16:83356432:A:G	rs996560166	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr16	83356472	83356473	chr16:83356473:A:G	rs17284098	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	83485371	83485372	chr16:83485372:A:T	rs7206140	A	T	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr16	83531254	83531255	chr16:83531255:A:C	rs11648776	A	C	A	Hoxa9_MA0594.1	5	1	+	7.7140234448373395	7.160606422172025	CCTATAAATCC
chr16	83550482	83550483	chr16:83550483:G:C	rs34457970	G	C	G	Hoxa9_MA0594.1	9	1	-	9.623761664808185	2.8254307031073385	CCTATCAATCA
chr16	83583201	83583202	chr16:83583202:A:G	rs72793486	A	G	A	Hoxa9_MA0594.1	8	1	-	7.122741879670299	0.24945382957040957	GCCCTAAATCT
chr16	83587028	83587029	chr16:83587029:C:A	rs3934664	C	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr16	83599819	83599820	chr16:83599820:A:G	rs17687469	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr16	83667159	83667160	chr16:83667160:C:T	rs73248731	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	83689391	83689392	chr16:83689392:G:C	rs12448601	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	83701043	83701044	chr16:83701044:G:A	rs3784950	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	83713247	83713248	chr16:83713248:G:C	rs1981865	G	C	G	Hoxa9_MA0594.1	9	1	-	8.234477646460217	1.4361466847593702	GTCATCTATCA
chr16	83726996	83726997	chr16:83726997:A:G	rs7198617	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	83733543	83733544	chr16:83733544:C:T	rs73236459	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	83750604	83750605	chr16:83750605:C:A	rs411454	C	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	83799520	83799521	chr16:83799521:G:T	rs17780828	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr16	83806959	83806960	chr16:83806960:G:T	rs4782557	G	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr16	83915900	83915901	chr16:83915901:T:C	rs1127382	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr16	83933540	83933541	chr16:83933541:C:T	rs773609155	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr16	84039447	84039448	chr16:84039448:G:A	rs4782879	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr16	84044563	84044564	chr16:84044564:G:T	rs34441238	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr16	84064056	84064057	chr16:84064057:T:C	rs146718931	T	C	T	Hoxa9_MA0594.1	1	1	+	7.991314647558364	8.88286440866876	GTAATGAATCA
chr16	84235004	84235005	chr16:84235005:A:G	rs1862835	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	84296555	84296556	chr16:84296556:T:C	rs1862806	T	C	T	Hoxa9_MA0594.1	3	1	-	8.655440400273676	5.6736439728648165	GTCATTAATCA
chr16	84354498	84354499	chr16:84354499:A:G	rs904138183	A	G	A	Hoxa9_MA0594.1	7	1	+	8.043175694344246	1.1402420206413262	AGCATCAATCA
chr16	84396253	84396254	chr16:84396254:A:T	rs8057866	A	T	A	Hoxa9_MA0594.1	4	1	-	7.431493751404856	0.5227389720896356	CACATAAATCC
chr16	84454215	84454216	chr16:84454216:G:A	rs171577	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr16	84464265	84464266	chr16:84464266:G:T	rs3859034	G	T	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	84478326	84478327	chr16:84478327:G:T	rs116808945	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	84497408	84497409	chr16:84497409:A:C	rs62050764	A	C	A	Hoxa9_MA0594.1	6	1	+	8.497369115614307	5.259948367049245	GCCATCAAACA
chr16	84937816	84937817	chr16:84937817:G:A	rs2934467	G	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr16	84968405	84968406	chr16:84968406:G:A	rs1566461	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr16	85004458	85004459	chr16:85004459:G:A	rs7499539	G	A	A	Hoxa9_MA0594.1	3	1	+	7.335888987410509	10.317685414819367	GACGTAAATCA
chr16	85127542	85127543	chr16:85127543:T:C	rs16975265	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	85161994	85161995	chr16:85161995:C:G	rs4238715	C	G	t	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	85162546	85162547	chr16:85162547:C:T	rs559585720	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	85162547	85162548	chr16:85162548:G:A	rs999342773	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	85168937	85168938	chr16:85168938:T:C	rs571487344	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr16	85200621	85200622	chr16:85200622:G:A	rs115786682	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr16	85301313	85301314	chr16:85301314:A:G	rs8048275	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	85302228	85302229	chr16:85302229:G:A	chr16:85302229:G:A	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	85302228	85302229	chr16:85302229:G:T	rs2968425	G	T	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr16	85413378	85413379	chr16:85413379:T:A	rs12934659	T	A	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr16	85449577	85449578	chr16:85449578:C:T	chr16:85449578:C:T	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr16	85461219	85461220	chr16:85461220:G:A	rs141009290	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	85507254	85507255	chr16:85507255:C:T	rs12596016	C	T	C	Hoxa9_MA0594.1	10	1	+	8.742804766854166	9.736370122260793	CTCATAAATCC
chr16	85647950	85647951	chr16:85647951:G:A	rs72801197	G	A	G	Hoxa9_MA0594.1	0	1	-	6.589196817996939	4.044231472788672	CCCATCAAGCA
chr16	85652682	85652683	chr16:85652683:T:G	rs573591920	T	G	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr16	85652723	85652724	chr16:85652724:G:A	rs35096969	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr16	85838607	85838608	chr16:85838608:T:C	rs13331666	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr16	85898744	85898745	chr16:85898745:C:T	rs188602	C	T	.	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	85908889	85908890	chr16:85908890:T:C	rs305079	T	C	C	Hoxa9_MA0594.1	7	1	-	8.11177607157458	1.208842397871659	CCCATGAATCT
chr16	85909859	85909860	chr16:85909860:T:C	rs305077	T	C	C	Hoxa9_MA0594.1	3	1	-	11.205960009490326	8.224163582081468	CTCATAAATCA
chr16	85938406	85938407	chr16:85938407:G:C	rs11117422	G	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr16	85938800	85938801	chr16:85938801:C:T	rs11648012	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	86031471	86031472	chr16:86031472:G:C	rs12102715	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr16	86073072	86073073	chr16:86073073:C:G	rs190082611	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr16	86084258	86084259	chr16:86084259:T:A	rs6540254	T	A	A	Hoxa9_MA0594.1	4	1	+	8.138130176594235	1.2293753972790151	CTCATAAATAA
chr16	86086511	86086512	chr16:86086512:G:C	rs59475343	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr16	86111762	86111763	chr16:86111763:T:C	rs11643956	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr16	86118386	86118387	chr16:86118387:A:C	rs1497729	A	C	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr16	86121059	86121060	chr16:86121060:G:C	rs17819804	G	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr16	86249606	86249607	chr16:86249607:G:C	rs13330764	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr16	86252047	86252048	chr16:86252048:C:A	rs12443791	C	A	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	86258608	86258609	chr16:86258609:T:A	rs4843924	T	A	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr16	86410358	86410359	chr16:86410359:C:G	rs4843944	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr16	86521976	86521977	chr16:86521977:T:C	rs6539951	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	86529358	86529359	chr16:86529359:G:A	rs186242267	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr16	86554170	86554171	chr16:86554171:G:A	rs2081232	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	86554173	86554174	chr16:86554174:C:G	rs181173527	C	G	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr16	86673033	86673034	chr16:86673034:G:C	rs74035019	G	C	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr16	86741567	86741568	chr16:86741568:A:G	rs78496295	A	G	A	Hoxa9_MA0594.1	4	1	-	11.628996430268678	4.720241650953457	GTCATAAATCA
chr16	86769176	86769177	chr16:86769177:G:A	rs75241109	G	A	G	Hoxa9_MA0594.1	9	1	-	7.8637947703911975	5.239081551806959	GCAGTCAATCA
chr16	86794261	86794262	chr16:86794262:C:G	rs35412960	C	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr16	86919930	86919931	chr16:86919931:A:G	rs569838183	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr16	86919974	86919975	chr16:86919975:G:A	rs8060943	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr16	86953886	86953887	chr16:86953887:C:G	rs4843197	C	G	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	87067139	87067140	chr16:87067140:G:T	rs4081747	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr16	87149318	87149319	chr16:87149319:C:T	chr16:87149319:C:T	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr16	87265505	87265506	chr16:87265506:G:T	rs2059882	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr16	87350004	87350005	chr16:87350005:C:T	rs76390295	C	T	C	Hoxa9_MA0594.1	2	1	+	6.559551194393908	4.639220111266686	CCCATCACTCA
chr16	87350031	87350032	chr16:87350032:C:A	rs4843598	C	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr16	87388676	87388677	chr16:87388677:A:C	chr16:87388677:A:C	A	C	A	Hoxa9_MA0594.1	4	1	-	7.618418680842992	0.7096639015277719	GCTGTAAATCA
chr16	87465679	87465680	chr16:87465680:C:T	rs146375081	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr16	87765125	87765126	chr16:87765126:G:C	rs4843266	G	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr16	87812280	87812281	chr16:87812281:C:T	rs28602621	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr16	87843205	87843206	chr16:87843206:T:C	rs28611500	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr16	87863529	87863530	chr16:87863530:T:C	rs144117488	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	88087266	88087267	chr16:88087267:C:G	rs74042708	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr16	88092100	88092101	chr16:88092101:A:G	rs8045004	A	G	A	Hoxa9_MA0594.1	3	1	+	7.3796891609982245	4.397892733589366	GCCATGAATTA
chr16	88105749	88105750	chr16:88105750:C:T	rs185942544	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr16	88163706	88163707	chr16:88163707:G:T	rs8048414	G	T	-	Hoxa9_MA0594.1	2	1	-	8.306671999370346	7.185134028456644	CCCATCCATCA
chr16	88164671	88164672	chr16:88164672:G:A	rs6540190	G	A	-	Hoxa9_MA0594.1	11	0	-	0	0	.
chr16	88195010	88195011	chr16:88195011:C:T	rs145762567	C	T	-	Hoxa9_MA0594.1	26	0	-	0	0	.
chr16	88198688	88198689	chr16:88198689:A:G	rs9938565	A	G	-	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr16	88255939	88255940	chr16:88255940:A:C	rs61235349	A	C	-	Hoxa9_MA0594.1	20	0	-	0	0	.
chr16	88561629	88561630	chr16:88561630:C:T	rs76964266	C	T	C	Hoxa9_MA0594.1	5	1	+	8.107577641616745	5.687438634287056	TTCATCAATCA
chr16	88561630	88561631	chr16:88561631:A:C	rs76534765	A	C	A	Hoxa9_MA0594.1	6	1	+	8.107577641616745	4.870156893051682	TTCATCAATCA
chr16	88602401	88602402	chr16:88602402:A:G	rs74033315	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr16	88740815	88740816	chr16:88740816:T:C	rs753602	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr16	88760929	88760930	chr16:88760930:G:A	rs112028717	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr16	89061552	89061553	chr16:89061553:C:T	rs34473463	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr16	89655246	89655247	chr16:89655247:C:T	rs78751799	C	T	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr16	89727642	89727643	chr16:89727643:G:A	rs72807539	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr16	89727643	89727644	chr16:89727644:C:A	rs72807540	C	A	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr16	89741832	89741833	chr16:89741833:T:C	rs75092208	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr16	89823248	89823249	chr16:89823249:G:C	rs72811595	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr16	90093655	90093656	chr16:90093656:A:G	rs7498369	A	G	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	179321	179322	chr17:179322:T:C	rs34891882	T	C	.	Hoxa9_MA0594.1	7	1	-	7.185134028456644	0.2822003547537242	CCAATCCATCA
chr17	181407	181408	chr17:181408:G:A	rs551529924	G	A	.	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	194607	194608	chr17:194608:C:T	rs62056998	C	T	.	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	225940	225941	chr17:225941:T:C	rs61618085	T	C	T	Hoxa9_MA0594.1	1	1	+	8.234477646460217	9.126027407570612	GTCATCTATCA
chr17	262787	262788	chr17:262788:G:A	rs28468376	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	269590	269591	chr17:269591:A:G	rs7501898	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr17	281964	281965	chr17:281965:T:G	rs12451279	T	G	t	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	283600	283601	chr17:283601:C:G	rs72631438	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr17	357316	357317	chr17:357317:C:T	rs62055036	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	375626	375627	chr17:375627:A:G	rs12946270	A	G	-	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	375761	375762	chr17:375762:T:C	rs11652383	T	C	t	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr17	375771	375772	chr17:375772:A:G	rs11651196	A	G	a	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	497558	497559	chr17:497559:G:A	rs77612020	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr17	870351	870352	chr17:870352:C:T	rs78301146	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	909250	909251	chr17:909251:T:C	rs9328723	T	C	T	Hoxa9_MA0594.1	1	1	+	7.736199956390875	8.62774971750127	CTCATAAAACA
chr17	910083	910084	chr17:910084:C:A	rs1703824	C	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	910090	910091	chr17:910091:C:G	rs550569230	C	G	C	Hoxa9_MA0594.1	0	1	+	7.277745585011086	7.700782005789437	CTCCTAAATCA
chr17	930496	930497	chr17:930497:C:T	rs11867444	C	T	-	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	952020	952021	chr17:952021:C:T	rs74680784	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr17	957985	957986	chr17:957986:G:A	rs11247570	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	1169743	1169744	chr17:1169744:G:A	rs146005869	G	A	g	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	1183252	1183253	chr17:1183253:G:T	rs73277395	G	T	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr17	1230115	1230116	chr17:1230116:C:T	rs66765552	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	1260404	1260405	chr17:1260405:T:A	rs58466372	T	A	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr17	1260428	1260429	chr17:1260429:G:T	rs115223976	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr17	1300081	1300082	chr17:1300082:G:A	rs79967867	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr17	1456360	1456361	chr17:1456361:G:A	rs539173117	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	1456385	1456386	chr17:1456386:T:G	rs7218819	T	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	1468030	1468031	chr17:1468031:C:T	rs138350458	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	1557941	1557942	chr17:1557942:C:T	rs11078495	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	2011709	2011710	chr17:2011710:A:C	rs140280289	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	2028407	2028408	chr17:2028408:T:G	rs7207749	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr17	2511398	2511399	chr17:2511399:C:G	chr17:2511399:C:G	C	G	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr17	2687838	2687839	chr17:2687839:G:T	rs77193750	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr17	2797650	2797651	chr17:2797651:C:T	rs113315111	C	T	c	Hoxa9_MA0594.1	12	0	+	0	0	.
chr17	2814138	2814139	chr17:2814139:G:C	rs140961518	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr17	2848553	2848554	chr17:2848554:C:G	rs4790369	C	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr17	2878585	2878586	chr17:2878586:A:G	rs55819344	A	G	A	Hoxa9_MA0594.1	8	1	-	8.592331766899832	1.7190437167999435	GCCCTAAATCA
chr17	2994800	2994801	chr17:2994801:T:C	rs7217169	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	3014892	3014893	chr17:3014893:T:C	rs9903645	T	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	3042120	3042121	chr17:3042121:C:T	rs66529056	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	3312643	3312644	chr17:3312644:A:G	rs804226	A	G	A	Hoxa9_MA0594.1	1	1	-	8.138130176594235	9.02967993770463	CTCATAAATAA
chr17	3880031	3880032	chr17:3880032:A:G	rs146472492	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	3918545	3918546	chr17:3918546:T:C	rs4995290	T	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr17	4062985	4062986	chr17:4062986:G:C	rs781823	G	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	4252833	4252834	chr17:4252834:T:A	rs8074058	T	A	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr17	4252864	4252865	chr17:4252865:G:A	rs8068429	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr17	4304593	4304594	chr17:4304594:A:C	rs148560560	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr17	4504416	4504417	chr17:4504417:A:G	rs9896111	A	G	A	Hoxa9_MA0594.1	10	1	+	7.838158659038301	1.2013856732855324	GTCATCCATCA
chr17	4576192	4576193	chr17:4576193:G:T	rs74251388	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	4599424	4599425	chr17:4599425:A:C	rs73973313	A	C	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	4648799	4648800	chr17:4648800:A:G	rs57586413	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	4676005	4676006	chr17:4676006:G:A	rs55884013	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	4904699	4904700	chr17:4904700:C:T	rs2661697	C	T	t	Hoxa9_MA0594.1	26	0	+	0	0	.
chr17	4946250	4946251	chr17:4946251:T:C	rs78224458	T	C	t	Hoxa9_MA0594.1	7	1	-	7.378505182244407	0.4755715085414871	CACATGAATCA
chr17	5526962	5526963	chr17:5526963:A:G	rs16954840	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	5718143	5718144	chr17:5718144:C:T	rs2716884	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr17	5809786	5809787	chr17:5809787:G:T	rs740912	G	T	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	6048319	6048320	chr17:6048320:T:C	rs12451094	T	C	T	Hoxa9_MA0594.1	4	1	+	9.53100501591131	2.6222502365960905	CTAATCAATCA
chr17	6084518	6084519	chr17:6084519:G:A	rs745732306	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr17	6084520	6084521	chr17:6084521:G:A	rs147321449	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr17	6098372	6098373	chr17:6098373:C:T	rs141838065	C	T	C	Hoxa9_MA0594.1	10	1	+	6.998622987095951	7.992188342502578	GGCATAAATCC
chr17	6374158	6374159	chr17:6374159:T:A	rs7212151	T	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	6652702	6652703	chr17:6652703:A:G	rs7226265	A	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	6676714	6676715	chr17:6676715:C:G	rs607668	C	G	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr17	6676738	6676739	chr17:6676739:T:G	chr17:6676739:T:G	T	G	T	Hoxa9_MA0594.1	3	1	-	7.260118532919163	3.331904108439922	GCCATCCATCT
chr17	6977316	6977317	chr17:6977317:A:G	rs311738	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	7016232	7016233	chr17:7016233:T:A	rs117506053	T	A	T	Hoxa9_MA0594.1	8	1	+	7.195382260064641	3.7256222069651894	CCTGTAAATCA
chr17	7044285	7044286	chr17:7044286:A:G	rs149747588	A	G	A	Hoxa9_MA0594.1	1	1	+	7.84393730902683	6.988030123939574	GATATCAATCA
chr17	7047601	7047602	chr17:7047602:G:T	rs34353685	G	T	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr17	7052125	7052126	chr17:7052126:G:A	rs17203148	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	7077284	7077285	chr17:7077285:C:T	rs60019421	C	T	-	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	7301654	7301655	chr17:7301655:G:T	rs12949545	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	7331996	7331997	chr17:7331997:G:C	rs8081264	G	C	G	Hoxa9_MA0594.1	9	1	-	8.300655674909967	1.5023247132091198	ATCATAAATCC
chr17	7389406	7389407	chr17:7389407:C:T	rs2075760	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	7422803	7422804	chr17:7422804:A:G	rs11652328	A	G	G	Hoxa9_MA0594.1	8	1	-	8.773111023127315	1.8998229730274256	CAAATAAATCA
chr17	7550601	7550602	chr17:7550602:C:T	rs12940684	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	7574158	7574159	chr17:7574159:A:G	rs4968214	A	G	G	Hoxa9_MA0594.1	8	1	-	10.497539281484224	3.6242512313843345	GCCATCAATCT
chr17	7641932	7641933	chr17:7641933:C:T	rs1642807	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	7666870	7666871	chr17:7666871:T:C	rs9893249	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	7728375	7728376	chr17:7728376:G:T	rs62062609	G	T	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	7887663	7887664	chr17:7887664:A:C	rs1026842230	A	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	7943794	7943795	chr17:7943795:A:G	rs7209540	A	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	8015171	8015172	chr17:8015172:T:C	rs3813585	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	8248921	8248922	chr17:8248922:C:G	rs7221547	C	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr17	8281231	8281232	chr17:8281232:T:C	rs62063148	T	C	c	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	8383283	8383284	chr17:8383284:G:T	rs541954604	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	8383315	8383316	chr17:8383316:G:A	rs569869931	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	8403243	8403244	chr17:8403244:C:G	rs75128209	C	G	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	8698153	8698154	chr17:8698154:T:C	rs143515824	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr17	8700835	8700836	chr17:8700836:T:C	rs1017346	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	8722691	8722692	chr17:8722692:A:C	rs7219141	A	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	8862094	8862095	chr17:8862095:C:T	rs8067644	C	T	C	Hoxa9_MA0594.1	0	1	-	7.065001658177677	6.199816145455126	GCTGTCAATCA
chr17	8963373	8963374	chr17:8963374:C:T	rs75622745	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	9004097	9004098	chr17:9004098:A:C	rs11868829	A	C	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	9068118	9068119	chr17:9068119:C:G	rs111789273	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	9212087	9212088	chr17:9212088:G:A	rs718097	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	9346792	9346793	chr17:9346793:A:G	rs59987625	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr17	9445034	9445035	chr17:9445035:G:A	rs77390832	G	A	G	Hoxa9_MA0594.1	2	1	-	7.8716420841461705	5.951311001018946	CACATCAATCT
chr17	9968226	9968227	chr17:9968227:C:G	rs7213443	C	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr17	9968257	9968258	chr17:9968258:G:C	rs9915332	G	C	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	9968976	9968977	chr17:9968977:G:C	rs139136952	G	C	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	10088664	10088665	chr17:10088665:T:C	rs142234929	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	10127165	10127166	chr17:10127166:A:G	rs6503287	A	G	G	Hoxa9_MA0594.1	0	1	+	7.727146254177281	8.592331766899832	ACCCTAAATCA
chr17	10251832	10251833	chr17:10251833:G:A	rs8079574	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	10252184	10252185	chr17:10252185:C:A	rs4239112	C	A	A	Hoxa9_MA0594.1	3	1	-	7.228597467471953	3.3676572522731245	ATCGTCAATCA
chr17	10292807	10292808	chr17:10292808:G:C	rs2016196	G	C	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	10613935	10613936	chr17:10613936:G:C	rs371481235	G	C	G	Hoxa9_MA0594.1	2	1	-	7.727146254177281	1.2032462664289425	ACCCTAAATCA
chr17	10755447	10755448	chr17:10755448:G:A	rs7211233	G	A	G	Hoxa9_MA0594.1	1	1	-	9.581365958804113	8.689816197693718	CCCATGAATCA
chr17	10790026	10790027	chr17:10790027:G:A	rs113013719	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr17	10790046	10790047	chr17:10790047:T:C	rs78558409	T	C	t	Hoxa9_MA0594.1	7	1	-	7.015734899058914	0.11280122535599352	CGCATCAATCT
chr17	10880553	10880554	chr17:10880554:C:T	rs2304965	C	T	.	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	10896688	10896689	chr17:10896689:C:A	rs202596	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	10907073	10907074	chr17:10907074:T:C	rs2159054	T	C	T	Hoxa9_MA0594.1	0	1	-	10.53382270774282	11.39900822046537	ACAATAAATCA
chr17	10912115	10912116	chr17:10912116:G:A	rs80089901	G	A	g	Hoxa9_MA0594.1	14	0	-	0	0	.
chr17	11242217	11242218	chr17:11242218:T:G	rs72635524	T	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	11242220	11242221	chr17:11242221:T:G	rs1468933412	T	G	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	11332803	11332804	chr17:11332804:A:G	rs205035	A	G	G	Hoxa9_MA0594.1	5	1	+	8.351258581102782	5.835114769306172	CCAATAAATTA
chr17	11528934	11528935	chr17:11528935:G:A	rs4792146	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr17	11690966	11690967	chr17:11690967:T:C	rs7207235	T	C	T	Hoxa9_MA0594.1	2	1	-	7.375831144700604	1.9734691278659673	GCAATCAAACA
chr17	11711250	11711251	chr17:11711251:T:C	rs10153244	T	C	T	Hoxa9_MA0594.1	7	1	-	7.065001658177677	0.16206798447475768	GCTGTCAATCA
chr17	11742911	11742912	chr17:11742912:T:C	rs9906083	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	12472418	12472419	chr17:12472419:G:A	rs7223279	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	12472457	12472458	chr17:12472458:T:C	rs2159537	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	12709314	12709315	chr17:12709315:C:T	rs55986665	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr17	12972948	12972949	chr17:12972949:T:C	rs75780741	T	C	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	13158968	13158969	chr17:13158969:T:C	rs2529899	T	C	t	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	13158974	13158975	chr17:13158975:G:A	rs114075133	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	13204872	13204873	chr17:13204873:G:A	rs9674785	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	13429810	13429811	chr17:13429811:C:T	rs3884646	C	T	c	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	13549065	13549066	chr17:13549066:C:T	rs563554075	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	13569580	13569581	chr17:13569581:C:T	rs116546659	C	T	C	Hoxa9_MA0594.1	3	1	-	7.022605952173604	10.004402379582464	GCCGTGAATCA
chr17	13594074	13594075	chr17:13594075:C:T	rs9898644	C	T	T	Hoxa9_MA0594.1	0	1	+	7.615878323456167	5.070912978247899	CCCCTCAATCA
chr17	13647796	13647797	chr17:13647797:G:T	rs576142428	G	T	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	13785591	13785592	chr17:13785592:C:T	rs73255845	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	14341124	14341125	chr17:14341125:G:C	rs61202270	G	C	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr17	14353385	14353386	chr17:14353386:C:T	rs7226075	C	T	C	Hoxa9_MA0594.1	1	1	+	8.707588800243967	7.816039039133571	CCTATAAATCT
chr17	14777212	14777213	chr17:14777213:G:A	rs17708352	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	14810983	14810984	chr17:14810984:T:G	rs9303119	T	G	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr17	14974712	14974713	chr17:14974713:A:G	rs2041272	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	15017747	15017748	chr17:15017748:C:T	rs917541	C	T	C	Hoxa9_MA0594.1	2	1	+	7.8716420841461705	5.951311001018946	CACATCAATCT
chr17	15019562	15019563	chr17:15019563:A:G	rs9906341	A	G	G	Hoxa9_MA0594.1	1	1	+	8.425059106811483	7.569151921724227	CACATAAATCT
chr17	15049680	15049681	chr17:15049681:T:C	rs16950913	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	15171510	15171511	chr17:15171511:A:G	rs61005271	A	G	A	Hoxa9_MA0594.1	8	1	-	8.510815797847973	1.6375277477480834	ACAATCAATCT
chr17	15308457	15308458	chr17:15308458:C:A	rs3760305	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	15349222	15349223	chr17:15349223:G:A	rs184877310	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	15349247	15349248	chr17:15349248:C:T	rs2610064	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr17	15448064	15448065	chr17:15448065:C:T	rs2954773	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	15451900	15451901	chr17:15451901:A:G	rs2954777	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr17	15497363	15497364	chr17:15497364:T:C	rs1548681	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	15784832	15784833	chr17:15784833:G:T	rs4792677	G	T	g	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr17	15893406	15893407	chr17:15893407:A:G	rs9913234	A	G	a	Hoxa9_MA0594.1	16	0	+	0	0	.
chr17	15972620	15972621	chr17:15972621:A:G	rs2779211	A	G	A	Hoxa9_MA0594.1	3	1	+	7.1129682170592226	4.131171789650365	CCCATAACTCA
chr17	16341069	16341070	chr17:16341070:T:C	rs714285	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr17	17058063	17058064	chr17:17058064:G:A	rs78763822	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr17	17144303	17144304	chr17:17144304:T:G	rs60403917	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr17	17376457	17376458	chr17:17376458:C:A	rs539694727	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	17453440	17453441	chr17:17453441:C:T	rs1242479	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	17475952	17475953	chr17:17475953:A:C	rs1242499	A	C	C	Hoxa9_MA0594.1	7	1	+	8.53481249235293	3.55027093881143	GCCATGAATCT
chr17	17621928	17621929	chr17:17621929:A:G	rs11871738	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	17641720	17641721	chr17:17641721:G:A	rs74745677	G	A	g	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	17690424	17690425	chr17:17690425:T:C	rs573164609	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	17711082	17711083	chr17:17711083:G:A	rs574806117	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	17731235	17731236	chr17:17731236:C:T	rs71367414	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr17	17867040	17867041	chr17:17867041:G:A	rs11657074	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	17877742	17877743	chr17:17877743:C:G	rs112567218	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr17	17916342	17916343	chr17:17916343:G:A	rs7208190	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	17973781	17973782	chr17:17973782:C:T	rs11870660	C	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	18153852	18153853	chr17:18153853:A:T	rs712270	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	18872706	18872707	chr17:18872707:A:T	rs7503678	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	19514447	19514448	chr17:19514448:G:A	rs7222869	G	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	19756777	19756778	chr17:19756778:C:T	rs539509171	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	19898147	19898148	chr17:19898148:T:C	rs117977037	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	20079159	20079160	chr17:20079160:G:A	rs4925078	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr17	20094556	20094557	chr17:20094557:T:C	rs7208025	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	20264297	20264298	chr17:20264298:T:C	rs2526465	T	C	.	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	20276782	20276783	chr17:20276783:A:T	rs72832506	A	T	.	Hoxa9_MA0594.1	21	0	+	0	0	.
chr17	20400735	20400736	chr17:20400736:C:T	rs115465086	C	T	.	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr17	20762368	20762369	chr17:20762369:T:C	rs11658561	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr17	21039283	21039284	chr17:21039284:T:C	rs537160981	T	C	T	Hoxa9_MA0594.1	5	1	-	7.581196251050087	5.065052439253478	GCCATAAAACT
chr17	21205293	21205294	chr17:21205294:C:T	rs184509898	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr17	21205321	21205322	chr17:21205322:A:T	rs28550107	A	T	A	Hoxa9_MA0594.1	10	1	+	7.801541603022757	6.331951715793224	GACATGAATCA
chr17	21324730	21324731	chr17:21324731:G:A	rs8077614	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	21345129	21345130	chr17:21345130:T:C	rs35555831	T	C	C	Hoxa9_MA0594.1	2	1	-	9.980405685077507	4.578043668242868	ACAATCAATCA
chr17	21402107	21402108	chr17:21402108:C:G	rs12947357	C	G	c	Hoxa9_MA0594.1	9	1	+	7.260118532919163	0.4617875712183161	GCCATCCATCT
chr17	21515513	21515514	chr17:21515514:C:T	rs7217253	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	21689517	21689518	chr17:21689518:C:T	rs1374688979	C	T	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	21694571	21694572	chr17:21694572:T:C	rs1416491783	T	C	.	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	21715326	21715327	chr17:21715327:G:A	rs1214838523	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	21753332	21753333	chr17:21753333:A:T	rs1358556365	A	T	.	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	21763275	21763276	chr17:21763276:C:A	rs1262537612	C	A	.	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	22132118	22132119	chr17:22132119:A:C	rs80109279	A	C	.	Hoxa9_MA0594.1	10	1	+	7.378505182244407	4.915349939608246	CACATGAATCA
chr17	26986877	26986878	chr17:26986878:T:C	rs4528610	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr17	27504809	27504810	chr17:27504810:C:T	rs72847754	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	27580794	27580795	chr17:27580795:A:G	rs183794405	A	G	a	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	27871354	27871355	chr17:27871355:A:G	rs4796172	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr17	27892883	27892884	chr17:27892884:T:C	rs115063805	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	27952046	27952047	chr17:27952047:C:G	rs145855253	C	G	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	27991560	27991561	chr17:27991561:A:G	rs4795195	A	G	A	Hoxa9_MA0594.1	3	1	+	10.317685414819367	7.335888987410509	GACATAAATCA
chr17	28498875	28498876	chr17:28498876:T:G	rs79677589	T	G	T	Hoxa9_MA0594.1	8	1	+	12.520546191379072	7.565650261440604	GCCATAAATCA
chr17	28836276	28836277	chr17:28836277:C:A	rs7211502	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr17	28968528	28968529	chr17:28968529:A:G	rs78265409	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	29027839	29027840	chr17:29027840:A:T	rs873364	A	T	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	29031957	29031958	chr17:29031958:C:T	rs8073912	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	29049532	29049533	chr17:29049533:C:T	rs8067658	C	T	T	Hoxa9_MA0594.1	6	1	+	7.260118532919163	7.656437520341079	GCCATCCATCT
chr17	29092075	29092076	chr17:29092076:G:T	rs114814913	G	T	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	29252624	29252625	chr17:29252625:G:C	rs147510652	G	C	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	29368811	29368812	chr17:29368812:T:C	rs117743214	T	C	T	Hoxa9_MA0594.1	7	1	-	8.638788413355046	1.7358547396521267	ACCATCAATCC
chr17	30188413	30188414	chr17:30188414:A:G	rs556657059	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	30234736	30234737	chr17:30234737:A:T	rs2020933	A	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr17	30824759	30824760	chr17:30824760:C:T	rs905766930	C	T	.	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	30824763	30824764	chr17:30824764:T:A	rs553015665	T	A	.	Hoxa9_MA0594.1	26	0	-	0	0	.
chr17	30824807	30824808	chr17:30824808:C:A	rs7213542	C	A	.	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	30970673	30970674	chr17:30970674:C:T	rs115507799	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	30998004	30998005	chr17:30998005:G:C	rs12453269	G	C	g	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	31155682	31155683	chr17:31155683:C:T	rs2269856	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	31316543	31316544	chr17:31316544:C:A	rs116748018	C	A	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	31439406	31439407	chr17:31439407:C:T	rs2525580	C	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	31439407	31439408	chr17:31439408:T:C	rs2521782	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr17	31470362	31470363	chr17:31470363:G:A	rs12453638	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	31561574	31561575	chr17:31561575:A:G	rs75259244	A	G	a	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	31561898	31561899	chr17:31561899:G:A	rs116767492	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	31579581	31579582	chr17:31579582:A:G	rs17246483	A	G	A	Hoxa9_MA0594.1	4	1	-	9.285628926363104	2.376874147047883	CTTATAAATCA
chr17	31628035	31628036	chr17:31628036:C:G	rs315458	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	31696307	31696308	chr17:31696308:T:C	rs7219892	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	31696311	31696312	chr17:31696312:A:G	rs1265403321	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	32230311	32230312	chr17:32230312:T:C	rs10468587	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	32303600	32303601	chr17:32303601:A:G	rs112903291	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr17	32343113	32343114	chr17:32343114:C:A	rs561147970	C	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	32483901	32483902	chr17:32483902:A:G	rs554183385	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	32520928	32520929	chr17:32520929:C:T	rs537207703	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	32658450	32658451	chr17:32658451:A:G	rs2729337	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	32771685	32771686	chr17:32771686:G:C	rs76028084	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	32921133	32921134	chr17:32921134:G:A	rs148707374	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	32944250	32944251	chr17:32944251:A:G	rs3025287	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	33131811	33131812	chr17:33131812:C:T	rs75272664	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr17	33280851	33280852	chr17:33280852:G:A	rs1532457	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr17	33396998	33396999	chr17:33396999:C:A	rs4353517	C	A	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	33425565	33425566	chr17:33425566:A:G	rs4795782	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr17	33438412	33438413	chr17:33438413:G:A	rs11080220	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	33438436	33438437	chr17:33438437:A:G	rs1038513081	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr17	33508832	33508833	chr17:33508833:C:T	rs72823236	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr17	33528806	33528807	chr17:33528807:G:A	rs17249607	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	33626718	33626719	chr17:33626719:A:T	rs9911526	A	T	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	33957030	33957031	chr17:33957031:T:C	rs9902981	T	C	T	Hoxa9_MA0594.1	7	1	-	8.07066746510666	1.167733791403739	ACAATAAATCC
chr17	34248632	34248633	chr17:34248633:C:T	rs77251345	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	34402060	34402061	chr17:34402061:A:G	rs212487	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	34412573	34412574	chr17:34412574:A:G	rs159247	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	34418613	34418614	chr17:34418614:T:G	rs159244	T	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	34457382	34457383	chr17:34457383:G:A	rs73276272	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr17	34641988	34641989	chr17:34641989:G:A	rs12602358	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	34646062	34646063	chr17:34646063:C:T	rs11869649	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	34646075	34646076	chr17:34646076:A:G	rs55789171	A	G	A	Hoxa9_MA0594.1	7	1	+	8.899082879431504	1.996149205728583	AACATCAATCA
chr17	34670980	34670981	chr17:34670981:T:G	rs4795019	T	G	T	Hoxa9_MA0594.1	3	1	-	7.0122332387752895	3.0840188142960496	GCCATCAAGCA
chr17	34670982	34670983	chr17:34670983:G:A	rs6416978	G	A	A	Hoxa9_MA0594.1	1	1	-	7.0122332387752895	6.120683477664895	GCCATCAAGCA
chr17	34684423	34684424	chr17:34684424:A:T	rs4795968	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	34702778	34702779	chr17:34702779:T:C	rs11652872	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	34725187	34725188	chr17:34725188:G:A	rs138462188	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr17	34739028	34739029	chr17:34739029:G:T	rs4795997	G	T	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr17	34761135	34761136	chr17:34761136:G:A	rs34081539	G	A	G	Hoxa9_MA0594.1	10	1	-	6.266553177512536	7.260118532919163	GCCATCCATCC
chr17	34894441	34894442	chr17:34894442:A:G	rs11080312	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	34981881	34981882	chr17:34981882:A:T	rs140520392	A	T	A	Hoxa9_MA0594.1	1	1	-	11.205960009490326	9.894648994041017	CTCATAAATCA
chr17	35257476	35257477	chr17:35257477:A:G	rs17547894	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	35345686	35345687	chr17:35345687:G:C	rs11080339	G	C	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	35490476	35490477	chr17:35490477:G:T	rs79125027	G	T	G	Hoxa9_MA0594.1	2	1	-	8.300655674909967	7.179117703996264	ATCATAAATCC
chr17	35510235	35510236	chr17:35510236:G:T	rs55661426	G	T	g	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	36079547	36079548	chr17:36079548:A:G	rs11651881	A	G	G	Hoxa9_MA0594.1	6	1	+	8.33117838756928	1.5135776018136227	GCAATAAATAA
chr17	36089945	36089946	chr17:36089946:G:A	rs35511254	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	36147095	36147096	chr17:36147096:A:G	rs2106883	A	G	A	Hoxa9_MA0594.1	7	1	+	9.00428321168444	2.101349537981519	GTCATAAATTA
chr17	36148877	36148878	chr17:36148878:T:C	rs139386143	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr17	36204555	36204556	chr17:36204556:C:G	rs1375141658	C	G	.	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr17	36207446	36207447	chr17:36207447:T:C	rs146271493	T	C	.	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	36207463	36207464	chr17:36207464:A:G	rs112816521	A	G	.	Hoxa9_MA0594.1	6	1	+	8.561166597372587	1.7435658116169295	GTCATAAATAA
chr17	36594896	36594897	chr17:36594897:C:T	rs2285639	C	T	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	36613406	36613407	chr17:36613407:G:C	rs17693404	G	C	G	Hoxa9_MA0594.1	1	1	-	8.68180464866152	5.623036687014558	ACCATTAATCA
chr17	36701493	36701494	chr17:36701494:C:T	rs4796244	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	36732531	36732532	chr17:36732532:T:C	rs8078398	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	37047797	37047798	chr17:37047798:G:C	rs7225497	G	C	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	37676423	37676424	chr17:37676424:C:T	rs76481015	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	37677537	37677538	chr17:37677538:G:A	rs3094519	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	37683730	37683731	chr17:37683731:A:G	rs17138522	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	37710306	37710307	chr17:37710307:T:G	chr17:37710307:T:G	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr17	37842765	37842766	chr17:37842766:G:A	rs117808249	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr17	37848702	37848703	chr17:37848703:T:A	rs11868601	T	A	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	38256141	38256142	chr17:38256142:C:A	rs35727513	C	A	-	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	38752418	38752419	chr17:38752419:C:A	rs2019203	C	A	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	38752445	38752446	chr17:38752446:G:A	chr17:38752446:G:A	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	38794419	38794420	chr17:38794420:T:G	rs4794790	T	G	T	Hoxa9_MA0594.1	4	1	+	8.007749574707272	1.0989947953920516	GTCATCAATAA
chr17	38981040	38981041	chr17:38981041:A:G	rs62075223	A	G	a	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	38981045	38981046	chr17:38981046:C:T	rs9893946	C	T	N	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	39067382	39067383	chr17:39067383:T:C	rs3254	T	C	T	Hoxa9_MA0594.1	8	1	+	8.707588800243967	1.8343007501440771	CCTATAAATCT
chr17	39152364	39152365	chr17:39152365:A:G	rs3025193	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	39364195	39364196	chr17:39364196:T:C	rs9908131	T	C	T	Hoxa9_MA0594.1	4	1	+	8.45982798789041	1.5510732085751902	CCAATGAATCA
chr17	39390287	39390288	chr17:39390288:G:A	rs117243039	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	39607387	39607388	chr17:39607388:C:T	rs142654662	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	39632689	39632690	chr17:39632690:C:T	rs967798776	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	39634685	39634686	chr17:39634686:C:T	rs3764352	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr17	39659050	39659051	chr17:39659051:G:C	rs11556624	G	C	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	39695789	39695790	chr17:39695790:T:G	chr17:39695790:T:G	T	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr17	40111350	40111351	chr17:40111351:G:C	rs79330516	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	40111356	40111357	chr17:40111357:C:T	rs12940340	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	40461094	40461095	chr17:40461095:T:C	rs72819632	T	C	T	Hoxa9_MA0594.1	7	1	-	8.476262915039317	1.5733292413363964	CCCATCAATAA
chr17	40478114	40478115	chr17:40478115:G:C	rs9895505	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	40607613	40607614	chr17:40607614:T:A	rs803123	T	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	40698153	40698154	chr17:40698154:G:A	rs2429549	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr17	40820463	40820464	chr17:40820464:C:T	rs1799915	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	41060343	41060344	chr17:41060344:A:C	rs349775	A	C	A	Hoxa9_MA0594.1	7	1	+	7.811441225681866	2.8268996721403674	CTCATCTATCA
chr17	41092054	41092055	chr17:41092055:A:G	rs4986672	A	G	a	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr17	41179594	41179595	chr17:41179595:G:A	rs2191376	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	41252776	41252777	chr17:41252777:A:T	rs2191378	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	41522444	41522445	chr17:41522445:C:T	rs4796669	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr17	41522463	41522464	chr17:41522464:T:C	rs4796667	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	41549752	41549753	chr17:41549753:C:G	rs117748589	C	G	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	41549774	41549775	chr17:41549775:T:A	rs10512486	T	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	41594332	41594333	chr17:41594333:A:G	rs11659133	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	41793958	41793959	chr17:41793959:A:C	chr17:41793959:A:C	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	41970119	41970120	chr17:41970120:G:A	rs55955100	G	A	g	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	42069025	42069026	chr17:42069026:G:C	rs149074824	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	42215971	42215972	chr17:42215972:G:A	rs16967580	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr17	42242071	42242072	chr17:42242072:C:T	rs6503691	C	T	T	Hoxa9_MA0594.1	1	1	+	8.077400274154538	7.185850513044142	GCCATTAATCT
chr17	42390191	42390192	chr17:42390192:G:C	rs4796793	G	C	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr17	42459881	42459882	chr17:42459882:A:G	rs8064416	A	G	a	Hoxa9_MA0594.1	7	1	+	7.811441225681866	0.9085075519789467	CTCATCTATCA
chr17	42660907	42660908	chr17:42660908:C:G	rs181123096	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	42660908	42660909	chr17:42660909:C:T	rs1475142565	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr17	42756584	42756585	chr17:42756585:G:C	rs60399446	G	C	c	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr17	43140305	43140306	chr17:43140306:T:C	rs1135214	T	C	t	Hoxa9_MA0594.1	1	1	+	10.507458459354975	11.39900822046537	GTAATAAATCA
chr17	43398574	43398575	chr17:43398575:T:C	rs1871338	T	C	a	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	43582492	43582493	chr17:43582493:G:A	rs9916264	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	43632139	43632140	chr17:43632140:G:A	rs556197	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	43632166	43632167	chr17:43632167:G:A	rs9905917	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	43656757	43656758	chr17:43656758:C:T	rs56119632	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	43656767	43656768	chr17:43656768:T:C	rs1811196	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	43897882	43897883	chr17:43897883:C:G	rs231498	C	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr17	44007781	44007782	chr17:44007782:T:C	rs228773	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	44108151	44108152	chr17:44108152:G:A	rs79104098	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	44360385	44360386	chr17:44360386:G:A	rs708383	G	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	44533953	44533954	chr17:44533954:A:G	rs543272118	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	44898745	44898746	chr17:44898746:C:T	rs8068761	C	T	T	Hoxa9_MA0594.1	0	1	-	7.929248167365919	7.064062654643368	GCAATAAAACA
chr17	44998324	44998325	chr17:44998325:G:A	rs12452088	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	45151931	45151932	chr17:45151932:A:C	rs8070447	A	C	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr17	45439885	45439886	chr17:45439886:T:C	rs35489312	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	45580963	45580964	chr17:45580964:G:A	rs769376	G	A	.	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	45583666	45583667	chr17:45583667:T:C	rs1627430	T	C	.	Hoxa9_MA0594.1	1	1	+	9.037868572125442	9.929418333235837	GTAATAAATCT
chr17	45584434	45584435	chr17:45584435:T:G	rs2668699	T	G	.	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	45648893	45648894	chr17:45648894:C:T	rs1037500390	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr17	45701039	45701040	chr17:45701040:A:G	rs17688875	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr17	45731897	45731898	chr17:45731898:T:G	rs62054393	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	45737969	45737970	chr17:45737970:A:G	rs56298110	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	45752037	45752038	chr17:45752038:C:T	rs1880755	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	45752038	45752039	chr17:45752039:G:A	rs35350903	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	45951429	45951430	chr17:45951430:T:C	rs77017444	T	C	C	Hoxa9_MA0594.1	5	1	-	8.300655674909967	5.784511863113356	ATCATAAATCC
chr17	45952864	45952865	chr17:45952865:T:C	rs17650633	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr17	46262886	46262887	chr17:46262887:A:G	rs2532348	A	G	.	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr17	46269798	46269799	chr17:46269799:T:C	rs2732656	T	C	.	Hoxa9_MA0594.1	14	0	+	0	0	.
chr17	46738765	46738766	chr17:46738766:G:T	rs12325819	G	T	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	46904099	46904100	chr17:46904100:T:C	rs1638446	T	C	t	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	46968527	46968528	chr17:46968528:C:T	rs28451958	C	T	c	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	46968528	46968529	chr17:46968529:A:G	rs28553405	A	G	g	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr17	47200640	47200641	chr17:47200641:A:T	rs4968308	A	T	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	47201328	47201329	chr17:47201329:T:C	rs113960885	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr17	47201369	47201370	chr17:47201370:T:G	rs190370602	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr17	47201396	47201397	chr17:47201397:C:A	rs73316010	C	A	C	Hoxa9_MA0594.1	0	1	-	12.520546191379072	9.552544425392455	GCCATAAATCA
chr17	47204766	47204767	chr17:47204767:A:T	rs111487688	A	T	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	47277176	47277177	chr17:47277177:G:C	rs16941801	G	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	47350532	47350533	chr17:47350533:T:G	rs16941908	T	G	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	47734182	47734183	chr17:47734183:G:T	rs41519545	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	47947053	47947054	chr17:47947054:T:G	rs189065288	T	G	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	48023452	48023453	chr17:48023453:C:A	rs62064878	C	A	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	48519746	48519747	chr17:48519747:T:G	rs11652125	T	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	48575154	48575155	chr17:48575155:A:G	rs79057155	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr17	48577718	48577719	chr17:48577719:G:A	rs114727888	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	48626530	48626531	chr17:48626531:C:T	rs117606009	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	48706535	48706536	chr17:48706536:A:G	rs3110604	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	48992887	48992888	chr17:48992888:A:G	rs67645835	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	49146720	49146721	chr17:49146721:G:A	rs12452344	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	49197440	49197441	chr17:49197441:C:T	rs112702414	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	49341335	49341336	chr17:49341336:T:C	rs12943264	T	C	T	Hoxa9_MA0594.1	7	1	-	7.260118532919163	0.35718485921624316	GCCATCCATCT
chr17	49470293	49470294	chr17:49470294:T:C	rs753683150	T	C	T	Hoxa9_MA0594.1	3	1	-	10.004402379582464	7.022605952173604	GCCATGAATCA
chr17	50112678	50112679	chr17:50112679:A:G	rs62060029	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr17	50144768	50144769	chr17:50144769:A:G	rs12451282	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	50253682	50253683	chr17:50253683:G:A	rs11653170	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	50319090	50319091	chr17:50319091:T:C	rs71379398	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	50352376	50352377	chr17:50352377:C:T	rs72832444	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	50403191	50403192	chr17:50403192:G:A	rs117262720	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr17	50423917	50423918	chr17:50423918:T:C	rs116663398	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	50519752	50519753	chr17:50519753:C:T	rs28498091	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	50558635	50558636	chr17:50558636:G:T	rs1014114240	G	T	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr17	50566318	50566319	chr17:50566319:C:T	rs198539	C	T	T	Hoxa9_MA0594.1	5	1	+	8.91937952935117	6.4992405220214815	CCCATCAATTA
chr17	50671193	50671194	chr17:50671194:T:G	rs73346364	T	G	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	50841883	50841884	chr17:50841884:C:T	rs145488779	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	50944881	50944882	chr17:50944882:C:G	rs9890711	C	G	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	51184388	51184389	chr17:51184389:T:C	rs8069453	T	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	51356143	51356144	chr17:51356144:A:G	rs7215513	A	G	A	Hoxa9_MA0594.1	10	1	+	7.7868232361530945	1.1500502504003256	GGAATCAATCA
chr17	51667139	51667140	chr17:51667140:T:C	rs9912507	T	C	c	Hoxa9_MA0594.1	3	1	-	8.62774971750127	5.645953290092412	CCCATAAAACA
chr17	51805493	51805494	chr17:51805494:T:A	rs1196329257	T	A	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	52695523	52695524	chr17:52695524:A:G	rs1343951	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	52695542	52695543	chr17:52695543:T:C	rs1343952	T	C	T	Hoxa9_MA0594.1	3	1	-	10.1771786874735	7.195382260064641	CCTATAAATCA
chr17	53275708	53275709	chr17:53275709:A:C	rs75261020	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	53749149	53749150	chr17:53749150:T:C	rs4794459	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	53949772	53949773	chr17:53949773:A:G	rs116275851	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	54172836	54172837	chr17:54172837:T:C	rs1014045825	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr17	54573619	54573620	chr17:54573620:C:T	rs7213997	C	T	C	Hoxa9_MA0594.1	1	1	+	8.18560062555707	7.294050864446675	ACCATAAAACA
chr17	54865829	54865830	chr17:54865830:A:G	rs16955263	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr17	54891343	54891344	chr17:54891344:C:G	rs180701641	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	54891376	54891377	chr17:54891377:C:T	rs72840955	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	54945239	54945240	chr17:54945240:C:G	rs35717159	C	G	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	54957266	54957267	chr17:54957267:T:A	rs17817877	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr17	55179217	55179218	chr17:55179218:C:T	rs714897	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr17	55274183	55274184	chr17:55274184:G:A	rs9910340	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	55355946	55355947	chr17:55355947:T:G	rs4794568	T	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr17	55474031	55474032	chr17:55474032:A:G	rs12937392	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	55526592	55526593	chr17:55526593:T:C	rs1911716	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	55526602	55526603	chr17:55526603:T:C	rs144927312	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr17	55654217	55654218	chr17:55654218:G:A	rs8074638	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	55710918	55710919	chr17:55710919:A:G	rs2033111	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	56542226	56542227	chr17:56542227:C:A	rs9898902	C	A	A	Hoxa9_MA0594.1	9	1	+	10.53382270774282	7.465992874846728	ACAATAAATCA
chr17	56595633	56595634	chr17:56595634:G:A	chr17:56595634:G:A	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	56598901	56598902	chr17:56598902:C:T	rs1204315188	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	56915920	56915921	chr17:56915921:A:G	rs59023417	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	56918374	56918375	chr17:56918375:T:A	rs11869532	T	A	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	57004424	57004425	chr17:57004425:G:A	rs188802591	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr17	57016783	57016784	chr17:57016784:A:G	rs880266	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr17	57196318	57196319	chr17:57196319:G:A	rs113074665	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	57215515	57215516	chr17:57215516:G:A	rs117315642	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr17	57254858	57254859	chr17:57254859:C:T	rs35136497	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	57288620	57288621	chr17:57288621:C:T	rs191108430	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	57379523	57379524	chr17:57379524:G:C	chr17:57379524:G:C	G	C	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	57457078	57457079	chr17:57457079:G:A	rs2099915	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	57542051	57542052	chr17:57542052:G:A	rs142035871	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	57670514	57670515	chr17:57670515:A:G	rs12936919	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	57700013	57700014	chr17:57700014:C:T	rs17736913	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	57700085	57700086	chr17:57700086:C:T	rs8065258	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	57700091	57700092	chr17:57700092:T:G	rs1392243773	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	57700112	57700113	chr17:57700113:C:T	rs565099575	C	T	C	Hoxa9_MA0594.1	3	1	-	7.64612345596233	10.627919883371188	CCCGTAAATCT
chr17	57751001	57751002	chr17:57751002:C:T	rs115092658	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	57812264	57812265	chr17:57812265:G:A	rs16942405	G	A	A	Hoxa9_MA0594.1	2	1	-	7.8716420841461705	5.951311001018946	CACATCAATCT
chr17	57833744	57833745	chr17:57833745:A:G	rs151281560	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr17	57882184	57882185	chr17:57882185:G:T	rs3785491	G	T	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	57912296	57912297	chr17:57912297:G:A	rs768259601	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	57926819	57926820	chr17:57926820:A:C	rs16942526	A	C	A	Hoxa9_MA0594.1	6	1	+	8.18560062555707	4.9481798769920085	ACCATAAAACA
chr17	58411917	58411918	chr17:58411918:T:C	rs12603174	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr17	58416012	58416013	chr17:58416013:A:T	rs7215531	A	T	A	Hoxa9_MA0594.1	3	1	+	6.766981631017401	-0.07575501159028653	GCCATGCATCA
chr17	58679415	58679416	chr17:58679416:C:T	rs544749410	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	58679426	58679427	chr17:58679427:C:A	rs141839411	C	A	C	Hoxa9_MA0594.1	2	1	+	7.438771319837264	6.317233348923561	GGCATCAATCT
chr17	58728961	58728962	chr17:58728962:G:A	rs561618066	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr17	58786545	58786546	chr17:58786546:C:A	rs760783624	C	A	C	Hoxa9_MA0594.1	0	1	-	7.801541603022757	4.833539837036138	GACATGAATCA
chr17	58786556	58786557	chr17:58786557:C:T	rs7212271	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	59159538	59159539	chr17:59159539:G:A	rs7217845	G	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	59204731	59204732	chr17:59204732:G:A	rs6503904	G	A	-	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	59219799	59219800	chr17:59219800:G:A	rs9903295	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	59220306	59220307	chr17:59220307:T:G	chr17:59220307:T:G	T	G	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	59360803	59360804	chr17:59360804:A:G	rs1037364	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	59783321	59783322	chr17:59783322:G:A	rs981508	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	59793418	59793419	chr17:59793419:G:C	rs8074774	G	C	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	59842354	59842355	chr17:59842355:C:G	rs9893566	C	G	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	59886175	59886176	chr17:59886176:A:G	rs1292053	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr17	60091344	60091345	chr17:60091345:T:A	rs80274708	T	A	t	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr17	60391786	60391787	chr17:60391787:C:A	rs146483883	C	A	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr17	60571094	60571095	chr17:60571095:A:G	rs7218061	A	G	A	Hoxa9_MA0594.1	3	1	+	7.974317910913794	4.992521483504936	CATATAAATCA
chr17	60677862	60677863	chr17:60677863:T:G	rs750220253	T	G	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	60941129	60941130	chr17:60941130:A:G	rs76969170	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	60941130	60941131	chr17:60941131:A:T	rs116507301	A	T	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	61150288	61150289	chr17:61150289:T:A	rs7208945	T	A	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	61303226	61303227	chr17:61303227:A:G	rs3853830	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	61325604	61325605	chr17:61325605:G:T	rs756876756	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	61392794	61392795	chr17:61392795:C:T	rs144223186	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr17	61445060	61445061	chr17:61445061:A:G	rs1049101626	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr17	61451182	61451183	chr17:61451183:T:C	rs9907751	T	C	T	Hoxa9_MA0594.1	7	1	-	7.58471315392892	0.6817794802260009	CTCATCAATAA
chr17	61486493	61486494	chr17:61486494:A:C	chr17:61486494:A:C	A	C	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr17	61662760	61662761	chr17:61662761:A:C	rs7219555	A	C	A	Hoxa9_MA0594.1	6	1	+	7.712022685634453	4.474601937069391	ACTATCAATCT
chr17	61690139	61690140	chr17:61690140:G:A	rs6504063	G	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr17	61840242	61840243	chr17:61840243:A:G	rs57902513	A	G	a	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	61947029	61947030	chr17:61947030:C:G	rs8080298	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	62170365	62170366	chr17:62170366:A:G	rs12451501	A	G	G	Hoxa9_MA0594.1	2	1	+	8.002415769692018	2.60005375285738	CCAATTAATCA
chr17	62180019	62180020	chr17:62180020:G:A	rs117068926	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr17	62186978	62186979	chr17:62186979:C:T	rs115459570	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr17	62457715	62457716	chr17:62457716:G:A	rs733667	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	62668587	62668588	chr17:62668588:A:G	chr17:62668588:A:G	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	63040149	63040150	chr17:63040150:G:T	rs16946732	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr17	63078809	63078810	chr17:63078810:A:G	rs148264971	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr17	63275344	63275345	chr17:63275345:A:T	chr17:63275345:A:T	A	T	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr17	63275373	63275374	chr17:63275374:T:C	chr17:63275374:T:C	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr17	64088004	64088005	chr17:64088005:T:C	rs78975532	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	64122424	64122425	chr17:64122425:A:G	rs190391016	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	64240796	64240797	chr17:64240797:T:C	rs11869645	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr17	64240811	64240812	chr17:64240812:T:G	chr17:64240812:T:G	T	G	T	Hoxa9_MA0594.1	3	1	-	7.813535555584478	3.8853211311052367	GCCATACATCT
chr17	64503830	64503831	chr17:64503831:G:T	chr17:64503831:G:T	G	T	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	64607976	64607977	chr17:64607977:C:T	rs140032999	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr17	64624181	64624182	chr17:64624182:C:G	rs8064907	C	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	64734039	64734040	chr17:64734040:C:A	rs150860954	C	A	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr17	64775785	64775786	chr17:64775786:A:T	rs112958654	A	T	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	64962693	64962694	chr17:64962694:C:T	rs114579658	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	65070621	65070622	chr17:65070622:A:G	rs8082032	A	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr17	65137735	65137736	chr17:65137736:T:A	rs115847645	T	A	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	65852755	65852756	chr17:65852756:T:C	rs11656577	T	C	T	Hoxa9_MA0594.1	6	1	-	8.642730421240351	1.825129635484694	GAAATCAATCA
chr17	65886566	65886567	chr17:65886567:G:C	rs75006747	G	C	C	Hoxa9_MA0594.1	1	1	-	7.877589431813438	4.818821470166475	TCAATCAATCA
chr17	66256227	66256228	chr17:66256228:G:A	rs1383607951	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr17	66283212	66283213	chr17:66283213:A:C	rs11653415	A	C	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr17	66309042	66309043	chr17:66309043:G:A	rs9901804	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	66314456	66314457	chr17:66314457:T:A	rs35512343	T	A	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	66317760	66317761	chr17:66317761:A:G	rs28507389	A	G	G	Hoxa9_MA0594.1	4	1	-	7.982910014867283	1.0741552355520623	AACATAAATCT
chr17	66354722	66354723	chr17:66354723:C:T	rs114104137	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	66354723	66354724	chr17:66354724:G:A	rs73341556	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr17	66364665	66364666	chr17:66364666:G:A	rs112978909	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	66571043	66571044	chr17:66571044:T:C	rs7219499	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr17	66581113	66581114	chr17:66581114:T:C	rs73342564	T	C	T	Hoxa9_MA0594.1	3	1	-	7.736199956390875	4.754403528982016	CTCATAAAACA
chr17	66728495	66728496	chr17:66728496:G:C	rs7215972	G	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	66847947	66847948	chr17:66847948:C:T	rs1990339	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	66847957	66847958	chr17:66847958:G:C	rs74947619	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr17	66860426	66860427	chr17:66860427:G:A	rs3848414	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr17	66942702	66942703	chr17:66942703:G:A	rs758654	G	A	g	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr17	66942737	66942738	chr17:66942738:C:T	rs2885716	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	66945753	66945754	chr17:66945754:C:T	rs117290011	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	67039098	67039099	chr17:67039099:T:C	rs4790993	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr17	67076443	67076444	chr17:67076444:C:T	rs9892296	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	67522019	67522020	chr17:67522020:C:T	rs191385557	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	67575423	67575424	chr17:67575424:A:G	rs528014932	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	67582849	67582850	chr17:67582850:C:G	rs144867998	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr17	67611905	67611906	chr17:67611906:A:G	rs11079698	A	G	A	Hoxa9_MA0594.1	1	1	-	11.628996430268678	12.520546191379072	GTCATAAATCA
chr17	67672753	67672754	chr17:67672754:A:G	rs149183625	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	67818265	67818266	chr17:67818266:C:G	rs3936134	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	68167544	68167545	chr17:68167545:A:G	rs78802760	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr17	68183673	68183674	chr17:68183674:C:G	rs11077784	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr17	68201084	68201085	chr17:68201085:C:T	rs145055562	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	68351757	68351758	chr17:68351758:A:G	rs76945033	A	G	A	Hoxa9_MA0594.1	3	1	+	8.774295001881132	5.7924985744722735	GCAATAAATTA
chr17	68393402	68393403	chr17:68393403:C:T	rs8064339	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr17	68399492	68399493	chr17:68399493:A:G	rs74358384	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr17	68431377	68431378	chr17:68431378:C:T	rs12453629	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr17	68582308	68582309	chr17:68582309:C:T	chr17:68582309:C:T	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	68619857	68619858	chr17:68619858:T:C	rs17702546	T	C	T	Hoxa9_MA0594.1	3	1	-	8.260841894848062	5.279045467439203	ACCATCTATCA
chr17	68677096	68677097	chr17:68677097:T:G	rs2278445	T	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr17	68697760	68697761	chr17:68697761:G:A	rs187864890	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	68748477	68748478	chr17:68748478:G:A	rs145855653	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr17	68803388	68803389	chr17:68803389:A:G	rs9899443	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr17	68808011	68808012	chr17:68808012:A:G	rs2053584	A	G	G	Hoxa9_MA0594.1	8	1	-	6.445205964430637	-0.428082085669252	GGCATCAATCC
chr17	68808031	68808032	chr17:68808032:G:A	rs2053585	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	68840378	68840379	chr17:68840379:C:T	rs1550646	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr17	69032118	69032119	chr17:69032119:T:C	rs2302291	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	69474314	69474315	chr17:69474315:G:A	rs114285922	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	69528243	69528244	chr17:69528244:T:C	rs2716202	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	69528275	69528276	chr17:69528276:G:A	rs141741512	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr17	69762576	69762577	chr17:69762577:C:T	rs77010773	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	69877003	69877004	chr17:69877004:A:C	rs12103827	A	C	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	69968280	69968281	chr17:69968281:T:C	rs76614992	T	C	T	Hoxa9_MA0594.1	5	1	-	7.431493751404856	4.915349939608246	CACATAAATCC
chr17	70091906	70091907	chr17:70091907:G:C	rs6501366	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	70182717	70182718	chr17:70182718:A:G	rs7211609	A	G	A	Hoxa9_MA0594.1	2	1	+	8.773111023127315	3.3707490062926775	CAAATAAATCA
chr17	70208363	70208364	chr17:70208364:G:A	rs115934860	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr17	70292465	70292466	chr17:70292466:G:A	rs77358052	G	A	.	Hoxa9_MA0594.1	29	0	+	0	0	.
chr17	70365952	70365953	chr17:70365953:T:C	rs3848453	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	70420855	70420856	chr17:70420856:G:A	rs11654179	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	70498850	70498851	chr17:70498851:G:T	rs17779747	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	70739345	70739346	chr17:70739346:C:T	rs117644133	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr17	70863848	70863849	chr17:70863849:T:C	rs148783324	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	70882612	70882613	chr17:70882613:A:G	rs10512554	A	G	G	Hoxa9_MA0594.1	7	1	+	8.74080400765128	1.837870333948359	ATCATCAATCT
chr17	70912848	70912849	chr17:70912849:T:C	rs56124959	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr17	70969931	70969932	chr17:70969932:G:A	rs2041056	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr17	71072423	71072424	chr17:71072424:C:T	rs11871999	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	71072707	71072708	chr17:71072708:A:G	rs7208880	A	G	G	Hoxa9_MA0594.1	4	1	-	10.185770791426988	3.2770160121117677	ACCATAAATCT
chr17	71145569	71145570	chr17:71145570:C:T	rs9907587	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr17	71410220	71410221	chr17:71410221:T:G	rs7226071	T	G	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	71516309	71516310	chr17:71516310:T:C	rs4793356	T	C	T	Hoxa9_MA0594.1	7	1	-	9.294221030316594	2.3912873566136725	ATCATAAATCT
chr17	71530567	71530568	chr17:71530568:T:A	rs76131519	T	A	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr17	71633528	71633529	chr17:71633529:G:T	chr17:71633529:G:T	G	T	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	71793194	71793195	chr17:71793195:A:G	rs144243349	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	71866960	71866961	chr17:71866961:T:C	rs12450309	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	71926972	71926973	chr17:71926973:C:T	rs59554899	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	72136653	72136654	chr17:72136654:C:T	rs78448117	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	72362772	72362773	chr17:72362773:T:C	rs116953893	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	72451543	72451544	chr17:72451544:A:G	rs17827102	A	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr17	72542989	72542990	chr17:72542990:C:T	rs857493	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr17	72617469	72617470	chr17:72617470:C:G	rs16977299	C	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	72623207	72623208	chr17:72623208:G:A	rs116956401	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr17	72661649	72661650	chr17:72661650:T:C	rs551782013	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr17	72666082	72666083	chr17:72666083:A:G	rs1057403263	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	72711934	72711935	chr17:72711935:G:A	rs2713960	G	A	A	Hoxa9_MA0594.1	9	1	-	7.529537515497607	4.904824296913368	TCCATCAATCT
chr17	72862009	72862010	chr17:72862010:T:C	rs76633301	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr17	72900725	72900726	chr17:72900726:T:C	rs8073036	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr17	72900735	72900736	chr17:72900736:T:C	rs72847965	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr17	73013912	73013913	chr17:73013913:G:A	rs1026210872	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	73089351	73089352	chr17:73089352:C:A	rs9898137	C	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	73107260	73107261	chr17:73107261:G:A	rs139948122	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr17	73230294	73230295	chr17:73230295:A:G	rs9900024	A	G	A	Hoxa9_MA0594.1	3	1	+	7.877589431813438	4.895793004404579	TCAATCAATCA
chr17	73241952	73241953	chr17:73241953:T:G	rs77289165	T	G	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	73303911	73303912	chr17:73303912:T:C	rs138064569	T	C	T	Hoxa9_MA0594.1	6	1	-	7.1129682170592226	0.2953674313035668	CCCATAACTCA
chr17	73452678	73452679	chr17:73452679:T:C	rs11867629	T	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr17	73493964	73493965	chr17:73493965:C:T	rs1872077	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	73520768	73520769	chr17:73520769:A:C	rs1531861	A	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr17	73586457	73586458	chr17:73586458:G:A	rs78725178	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	73739218	73739219	chr17:73739219:T:C	rs12602527	T	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr17	73772015	73772016	chr17:73772016:G:C	rs2619964	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	73901619	73901620	chr17:73901620:T:C	rs4789591	T	C	C	Hoxa9_MA0594.1	3	1	-	9.050786138279621	6.068989710870762	GCCATAAAACA
chr17	73940011	73940012	chr17:73940012:G:A	rs11659041	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	74164309	74164310	chr17:74164310:G:C	rs35639318	G	C	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	74195571	74195572	chr17:74195572:T:A	rs59284503	T	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr17	74197046	74197047	chr17:74197047:A:T	rs79807021	A	T	A	Hoxa9_MA0594.1	0	1	-	9.552544425392455	11.655360678656521	TCCATAAATCA
chr17	74523360	74523361	chr17:74523361:C:T	rs113185789	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr17	74550049	74550050	chr17:74550050:A:G	rs760736431	A	G	A	Hoxa9_MA0594.1	8	1	+	7.18278293372556	5.697647056886544	CTCATCAAACA
chr17	74605063	74605064	chr17:74605064:G:A	rs72847168	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	74635750	74635751	chr17:74635751:T:C	rs543818	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	74777988	74777989	chr17:74777989:T:C	rs12452204	T	C	T	Hoxa9_MA0594.1	6	1	-	7.065001658177677	0.24740087242202113	GCTGTCAATCA
chr17	74802258	74802259	chr17:74802259:G:A	rs56274570	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	74805566	74805567	chr17:74805567:G:C	rs10512601	G	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr17	74914054	74914055	chr17:74914055:G:C	rs113611373	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	75007099	75007100	chr17:75007100:C:T	rs902723	C	T	T	Hoxa9_MA0594.1	10	1	+	6.52217749866874	7.515742854075367	GCCGTCAATCC
chr17	75025147	75025148	chr17:75025148:C:G	rs7208833	C	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr17	75181600	75181601	chr17:75181601:T:A	rs10401035	T	A	T	Hoxa9_MA0594.1	10	1	+	9.064232820513286	10.53382270774282	ACAATAAATCT
chr17	75323725	75323726	chr17:75323726:C:T	rs55652331	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	75404840	75404841	chr17:75404841:A:G	rs780397627	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	75562235	75562236	chr17:75562236:T:C	rs1470941	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	75587912	75587913	chr17:75587913:G:A	rs112457233	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr17	75830038	75830039	chr17:75830039:C:T	rs35628234	C	T	C	Hoxa9_MA0594.1	0	1	+	7.18278293372556	4.637817588517292	CTCATCAAACA
chr17	75853700	75853701	chr17:75853701:A:G	rs188539935	A	G	A	Hoxa9_MA0594.1	7	1	+	9.256408009457576	2.353474335754657	CCCATATATCA
chr17	75855907	75855908	chr17:75855908:C:T	rs151051604	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	75855926	75855927	chr17:75855927:C:A	rs936394	C	A	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	76000463	76000464	chr17:76000464:G:A	rs62624498	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	76000477	76000478	chr17:76000478:A:G	rs115295379	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	76256857	76256858	chr17:76256858:C:G	rs8067923	C	G	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	76479962	76479963	chr17:76479963:G:C	rs3826287	G	C	G	Hoxa9_MA0594.1	9	1	-	9.461778229732111	2.6634472680312644	GGCATAAATCA
chr17	76506511	76506512	chr17:76506512:C:T	rs117635711	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	76789713	76789714	chr17:76789714:C:T	rs78017205	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	76872356	76872357	chr17:76872357:C:T	chr17:76872357:C:T	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr17	76892915	76892916	chr17:76892916:C:T	rs679148	C	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	76903532	76903533	chr17:76903533:A:G	rs642058	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	77028092	77028093	chr17:77028093:T:C	rs35635072	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	77088541	77088542	chr17:77088542:G:A	rs560654472	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr17	77164993	77164994	chr17:77164994:C:T	rs2411065	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	77208804	77208805	chr17:77208805:T:C	rs8078674	T	C	T	Hoxa9_MA0594.1	6	1	-	7.982910014867283	1.165309229111626	AACATAAATCT
chr17	77219020	77219021	chr17:77219021:G:T	rs7215278	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr17	77233627	77233628	chr17:77233628:A:G	rs12150634	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr17	77233660	77233661	chr17:77233661:G:C	rs12150257	G	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr17	77269960	77269961	chr17:77269961:G:A	rs4258649	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr17	77342406	77342407	chr17:77342407:A:C	rs2060550	A	C	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr17	77387818	77387819	chr17:77387819:A:C	rs1416490361	A	C	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr17	77387857	77387858	chr17:77387858:T:C	rs1105409	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	77387859	77387860	chr17:77387860:C:T	rs1105410	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	77454456	77454457	chr17:77454457:T:A	rs146153425	T	A	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr17	77472119	77472120	chr17:77472120:C:T	rs771672504	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	77475150	77475151	chr17:77475151:G:A	rs2898648	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	77475164	77475165	chr17:77475165:G:A	rs41282083	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr17	77542434	77542435	chr17:77542435:G:A	rs145120726	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	77612930	77612931	chr17:77612931:T:C	rs749456	T	C	C	Hoxa9_MA0594.1	4	1	+	8.397354331692144	1.4885995523769249	GATATAAATCA
chr17	77619424	77619425	chr17:77619425:G:A	rs7215702	G	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr17	77667694	77667695	chr17:77667695:A:G	rs67925174	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	77686019	77686020	chr17:77686020:T:C	rs55975688	T	C	-	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr17	77698495	77698496	chr17:77698496:C:T	rs76303501	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	77793621	77793622	chr17:77793622:C:T	rs74000917	C	T	C	Hoxa9_MA0594.1	9	1	+	9.546990161384072	6.922276942799832	GCCATTAATCA
chr17	77796645	77796646	chr17:77796646:A:G	rs7212112	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr17	77818495	77818496	chr17:77818496:C:G	rs1865987	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	77858510	77858511	chr17:77858511:T:C	rs62641985	T	C	C	Hoxa9_MA0594.1	10	1	+	7.2334010995627285	6.239835744156101	CCCATCTATCT
chr17	77963632	77963633	chr17:77963633:T:C	chr17:77963633:T:C	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr17	78276799	78276800	chr17:78276800:G:A	rs137968754	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr17	78375124	78375125	chr17:78375125:C:G	rs142568651	C	G	C	Hoxa9_MA0594.1	1	1	+	6.52217749866874	3.4634095370217777	GCCGTCAATCC
chr17	78380443	78380444	chr17:78380444:T:C	rs56205534	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr17	78390515	78390516	chr17:78390516:C:G	rs138529392	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	78409755	78409756	chr17:78409756:T:C	rs4969187	T	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	78510892	78510893	chr17:78510893:G:A	rs671972	G	A	.	Hoxa9_MA0594.1	27	0	+	0	0	.
chr17	78533358	78533359	chr17:78533359:G:T	rs139303063	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr17	78534191	78534192	chr17:78534192:G:A	rs9914981	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	78571827	78571828	chr17:78571828:G:A	rs4969149	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	78598255	78598256	chr17:78598256:G:T	rs4969153	G	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	78598957	78598958	chr17:78598958:G:A	rs11651198	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr17	78902521	78902522	chr17:78902522:A:G	rs113593090	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr17	78902525	78902526	chr17:78902526:C:T	rs113434673	C	T	C	Hoxa9_MA0594.1	2	1	+	7.2202263104641835	5.29989522733696	CTCATGAATCT
chr17	78905382	78905383	chr17:78905383:G:A	rs12600817	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr17	79188526	79188527	chr17:79188527:T:C	rs8072885	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr17	79189361	79189362	chr17:79189362:T:C	rs1380797	T	C	C	Hoxa9_MA0594.1	3	1	-	9.634354527964561	6.652558100555703	CCCATAAATCC
chr17	79277536	79277537	chr17:79277537:A:G	rs898533	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	79315072	79315073	chr17:79315073:C:T	rs78346204	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr17	79325796	79325797	chr17:79325797:C:T	rs74002917	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr17	79338957	79338958	chr17:79338958:T:C	rs8076595	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr17	79399928	79399929	chr17:79399929:C:T	rs77444374	C	T	C	Hoxa9_MA0594.1	2	1	+	6.559551194393908	4.639220111266686	CCCATCACTCA
chr17	79485971	79485972	chr17:79485972:T:C	rs4789900	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr17	79542434	79542435	chr17:79542435:A:G	rs7216806	A	G	G	Hoxa9_MA0594.1	10	1	+	8.45982798789041	1.8230550021376413	CCAATGAATCA
chr17	79559956	79559957	chr17:79559957:T:C	rs1413026203	T	C	t	Hoxa9_MA0594.1	23	0	-	0	0	.
chr17	79832499	79832500	chr17:79832500:C:T	chr17:79832500:C:T	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr17	79852942	79852943	chr17:79852943:T:C	rs8067501	T	C	t	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr17	79954217	79954218	chr17:79954218:C:G	rs7221608	C	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	80099316	80099317	chr17:80099317:T:C	rs55662397	T	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	80099340	80099341	chr17:80099341:G:A	rs56176300	G	A	G	Hoxa9_MA0594.1	8	1	+	7.1426138406622535	8.62774971750127	CCCATAAAGCA
chr17	80126355	80126356	chr17:80126356:T:A	rs4889825	T	A	t	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	80138077	80138078	chr17:80138078:T:C	rs2361710	T	C	C	Hoxa9_MA0594.1	3	1	-	10.317685414819367	7.335888987410509	GACATAAATCA
chr17	80169826	80169827	chr17:80169827:A:G	rs12451493	A	G	A	Hoxa9_MA0594.1	7	1	+	7.173729231511967	0.27079555780904707	ACCCTCAATCA
chr17	80262401	80262402	chr17:80262402:A:G	rs138105446	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	80284833	80284834	chr17:80284834:T:C	rs142657947	T	C	T	Hoxa9_MA0594.1	7	1	-	7.7868232361530945	0.8838895624501748	GGAATCAATCA
chr17	80307287	80307288	chr17:80307288:G:T	rs61087724	G	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr17	80453232	80453233	chr17:80453233:G:T	rs13341123	G	T	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	80496600	80496601	chr17:80496601:A:G	rs58366017	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr17	80586106	80586107	chr17:80586107:C:A	rs12944929	C	A	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr17	80586107	80586108	chr17:80586108:G:A	rs7215020	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr17	80740992	80740993	chr17:80740993:C:T	rs12947784	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr17	80815935	80815936	chr17:80815936:A:G	rs2589131	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr17	80863045	80863046	chr17:80863046:A:G	rs2063785	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr17	80894641	80894642	chr17:80894642:T:C	rs7503014	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	81310916	81310917	chr17:81310917:A:C	rs540234386	A	C	A	Hoxa9_MA0594.1	2	1	+	8.774295001881132	9.895832972794834	GCAATAAATTA
chr17	81310937	81310938	chr17:81310938:A:G	rs7208247	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	81343286	81343287	chr17:81343287:G:C	rs549932733	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	81343953	81343954	chr17:81343954:C:T	rs80147643	C	T	C	Hoxa9_MA0594.1	1	1	+	10.185770791426988	9.294221030316594	ACCATAAATCT
chr17	81490516	81490517	chr17:81490517:A:G	rs11150789	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr17	81655072	81655073	chr17:81655073:A:G	rs547692292	A	G	A	Hoxa9_MA0594.1	8	1	-	8.476262915039317	1.6029748649394273	CCCATCAATAA
chr17	81664293	81664294	chr17:81664294:G:A	rs62080203	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr17	81664296	81664297	chr17:81664297:G:C	rs56148948	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr17	81721001	81721002	chr17:81721002:G:A	rs571109199	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr17	81858023	81858024	chr17:81858024:C:T	rs3786150	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr17	81967296	81967297	chr17:81967297:T:C	rs117619098	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr17	82018705	82018706	chr17:82018706:G:A	rs72861729	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr17	82492916	82492917	chr17:82492917:C:T	rs112707291	C	T	c	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr17	82493334	82493335	chr17:82493335:A:G	rs376581351	A	G	A	Hoxa9_MA0594.1	7	1	+	7.015734899058914	0.11280122535599352	CGCATCAATCT
chr17	82545284	82545285	chr17:82545285:G:A	rs72861060	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr17	82603447	82603448	chr17:82603448:T:C	rs1051855	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr17	82603448	82603449	chr17:82603449:G:A	rs3794714	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr17	82794206	82794207	chr17:82794207:C:T	rs557399787	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr17	82794255	82794256	chr17:82794256:G:T	rs75596709	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr17	82873414	82873415	chr17:82873415:G:T	rs56775875	G	T	g	Hoxa9_MA0594.1	12	0	+	0	0	.
chr17	82885786	82885787	chr17:82885787:T:C	rs56405605	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr17	82962550	82962551	chr17:82962551:A:G	rs12946952	A	G	a	Hoxa9_MA0594.1	17	0	-	0	0	.
chr17	82962577	82962578	chr17:82962578:T:C	rs111409624	T	C	N	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr17	83001121	83001122	chr17:83001122:T:C	rs12601298	T	C	T	Hoxa9_MA0594.1	4	1	+	7.362794359686789	0.4540395803715689	GCTATACATCA
chr17	83200021	83200022	chr17:83200022:A:G	rs1008567128	A	G	a	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr18	104396	104397	chr18:104397:C:A	rs9304039	C	A	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	307361	307362	chr18:307362:C:T	rs72857556	C	T	c	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr18	378337	378338	chr18:378338:G:A	rs59461532	G	A	G	Hoxa9_MA0594.1	0	1	+	8.561166597372587	7.695981084650036	GTCATAAATAA
chr18	395015	395016	chr18:395016:G:C	rs1940441	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr18	475413	475414	chr18:475414:C:A	rs146545422	C	A	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	518840	518841	chr18:518841:C:T	rs66614174	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	700429	700430	chr18:700430:C:T	rs764133538	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	770394	770395	chr18:770395:G:A	rs7228015	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	1350965	1350966	chr18:1350966:C:A	rs1435484	C	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	1533689	1533690	chr18:1533690:C:T	rs4570951	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	1976682	1976683	chr18:1976683:C:G	rs6417008	C	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr18	2049841	2049842	chr18:2049842:T:C	rs8085878	T	C	t	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	2050682	2050683	chr18:2050683:C:T	rs9954048	C	T	c	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	2105247	2105248	chr18:2105248:G:A	rs12967693	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr18	2256903	2256904	chr18:2256904:T:C	rs500227	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr18	2495285	2495286	chr18:2495286:A:G	rs74976703	A	G	A	Hoxa9_MA0594.1	7	1	+	8.510815797847973	1.6078821241450525	ACAATCAATCT
chr18	2606828	2606829	chr18:2606829:T:G	rs4299227	T	G	G	Hoxa9_MA0594.1	3	1	-	9.064232820513286	5.1360183960340455	ACAATAAATCT
chr18	2642160	2642161	chr18:2642161:T:G	rs7237910	T	G	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr18	2912413	2912414	chr18:2912414:A:G	rs620635	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr18	2997626	2997627	chr18:2997627:T:C	rs75600066	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr18	3014601	3014602	chr18:3014602:A:C	rs35892045	A	C	A	Hoxa9_MA0594.1	9	1	-	8.581246790906087	4.407629047789479	CTCATAAATTA
chr18	3040383	3040384	chr18:3040384:A:G	rs28705323	A	G	a	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr18	3114208	3114209	chr18:3114209:C:T	rs11081008	C	T	c	Hoxa9_MA0594.1	0	1	-	9.283125442814011	8.41793993009146	GCCATACATCA
chr18	3172853	3172854	chr18:3172854:C:A	rs12953451	C	A	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr18	3198477	3198478	chr18:3198478:C:T	rs72861627	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr18	3281499	3281500	chr18:3281500:A:G	rs7407940	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr18	3315711	3315712	chr18:3315712:T:C	rs1662285	T	C	t	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr18	3319916	3319917	chr18:3319917:C:T	rs1662813	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr18	3587640	3587641	chr18:3587641:C:T	rs584885	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	3655392	3655393	chr18:3655393:A:G	rs1675240	A	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	4074674	4074675	chr18:4074675:C:T	rs4798162	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr18	4946051	4946052	chr18:4946052:T:G	rs12964658	T	G	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr18	5285676	5285677	chr18:5285677:G:A	rs56334557	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr18	5311822	5311823	chr18:5311823:A:C	rs73946229	A	C	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	5471765	5471766	chr18:5471766:C:T	rs9950450	C	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr18	5710346	5710347	chr18:5710347:C:G	rs72871861	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	5841664	5841665	chr18:5841665:C:T	rs55991837	C	T	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	5841696	5841697	chr18:5841697:T:A	rs8087368	T	A	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr18	6505597	6505598	chr18:6505598:G:A	rs11873891	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	6576981	6576982	chr18:6576982:A:G	rs8096241	A	G	G	Hoxa9_MA0594.1	7	1	+	7.838158659038301	0.9352249853353816	GTCATCCATCA
chr18	6638822	6638823	chr18:6638823:G:A	rs1941502	G	A	G	Hoxa9_MA0594.1	1	1	+	7.7868232361530945	8.642730421240351	GGAATCAATCA
chr18	6638825	6638826	chr18:6638826:T:A	rs79303377	T	A	T	Hoxa9_MA0594.1	4	1	+	7.7868232361530945	0.8780684568378745	GGAATCAATCA
chr18	6692146	6692147	chr18:6692147:C:T	rs34513266	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	6735467	6735468	chr18:6735468:C:T	rs12150787	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr18	6885522	6885523	chr18:6885523:A:G	rs16950747	A	G	A	Hoxa9_MA0594.1	7	1	+	10.210393894880813	3.3074602211778927	ATCATCAATCA
chr18	6913975	6913976	chr18:6913976:G:A	rs1431389	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	6922019	6922020	chr18:6922020:C:A	rs9952054	C	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr18	7261345	7261346	chr18:7261346:A:G	rs8087671	A	G	A	Hoxa9_MA0594.1	8	1	-	8.93585297782921	2.062564927729321	GCAATAAATCC
chr18	7389229	7389230	chr18:7389230:G:C	rs9946160	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr18	7482922	7482923	chr18:7482923:T:C	rs56032740	T	C	T	Hoxa9_MA0594.1	7	1	-	8.702990986792262	1.8000573130893422	CCCATCTATCA
chr18	7688827	7688828	chr18:7688828:C:T	rs6506525	C	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	7954027	7954028	chr18:7954028:G:T	rs36093720	G	T	T	Hoxa9_MA0594.1	2	1	-	7.992188342502578	6.870650371588876	GGCATAAATCT
chr18	8236113	8236114	chr18:8236114:G:A	rs6506562	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	8288855	8288856	chr18:8288856:G:T	rs28715557	G	T	T	Hoxa9_MA0594.1	0	1	-	7.615878323456167	7.173729231511967	CCCCTCAATCA
chr18	8288871	8288872	chr18:8288872:A:G	rs56918394	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	8374912	8374913	chr18:8374913:G:A	rs8089060	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr18	8426649	8426650	chr18:8426650:C:T	rs675417	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr18	8435290	8435291	chr18:8435291:T:C	rs608064	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr18	8656599	8656600	chr18:8656600:T:C	rs321651	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	8767316	8767317	chr18:8767317:A:G	rs189265748	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	8767328	8767329	chr18:8767329:G:T	rs72936071	G	T	G	Hoxa9_MA0594.1	9	1	-	9.552544425392455	6.4847145924963625	TCCATAAATCA
chr18	8816445	8816446	chr18:8816446:T:A	chr18:8816446:T:A	T	A	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr18	8869781	8869782	chr18:8869782:C:T	rs1481042	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr18	9094787	9094788	chr18:9094788:G:C	rs114388029	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr18	9101723	9101724	chr18:9101724:G:T	rs2377962	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	9102420	9102421	chr18:9102421:G:A	rs866355463	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	9103268	9103269	chr18:9103269:A:G	rs55672869	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr18	9107420	9107421	chr18:9107421:A:G	rs116998578	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	9321303	9321304	chr18:9321304:T:C	rs79387138	T	C	T	Hoxa9_MA0594.1	4	1	+	9.95404143668966	3.04528665737444	GTAATCAATCA
chr18	9482552	9482553	chr18:9482553:A:G	rs12457094	A	G	A	Hoxa9_MA0594.1	7	1	+	9.95404143668966	3.051107762986741	GTAATCAATCA
chr18	9626466	9626467	chr18:9626467:C:T	rs7227499	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr18	9733119	9733120	chr18:9733120:A:G	rs1318486	A	G	G	Hoxa9_MA0594.1	3	1	+	9.130625221022317	6.1488287936134585	GCTATAAATCT
chr18	9811023	9811024	chr18:9811024:G:T	rs2299842	G	T	g	Hoxa9_MA0594.1	23	0	-	0	0	.
chr18	10024473	10024474	chr18:10024474:G:A	rs28668944	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr18	10041475	10041476	chr18:10041476:G:A	chr18:10041476:G:A	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr18	10058693	10058694	chr18:10058694:T:A	rs75109035	T	A	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr18	10196190	10196191	chr18:10196191:C:T	rs62079916	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr18	10491443	10491444	chr18:10491444:A:G	rs500222	A	G	A	Hoxa9_MA0594.1	4	1	-	9.736370122260793	2.8276153429455726	CTCATAAATCT
chr18	10506815	10506816	chr18:10506816:A:G	rs669434	A	G	-	Hoxa9_MA0594.1	4	1	-	7.608170449234994	0.6994156699197753	GCAATCCATCA
chr18	10660239	10660240	chr18:10660240:T:C	rs78279340	T	C	T	Hoxa9_MA0594.1	3	1	-	9.452499902096816	6.470703474687958	AACATAAATCA
chr18	10661307	10661308	chr18:10661308:C:T	rs75905506	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr18	10740771	10740772	chr18:10740772:C:T	rs35786221	C	T	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr18	10839842	10839843	chr18:10839843:G:A	rs1485776	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr18	10843173	10843174	chr18:10843174:T:C	rs7232017	T	C	T	Hoxa9_MA0594.1	9	1	+	8.774295001881132	11.39900822046537	GCAATAAATTA
chr18	10938029	10938030	chr18:10938030:G:A	rs9945337	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr18	11096618	11096619	chr18:11096619:C:T	rs11080490	C	T	T	Hoxa9_MA0594.1	0	1	-	11.050956304149539	10.185770791426988	GCCATAAATCT
chr18	11339603	11339604	chr18:11339604:G:A	rs116418119	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr18	11857634	11857635	chr18:11857635:A:G	rs73409587	A	G	G	Hoxa9_MA0594.1	10	1	+	9.139216866859913	2.502443881107144	ACCATGAATCA
chr18	12253088	12253089	chr18:12253089:C:T	rs12458979	C	T	c	Hoxa9_MA0594.1	9	1	+	7.415122238259951	4.790409019675712	CTCATCCATCA
chr18	12318027	12318028	chr18:12318028:C:G	rs4796960	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr18	12318059	12318060	chr18:12318060:A:G	rs58136410	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	12318066	12318067	chr18:12318067:C:T	rs559836625	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	12456559	12456560	chr18:12456560:G:A	rs522631	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	12604771	12604772	chr18:12604772:C:T	rs73407543	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	13029575	13029576	chr18:13029576:A:G	rs16940054	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr18	13243809	13243810	chr18:13243810:T:C	rs1427404837	T	C	-	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	13246486	13246487	chr18:13246487:G:A	rs4797750	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr18	13247880	13247881	chr18:13247881:T:C	rs4797753	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr18	13252658	13252659	chr18:13252659:T:C	rs546584045	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr18	13428038	13428039	chr18:13428039:T:C	rs9959699	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	13430308	13430309	chr18:13430309:A:G	rs16940502	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	13500895	13500896	chr18:13500896:T:C	rs753376679	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr18	13563686	13563687	chr18:13563687:G:A	rs8088049	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr18	13565172	13565173	chr18:13565173:T:G	rs8097832	T	G	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	14415957	14415958	chr18:14415958:T:C	rs8089809	T	C	.	Hoxa9_MA0594.1	12	0	-	0	0	.
chr18	14415972	14415973	chr18:14415973:A:G	rs8088682	A	G	.	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr18	14827250	14827251	chr18:14827251:G:A	rs537587503	G	A	g	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	21314568	21314569	chr18:21314569:T:C	rs8099122	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr18	21346161	21346162	chr18:21346162:C:T	rs76570014	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	21613065	21613066	chr18:21613066:C:T	rs72884773	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	21942477	21942478	chr18:21942478:T:C	rs141554213	T	C	T	Hoxa9_MA0594.1	7	1	-	8.044303216718815	1.1413695430158934	GTAATAAATCC
chr18	22005711	22005712	chr18:22005712:C:T	rs899642	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	22084777	22084778	chr18:22084778:C:G	rs1017955283	C	G	C	Hoxa9_MA0594.1	0	1	+	9.634354527964561	10.057390948742912	CCCATAAATCC
chr18	22106659	22106660	chr18:22106660:G:A	rs76265129	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	22223257	22223258	chr18:22223258:C:T	rs11664999	C	T	C	Hoxa9_MA0594.1	8	1	-	7.565650261440604	9.050786138279621	GCCATAAAGCA
chr18	22472196	22472197	chr18:22472197:G:A	rs74482694	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	22567996	22567997	chr18:22567997:A:G	rs117723936	A	G	A	Hoxa9_MA0594.1	7	1	+	8.061415128681777	1.1584814549788565	CTAATCAATCT
chr18	22568031	22568032	chr18:22568032:T:C	rs137896446	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr18	22684042	22684043	chr18:22684043:T:A	rs556133574	T	A	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	22734577	22734578	chr18:22734578:C:T	rs299232	C	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr18	22774840	22774841	chr18:22774841:C:T	rs79970343	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr18	23568502	23568503	chr18:23568503:A:T	rs74552655	A	T	A	Hoxa9_MA0594.1	8	1	-	9.00428321168444	5.534523158584987	GTCATAAATTA
chr18	23775619	23775620	chr18:23775620:C:T	rs9947098	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr18	23964013	23964014	chr18:23964014:G:A	rs377326176	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	24069385	24069386	chr18:24069386:G:C	chr18:24069386:G:C	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	24191281	24191282	chr18:24191282:C:T	rs6508239	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	24268983	24268984	chr18:24268984:G:C	rs76888153	G	C	G	Hoxa9_MA0594.1	0	1	+	7.581196251050087	7.158159830271736	GCCATAAAACT
chr18	24444240	24444241	chr18:24444241:T:G	rs17203265	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr18	24503325	24503326	chr18:24503326:C:T	rs899323975	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	24530922	24530923	chr18:24530923:A:G	rs16940792	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	24574742	24574743	chr18:24574743:G:C	rs55747633	G	C	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	24812185	24812186	chr18:24812186:G:T	rs76525491	G	T	G	Hoxa9_MA0594.1	1	1	-	8.68180464866152	6.478943872101814	ACCATTAATCA
chr18	25243935	25243936	chr18:25243936:T:C	rs45548037	T	C	T	Hoxa9_MA0594.1	3	1	-	8.08407129645524	5.102274869046382	GCTATGAATCA
chr18	25308714	25308715	chr18:25308715:C:G	rs7237416	C	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr18	25605488	25605489	chr18:25605489:A:G	rs273740	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	26079052	26079053	chr18:26079053:G:T	rs7244772	G	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	26498195	26498196	chr18:26498196:G:A	rs17604918	G	A	g	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	26550303	26550304	chr18:26550304:G:T	chr18:26550304:G:T	G	T	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr18	26869055	26869056	chr18:26869056:C:T	rs11662318	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	26909937	26909938	chr18:26909938:G:A	rs34688904	G	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	26920651	26920652	chr18:26920652:T:C	rs232320	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	27040665	27040666	chr18:27040666:A:G	rs8084423	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr18	27061813	27061814	chr18:27061814:T:C	rs4352124	T	C	C	Hoxa9_MA0594.1	4	1	+	7.0122332387752895	0.1034784594600704	GCCATCAAGCA
chr18	27297756	27297757	chr18:27297757:G:A	rs1648796	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr18	27569620	27569621	chr18:27569621:T:G	rs8092333	T	G	T	Hoxa9_MA0594.1	6	1	-	9.929418333235837	6.6919975846707755	GCAATAAATCT
chr18	27569634	27569635	chr18:27569635:G:C	rs8087249	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	27569768	27569769	chr18:27569769:G:A	rs8087406	G	A	G	Hoxa9_MA0594.1	5	1	-	8.485324786288448	6.065185778958758	CGCATCAATCA
chr18	27700694	27700695	chr18:27700695:A:G	rs4600538	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	27704772	27704773	chr18:27704773:A:C	rs34474005	A	C	a	Hoxa9_MA0594.1	5	1	+	8.300655674909967	7.747238652244652	ATCATAAATCC
chr18	27871565	27871566	chr18:27871566:C:G	rs9807496	C	G	G	Hoxa9_MA0594.1	0	1	-	8.899299335817666	8.476262915039317	GCCATCAATAA
chr18	28049151	28049152	chr18:28049152:T:C	rs1867285	T	C	T	Hoxa9_MA0594.1	7	1	-	8.219694000462	1.3167603267590802	CAAATCAATCA
chr18	28412571	28412572	chr18:28412572:A:T	rs11083276	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	28584660	28584661	chr18:28584661:G:A	rs16944974	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr18	28689844	28689845	chr18:28689845:A:G	rs17687475	A	G	A	Hoxa9_MA0594.1	6	1	+	9.980405685077507	3.1628048993218494	ACAATCAATCA
chr18	28809342	28809343	chr18:28809343:A:G	rs12962306	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr18	28995018	28995019	chr18:28995019:T:G	rs4800901	T	G	G	Hoxa9_MA0594.1	8	1	+	9.08885592396711	4.133959994028642	ATAATCAATCA
chr18	29096300	29096301	chr18:29096301:A:G	rs142010094	A	G	A	Hoxa9_MA0594.1	2	1	+	7.608170449234994	2.2058084324003575	GCAATCCATCA
chr18	29190683	29190684	chr18:29190684:C:T	rs72896029	C	T	C	Hoxa9_MA0594.1	2	1	+	8.11177607157458	6.191444988447357	CCCATGAATCT
chr18	29502246	29502247	chr18:29502247:G:A	rs7240074	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr18	30088298	30088299	chr18:30088299:T:C	rs57470489	T	C	T	Hoxa9_MA0594.1	10	1	-	8.66099466428206	2.0242216785292895	TTCATAAATCA
chr18	30245475	30245476	chr18:30245476:T:C	rs4452027	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	30281467	30281468	chr18:30281468:T:G	rs16947789	T	G	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr18	31131555	31131556	chr18:31131556:C:T	rs1789072	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	31207058	31207059	chr18:31207059:G:A	rs180974102	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr18	31207065	31207066	chr18:31207066:G:A	rs113912808	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr18	31207074	31207075	chr18:31207075:G:A	rs1040989344	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr18	31494143	31494144	chr18:31494144:C:T	rs72938857	C	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr18	31556049	31556050	chr18:31556050:A:G	rs1667221	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr18	31589861	31589862	chr18:31589862:A:G	rs3764479	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	31682463	31682464	chr18:31682464:T:C	rs968325	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr18	32006273	32006274	chr18:32006274:C:G	rs12454708	C	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr18	32450558	32450559	chr18:32450559:T:C	rs10502600	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	32477386	32477387	chr18:32477387:A:G	rs72937403	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr18	32674502	32674503	chr18:32674503:G:A	rs59903048	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	32711745	32711746	chr18:32711746:C:G	rs9963370	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	32774233	32774234	chr18:32774234:C:G	rs1523576	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	32921691	32921692	chr18:32921692:A:G	rs116487942	A	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr18	33685446	33685447	chr18:33685447:G:T	rs7241287	G	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	33756855	33756856	chr18:33756856:A:T	rs9967587	A	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr18	33802521	33802522	chr18:33802522:A:G	rs7235698	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr18	34234852	34234853	chr18:34234853:G:A	rs71363437	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	34490937	34490938	chr18:34490938:T:C	rs1521789	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr18	34551336	34551337	chr18:34551337:G:A	rs16965449	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr18	34707545	34707546	chr18:34707546:C:G	rs151307377	C	G	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr18	34803268	34803269	chr18:34803269:C:T	rs9953658	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr18	34803296	34803297	chr18:34803297:T:C	rs9965887	T	C	T	Hoxa9_MA0594.1	2	1	-	9.064232820513286	3.661870803678649	ACAATAAATCT
chr18	35083763	35083764	chr18:35083764:C:T	rs482255	C	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	35179762	35179763	chr18:35179763:T:G	rs7229550	T	G	t	Hoxa9_MA0594.1	10	1	+	7.2334010995627285	2.066218001039493	CCCATCTATCT
chr18	35345117	35345118	chr18:35345118:C:T	chr18:35345118:C:T	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr18	35443784	35443785	chr18:35443785:T:C	rs3894913	T	C	T	Hoxa9_MA0594.1	3	1	-	9.634354527964561	6.652558100555703	CCCATAAATCC
chr18	35634456	35634457	chr18:35634457:C:T	rs7243359	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr18	35807940	35807941	chr18:35807941:T:C	rs1942241	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	35848087	35848088	chr18:35848088:A:C	rs62100746	A	C	a	Hoxa9_MA0594.1	28	0	-	0	0	.
chr18	35948302	35948303	chr18:35948303:C:T	rs78798716	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr18	36072539	36072540	chr18:36072540:T:C	rs10153342	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	36451470	36451471	chr18:36451471:G:A	rs1398956	G	A	g	Hoxa9_MA0594.1	27	0	+	0	0	.
chr18	36772543	36772544	chr18:36772544:T:G	rs62083203	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr18	37378546	37378547	chr18:37378547:G:C	rs4799921	G	C	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	37946704	37946705	chr18:37946705:C:G	rs62081358	C	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	37953961	37953962	chr18:37953962:G:A	rs570932371	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr18	37984524	37984525	chr18:37984525:A:G	rs62084364	A	G	A	Hoxa9_MA0594.1	7	1	+	7.8728260628999855	0.9698923891970659	GCCATCAATTT
chr18	38665679	38665680	chr18:38665680:A:G	rs72642403	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr18	38752523	38752524	chr18:38752524:A:G	rs11665581	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	38894268	38894269	chr18:38894269:G:A	rs6507286	G	A	.	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	39036752	39036753	chr18:39036753:T:A	rs925240	T	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr18	39038017	39038018	chr18:39038018:C:T	rs16971512	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	39414573	39414574	chr18:39414574:A:G	rs8098507	A	G	G	Hoxa9_MA0594.1	7	1	+	7.618418680842992	0.7154850071400722	GCTGTAAATCA
chr18	39513412	39513413	chr18:39513413:C:T	rs1788931	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr18	39693423	39693424	chr18:39693424:T:C	rs67375932	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr18	39728596	39728597	chr18:39728597:G:A	rs11082150	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	39742133	39742134	chr18:39742134:T:C	rs2726223	T	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr18	39942344	39942345	chr18:39942345:T:C	rs8091001	T	C	T	Hoxa9_MA0594.1	3	1	-	8.477230437406968	5.49543400999811	ACCATCAATTA
chr18	39992125	39992126	chr18:39992126:A:C	rs8083471	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	40108741	40108742	chr18:40108742:A:C	rs10468943	A	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	40245936	40245937	chr18:40245937:A:G	rs118115427	A	G	A	Hoxa9_MA0594.1	3	1	+	9.064232820513286	6.082436393104428	ACAATAAATCT
chr18	40360813	40360814	chr18:40360814:A:G	rs936325174	A	G	A	Hoxa9_MA0594.1	2	1	-	9.285628926363104	11.205960009490326	CTTATAAATCA
chr18	40547015	40547016	chr18:40547016:G:A	rs61435438	G	A	G	Hoxa9_MA0594.1	8	1	+	7.0122332387752895	8.497369115614307	GCCATCAAGCA
chr18	40670934	40670935	chr18:40670935:T:C	rs7236371	T	C	C	Hoxa9_MA0594.1	7	1	-	7.415122238259951	0.512188564557031	CTCATCCATCA
chr18	40878261	40878262	chr18:40878262:C:T	rs147715288	C	T	c	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	41004402	41004403	chr18:41004403:G:C	rs3850131	G	C	C	Hoxa9_MA0594.1	9	1	-	9.581365958804113	2.7830349971032655	CCCATGAATCA
chr18	41047675	41047676	chr18:41047676:C:T	rs1982444	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr18	41144637	41144638	chr18:41144638:C:T	rs8091668	C	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr18	41323542	41323543	chr18:41323543:C:A	rs4890712	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr18	41323578	41323579	chr18:41323579:G:A	rs1472374	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	41681727	41681728	chr18:41681728:G:C	rs11873827	G	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	41870974	41870975	chr18:41870975:A:G	rs35789476	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr18	41870982	41870983	chr18:41870983:G:A	rs187545720	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr18	41941219	41941220	chr18:41941220:G:A	rs118093774	G	A	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	42064282	42064283	chr18:42064283:G:T	rs559231	G	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr18	42166419	42166420	chr18:42166420:T:C	rs16975675	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr18	42166431	42166432	chr18:42166432:C:A	rs16975678	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr18	42444709	42444710	chr18:42444710:A:T	rs346222	A	T	A	Hoxa9_MA0594.1	4	1	-	9.182953099595478	2.274198320280259	CTCATCAATCT
chr18	42932298	42932299	chr18:42932299:C:T	rs6507505	C	T	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr18	43009879	43009880	chr18:43009880:G:A	rs114593909	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	43068758	43068759	chr18:43068759:C:T	rs73951802	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	43622283	43622284	chr18:43622284:G:A	rs16977608	G	A	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	43626779	43626780	chr18:43626780:A:G	rs16977611	A	G	A	Hoxa9_MA0594.1	7	1	+	9.08885592396711	2.18592225026419	ATAATCAATCA
chr18	43751162	43751163	chr18:43751163:A:C	rs4514760	A	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	43789439	43789440	chr18:43789440:C:T	rs1046629882	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	43805914	43805915	chr18:43805915:C:T	rs77188745	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr18	43875950	43875951	chr18:43875951:G:A	rs62103716	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr18	43957356	43957357	chr18:43957357:C:T	rs77149930	C	T	C	Hoxa9_MA0594.1	1	1	+	8.88286440866876	7.991314647558364	GCAATGAATCA
chr18	44118038	44118039	chr18:44118039:G:A	rs11082367	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr18	44461148	44461149	chr18:44461149:C:A	rs41473946	C	A	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr18	44533304	44533305	chr18:44533305:G:T	rs8093196	G	T	G	Hoxa9_MA0594.1	1	1	-	8.382435955163896	6.17957517860419	GCAATCAATCC
chr18	44590261	44590262	chr18:44590262:G:A	rs76640459	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	44741553	44741554	chr18:44741554:C:T	rs143030374	C	T	C	Hoxa9_MA0594.1	0	1	-	8.561166597372587	7.695981084650036	GTCATAAATAA
chr18	44793825	44793826	chr18:44793826:A:C	rs62090585	A	C	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	44859920	44859921	chr18:44859921:C:T	rs991014	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr18	44896898	44896899	chr18:44896899:A:G	rs675079	A	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr18	45120048	45120049	chr18:45120049:G:C	rs879456453	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	45155731	45155732	chr18:45155732:G:A	rs35220808	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr18	45358289	45358290	chr18:45358290:G:A	rs191461870	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	45385175	45385176	chr18:45385176:C:T	rs192325417	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	45728923	45728924	chr18:45728924:C:G	rs9967412	C	G	G	Hoxa9_MA0594.1	0	1	+	10.97597179968702	11.39900822046537	CCAATAAATCA
chr18	45755933	45755934	chr18:45755934:C:T	rs9966818	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr18	45755956	45755957	chr18:45755957:G:A	rs16978485	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr18	45806439	45806440	chr18:45806440:T:G	rs149134831	T	G	t	Hoxa9_MA0594.1	8	1	+	8.34024025881841	3.385344328879941	GGAATAAATCA
chr18	45827834	45827835	chr18:45827835:T:C	rs73953903	T	C	T	Hoxa9_MA0594.1	4	1	+	8.08407129645524	1.1753165171400206	GCTATGAATCA
chr18	45834039	45834040	chr18:45834040:A:G	chr18:45834040:A:G	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr18	45993382	45993383	chr18:45993383:C:T	rs73953950	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr18	45998436	45998437	chr18:45998437:T:C	rs201155092	T	C	T	Hoxa9_MA0594.1	8	1	+	7.738551051121958	0.8652630010220697	CCAATACATCA
chr18	45998437	45998438	chr18:45998438:C:T	rs79122924	C	T	C	Hoxa9_MA0594.1	9	1	+	7.738551051121958	5.11383783253772	CCAATACATCA
chr18	46350999	46351000	chr18:46351000:C:T	rs8098242	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr18	46351008	46351009	chr18:46351009:C:T	rs8098249	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr18	46573375	46573376	chr18:46573376:G:A	rs111331364	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr18	46939711	46939712	chr18:46939712:C:G	chr18:46939712:C:G	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	47249525	47249526	chr18:47249526:G:A	rs2668771	G	A	A	Hoxa9_MA0594.1	0	1	-	7.7140234448373395	5.169058099629071	CCTATAAATCC
chr18	47390632	47390633	chr18:47390633:A:G	rs34358806	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr18	47692311	47692312	chr18:47692312:G:C	rs9945213	G	C	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr18	47704692	47704693	chr18:47704693:G:A	rs7506215	G	A	G	Hoxa9_MA0594.1	2	1	-	9.341231971375704	7.42090088824848	CACATCAATCA
chr18	47717063	47717064	chr18:47717064:A:G	rs11661072	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	47937031	47937032	chr18:47937032:T:G	rs4940120	T	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr18	48143872	48143873	chr18:48143873:G:A	rs78577771	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr18	48217674	48217675	chr18:48217675:G:A	rs55795746	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr18	48223070	48223071	chr18:48223071:C:A	rs73955664	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	48519961	48519962	chr18:48519962:G:A	rs77782851	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr18	48668443	48668444	chr18:48668444:G:C	rs150544650	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr18	48828745	48828746	chr18:48828746:C:T	rs9960798	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr18	48889711	48889712	chr18:48889712:G:A	rs73433480	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr18	49008567	49008568	chr18:49008568:G:A	rs833514	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	49230619	49230620	chr18:49230620:A:G	rs75587244	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr18	49738026	49738027	chr18:49738027:G:A	chr18:49738027:G:A	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	49849266	49849267	chr18:49849267:C:G	rs115012343	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	49855406	49855407	chr18:49855407:T:C	rs115263839	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	49950419	49950420	chr18:49950420:A:G	rs12959341	A	G	A	Hoxa9_MA0594.1	6	1	+	8.74080400765128	1.923203221895622	ATCATCAATCT
chr18	50163150	50163151	chr18:50163151:T:A	chr18:50163151:T:A	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	50373026	50373027	chr18:50373027:C:T	rs9973009	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr18	51051221	51051222	chr18:51051222:T:C	rs76642607	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	51051246	51051247	chr18:51051247:G:C	rs544824712	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	51124113	51124114	chr18:51124114:G:A	rs4332832	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	51324629	51324630	chr18:51324630:C:T	rs753617	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	51722086	51722087	chr18:51722087:C:T	rs8096278	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr18	52273132	52273133	chr18:52273133:T:C	rs35375543	T	C	T	Hoxa9_MA0594.1	10	1	-	8.557906459322226	1.9211334735694559	GCAATATATCA
chr18	52349758	52349759	chr18:52349759:C:T	rs1443572	C	T	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr18	52499865	52499866	chr18:52499866:A:G	rs17828125	A	G	A	Hoxa9_MA0594.1	7	1	+	11.205960009490326	4.303026335787407	CTCATAAATCA
chr18	52559727	52559728	chr18:52559728:A:G	rs11082930	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr18	52569169	52569170	chr18:52569170:T:C	rs11665228	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr18	52679430	52679431	chr18:52679431:G:A	rs17755888	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	52717292	52717293	chr18:52717293:C:T	rs7234380	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr18	52779918	52779919	chr18:52779919:G:T	rs9947241	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr18	52815783	52815784	chr18:52815784:C:A	rs8082829	C	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr18	53415142	53415143	chr18:53415143:T:C	rs559559102	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr18	53423132	53423133	chr18:53423133:A:C	rs13381100	A	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr18	53727597	53727598	chr18:53727598:A:G	rs7245348	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	53727599	53727600	chr18:53727600:G:A	rs138207299	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	53757005	53757006	chr18:53757006:A:G	rs17444197	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr18	53886172	53886173	chr18:53886173:A:G	rs10853636	A	G	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr18	53886176	53886177	chr18:53886177:T:C	rs924284	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	53946822	53946823	chr18:53946823:A:T	rs4131468	A	T	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	54174020	54174021	chr18:54174021:T:G	rs8094493	T	G	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	54358894	54358895	chr18:54358895:G:T	rs116066037	G	T	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	54389136	54389137	chr18:54389137:T:C	rs8089154	T	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	54492488	54492489	chr18:54492489:T:C	rs79686933	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	54532948	54532949	chr18:54532949:A:T	rs1056806686	A	T	A	Hoxa9_MA0594.1	8	1	-	10.627919883371188	7.158159830271736	CCCATAAATCT
chr18	54790095	54790096	chr18:54790096:G:T	rs192666077	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr18	54790096	54790097	chr18:54790097:G:A	rs185591737	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr18	55023722	55023723	chr18:55023723:G:A	rs28550884	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	55097977	55097978	chr18:55097978:A:C	rs1039644204	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr18	55112129	55112130	chr18:55112130:T:C	rs28460597	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr18	55150198	55150199	chr18:55150199:G:C	rs113396381	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr18	55458203	55458204	chr18:55458204:G:A	rs2924321	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr18	55737462	55737463	chr18:55737463:A:G	rs813043	A	G	A	Hoxa9_MA0594.1	7	1	+	10.159406543039145	3.2564728693362235	GTCATAAATCT
chr18	55818213	55818214	chr18:55818214:T:C	rs12455831	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr18	55864652	55864653	chr18:55864653:T:G	rs7243690	T	G	T	Hoxa9_MA0594.1	6	1	-	8.08407129645524	4.846650547890179	GCTATGAATCA
chr18	56221790	56221791	chr18:56221791:A:C	rs75104423	A	C	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr18	56330964	56330965	chr18:56330965:G:A	rs11662862	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	56330970	56330971	chr18:56330971:T:G	chr18:56330971:T:G	T	G	T	Hoxa9_MA0594.1	1	1	+	9.00428321168444	6.837065011147873	GTCATAAATTA
chr18	56651390	56651391	chr18:56651391:A:G	rs1490265234	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr18	56651391	56651392	chr18:56651392:C:G	rs1197495054	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr18	56860243	56860244	chr18:56860244:A:G	rs17830024	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr18	57225024	57225025	chr18:57225025:A:T	rs149574361	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr18	57250000	57250001	chr18:57250001:G:C	rs7231097	G	C	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr18	57322947	57322948	chr18:57322948:A:G	rs146964211	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	57434683	57434684	chr18:57434684:G:A	rs3760615	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr18	57843345	57843346	chr18:57843346:T:C	rs56221937	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr18	58214685	58214686	chr18:58214686:G:A	rs487990	G	A	A	Hoxa9_MA0594.1	9	1	-	8.004489436656911	5.379776218072672	GCAATCTATCA
chr18	58214686	58214687	chr18:58214687:A:C	rs487988	A	C	C	Hoxa9_MA0594.1	8	1	-	8.004489436656911	3.049593506718442	GCAATCTATCA
chr18	58370616	58370617	chr18:58370617:A:G	rs2075405	A	G	a	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr18	58370655	58370656	chr18:58370656:C:G	rs9955628	C	G	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	58493035	58493036	chr18:58493036:G:A	rs11661670	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr18	58538828	58538829	chr18:58538829:G:T	rs35311276	G	T	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	58580334	58580335	chr18:58580335:A:G	rs9956630	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr18	58580367	58580368	chr18:58580368:C:A	rs9944810	C	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr18	58655401	58655402	chr18:58655402:A:G	rs8097949	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr18	58698924	58698925	chr18:58698925:C:G	rs62094041	C	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	58723916	58723917	chr18:58723917:C:A	rs750793492	C	A	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	58789432	58789433	chr18:58789433:T:A	chr18:58789433:T:A	T	A	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr18	58789445	58789446	chr18:58789446:C:T	chr18:58789446:C:T	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr18	58850567	58850568	chr18:58850568:G:A	rs7239959	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	58865107	58865108	chr18:58865108:C:T	rs75659069	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr18	58992947	58992948	chr18:58992948:C:G	rs35932027	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr18	59080489	59080490	chr18:59080490:T:C	rs11874612	T	C	C	Hoxa9_MA0594.1	6	1	-	9.112852618472068	2.295251832716411	GTCATGAATCA
chr18	59484417	59484418	chr18:59484418:G:A	rs62092882	G	A	G	Hoxa9_MA0594.1	2	1	-	8.497369115614307	6.577038032487084	GCCATCAAACA
chr18	59484805	59484806	chr18:59484806:T:C	rs12955474	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr18	59514856	59514857	chr18:59514857:C:T	rs145263437	C	T	C	Hoxa9_MA0594.1	5	1	+	8.007749574707272	5.587610567377584	GTCATCAATAA
chr18	59566144	59566145	chr18:59566145:A:G	rs150349535	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr18	59577427	59577428	chr18:59577428:G:T	rs73961262	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr18	59616347	59616348	chr18:59616348:C:A	rs11663187	C	A	c	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	59714981	59714982	chr18:59714982:T:C	rs7227933	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr18	59742431	59742432	chr18:59742432:G:A	rs35014180	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr18	59810467	59810468	chr18:59810468:G:A	rs72984949	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	59823398	59823399	chr18:59823399:G:A	rs76378425	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	59823403	59823404	chr18:59823404:T:C	rs73961420	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	59953738	59953739	chr18:59953739:C:T	rs150398201	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr18	59953779	59953780	chr18:59953780:G:A	rs28461831	G	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr18	60047758	60047759	chr18:60047759:T:C	rs8083375	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr18	60053104	60053105	chr18:60053105:A:G	rs1573399	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr18	60178245	60178246	chr18:60178246:T:C	rs502921	T	C	-	Hoxa9_MA0594.1	3	1	-	9.376001310570523	6.394204883161664	GCAATCAATCT
chr18	60387871	60387872	chr18:60387872:T:G	rs7228347	T	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr18	60793903	60793904	chr18:60793904:A:G	rs111743617	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	60930300	60930301	chr18:60930301:A:C	rs74533821	A	C	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	61034810	61034811	chr18:61034811:G:A	rs1391344	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	61262131	61262132	chr18:61262132:G:A	rs58333761	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr18	61348391	61348392	chr18:61348392:T:C	rs10513876	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr18	61465050	61465051	chr18:61465051:A:G	rs17810639	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	61571037	61571038	chr18:61571038:G:A	rs76900963	G	A	G	Hoxa9_MA0594.1	0	1	-	9.02967993770463	6.4847145924963625	CCCATAAATAA
chr18	61595692	61595693	chr18:61595693:T:C	rs896650	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr18	61595757	61595758	chr18:61595758:G:A	rs8088329	G	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	61606343	61606344	chr18:61606344:C:T	rs201158710	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr18	61606359	61606360	chr18:61606360:A:G	rs79090108	A	G	A	Hoxa9_MA0594.1	1	1	-	8.742804766854166	9.634354527964561	CTCATAAATCC
chr18	61612980	61612981	chr18:61612981:C:G	rs9949372	C	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	61720731	61720732	chr18:61720732:T:A	rs7238130	T	A	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr18	61732858	61732859	chr18:61732859:C:T	rs7241237	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr18	61732895	61732896	chr18:61732896:T:C	rs55829051	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	61797898	61797899	chr18:61797899:T:C	rs117181736	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	61818704	61818705	chr18:61818705:G:C	rs79991965	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr18	62080784	62080785	chr18:62080785:G:A	rs13313626	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	62328951	62328952	chr18:62328952:G:A	rs76382273	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr18	62438155	62438156	chr18:62438156:A:G	rs7241925	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr18	62458129	62458130	chr18:62458130:T:C	rs677478	T	C	C	Hoxa9_MA0594.1	4	1	+	7.173729231511967	0.26497445219674676	ACCCTCAATCA
chr18	62531258	62531259	chr18:62531259:A:G	rs11152348	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr18	62771849	62771850	chr18:62771850:A:T	rs12458959	A	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr18	63068133	63068134	chr18:63068134:G:A	rs7239858	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr18	63112346	63112347	chr18:63112347:T:G	rs114609489	T	G	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr18	63112347	63112348	chr18:63112348:G:A	rs76572877	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	63313809	63313810	chr18:63313810:G:T	rs2051424	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	63319315	63319316	chr18:63319316:C:G	rs1473418	C	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr18	63451756	63451757	chr18:63451757:T:C	rs73472684	T	C	C	Hoxa9_MA0594.1	7	1	-	7.727146254177281	0.8242125804743616	ACCCTAAATCA
chr18	63497368	63497369	chr18:63497369:T:C	rs6567365	T	C	T	Hoxa9_MA0594.1	3	1	-	7.632183602891756	4.650387175482897	ACCATCAAACA
chr18	63511229	63511230	chr18:63511230:T:C	rs12968378	T	C	C	Hoxa9_MA0594.1	2	1	-	11.39900822046537	5.996646203630733	GCAATAAATCA
chr18	63511542	63511543	chr18:63511543:T:C	rs151182127	T	C	T	Hoxa9_MA0594.1	7	1	-	8.169295346121482	1.266361672418562	CCCCTAAATCA
chr18	63511543	63511544	chr18:63511544:T:G	rs925264	T	G	T	Hoxa9_MA0594.1	6	1	-	8.169295346121482	4.93187459755642	CCCCTAAATCA
chr18	63530559	63530560	chr18:63530560:A:G	rs10503081	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr18	63889658	63889659	chr18:63889659:A:T	rs28619869	A	T	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr18	63970064	63970065	chr18:63970065:C:T	rs151046793	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr18	64186834	64186835	chr18:64186835:T:G	rs62100380	T	G	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr18	64219367	64219368	chr18:64219368:G:C	rs77389193	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr18	64697188	64697189	chr18:64697189:T:A	rs80079883	T	A	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr18	64855073	64855074	chr18:64855074:A:G	rs1787923	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr18	64887585	64887586	chr18:64887586:G:T	rs9966456	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	65786519	65786520	chr18:65786520:A:T	rs6566175	A	T	T	Hoxa9_MA0594.1	10	1	+	11.655360678656521	10.185770791426988	ACCATAAATCA
chr18	66129427	66129428	chr18:66129428:A:T	rs62090385	A	T	A	Hoxa9_MA0594.1	5	1	+	8.224163582081468	5.250607552086466	CTCGTAAATCA
chr18	66129444	66129445	chr18:66129445:T:C	rs7239107	T	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr18	66999049	66999050	chr18:66999050:C:T	rs117574588	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr18	67151737	67151738	chr18:67151738:A:G	rs145154566	A	G	A	Hoxa9_MA0594.1	5	1	+	7.618418680842992	5.102274869046382	GCTGTAAATCA
chr18	67217780	67217781	chr18:67217781:C:G	rs1474777379	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr18	67217788	67217789	chr18:67217789:A:C	rs141010906	A	C	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	67651225	67651226	chr18:67651226:C:G	rs555639439	C	G	C	Hoxa9_MA0594.1	9	1	+	10.97597179968702	4.177640837986173	CCAATAAATCA
chr18	67651245	67651246	chr18:67651246:G:C	rs2440514	G	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	67756057	67756058	chr18:67756058:T:G	rs62093787	T	G	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr18	67893931	67893932	chr18:67893932:G:A	chr18:67893932:G:A	G	A	G	Hoxa9_MA0594.1	0	1	-	10.074502860705875	7.529537515497607	CCCATCAATCT
chr18	68141608	68141609	chr18:68141609:C:T	rs11151425	C	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	68182140	68182141	chr18:68182141:C:T	rs12957718	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr18	68185785	68185786	chr18:68185786:T:G	rs9958506	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr18	68403015	68403016	chr18:68403016:G:A	rs79052395	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	68714154	68714155	chr18:68714155:T:A	rs79590021	T	A	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr18	68819367	68819368	chr18:68819368:G:C	rs977408	G	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr18	69316925	69316926	chr18:69316926:G:C	rs8092830	G	C	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr18	69628704	69628705	chr18:69628705:C:A	rs114661663	C	A	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	69878261	69878262	chr18:69878262:G:A	rs4094864	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr18	70005131	70005132	chr18:70005132:A:G	rs74880685	A	G	A	Hoxa9_MA0594.1	3	1	+	8.232403979495325	5.250607552086466	CTCATTAATCA
chr18	70205653	70205654	chr18:70205654:A:C	rs747799533	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr18	70205676	70205677	chr18:70205677:A:C	rs77804861	A	C	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr18	70623142	70623143	chr18:70623143:G:A	rs17082921	G	A	G	Hoxa9_MA0594.1	1	1	-	9.050786138279621	8.159236377169226	GCCATAAAACA
chr18	70627718	70627719	chr18:70627719:G:C	rs4891870	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr18	70659013	70659014	chr18:70659014:T:C	rs1510040	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr18	70967750	70967751	chr18:70967751:A:G	rs7232353	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	71115428	71115429	chr18:71115429:G:T	rs17181300	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr18	71221265	71221266	chr18:71221266:T:C	rs72954904	T	C	T	Hoxa9_MA0594.1	3	1	-	9.037868572125442	6.056072144716582	GTAATAAATCT
chr18	71443327	71443328	chr18:71443328:C:T	rs17084437	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr18	71443346	71443347	chr18:71443347:G:T	rs6566535	G	T	g	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr18	71597098	71597099	chr18:71597099:T:C	rs8094778	T	C	C	Hoxa9_MA0594.1	10	1	-	10.422554777021706	3.7857817912689367	CCAATCAATCA
chr18	72420102	72420103	chr18:72420103:C:A	rs12961070	C	A	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr18	72602585	72602586	chr18:72602586:G:A	rs76824276	G	A	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr18	73287505	73287506	chr18:73287506:T:C	rs885093	T	C	T	Hoxa9_MA0594.1	2	1	+	10.1771786874735	12.097509770600722	CCTATAAATCA
chr18	73340722	73340723	chr18:73340723:C:A	rs4891505	C	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr18	73646829	73646830	chr18:73646830:C:T	rs7240456	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr18	73680191	73680192	chr18:73680192:G:A	rs9953978	G	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr18	73680195	73680196	chr18:73680196:G:T	rs111368204	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr18	73836177	73836178	chr18:73836178:T:C	rs145107772	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	74412237	74412238	chr18:74412238:T:G	rs568624527	T	G	T	Hoxa9_MA0594.1	10	1	-	11.075579407603364	8.612424164967203	GTCATCAATCA
chr18	74479321	74479322	chr18:74479322:A:T	rs890339	A	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr18	74524129	74524130	chr18:74524130:G:A	rs9807476	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr18	74524309	74524310	chr18:74524310:C:G	rs190901947	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr18	74574456	74574457	chr18:74574457:T:C	rs12456406	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr18	74796989	74796990	chr18:74796990:A:G	chr18:74796990:A:G	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	74899622	74899623	chr18:74899623:G:A	rs2006699	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr18	75142551	75142552	chr18:75142552:A:G	rs73974513	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr18	75176370	75176371	chr18:75176371:G:A	rs4641839	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr18	75231788	75231789	chr18:75231789:C:G	rs36035498	C	G	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr18	75304548	75304549	chr18:75304549:G:C	rs1946907	G	C	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr18	75358691	75358692	chr18:75358692:A:G	rs111317146	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr18	75358717	75358718	chr18:75358718:A:T	rs961756	A	T	A	Hoxa9_MA0594.1	1	1	-	9.112852618472068	7.801541603022757	GTCATGAATCA
chr18	75364508	75364509	chr18:75364509:C:A	rs4891267	C	A	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	75393853	75393854	chr18:75393854:G:A	rs147786068	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr18	75407943	75407944	chr18:75407944:T:C	rs112881783	T	C	T	Hoxa9_MA0594.1	4	1	+	8.45982798789041	1.5510732085751902	CCAATGAATCA
chr18	75418654	75418655	chr18:75418655:C:T	rs1307011940	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr18	75500088	75500089	chr18:75500089:G:A	rs67152229	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr18	75582169	75582170	chr18:75582170:T:A	rs66526964	T	A	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	75639090	75639091	chr18:75639091:A:G	rs79610127	A	G	A	Hoxa9_MA0594.1	10	1	-	9.60598952037383	8.612424164967203	GTCATCAATCT
chr18	75841465	75841466	chr18:75841466:G:A	rs2085771	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr18	75923491	75923492	chr18:75923492:A:C	rs17058548	A	C	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr18	76153838	76153839	chr18:76153839:A:C	rs1030566	A	C	A	Hoxa9_MA0594.1	6	1	+	8.34024025881841	5.102819510253347	GGAATAAATCA
chr18	76153858	76153859	chr18:76153859:G:A	rs35449971	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	76263475	76263476	chr18:76263476:G:A	rs80011937	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr18	76274962	76274963	chr18:76274963:G:A	rs78211658	G	A	g	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr18	76322051	76322052	chr18:76322052:T:C	rs610870	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr18	76466182	76466183	chr18:76466183:T:G	rs17355696	T	G	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr18	76796777	76796778	chr18:76796778:C:A	rs8084997	C	A	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	76885175	76885176	chr18:76885176:T:C	rs74822615	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr18	76943961	76943962	chr18:76943962:A:C	rs79861647	A	C	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr18	76998102	76998103	chr18:76998103:A:G	rs4890875	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	76998111	76998112	chr18:76998112:A:G	rs9959483	A	G	A	Hoxa9_MA0594.1	3	1	+	7.260118532919163	4.278322105510306	GCCATCCATCT
chr18	77037927	77037928	chr18:77037928:C:T	rs76843128	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr18	77239365	77239366	chr18:77239366:C:G	rs2850917	C	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr18	77492176	77492177	chr18:77492177:G:A	rs9945302	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr18	77587720	77587721	chr18:77587721:C:A	rs13313608	C	A	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr18	77607326	77607327	chr18:77607327:G:C	rs165117	G	C	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr18	77622216	77622217	chr18:77622217:C:A	rs9951146	C	A	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	77646973	77646974	chr18:77646974:A:G	rs8093779	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr18	77646977	77646978	chr18:77646978:G:C	rs8092196	G	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr18	77796665	77796666	chr18:77796666:A:T	rs8085841	A	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr18	78072264	78072265	chr18:78072265:G:A	rs76209281	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr18	78146792	78146793	chr18:78146793:T:C	rs7244362	T	C	t	Hoxa9_MA0594.1	22	0	-	0	0	.
chr18	78399928	78399929	chr18:78399929:C:T	rs377314734	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr18	78424429	78424430	chr18:78424430:A:G	rs35885381	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr18	78580353	78580354	chr18:78580354:T:C	rs893489	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr18	78601856	78601857	chr18:78601857:C:T	rs8094940	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr18	78730031	78730032	chr18:78730032:T:C	rs144884910	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr18	78976379	78976380	chr18:78976380:C:T	rs610806	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr18	79047184	79047185	chr18:79047185:C:T	rs7239280	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr18	79186128	79186129	chr18:79186129:C:T	rs6506737	C	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr18	79407766	79407767	chr18:79407767:A:C	rs7235416	A	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr18	79516963	79516964	chr18:79516964:A:G	rs177820	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr18	79559900	79559901	chr18:79559901:T:C	rs58819212	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr18	79795367	79795368	chr18:79795368:A:G	rs12958594	A	G	-	Hoxa9_MA0594.1	15	0	-	0	0	.
chr18	79868683	79868684	chr18:79868684:A:G	rs4799095	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr18	79965698	79965699	chr18:79965699:A:G	rs1430597	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr18	80171164	80171165	chr18:80171165:C:T	rs7242254	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr18	80241088	80241089	chr18:80241089:A:G	rs67693980	A	G	A	Hoxa9_MA0594.1	3	1	+	8.62774971750127	5.645953290092412	CCCATAAAACA
chr19	105020	105021	chr19:105021:G:C	rs7260412	G	C	g	Hoxa9_MA0594.1	0	1	+	9.00428321168444	8.581246790906087	GTCATAAATTA
chr19	295983	295984	chr19:295984:T:C	rs150777259	T	C	T	Hoxa9_MA0594.1	9	1	-	9.45271635848298	5.722215229678225	GCCATAAATAA
chr19	382072	382073	chr19:382073:C:T	rs554575603	C	T	-	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	382081	382082	chr19:382082:T:C	rs865972016	T	C	-	Hoxa9_MA0594.1	7	1	-	10.652542986825011	3.7496093131220922	CTCATCAATCA
chr19	406173	406174	chr19:406174:T:A	rs112599136	T	A	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	415407	415408	chr19:415408:T:C	rs111211801	T	C	-	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr19	465358	465359	chr19:465359:G:A	rs10406437	G	A	-	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	466792	466793	chr19:466793:G:A	rs10414788	G	A	-	Hoxa9_MA0594.1	0	1	-	8.306671999370346	5.7617066541620785	CCCATCCATCA
chr19	544800	544801	chr19:544801:C:T	rs80248732	C	T	C	Hoxa9_MA0594.1	0	1	+	8.306671999370346	5.7617066541620785	CCCATCCATCA
chr19	545088	545089	chr19:545089:T:C	rs12979041	T	C	-	Hoxa9_MA0594.1	20	0	+	0	0	.
chr19	548456	548457	chr19:548457:A:G	rs186818173	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr19	621069	621070	chr19:621070:G:A	rs77809401	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	779535	779536	chr19:779536:C:T	rs116171533	C	T	-	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	816538	816539	chr19:816539:G:A	rs72982155	G	A	-	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr19	841099	841100	chr19:841100:C:T	rs62132296	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr19	911452	911453	chr19:911453:A:C	rs1982772	A	C	-	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	928295	928296	chr19:928296:C:T	rs559212400	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr19	988667	988668	chr19:988668:T:C	rs3815157	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr19	999080	999081	chr19:999081:A:G	rs11669794	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	999105	999106	chr19:999106:G:A	rs7258402	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr19	1169279	1169280	chr19:1169280:A:C	rs528398239	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr19	1357496	1357497	chr19:1357497:G:A	rs1048909	G	A	g	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr19	1375355	1375356	chr19:1375356:C:G	rs4011457	C	G	c	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	1509606	1509607	chr19:1509607:T:C	rs541588145	T	C	T	Hoxa9_MA0594.1	7	1	-	7.529537515497607	0.6266038417946866	TCCATCAATCT
chr19	1744226	1744227	chr19:1744227:A:G	rs11671278	A	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr19	1780574	1780575	chr19:1780575:C:A	rs7246708	C	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	1810098	1810099	chr19:1810099:G:A	rs7260237	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	2028985	2028986	chr19:2028986:T:C	rs7257116	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	2060983	2060984	chr19:2060984:A:C	rs564984402	A	C	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr19	2467848	2467849	chr19:2467849:C:T	rs111706781	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	2534519	2534520	chr19:2534520:T:C	rs10414848	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	2534534	2534535	chr19:2534535:T:C	rs10414862	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr19	2617423	2617424	chr19:2617424:A:C	rs10411547	A	C	a	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	2636167	2636168	chr19:2636168:G:A	rs77429519	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	2648614	2648615	chr19:2648615:T:C	rs143965071	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	2699586	2699587	chr19:2699587:T:C	rs10412559	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr19	2701576	2701577	chr19:2701577:C:G	rs113341270	C	G	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	2731400	2731401	chr19:2731401:T:G	rs28754467	T	G	G	Hoxa9_MA0594.1	7	1	-	7.529537515497607	2.5449959619561073	TCCATCAATCT
chr19	2731426	2731427	chr19:2731427:C:T	rs76763741	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	2779135	2779136	chr19:2779136:T:C	rs1640262	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	2792129	2792130	chr19:2792130:C:G	rs1076447	C	G	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	2889995	2889996	chr19:2889996:C:T	rs8108339	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr19	2973645	2973646	chr19:2973646:G:A	rs79897000	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr19	3137138	3137139	chr19:3137139:G:A	rs388460	G	A	A	Hoxa9_MA0594.1	0	1	-	9.506381912457487	6.961416567249218	CCAATAAATCT
chr19	3177495	3177496	chr19:3177496:T:C	rs59257593	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	3224897	3224898	chr19:3224898:G:C	rs17852497	G	C	-	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	3308097	3308098	chr19:3308098:G:C	rs4061929	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	3323074	3323075	chr19:3323075:G:A	rs12462851	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr19	3342245	3342246	chr19:3342246:C:T	rs34282826	C	T	c	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	3451702	3451703	chr19:3451703:A:G	rs77490233	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr19	3579482	3579483	chr19:3579483:C:T	rs12460403	C	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr19	3580304	3580305	chr19:3580305:A:G	rs114111889	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	3669601	3669602	chr19:3669602:C:T	rs72980700	C	T	C	Hoxa9_MA0594.1	0	1	-	8.159236377169226	7.294050864446675	GTCATAAAACA
chr19	4246269	4246270	chr19:4246270:C:A	rs1638307	C	A	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	4467733	4467734	chr19:4467734:A:G	rs8111106	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	4576094	4576095	chr19:4576095:T:C	rs12972413	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	4593702	4593703	chr19:4593703:A:G	rs111487472	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr19	4724508	4724509	chr19:4724509:T:G	rs139719395	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	4724957	4724958	chr19:4724958:A:C	chr19:4724958:A:C	A	C	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	4754417	4754418	chr19:4754418:C:T	rs72979867	C	T	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	4838158	4838159	chr19:4838159:C:A	rs74574281	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr19	4843231	4843232	chr19:4843232:T:C	rs12608908	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr19	4843236	4843237	chr19:4843237:T:C	rs2656915	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	4889511	4889512	chr19:4889512:C:T	rs10420320	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr19	4897267	4897268	chr19:4897268:G:C	rs4807662	G	C	G	Hoxa9_MA0594.1	9	1	-	10.53382270774282	3.7354917460419728	ACAATAAATCA
chr19	4897290	4897291	chr19:4897291:T:C	rs2779172	T	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	5060948	5060949	chr19:5060949:C:T	rs755396980	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	5065768	5065769	chr19:5065769:C:G	rs4807684	C	G	C	Hoxa9_MA0594.1	9	1	+	6.266553177512536	-0.5317777841883109	GCCATCCATCC
chr19	5103606	5103607	chr19:5103607:G:A	rs961062034	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	5314677	5314678	chr19:5314678:A:G	rs112205916	A	G	A	Hoxa9_MA0594.1	10	1	+	6.945634417935501	0.30886143218273254	GGCATGAATCA
chr19	5360591	5360592	chr19:5360592:T:C	rs73534937	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	5683292	5683293	chr19:5683293:A:C	rs142898735	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	5804313	5804314	chr19:5804314:G:A	rs10401730	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr19	5860040	5860041	chr19:5860041:G:A	rs73538630	G	A	g	Hoxa9_MA0594.1	25	0	+	0	0	.
chr19	5957462	5957463	chr19:5957463:G:A	rs11879295	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	6065028	6065029	chr19:6065029:G:A	rs111802507	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	6077108	6077109	chr19:6077109:A:G	rs146449661	A	G	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	6088897	6088898	chr19:6088898:C:A	chr19:6088898:C:A	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr19	6343880	6343881	chr19:6343881:T:C	rs28421030	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	6481388	6481389	chr19:6481389:T:C	rs60926725	T	C	t	Hoxa9_MA0594.1	8	1	+	6.982587615172259	0.10929956507237026	GCCATCACTCA
chr19	6601823	6601824	chr19:6601824:A:G	rs118089856	A	G	a	Hoxa9_MA0594.1	7	1	+	7.877589431813438	0.9746557581105182	TCAATCAATCA
chr19	6632881	6632882	chr19:6632882:G:A	rs4580308	G	A	g	Hoxa9_MA0594.1	28	0	-	0	0	.
chr19	6639486	6639487	chr19:6639487:C:T	rs395409	C	T	T	Hoxa9_MA0594.1	10	1	+	6.793252766821416	7.786818122228043	CCCATATATCC
chr19	6645325	6645326	chr19:6645326:G:A	rs447573	G	A	g	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr19	6661971	6661972	chr19:6661972:T:C	rs12461880	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr19	6761367	6761368	chr19:6761368:C:T	rs59615742	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	6799665	6799666	chr19:6799666:T:C	rs2546133	T	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	6860538	6860539	chr19:6860539:T:C	rs11668992	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr19	7067159	7067160	chr19:7067160:T:C	rs2115472	T	C	c	Hoxa9_MA0594.1	7	1	-	9.764268392154055	2.861334718451134	GACATCAATCA
chr19	7169941	7169942	chr19:7169942:G:A	rs3848575	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	7199221	7199222	chr19:7199222:G:A	rs12610983	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr19	7199927	7199928	chr19:7199928:A:G	rs1035941	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr19	7251576	7251577	chr19:7251577:A:T	rs10415205	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	7368356	7368357	chr19:7368357:T:C	rs28448498	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr19	7433674	7433675	chr19:7433675:G:C	rs141756417	G	C	G	Hoxa9_MA0594.1	10	1	-	8.742804766854166	4.569187023737557	CTCATAAATCC
chr19	7560472	7560473	chr19:7560473:A:G	rs559654406	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	7691464	7691465	chr19:7691465:A:T	rs62110723	A	T	N	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr19	7771718	7771719	chr19:7771719:T:C	rs605673	T	C	c	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	7771719	7771720	chr19:7771720:G:A	rs571318	G	A	a	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	7832120	7832121	chr19:7832121:G:A	rs73923915	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	7944125	7944126	chr19:7944126:T:C	rs552771054	T	C	T	Hoxa9_MA0594.1	7	1	-	7.877589431813438	0.9746557581105182	TCAATCAATCA
chr19	7944130	7944131	chr19:7944131:T:C	rs11669069	T	C	T	Hoxa9_MA0594.1	2	1	-	7.877589431813438	2.475227414978801	TCAATCAATCA
chr19	8006916	8006917	chr19:8006917:C:G	rs1352884053	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	8203339	8203340	chr19:8203340:G:A	rs10426036	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr19	8246742	8246743	chr19:8246743:T:C	rs4591268	T	C	C	Hoxa9_MA0594.1	3	1	-	5.843516756734186	2.861720329325327	CCCATCCATCC
chr19	8673868	8673869	chr19:8673869:C:A	rs56141396	C	A	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr19	8682854	8682855	chr19:8682855:A:C	rs8111963	A	C	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr19	8682913	8682914	chr19:8682914:C:T	rs57062897	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	8696340	8696341	chr19:8696341:C:G	rs62117991	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	8704143	8704144	chr19:8704144:T:C	rs301406	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	8705680	8705681	chr19:8705681:A:T	rs2913929	A	T	A	Hoxa9_MA0594.1	8	1	+	6.952794723922254	10.422554777021706	CCAATCAAACA
chr19	9008516	9008517	chr19:9008517:C:T	rs4804393	C	T	T	Hoxa9_MA0594.1	3	1	-	8.069159876740681	11.050956304149539	GCCGTAAATCT
chr19	9572038	9572039	chr19:9572039:G:A	rs7252361	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr19	9722001	9722002	chr19:9722002:C:A	rs537928169	C	A	C	Hoxa9_MA0594.1	9	1	+	7.58145301587856	4.513623182982468	CCAATCTATCA
chr19	10022116	10022117	chr19:10022117:C:T	rs1673136	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	10043345	10043346	chr19:10043346:T:C	rs7249755	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr19	10308791	10308792	chr19:10308792:C:T	rs55905227	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr19	10580646	10580647	chr19:10580647:G:T	rs12978228	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	10604314	10604315	chr19:10604315:A:G	rs77623528	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	10648765	10648766	chr19:10648766:G:A	rs11085743	G	A	g	Hoxa9_MA0594.1	2	1	-	8.306671999370346	6.386340916243124	CCCATCCATCA
chr19	10735915	10735916	chr19:10735916:G:C	rs2360233	G	C	c	Hoxa9_MA0594.1	17	0	-	0	0	.
chr19	10847056	10847057	chr19:10847057:A:G	rs11880504	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr19	10888538	10888539	chr19:10888539:G:T	rs577964300	G	T	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	10971456	10971457	chr19:10971457:T:C	rs12981555	T	C	T	Hoxa9_MA0594.1	5	1	-	9.130625221022317	6.614481409225707	GCTATAAATCT
chr19	11047242	11047243	chr19:11047243:A:G	rs11668554	A	G	A	Hoxa9_MA0594.1	4	1	-	7.390499134806127	0.4817443554909066	CCCATACATCT
chr19	11074806	11074807	chr19:11074807:T:C	rs12462983	T	C	t	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr19	11211028	11211029	chr19:11211029:T:G	rs8113156	T	G	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	11269535	11269536	chr19:11269536:T:C	rs4804158	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	11269690	11269691	chr19:11269691:A:T	rs4804160	A	T	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	11399637	11399638	chr19:11399638:A:G	rs317913	A	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr19	11483229	11483230	chr19:11483230:T:C	rs11878849	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	11484305	11484306	chr19:11484306:G:A	rs55643734	G	A	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr19	11528727	11528728	chr19:11528728:A:C	chr19:11528728:A:C	A	C	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	11768816	11768817	chr19:11768817:G:A	rs436643	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	11770334	11770335	chr19:11770335:C:T	rs413122	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	12092071	12092072	chr19:12092072:A:G	rs10413855	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	12295998	12295999	chr19:12295999:G:A	rs548531806	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr19	12332773	12332774	chr19:12332774:C:G	rs183345782	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr19	12507884	12507885	chr19:12507885:A:G	rs7255217	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr19	12607804	12607805	chr19:12607805:T:C	rs4804202	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr19	12718882	12718883	chr19:12718883:G:A	rs6511837	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	13156367	13156368	chr19:13156368:G:A	rs151115955	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr19	13156370	13156371	chr19:13156371:G:T	rs892020	G	T	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	13191146	13191147	chr19:13191147:C:T	rs193230936	C	T	c	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	13269675	13269676	chr19:13269676:T:C	rs11666813	T	C	C	Hoxa9_MA0594.1	10	1	-	6.343945210239051	-0.2928277755137181	CCCATGCATCA
chr19	13319509	13319510	chr19:13319510:G:A	rs1502017	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr19	13328196	13328197	chr19:13328197:A:G	rs10404873	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr19	13328200	13328201	chr19:13328201:C:G	rs10404089	C	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr19	13345536	13345537	chr19:13345537:C:A	rs11879807	C	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	13345553	13345554	chr19:13345554:T:C	rs10424440	T	C	T	Hoxa9_MA0594.1	3	1	-	8.18560062555707	5.2038041981482115	ACCATAAAACA
chr19	13590607	13590608	chr19:13590608:A:G	rs12978710	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr19	13595307	13595308	chr19:13595308:G:C	rs193006944	G	C	-	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	13595315	13595316	chr19:13595316:G:C	rs146941761	G	C	-	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	13951933	13951934	chr19:13951934:G:C	rs145645420	G	C	G	Hoxa9_MA0594.1	9	1	-	8.043175694344246	1.2448447326433991	AGCATCAATCA
chr19	14259775	14259776	chr19:14259776:C:T	rs1368474	C	T	N	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	14312599	14312600	chr19:14312600:A:T	rs4471810	A	T	-	Hoxa9_MA0594.1	4	1	-	7.908141966790929	0.9993871874757083	CCAATAAATAA
chr19	14423534	14423535	chr19:14423535:C:T	rs73517852	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	14566499	14566500	chr19:14566500:A:G	rs3752221	A	G	.	Hoxa9_MA0594.1	6	1	+	8.074332694835956	1.2567319090802995	CCCATCAAACA
chr19	14733962	14733963	chr19:14733963:G:A	rs2732796	G	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	14835135	14835136	chr19:14835136:G:T	rs17276460	G	T	.	Hoxa9_MA0594.1	5	1	-	11.101943655991207	11.655360678656521	ACCATCAATCA
chr19	15483917	15483918	chr19:15483918:A:G	rs12984478	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr19	15593971	15593972	chr19:15593972:G:A	rs2060260	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr19	15629409	15629410	chr19:15629410:C:T	rs4239614	C	T	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	15629457	15629458	chr19:15629458:C:G	rs2239367	C	G	g	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	15836444	15836445	chr19:15836445:G:A	rs77196782	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	15926548	15926549	chr19:15926549:A:G	rs7249167	A	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr19	15930952	15930953	chr19:15930953:C:G	rs757413121	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	15930961	15930962	chr19:15930962:G:A	rs12981029	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr19	16034202	16034203	chr19:16034203:C:T	rs560342324	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr19	16034205	16034206	chr19:16034206:G:A	rs140960884	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	16316795	16316796	chr19:16316796:A:G	rs6512096	A	G	g	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	16445628	16445629	chr19:16445629:G:T	rs117061321	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr19	16463696	16463697	chr19:16463697:T:C	rs10401133	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr19	16872329	16872330	chr19:16872330:A:G	rs10405610	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr19	16977169	16977170	chr19:16977170:C:T	rs16981523	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr19	17508063	17508064	chr19:17508064:C:T	rs56990906	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr19	17508064	17508065	chr19:17508065:G:A	rs897263614	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr19	17512457	17512458	chr19:17512458:C:T	rs895419642	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr19	17519002	17519003	chr19:17519003:G:A	rs117179324	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	17651734	17651735	chr19:17651735:G:C	rs11667966	G	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	17846499	17846500	chr19:17846500:T:C	rs2110586	T	C	C	Hoxa9_MA0594.1	1	1	-	8.294678504924521	7.438771319837264	GACATCAATCT
chr19	17866472	17866473	chr19:17866473:A:G	rs73022604	A	G	a	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr19	17916167	17916168	chr19:17916168:C:A	chr19:17916168:C:A	C	A	c	Hoxa9_MA0594.1	16	0	+	0	0	.
chr19	18054085	18054086	chr19:18054086:G:C	rs4808742	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	18157791	18157792	chr19:18157792:G:A	rs114420160	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr19	18157830	18157831	chr19:18157831:G:A	rs900362268	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	18287524	18287525	chr19:18287525:T:G	rs12610691	T	G	T	Hoxa9_MA0594.1	7	1	-	9.064232820513286	4.079691266971787	ACAATAAATCT
chr19	18320105	18320106	chr19:18320106:C:G	rs12982719	C	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr19	18431890	18431891	chr19:18431891:C:T	rs10408290	C	T	c	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr19	18434530	18434531	chr19:18434531:A:C	rs10442	A	C	C	Hoxa9_MA0594.1	5	1	+	9.02967993770463	8.476262915039317	CCCATAAATAA
chr19	18463267	18463268	chr19:18463268:G:A	rs28537851	G	A	G	Hoxa9_MA0594.1	0	1	-	6.641965237399327	4.096999892191059	CCTGTCAATCA
chr19	18522510	18522511	chr19:18522511:T:C	rs1055912958	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	18557695	18557696	chr19:18557696:T:C	rs78342312	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	18654479	18654480	chr19:18654480:C:G	rs10403231	C	G	C	Hoxa9_MA0594.1	0	1	+	5.843516756734186	6.266553177512536	CCCATCCATCC
chr19	18654852	18654853	chr19:18654853:C:T	rs12974777	C	T	C	Hoxa9_MA0594.1	6	1	+	6.837082112140813	7.2334010995627285	CCCATCCATCT
chr19	18765498	18765499	chr19:18765499:A:G	rs3746266	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	18875835	18875836	chr19:18875836:T:C	rs73923175	T	C	t	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	19057920	19057921	chr19:19057921:G:A	rs11549381	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	19057922	19057923	chr19:19057923:C:T	rs11549380	C	T	C	Hoxa9_MA0594.1	0	1	+	6.559551194393908	4.014585849185641	CCCATCACTCA
chr19	19105995	19105996	chr19:19105996:G:A	rs78744359	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr19	19158064	19158065	chr19:19158065:G:A	rs11878301	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr19	19194617	19194618	chr19:19194618:A:G	rs78977330	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	19505216	19505217	chr19:19505217:T:C	rs3752151	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr19	19532133	19532134	chr19:19532134:C:T	rs113858307	C	T	C	Hoxa9_MA0594.1	1	1	+	8.497369115614307	7.605819354503911	GCCATCAAACA
chr19	19578421	19578422	chr19:19578422:A:G	rs10415813	A	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr19	19578664	19578665	chr19:19578665:C:T	rs16996166	C	T	C	Hoxa9_MA0594.1	1	1	+	7.994175372278161	7.102625611167765	CCAGTAAATCA
chr19	19602913	19602914	chr19:19602914:C:A	rs117524079	C	A	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	19618384	19618385	chr19:19618385:C:T	rs12976826	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	19629919	19629920	chr19:19629920:C:G	rs880090	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr19	19658880	19658881	chr19:19658881:C:T	rs28635562	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr19	19901499	19901500	chr19:19901500:C:G	rs117675947	C	G	-	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr19	19955288	19955289	chr19:19955289:A:G	rs1985787	A	G	A	Hoxa9_MA0594.1	7	1	+	8.00320666478695	1.1002729910840299	CCCATAAATTT
chr19	19956168	19956169	chr19:19956169:T:C	rs2080263	T	C	t	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	19958467	19958468	chr19:19958468:G:C	rs56343731	G	C	c	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	19959546	19959547	chr19:19959547:A:G	rs529854852	A	G	a	Hoxa9_MA0594.1	19	0	-	0	0	.
chr19	20038884	20038885	chr19:20038885:T:G	chr19:20038885:T:G	T	G	t	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr19	20038898	20038899	chr19:20038899:A:G	rs10420900	A	G	N	Hoxa9_MA0594.1	5	1	+	8.59659271700956	6.0804489052129505	AGCATAAATCA
chr19	20167746	20167747	chr19:20167747:T:A	rs79480052	T	A	.	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	20167779	20167780	chr19:20167780:C:A	rs950268690	C	A	.	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	20182341	20182342	chr19:20182342:C:T	rs118141103	C	T	.	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	20292731	20292732	chr19:20292732:G:T	rs10410777	G	T	.	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	20426295	20426296	chr19:20426296:G:A	rs2878709	G	A	.	Hoxa9_MA0594.1	11	0	-	0	0	.
chr19	20504635	20504636	chr19:20504636:G:C	rs10411882	G	C	.	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	20561175	20561176	chr19:20561176:C:T	rs34642251	C	T	.	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr19	20565243	20565244	chr19:20565244:T:C	rs75503265	T	C	.	Hoxa9_MA0594.1	10	1	+	8.00320666478695	7.0096413093803225	CCCATAAATTT
chr19	20870858	20870859	chr19:20870859:C:G	rs17679966	C	G	-	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	20914750	20914751	chr19:20914751:T:C	rs12982241	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	21092466	21092467	chr19:21092467:A:G	rs112812752	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	21419287	21419288	chr19:21419288:A:T	rs2650844	A	T	.	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr19	21430853	21430854	chr19:21430854:C:T	rs62110428	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr19	21430879	21430880	chr19:21430880:T:A	rs7253886	T	A	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	21478849	21478850	chr19:21478850:T:C	rs2562459	T	C	T	Hoxa9_MA0594.1	2	1	-	7.908141966790929	2.505779949956291	CCAATAAATAA
chr19	21482185	21482186	chr19:21482186:T:C	rs2650778	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	21611695	21611696	chr19:21611696:G:A	rs12459722	G	A	.	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	21678152	21678153	chr19:21678153:C:A	rs73018258	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	21678171	21678172	chr19:21678172:T:G	rs12975447	T	G	T	Hoxa9_MA0594.1	8	1	+	6.782471964745194	1.827576034806726	GACGTCAATCA
chr19	21691972	21691973	chr19:21691973:T:C	rs77044465	T	C	.	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	21758503	21758504	chr19:21758504:G:C	rs12459784	G	C	g	Hoxa9_MA0594.1	9	1	-	9.196147443905666	2.397816482204818	GAAATAAATCA
chr19	22425753	22425754	chr19:22425754:T:C	rs10405295	T	C	.	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr19	22820131	22820132	chr19:22820132:C:A	rs388161	C	A	.	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr19	22820716	22820717	chr19:22820717:T:G	rs393048	T	G	.	Hoxa9_MA0594.1	6	1	-	6.6047428076064225	3.3673220590413604	CCCATCAAACT
chr19	22820723	22820724	chr19:22820724:A:C	rs428257	A	C	.	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	23054484	23054485	chr19:23054485:T:C	rs2963058	T	C	-	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	23520593	23520594	chr19:23520594:A:T	rs7252948	A	T	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr19	23777224	23777225	chr19:23777225:T:C	rs7257983	T	C	T	Hoxa9_MA0594.1	7	1	-	8.557906459322226	1.654972785619305	GCAATATATCA
chr19	23983584	23983585	chr19:23983585:T:A	rs138324799	T	A	t	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	24031062	24031063	chr19:24031063:C:T	rs62117579	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr19	24034452	24034453	chr19:24034453:T:G	rs55888130	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr19	24159781	24159782	chr19:24159782:A:C	rs6511686	A	C	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	27349526	27349527	chr19:27349527:T:C	rs62109094	T	C	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr19	27360850	27360851	chr19:27360851:G:C	rs111784328	G	C	.	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr19	27360888	27360889	chr19:27360889:A:G	rs112291285	A	G	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	27392413	27392414	chr19:27392414:C:G	rs62111084	C	G	.	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	27392422	27392423	chr19:27392423:T:G	rs113843226	T	G	.	Hoxa9_MA0594.1	7	1	-	8.33117838756928	3.3466368340277803	GCAATAAATAA
chr19	27394764	27394765	chr19:27394765:A:C	rs2407353	A	C	.	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	27779364	27779365	chr19:27779365:A:G	rs2052172	A	G	g	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	27780098	27780099	chr19:27780099:G:A	rs2052175	G	A	g	Hoxa9_MA0594.1	1	1	-	8.074332694835956	7.18278293372556	CCCATCAAACA
chr19	27971209	27971210	chr19:27971210:C:A	rs75070951	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr19	27971834	27971835	chr19:27971835:T:C	rs7252575	T	C	C	Hoxa9_MA0594.1	3	1	-	6.793252766821416	3.8114563394125573	CCCATATATCC
chr19	27977300	27977301	chr19:27977301:A:G	rs2108656	A	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr19	28068019	28068020	chr19:28068020:A:G	rs75166251	A	G	A	Hoxa9_MA0594.1	3	1	+	8.729708420148697	5.747911992739839	GCCATCCATCA
chr19	28242464	28242465	chr19:28242465:A:G	rs7249972	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr19	28467343	28467344	chr19:28467344:T:C	rs2190832	T	C	T	Hoxa9_MA0594.1	4	1	+	6.266553177512536	-0.6422016018026839	GCCATCCATCC
chr19	28706089	28706090	chr19:28706090:C:A	rs16961775	C	A	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr19	29036351	29036352	chr19:29036352:A:G	rs8110651	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	29097225	29097226	chr19:29097226:C:T	rs10416902	C	T	C	Hoxa9_MA0594.1	2	1	+	7.147364983124122	5.2270338999969	GTCCTCAATCA
chr19	29118063	29118064	chr19:29118064:C:T	rs4633846	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr19	29245235	29245236	chr19:29245236:G:A	rs80070057	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	29260699	29260700	chr19:29260700:G:A	rs4804872	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr19	29277347	29277348	chr19:29277348:G:C	rs111241535	G	C	G	Hoxa9_MA0594.1	5	1	-	7.959399534385545	5.99667274525425	CCAATCAATCC
chr19	29290240	29290241	chr19:29290241:G:A	rs2865862	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr19	29483181	29483182	chr19:29483182:G:A	rs75327851	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	29503422	29503423	chr19:29503423:T:C	rs6509446	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr19	29685565	29685566	chr19:29685566:A:T	rs113075544	A	T	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	29685570	29685571	chr19:29685571:C:T	rs78937835	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr19	29837304	29837305	chr19:29837305:C:T	rs728427	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	29860106	29860107	chr19:29860107:T:G	rs7254068	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr19	29890824	29890825	chr19:29890825:A:C	rs61088682	A	C	-	Hoxa9_MA0594.1	6	1	+	6.53597216009098	3.298551411525918	TCCATCAATCC
chr19	29909250	29909251	chr19:29909251:G:A	rs255263	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	30049512	30049513	chr19:30049513:G:A	rs975456442	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	30068143	30068144	chr19:30068144:G:C	rs72486989	G	C	-	Hoxa9_MA0594.1	13	0	+	0	0	.
chr19	30255845	30255846	chr19:30255846:T:C	rs7257460	T	C	C	Hoxa9_MA0594.1	3	1	-	8.082954538162921	5.101158110754062	TCCATAAATCT
chr19	30338283	30338284	chr19:30338284:C:G	rs111067321	C	G	c	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr19	30447387	30447388	chr19:30447388:G:A	rs149855355	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr19	30447517	30447518	chr19:30447518:G:A	rs58658292	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	30487574	30487575	chr19:30487575:A:G	rs4804932	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	30547444	30547445	chr19:30547445:A:G	rs75284776	A	G	A	Hoxa9_MA0594.1	4	1	-	8.417211793056513	1.508457013741292	GCAGTAAATCA
chr19	30740968	30740969	chr19:30740969:G:C	rs16964564	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	30792122	30792123	chr19:30792123:G:A	rs74564430	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr19	30848713	30848714	chr19:30848714:T:C	rs17628152	T	C	T	Hoxa9_MA0594.1	7	1	-	8.99912740272714	2.0961937290242205	TCCATCAATCA
chr19	31038368	31038369	chr19:31038369:T:C	rs114064160	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	31348210	31348211	chr19:31348211:C:T	rs146869514	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	31350591	31350592	chr19:31350592:G:A	rs114589158	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	31600775	31600776	chr19:31600776:A:C	rs2903648	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	31671305	31671306	chr19:31671306:A:G	rs8110097	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr19	31838388	31838389	chr19:31838389:C:A	rs146264252	C	A	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr19	31989781	31989782	chr19:31989782:A:G	rs12610055	A	G	A	Hoxa9_MA0594.1	7	1	+	7.84393730902683	0.9410036353239106	GATATCAATCA
chr19	31995388	31995389	chr19:31995389:C:T	rs4377260	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	32039652	32039653	chr19:32039653:T:C	rs16966646	T	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	32091347	32091348	chr19:32091348:C:A	rs147138724	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr19	32103915	32103916	chr19:32103916:T:C	rs8105292	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	32104563	32104564	chr19:32104564:T:C	rs78390532	T	C	T	Hoxa9_MA0594.1	5	1	-	9.130625221022317	6.614481409225707	GCTATAAATCT
chr19	32105996	32105997	chr19:32105997:C:T	rs1529742	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	32142006	32142007	chr19:32142007:A:G	rs73027594	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	32693462	32693463	chr19:32693463:A:G	rs12611419	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	32694106	32694107	chr19:32694107:A:G	rs4805802	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	32699356	32699357	chr19:32699357:C:T	rs35709439	C	T	c	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr19	32842248	32842249	chr19:32842249:G:A	rs2287881	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	32862134	32862135	chr19:32862135:G:A	rs1007161	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	32873482	32873483	chr19:32873483:G:C	rs74646163	G	C	G	Hoxa9_MA0594.1	0	1	+	9.050786138279621	8.62774971750127	GCCATAAAACA
chr19	33362353	33362354	chr19:33362354:C:T	rs56187503	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr19	33395786	33395787	chr19:33395787:T:C	rs76738287	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr19	33408839	33408840	chr19:33408840:G:A	rs11084730	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	33426984	33426985	chr19:33426985:T:C	rs563423118	T	C	T	Hoxa9_MA0594.1	3	1	-	9.050786138279621	6.068989710870762	GCCATAAAACA
chr19	33426996	33426997	chr19:33426997:G:A	rs78293394	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr19	33427007	33427008	chr19:33427008:G:A	rs113501180	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	33552467	33552468	chr19:33552468:C:G	rs12609149	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr19	33642802	33642803	chr19:33642803:T:C	rs10853928	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr19	33690463	33690464	chr19:33690464:G:A	rs9676727	G	A	G	Hoxa9_MA0594.1	5	1	-	6.569324857004984	4.1491858496752965	GCCCTCAATCT
chr19	33693294	33693295	chr19:33693295:C:T	rs112596066	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	33767456	33767457	chr19:33767457:C:T	rs35134470	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr19	33767571	33767572	chr19:33767572:C:T	rs55919901	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	33771687	33771688	chr19:33771688:G:A	rs921532155	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr19	33828781	33828782	chr19:33828782:G:C	rs75257270	G	C	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	33870863	33870864	chr19:33870864:C:G	rs58843815	C	G	C	Hoxa9_MA0594.1	5	1	+	5.843516756734186	3.8807899676028903	CCCATCCATCC
chr19	33872468	33872469	chr19:33872469:T:C	rs113630864	T	C	c	Hoxa9_MA0594.1	4	1	+	5.843516756734186	-1.0652380225810347	CCCATCCATCC
chr19	33872481	33872482	chr19:33872482:C:A	rs12982585	C	A	t	Hoxa9_MA0594.1	17	0	+	0	0	.
chr19	33872616	33872617	chr19:33872617:T:C	rs138677528	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr19	33872641	33872642	chr19:33872642:C:A	rs866263303	C	A	c	Hoxa9_MA0594.1	17	0	+	0	0	.
chr19	33877791	33877792	chr19:33877792:G:T	rs7249257	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr19	33885112	33885113	chr19:33885113:G:A	rs2017094	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	34125235	34125236	chr19:34125236:G:T	rs73036613	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	34174572	34174573	chr19:34174573:A:G	chr19:34174573:A:G	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	34218433	34218434	chr19:34218434:G:A	chr19:34218434:G:A	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr19	34218435	34218436	chr19:34218436:G:T	rs1038204105	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr19	34504633	34504634	chr19:34504634:A:G	rs116292253	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	34678505	34678506	chr19:34678506:A:G	rs8111256	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr19	35004495	35004496	chr19:35004496:G:A	rs73038362	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	35048812	35048813	chr19:35048813:G:A	rs73040327	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	35138109	35138110	chr19:35138110:T:C	rs56168231	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr19	35216576	35216577	chr19:35216577:A:G	rs7247282	A	G	A	Hoxa9_MA0594.1	10	1	+	6.952794723922254	0.31602173816948476	CCAATCAAACA
chr19	35217647	35217648	chr19:35217648:C:T	rs78904834	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	35262013	35262014	chr19:35262014:G:A	rs2073899	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	35430604	35430605	chr19:35430605:C:A	rs73039344	C	A	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	35690599	35690600	chr19:35690600:G:A	rs73602823	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	35748498	35748499	chr19:35748499:A:G	rs559148800	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr19	35748515	35748516	chr19:35748516:G:A	rs183461712	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	35861032	35861033	chr19:35861033:G:T	rs35854130	G	T	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr19	35901419	35901420	chr19:35901420:G:A	rs76369906	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr19	35936156	35936157	chr19:35936157:C:G	chr19:35936157:C:G	C	G	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	36042332	36042333	chr19:36042333:C:T	rs56270047	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr19	36161282	36161283	chr19:36161283:A:C	rs11665903	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr19	36605999	36606000	chr19:36606000:C:G	rs77050775	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	36606005	36606006	chr19:36606006:G:A	rs62116092	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr19	36986623	36986624	chr19:36986624:T:C	rs1667350	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr19	37311210	37311211	chr19:37311211:G:C	rs12462487	G	C	g	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	37520087	37520088	chr19:37520088:C:G	rs76112730	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	37572445	37572446	chr19:37572446:G:A	rs547118933	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr19	37899012	37899013	chr19:37899013:T:A	rs35209753	T	A	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	37928781	37928782	chr19:37928782:A:G	rs1336643504	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	37930970	37930971	chr19:37930971:A:T	rs62112286	A	T	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	38050105	38050106	chr19:38050106:G:A	rs1654341	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	38149624	38149625	chr19:38149625:C:T	rs145689284	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	38339256	38339257	chr19:38339257:G:A	rs116683729	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr19	38339265	38339266	chr19:38339266:A:C	rs1252865725	A	C	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr19	38374776	38374777	chr19:38374777:C:A	rs200109220	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr19	38374778	38374779	chr19:38374779:G:A	rs201665089	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	38653342	38653343	chr19:38653343:T:C	rs77405583	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr19	38655211	38655212	chr19:38655212:A:G	rs73933039	A	G	A	Hoxa9_MA0594.1	3	1	+	7.983126471253447	5.00133004384459	GCCATAAATAT
chr19	38731427	38731428	chr19:38731428:G:A	rs183507066	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr19	38904690	38904691	chr19:38904691:T:C	rs11879872	T	C	T	Hoxa9_MA0594.1	3	1	-	8.88286440866876	5.901067981259902	GCAATGAATCA
chr19	38919969	38919970	chr19:38919970:G:A	rs143392503	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	38977706	38977707	chr19:38977707:T:A	rs12984565	T	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	39128567	39128568	chr19:39128568:T:A	rs188677165	T	A	T	Hoxa9_MA0594.1	10	1	-	8.773111023127315	7.303521135897781	CAAATAAATCA
chr19	39356321	39356322	chr19:39356322:C:T	rs58586829	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr19	39424996	39424997	chr19:39424997:G:A	rs31727	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	39705875	39705876	chr19:39705876:G:A	rs146538011	G	A	-	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr19	39847407	39847408	chr19:39847408:G:A	rs12986238	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr19	39890466	39890467	chr19:39890467:T:G	rs867085674	T	G	.	Hoxa9_MA0594.1	6	1	-	9.642272946632424	6.404852198067362	ATAATAAATCA
chr19	39890479	39890480	chr19:39890480:C:G	rs2542333	C	G	.	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr19	39971557	39971558	chr19:39971558:A:G	rs234370	A	G	G	Hoxa9_MA0594.1	6	1	-	9.256408009457576	8.86008902203566	CCCATATATCA
chr19	40376444	40376445	chr19:40376445:T:C	rs74429191	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	40577537	40577538	chr19:40577538:C:T	rs2290682	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	40592964	40592965	chr19:40592965:C:T	rs56013937	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	40754925	40754926	chr19:40754926:C:T	rs2607416	C	T	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr19	40887229	40887230	chr19:40887230:A:G	rs28503746	A	G	a	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr19	40922510	40922511	chr19:40922511:A:G	chr19:40922511:A:G	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	40922510	40922511	chr19:40922511:A:T	rs11083589	A	T	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	40945670	40945671	chr19:40945671:A:G	rs4062238	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr19	40971729	40971730	chr19:40971730:C:G	rs146829868	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	40980160	40980161	chr19:40980161:A:G	rs8106911	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr19	40980176	40980177	chr19:40980177:T:C	rs4803414	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	40989849	40989850	chr19:40989850:T:C	rs2054675	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	41031420	41031421	chr19:41031421:G:A	rs10403268	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	41225829	41225830	chr19:41225830:T:G	rs80264902	T	G	T	Hoxa9_MA0594.1	2	1	-	8.01767889594621	9.139216866859913	ACAATGAATCA
chr19	41225843	41225844	chr19:41225844:T:G	rs59423102	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr19	41225845	41225846	chr19:41225846:G:T	rs975022523	G	T	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	41463621	41463622	chr19:41463622:C:T	rs117653620	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr19	41565994	41565995	chr19:41565995:A:C	rs28433747	A	C	-	Hoxa9_MA0594.1	4	1	-	9.503973926077597	2.5952191467623775	GCCATCAATCC
chr19	41621202	41621203	chr19:41621203:C:T	rs3848567	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	41642381	41642382	chr19:41642382:T:A	rs2109072	T	A	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr19	41684615	41684616	chr19:41684616:G:A	rs138615055	G	A	g	Hoxa9_MA0594.1	13	0	-	0	0	.
chr19	41700821	41700822	chr19:41700822:T:G	rs112860809	T	G	N	Hoxa9_MA0594.1	27	0	-	0	0	.
chr19	41700841	41700842	chr19:41700842:T:C	rs80328865	T	C	N	Hoxa9_MA0594.1	7	1	-	6.641965237399327	-0.2609684363035929	CCTGTCAATCA
chr19	41810117	41810118	chr19:41810118:G:A	rs113110038	G	A	g	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	41810164	41810165	chr19:41810165:T:C	rs734109	T	C	N	Hoxa9_MA0594.1	29	0	+	0	0	.
chr19	43674662	43674663	chr19:43674663:C:T	rs62114103	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	43785671	43785672	chr19:43785672:A:G	rs11669175	A	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	43794835	43794836	chr19:43794836:A:G	rs11083724	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	44105139	44105140	chr19:44105140:T:C	rs4803680	T	C	.	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	44291137	44291138	chr19:44291138:C:T	rs2609874	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	44544196	44544197	chr19:44544197:G:A	rs546868327	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr19	44562796	44562797	chr19:44562797:A:G	rs12459712	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	44784911	44784912	chr19:44784912:T:A	rs116735164	T	A	T	Hoxa9_MA0594.1	3	1	-	10.074502860705875	3.2317662180981857	CCCATCAATCT
chr19	44892072	44892073	chr19:44892073:A:G	rs2075649	A	G	.	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	44955834	44955835	chr19:44955835:T:C	rs78965532	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr19	45019473	45019474	chr19:45019474:C:T	rs35912475	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	45203606	45203607	chr19:45203607:G:A	rs7251161	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr19	45331566	45331567	chr19:45331567:T:C	rs60152947	T	C	T	Hoxa9_MA0594.1	7	1	-	7.8637947703911975	0.9608610966882778	GCAGTCAATCA
chr19	45370658	45370659	chr19:45370659:A:G	rs113625921	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr19	45370683	45370684	chr19:45370684:G:C	rs3810366	G	C	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr19	45522129	45522130	chr19:45522130:G:A	rs2301284	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	45522141	45522142	chr19:45522142:G:C	rs2301285	G	C	G	Hoxa9_MA0594.1	2	1	-	8.985332741304902	2.4614327535565614	GCCGTCAATCA
chr19	45577212	45577213	chr19:45577213:C:G	rs79908108	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr19	45577853	45577854	chr19:45577854:A:G	rs187034895	A	G	A	Hoxa9_MA0594.1	7	1	+	9.181612572863987	2.2786788991610663	ACTATCAATCA
chr19	45731284	45731285	chr19:45731285:G:C	rs190161729	G	C	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr19	45995640	45995641	chr19:45995641:C:T	rs930227	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	46302999	46303000	chr19:46303000:T:C	rs16980431	T	C	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr19	46392052	46392053	chr19:46392053:C:T	rs73563025	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	46473819	46473820	chr19:46473820:C:T	rs189464510	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	46499088	46499089	chr19:46499089:T:C	rs77480971	T	C	T	Hoxa9_MA0594.1	3	1	-	8.138130176594235	5.156333749185377	CTCATAAATAA
chr19	46608405	46608406	chr19:46608406:T:C	rs3729760	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr19	46614379	46614380	chr19:46614380:C:G	rs67291917	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	46638341	46638342	chr19:46638342:G:A	rs139519510	G	A	g	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	46670947	46670948	chr19:46670948:A:G	rs314658	A	G	A	Hoxa9_MA0594.1	10	1	-	7.983126471253447	6.98956111584682	GCCATAAATAT
chr19	46670954	46670955	chr19:46670955:T:C	rs74354969	T	C	T	Hoxa9_MA0594.1	3	1	-	7.983126471253447	5.00133004384459	GCCATAAATAT
chr19	46975969	46975970	chr19:46975970:T:G	rs60438150	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	47107942	47107943	chr19:47107943:A:G	rs2279476	A	G	A	Hoxa9_MA0594.1	7	1	+	8.952964889792172	2.0500312160892515	CCAATCAATCT
chr19	47141500	47141501	chr19:47141501:G:A	rs111484931	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr19	47305349	47305350	chr19:47305350:T:G	rs757575871	T	G	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr19	47422080	47422081	chr19:47422081:T:C	rs7245844	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr19	47424745	47424746	chr19:47424746:G:A	rs10421978	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr19	47685484	47685485	chr19:47685485:G:A	rs139994722	G	A	G	Hoxa9_MA0594.1	1	1	-	7.260118532919163	6.368568771808768	GCCATCCATCT
chr19	47714681	47714682	chr19:47714682:C:T	rs2914442	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr19	47714687	47714688	chr19:47714688:A:C	rs6509334	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr19	48004296	48004297	chr19:48004297:T:C	rs10411890	T	C	C	Hoxa9_MA0594.1	8	1	+	6.837082112140813	-0.036205937959076506	CCCATCCATCT
chr19	48202700	48202701	chr19:48202701:C:T	rs1968442	C	T	c	Hoxa9_MA0594.1	9	1	+	7.4908861940535	4.8661729754692615	GTAATCAATCC
chr19	48260491	48260492	chr19:48260492:T:C	rs4802451	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr19	48421705	48421706	chr19:48421706:G:A	rs1654671	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr19	48713668	48713669	chr19:48713669:A:G	rs281384	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr19	48770585	48770586	chr19:48770586:G:A	rs62132806	G	A	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr19	48790800	48790801	chr19:48790801:C:A	rs11881731	C	A	c	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	48795851	48795852	chr19:48795852:T:C	rs73587808	T	C	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	49453016	49453017	chr19:49453017:C:G	rs7259076	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr19	49453032	49453033	chr19:49453033:C:T	rs3760669	C	T	T	Hoxa9_MA0594.1	2	1	+	8.742804766854166	6.822473683726944	CTCATAAATCC
chr19	49888904	49888905	chr19:49888905:A:G	rs112862536	A	G	A	Hoxa9_MA0594.1	4	1	-	7.736199956390875	0.827445177075655	CTCATAAAACA
chr19	49897874	49897875	chr19:49897875:C:T	rs568724716	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr19	49954088	49954089	chr19:49954089:C:T	rs10420344	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr19	50240924	50240925	chr19:50240925:C:T	rs7248451	C	T	c	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr19	50347158	50347159	chr19:50347159:T:C	rs56079106	T	C	T	Hoxa9_MA0594.1	3	1	-	7.877589431813438	4.895793004404579	TCAATCAATCA
chr19	50433329	50433330	chr19:50433330:T:C	rs3816551	T	C	.	Hoxa9_MA0594.1	22	0	-	0	0	.
chr19	50438065	50438066	chr19:50438066:A:G	rs2445829	A	G	A	Hoxa9_MA0594.1	7	1	+	5.843516756734186	-1.0594169169687344	CCCATCCATCC
chr19	50438431	50438432	chr19:50438432:G:A	rs12462762	G	A	G	Hoxa9_MA0594.1	2	1	-	5.843516756734186	3.9231856736069632	CCCATCCATCC
chr19	50677730	50677731	chr19:50677731:C:T	rs68187152	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr19	50705534	50705535	chr19:50705535:G:A	rs143158587	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	50920869	50920870	chr19:50920870:G:A	rs6509501	G	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr19	50922147	50922148	chr19:50922148:C:A	rs7254626	C	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr19	51081340	51081341	chr19:51081341:T:G	rs10500304	T	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr19	51235661	51235662	chr19:51235662:G:A	rs35112940	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr19	51256270	51256271	chr19:51256271:T:C	rs10402797	T	C	t	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	51350887	51350888	chr19:51350888:A:G	chr19:51350888:A:G	A	G	A	Hoxa9_MA0594.1	6	1	+	9.45271635848298	2.635115572727325	GCCATAAATAA
chr19	51521449	51521450	chr19:51521450:A:G	rs2902665	A	G	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr19	51599349	51599350	chr19:51599350:C:G	rs55712999	C	G	C	Hoxa9_MA0594.1	9	1	+	9.064232820513286	2.265901858812439	ACAATAAATCT
chr19	51654913	51654914	chr19:51654914:G:C	rs12459742	G	C	G	Hoxa9_MA0594.1	5	1	-	8.702990986792262	6.7402641976609665	CCCATCTATCA
chr19	51664022	51664023	chr19:51664023:C:T	rs374156533	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr19	51795027	51795028	chr19:51795028:T:C	rs12609373	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr19	51983590	51983591	chr19:51983591:C:T	rs8110287	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr19	52027528	52027529	chr19:52027529:A:G	rs189242969	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr19	52034322	52034323	chr19:52034323:T:G	rs11666149	T	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr19	52176377	52176378	chr19:52176378:A:G	rs79036922	A	G	A	Hoxa9_MA0594.1	2	1	-	7.7140234448373395	9.634354527964561	CCTATAAATCC
chr19	52188933	52188934	chr19:52188934:C:T	rs959732968	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	52189518	52189519	chr19:52189519:G:A	rs111939795	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr19	52203737	52203738	chr19:52203738:T:C	rs4802902	T	C	C	Hoxa9_MA0594.1	3	1	-	8.577208198357003	5.595411770948144	GCTATCAATCT
chr19	52212462	52212463	chr19:52212463:G:A	rs10403154	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr19	52646935	52646936	chr19:52646936:T:G	rs58695109	T	G	t	Hoxa9_MA0594.1	6	1	-	7.552026280333961	4.314605531768899	ACAGTAAATCA
chr19	52686182	52686183	chr19:52686183:T:G	rs2869088	T	G	N	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	52741703	52741704	chr19:52741704:T:C	rs10404577	T	C	N	Hoxa9_MA0594.1	4	1	+	7.982910014867283	1.0741552355520623	AACATAAATCT
chr19	52763835	52763836	chr19:52763836:T:C	rs28631564	T	C	t	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr19	52898705	52898706	chr19:52898706:T:G	rs11670402	T	G	t	Hoxa9_MA0594.1	2	1	-	8.219694000462	9.341231971375704	CAAATCAATCA
chr19	52899752	52899753	chr19:52899753:G:A	rs184185789	G	A	N	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	52904543	52904544	chr19:52904544:C:T	rs7254555	C	T	-	Hoxa9_MA0594.1	12	0	-	0	0	.
chr19	52936697	52936698	chr19:52936698:T:C	rs10402003	T	C	t	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr19	52938989	52938990	chr19:52938990:A:G	rs75367093	A	G	a	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	52938991	52938992	chr19:52938992:G:A	chr19:52938992:G:A	G	A	g	Hoxa9_MA0594.1	28	0	+	0	0	.
chr19	52944844	52944845	chr19:52944845:A:G	rs6509709	A	G	N	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr19	53134302	53134303	chr19:53134303:A:G	rs112660066	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr19	53545254	53545255	chr19:53545255:A:G	rs186807287	A	G	a	Hoxa9_MA0594.1	14	0	+	0	0	.
chr19	53757412	53757413	chr19:53757413:A:T	rs305945	A	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	53769669	53769670	chr19:53769670:G:A	rs74413179	G	A	g	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	53876894	53876895	chr19:53876895:G:C	rs307937	G	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr19	54063998	54063999	chr19:54063999:A:G	rs612529	A	G	A	Hoxa9_MA0594.1	3	1	+	7.118210716167953	4.136414288759093	CCCATGAATCC
chr19	54158670	54158671	chr19:54158671:T:G	rs79332591	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr19	54210446	54210447	chr19:54210447:C:T	rs532178638	C	T	c	Hoxa9_MA0594.1	15	0	-	0	0	.
chr19	54274139	54274140	chr19:54274140:G:C	rs557629234	G	C	g	Hoxa9_MA0594.1	9	1	-	9.165841187632518	2.367510225931671	GTCATAAATCC
chr19	54281473	54281474	chr19:54281474:T:C	rs117972222	T	C	-	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	54365557	54365558	chr19:54365558:G:A	rs2112821	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr19	54432671	54432672	chr19:54432672:A:G	rs3745423	A	G	a	Hoxa9_MA0594.1	7	1	+	5.843516756734186	-1.0594169169687344	CCCATCCATCC
chr19	54463969	54463970	chr19:54463970:G:T	rs540550517	G	T	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr19	54464002	54464003	chr19:54464003:C:G	chr19:54464003:C:G	C	G	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr19	54464137	54464138	chr19:54464138:G:T	rs374038754	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	54464140	54464141	chr19:54464141:T:C	rs76692276	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr19	54594851	54594852	chr19:54594852:A:G	rs10416917	A	G	a	Hoxa9_MA0594.1	3	1	+	8.306671999370346	5.3248755719614875	CCCATCCATCA
chr19	54696010	54696011	chr19:54696011:G:A	rs10423420	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr19	54713282	54713283	chr19:54713283:A:G	rs2296370	A	G	A	Hoxa9_MA0594.1	7	1	+	7.413274521439227	0.5103408477363072	GCAATGAATCT
chr19	54770001	54770002	chr19:54770002:T:G	rs200420894	T	G	.	Hoxa9_MA0594.1	11	0	-	0	0	.
chr19	54770016	54770017	chr19:54770017:A:G	rs201335507	A	G	.	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr19	54790142	54790143	chr19:54790143:G:C	rs597068	G	C	.	Hoxa9_MA0594.1	16	0	+	0	0	.
chr19	54793355	54793356	chr19:54793356:C:T	rs201030957	C	T	.	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr19	54810141	54810142	chr19:54810142:A:G	rs604999	A	G	.	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr19	54916279	54916280	chr19:54916280:C:G	rs775837	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr19	55060353	55060354	chr19:55060354:G:A	rs62124162	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	55156828	55156829	chr19:55156829:T:G	rs2278281	T	G	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr19	55156867	55156868	chr19:55156868:G:C	rs28526132	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr19	55308476	55308477	chr19:55308477:C:T	rs1172822	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr19	55398541	55398542	chr19:55398542:T:C	rs12985701	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr19	55446367	55446368	chr19:55446368:T:C	rs1260754705	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	55499132	55499133	chr19:55499133:A:G	rs7258554	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr19	55507998	55507999	chr19:55507999:G:T	rs12461034	G	T	G	Hoxa9_MA0594.1	1	1	-	6.559551194393908	4.356690417834204	CCCATCACTCA
chr19	56134712	56134713	chr19:56134713:A:C	rs2631627	A	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr19	56159260	56159261	chr19:56159261:T:C	rs114850545	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr19	56234747	56234748	chr19:56234748:G:A	rs2868537	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	56274038	56274039	chr19:56274039:C:T	rs10427066	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr19	56369374	56369375	chr19:56369375:G:C	rs12972381	G	C	G	Hoxa9_MA0594.1	9	1	-	7.84393730902683	1.0456063473259836	GATATCAATCA
chr19	56377080	56377081	chr19:56377081:A:G	rs2304124	A	G	A	Hoxa9_MA0594.1	7	1	+	7.670746559416154	0.767812885713234	CTCGTCAATCA
chr19	56377084	56377085	chr19:56377085:A:C	rs2304125	A	C	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	56420302	56420303	chr19:56420303:C:T	rs917650	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr19	56539917	56539918	chr19:56539918:A:G	rs4801172	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr19	56619238	56619239	chr19:56619239:C:A	rs12985817	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr19	56648993	56648994	chr19:56648994:A:G	rs12608514	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr19	56715577	56715578	chr19:56715578:T:C	rs62133213	T	C	C	Hoxa9_MA0594.1	10	1	-	7.801541603022757	1.1647686172699885	GACATGAATCA
chr19	56715594	56715595	chr19:56715595:A:G	rs59324597	A	G	a	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr19	56900418	56900419	chr19:56900419:C:T	rs77949882	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr19	56981000	56981001	chr19:56981001:G:T	rs73936730	G	T	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr19	57127612	57127613	chr19:57127613:C:T	rs142262483	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr19	57227878	57227879	chr19:57227879:A:G	rs2361128	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr19	57338786	57338787	chr19:57338787:A:C	rs7255435	A	C	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr19	57487578	57487579	chr19:57487579:A:G	rs538634302	A	G	A	Hoxa9_MA0594.1	7	1	+	7.369292133737666	0.46635846003474635	ATCATCTATCA
chr19	57487583	57487584	chr19:57487584:C:A	rs1452800147	C	A	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr19	57664947	57664948	chr19:57664948:C:T	rs760739743	C	T	c	Hoxa9_MA0594.1	26	0	-	0	0	.
chr19	57816748	57816749	chr19:57816749:A:G	rs148728323	A	G	.	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr19	57946562	57946563	chr19:57946563:A:G	rs257654	A	G	A	Hoxa9_MA0594.1	10	1	+	7.277745585011086	0.6409725992583173	CTCCTAAATCA
chr19	58311829	58311830	chr19:58311830:G:A	rs58371330	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr19	58311854	58311855	chr19:58311855:T:C	rs61468392	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr19	58312796	58312797	chr19:58312797:T:C	rs8110941	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr19	58381304	58381305	chr19:58381305:T:C	rs8102402	T	C	c	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr19	58381316	58381317	chr19:58381317:C:G	rs75938324	C	G	c	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	265208	265209	chr2:265209:C:G	rs57562699	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	265240	265241	chr2:265241:G:T	rs3020766	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	782576	782577	chr2:782577:C:T	rs10183412	C	T	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	795330	795331	chr2:795331:C:T	rs6744157	C	T	C	Hoxa9_MA0594.1	5	1	-	8.08407129645524	10.60021510825185	GCTATGAATCA
chr2	795920	795921	chr2:795921:C:T	rs12714420	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	824752	824753	chr2:824753:T:C	rs12467306	T	C	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	918328	918329	chr2:918329:T:C	rs4854428	T	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	918360	918361	chr2:918361:A:T	rs4854429	A	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	1067817	1067818	chr2:1067818:C:T	rs34787379	C	T	C	Hoxa9_MA0594.1	1	1	+	9.115713343191864	8.224163582081468	CCCGTAAATCA
chr2	1067844	1067845	chr2:1067845:G:A	rs35546657	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	1131171	1131172	chr2:1131172:T:C	rs72766713	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	1172128	1172129	chr2:1172129:T:C	rs4346415	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	1418599	1418600	chr2:1418600:T:C	rs10207656	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	1451366	1451367	chr2:1451367:G:A	rs28909395	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	1455433	1455434	chr2:1455434:C:T	rs10205420	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	1707416	1707417	chr2:1707417:A:T	rs7568628	A	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	1803610	1803611	chr2:1803611:G:A	rs79429984	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	1885198	1885199	chr2:1885199:T:C	rs10176277	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	1979601	1979602	chr2:1979602:A:C	rs2304008	A	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	2484066	2484067	chr2:2484067:A:G	rs4268949	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	2523868	2523869	chr2:2523869:T:C	rs6720427	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	2561928	2561929	chr2:2561929:C:T	rs528556638	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	2769725	2769726	chr2:2769726:G:A	rs568367071	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	2881713	2881714	chr2:2881714:G:A	rs117238406	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	2933656	2933657	chr2:2933657:G:C	rs78429583	G	C	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	2933663	2933664	chr2:2933664:G:A	rs10198295	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	2933669	2933670	chr2:2933670:G:T	rs7559749	G	T	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	3074779	3074780	chr2:3074780:T:C	rs62119854	T	C	T	Hoxa9_MA0594.1	7	1	-	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr2	3074801	3074802	chr2:3074802:T:G	rs12714370	T	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	3105917	3105918	chr2:3105918:G:A	rs1993251	G	A	G	Hoxa9_MA0594.1	1	1	-	8.592331766899832	7.700782005789437	GCCCTAAATCA
chr2	3141464	3141465	chr2:3141465:T:C	rs12465429	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	3146909	3146910	chr2:3146910:A:G	rs112229794	A	G	-	Hoxa9_MA0594.1	6	1	+	10.652542986825011	3.8349422010693557	CTCATCAATCA
chr2	3146913	3146914	chr2:3146914:A:G	rs762811446	A	G	-	Hoxa9_MA0594.1	10	1	+	10.652542986825011	4.015770001072243	CTCATCAATCA
chr2	3377898	3377899	chr2:3377899:G:A	chr2:3377899:G:A	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	3379321	3379322	chr2:3379322:C:T	rs114130445	C	T	C	Hoxa9_MA0594.1	1	1	+	8.702990986792262	7.811441225681866	CCCATCTATCA
chr2	3523750	3523751	chr2:3523751:A:G	rs10192909	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	3644907	3644908	chr2:3644908:C:G	rs934292	C	G	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	3868473	3868474	chr2:3868474:C:T	rs13014469	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	4003137	4003138	chr2:4003138:T:C	rs6542670	T	C	C	Hoxa9_MA0594.1	3	1	-	9.581365958804113	6.599569531395254	CCCATGAATCA
chr2	4123027	4123028	chr2:4123028:A:G	rs1437700	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	4139769	4139770	chr2:4139770:G:T	rs2314223	G	T	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	4370653	4370654	chr2:4370654:A:G	rs73912233	A	G	A	Hoxa9_MA0594.1	10	1	+	8.66099466428206	2.0242216785292895	TTCATAAATCA
chr2	4871333	4871334	chr2:4871334:C:T	rs12477026	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	4978682	4978683	chr2:4978683:T:A	rs140741164	T	A	T	Hoxa9_MA0594.1	5	1	-	9.472796552016483	6.4992405220214815	CCCATAAATTA
chr2	5123664	5123665	chr2:5123665:C:T	rs12463884	C	T	c	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	5249853	5249854	chr2:5249854:A:G	rs16863472	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	5369751	5369752	chr2:5369752:C:G	rs75108867	C	G	C	Hoxa9_MA0594.1	2	1	+	7.838158659038301	1.3142586712899615	GTCATCCATCA
chr2	5803369	5803370	chr2:5803370:C:T	rs2564081	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	5849817	5849818	chr2:5849818:C:T	chr2:5849818:C:T	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	5849826	5849827	chr2:5849827:G:C	rs11900424	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	6024889	6024890	chr2:6024890:T:C	rs16864588	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	6186503	6186504	chr2:6186504:T:C	rs73143106	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	6394682	6394683	chr2:6394683:T:C	rs11681056	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	6425176	6425177	chr2:6425177:T:G	rs77048763	T	G	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	6450444	6450445	chr2:6450445:A:C	rs56325563	A	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	6506820	6506821	chr2:6506821:C:T	rs306182	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	6605919	6605920	chr2:6605920:C:A	rs11675022	C	A	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	6937899	6937900	chr2:6937900:G:A	rs771302	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	6958463	6958464	chr2:6958464:G:A	rs115547989	G	A	A	Hoxa9_MA0594.1	2	1	-	9.139216866859913	7.21888578373269	ACCATGAATCA
chr2	7010079	7010080	chr2:7010080:A:G	rs443852	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	7027021	7027022	chr2:7027022:C:G	rs416416	C	G	G	Hoxa9_MA0594.1	3	1	-	8.647200002859819	7.700782005789437	GTCGTAAATCA
chr2	7027041	7027042	chr2:7027042:G:A	rs192589545	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	7057857	7057858	chr2:7057858:A:G	rs432588	A	G	G	Hoxa9_MA0594.1	10	1	-	8.614832151347091	7.621266795940464	CTAATAAATCT
chr2	7180433	7180434	chr2:7180434:G:A	rs11677869	G	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	7203193	7203194	chr2:7203194:C:G	rs17678724	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	7692304	7692305	chr2:7692305:T:C	rs13023254	T	C	t	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	7964193	7964194	chr2:7964194:G:A	rs74910875	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	8058947	8058948	chr2:8058948:G:A	rs13418810	G	A	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	8171843	8171844	chr2:8171844:G:A	rs56007265	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	8298828	8298829	chr2:8298829:A:G	rs16866666	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	8300953	8300954	chr2:8300954:C:T	rs72781041	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	8420116	8420117	chr2:8420117:A:G	rs1032840	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	8488044	8488045	chr2:8488045:T:G	rs73912822	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	8488197	8488198	chr2:8488198:A:G	rs755074794	A	G	A	Hoxa9_MA0594.1	3	1	+	8.219694000462	5.237897573053141	CAAATCAATCA
chr2	8697504	8697505	chr2:8697505:A:T	rs12472367	A	T	A	Hoxa9_MA0594.1	8	1	-	8.843479834418904	5.373719781319451	ATTATAAATCA
chr2	8746411	8746412	chr2:8746412:A:G	rs12151751	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	9144465	9144466	chr2:9144466:T:C	rs140851814	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	9151940	9151941	chr2:9151941:C:T	rs3929500	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	9271311	9271312	chr2:9271312:G:A	rs11682874	G	A	g	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	9359729	9359730	chr2:9359730:A:G	rs2715868	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	9400719	9400720	chr2:9400720:C:T	rs10204214	C	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	9539405	9539406	chr2:9539406:C:T	rs185346465	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	10020877	10020878	chr2:10020878:G:A	rs13027081	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	10124898	10124899	chr2:10124899:G:A	rs72544297	G	A	G	Hoxa9_MA0594.1	9	1	-	10.507458459354975	7.882745240770737	GTAATAAATCA
chr2	10124899	10124900	chr2:10124900:A:G	rs202195880	A	G	A	Hoxa9_MA0594.1	8	1	-	10.507458459354975	3.634170409255085	GTAATAAATCA
chr2	10165307	10165308	chr2:10165308:C:T	rs35110249	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	10172415	10172416	chr2:10172416:C:T	rs75461262	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	10413750	10413751	chr2:10413751:A:G	rs3755262	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	10413771	10413772	chr2:10413772:C:T	rs3755261	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	10487217	10487218	chr2:10487218:C:G	rs141351342	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	10572796	10572797	chr2:10572797:C:T	rs13011270	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	10947365	10947366	chr2:10947366:T:C	rs143789119	T	C	T	Hoxa9_MA0594.1	4	1	+	8.01767889594621	1.1089241166309898	ACAATGAATCA
chr2	10987578	10987579	chr2:10987579:T:C	rs7573335	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	11144889	11144890	chr2:11144890:T:C	rs6717388	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	11154491	11154492	chr2:11154492:T:A	rs73175632	T	A	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	11234340	11234341	chr2:11234341:C:A	rs1201160729	C	A	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	11362954	11362955	chr2:11362955:T:C	rs10189756	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	11395396	11395397	chr2:11395397:G:T	rs4260216	G	T	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	11622243	11622244	chr2:11622244:C:A	rs56335861	C	A	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	11676851	11676852	chr2:11676852:A:G	rs4467248	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	11695732	11695733	chr2:11695733:G:A	rs4517949	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	11777778	11777779	chr2:11777779:T:C	rs2278513	T	C	T	Hoxa9_MA0594.1	10	1	-	8.774295001881132	2.1375220161283632	GCAATAAATTA
chr2	11799308	11799309	chr2:11799309:C:T	rs74428090	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	11799314	11799315	chr2:11799315:C:T	rs150314956	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	11849537	11849538	chr2:11849538:T:G	rs7578171	T	G	T	Hoxa9_MA0594.1	6	1	-	9.080937505299248	5.843516756734186	CCCATCAATCC
chr2	12010694	12010695	chr2:12010695:C:T	rs12618497	C	T	.	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	12228084	12228085	chr2:12228085:G:A	rs56230412	G	A	g	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	12318046	12318047	chr2:12318047:T:A	rs1231187438	T	A	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	12348686	12348687	chr2:12348687:T:C	rs12612952	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	12389489	12389490	chr2:12389490:T:C	rs4511699	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	12439052	12439053	chr2:12439053:G:A	rs10211429	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	12671970	12671971	chr2:12671971:A:G	rs33974122	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	12716812	12716813	chr2:12716813:C:T	rs183249684	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	12716817	12716818	chr2:12716818:C:A	rs927477480	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	12862690	12862691	chr2:12862691:A:G	rs73914188	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	13021712	13021713	chr2:13021713:C:T	rs6750714	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	13050702	13050703	chr2:13050703:G:C	rs13420842	G	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	13496677	13496678	chr2:13496678:T:G	rs10929856	T	G	G	Hoxa9_MA0594.1	8	1	+	9.02967993770463	4.074784007766162	CCCATAAATAA
chr2	13554037	13554038	chr2:13554038:T:G	rs150812089	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	14122236	14122237	chr2:14122237:A:G	rs11679221	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	14872973	14872974	chr2:14872974:C:T	rs148818642	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	14872976	14872977	chr2:14872977:G:A	rs113829819	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	15003774	15003775	chr2:15003775:G:T	rs72771027	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	15181234	15181235	chr2:15181235:T:C	rs6740933	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	15455642	15455643	chr2:15455643:C:A	rs9287660	C	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	15470525	15470526	chr2:15470526:A:C	rs4668911	A	C	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	15637304	15637305	chr2:15637305:G:A	rs807629	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	15801086	15801087	chr2:15801087:C:A	rs115239335	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	16037817	16037818	chr2:16037818:C:A	rs16863214	C	A	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	16103069	16103070	chr2:16103070:A:C	rs4668486	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	16179740	16179741	chr2:16179741:G:A	rs73213911	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	16521130	16521131	chr2:16521131:G:C	rs4832646	G	C	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	16636398	16636399	chr2:16636399:C:T	rs186203334	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	16701820	16701821	chr2:16701821:G:A	rs1643206	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	16765453	16765454	chr2:16765454:T:G	rs16982730	T	G	t	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	16765463	16765464	chr2:16765464:T:C	rs74732525	T	C	T	Hoxa9_MA0594.1	3	1	-	8.01767889594621	5.035882468537351	ACAATGAATCA
chr2	16781475	16781476	chr2:16781476:C:T	rs79100478	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	16781485	16781486	chr2:16781486:G:T	rs76700834	G	T	T	Hoxa9_MA0594.1	6	1	-	7.738551051121958	10.97597179968702	CCAATACATCA
chr2	16933227	16933228	chr2:16933228:C:G	rs9306903	C	G	C	Hoxa9_MA0594.1	5	1	-	7.6696269796303795	9.632353768761673	ACCATGAATCT
chr2	17056542	17056543	chr2:17056543:C:T	rs77577075	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	17069082	17069083	chr2:17069083:A:G	rs871360	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	17385588	17385589	chr2:17385589:C:T	rs11688807	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	17827277	17827278	chr2:17827278:C:T	rs35895029	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	17980048	17980049	chr2:17980049:C:A	rs74567190	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	18120331	18120332	chr2:18120332:T:C	rs77224591	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	18205036	18205037	chr2:18205037:A:G	rs1349649	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	18210505	18210506	chr2:18210506:T:G	chr2:18210506:T:G	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	18276816	18276817	chr2:18276817:G:A	rs6753969	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	18357769	18357770	chr2:18357770:C:T	rs7562205	C	T	T	Hoxa9_MA0594.1	2	1	+	9.00428321168444	7.083952128557216	GTCATAAATTA
chr2	18396591	18396592	chr2:18396592:T:A	rs35814619	T	A	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	18451302	18451303	chr2:18451303:C:T	rs6760491	C	T	T	Hoxa9_MA0594.1	0	1	-	10.057390948742912	9.19220543602036	GCCATAAATCC
chr2	18451318	18451319	chr2:18451319:A:C	rs6718130	A	C	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	18479995	18479996	chr2:18479996:G:A	rs138305426	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	18526983	18526984	chr2:18526984:A:G	rs11679390	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	18613225	18613226	chr2:18613226:A:G	rs16985324	A	G	A	Hoxa9_MA0594.1	7	1	+	9.126027407570612	2.223093733867693	GCCATCTATCA
chr2	18626519	18626520	chr2:18626520:A:G	rs16985346	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	19492402	19492403	chr2:19492403:C:T	rs17758325	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	19541395	19541396	chr2:19541396:T:G	chr2:19541396:T:G	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	19755854	19755855	chr2:19755855:A:G	rs10178683	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	19819375	19819376	chr2:19819376:C:T	rs10192343	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	20027436	20027437	chr2:20027437:A:G	rs1191817	A	G	G	Hoxa9_MA0594.1	9	1	-	9.030647460072283	11.655360678656521	ACCATAAATTA
chr2	20226502	20226503	chr2:20226503:G:C	rs188091188	G	C	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	20275684	20275685	chr2:20275685:T:C	rs10856797	T	C	C	Hoxa9_MA0594.1	8	1	+	9.472796552016483	2.5995085019165938	CCCATAAATTA
chr2	20450202	20450203	chr2:20450203:A:G	rs548196012	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	20450226	20450227	chr2:20450227:G:T	rs76304010	G	T	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	20450233	20450234	chr2:20450234:C:T	rs79479426	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	20469975	20469976	chr2:20469976:A:G	rs12988451	A	G	G	Hoxa9_MA0594.1	8	1	-	7.983126471253447	1.1098384211535577	GCCATAAATAT
chr2	20592412	20592413	chr2:20592413:T:A	rs11096678	T	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	20637958	20637959	chr2:20637959:G:A	rs11680086	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	20993374	20993375	chr2:20993375:C:G	rs34776010	C	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	21092791	21092792	chr2:21092792:C:T	rs503105	C	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	21646342	21646343	chr2:21646343:T:A	rs79153592	T	A	T	Hoxa9_MA0594.1	10	1	-	8.431006454478752	6.961416567249218	TCAATAAATCA
chr2	21748883	21748884	chr2:21748884:G:T	rs11886762	G	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	22441909	22441910	chr2:22441910:G:T	rs13031296	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	22663492	22663493	chr2:22663493:A:G	rs11687600	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	23135944	23135945	chr2:23135945:C:T	rs191339008	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	23269138	23269139	chr2:23269139:A:G	rs72846017	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	23354101	23354102	chr2:23354102:G:T	rs11678409	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	23355255	23355256	chr2:23355256:C:T	rs13020985	C	T	C	Hoxa9_MA0594.1	0	1	-	7.983126471253447	7.117940958530896	GCCATAAATAT
chr2	23355256	23355257	chr2:23355257:G:A	rs2723136	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	23367848	23367849	chr2:23367849:T:C	chr2:23367849:T:C	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	23387506	23387507	chr2:23387507:A:T	rs7589523	A	T	A	Hoxa9_MA0594.1	4	1	-	9.642272946632424	2.7335181673172038	ATAATAAATCA
chr2	23486445	23486446	chr2:23486446:A:G	rs747002	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	23488693	23488694	chr2:23488694:T:C	rs10490750	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	23533421	23533422	chr2:23533422:C:G	rs186293125	C	G	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	23606274	23606275	chr2:23606275:G:A	rs583168	G	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	23891990	23891991	chr2:23891991:T:C	rs112877966	T	C	t	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	23988779	23988780	chr2:23988780:T:C	rs78465235	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	24012276	24012277	chr2:24012277:G:T	rs77959151	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	24078184	24078185	chr2:24078185:C:A	rs13415197	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	24126347	24126348	chr2:24126348:G:T	rs13418279	G	T	T	Hoxa9_MA0594.1	9	1	-	10.53382270774282	7.465992874846728	ACAATAAATCA
chr2	24924806	24924807	chr2:24924807:T:C	rs13393590	T	C	T	Hoxa9_MA0594.1	7	1	-	7.118210716167953	0.21527704246503188	CCCATGAATCC
chr2	25210124	25210125	chr2:25210125:G:C	rs150127869	G	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	25587565	25587566	chr2:25587566:C:G	rs149954692	C	G	C	Hoxa9_MA0594.1	2	1	+	8.689816197693718	2.165916209945377	CTCATGAATCA
chr2	25587577	25587578	chr2:25587578:G:T	rs114232607	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	25587586	25587587	chr2:25587587:C:A	rs145126606	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	25587590	25587591	chr2:25587591:G:C	chr2:25587591:G:C	G	C	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	25700421	25700422	chr2:25700422:A:G	rs139306516	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	25916505	25916506	chr2:25916506:C:T	rs56354374	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	25977424	25977425	chr2:25977425:G:C	rs73920218	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	25977437	25977438	chr2:25977438:G:A	rs72856507	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	26012850	26012851	chr2:26012851:G:C	chr2:26012851:G:C	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	26012854	26012855	chr2:26012855:T:G	chr2:26012855:T:G	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	26401974	26401975	chr2:26401975:C:T	rs9789650	C	T	c	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	26670991	26670992	chr2:26670992:T:C	rs114195255	T	C	T	Hoxa9_MA0594.1	4	1	+	7.118210716167953	0.20945593685273134	CCCATGAATCC
chr2	26694135	26694136	chr2:26694136:T:C	rs117559952	T	C	T	Hoxa9_MA0594.1	10	1	-	8.787894669125532	2.1511216833727627	GTCATATATCA
chr2	27532173	27532174	chr2:27532174:T:C	rs143536124	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	27796307	27796308	chr2:27796308:G:A	rs4666014	G	A	A	Hoxa9_MA0594.1	3	1	+	7.440758349612847	10.422554777021706	CCAGTCAATCA
chr2	27954329	27954330	chr2:27954330:G:T	rs572231595	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	28095012	28095013	chr2:28095013:T:G	rs72814441	T	G	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	28478251	28478252	chr2:28478252:C:A	rs2940785	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	28596798	28596799	chr2:28596799:C:G	rs144636649	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	28596806	28596807	chr2:28596807:C:A	rs75265646	C	A	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	28617476	28617477	chr2:28617477:G:T	rs11891377	G	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	28642808	28642809	chr2:28642809:G:T	rs114156553	G	T	G	Hoxa9_MA0594.1	6	1	-	7.864522907426146	11.101943655991207	ACCATCCATCA
chr2	28642818	28642819	chr2:28642819:C:T	rs112887987	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	28695344	28695345	chr2:28695345:T:C	rs137889023	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	28753099	28753100	chr2:28753100:A:C	rs192106299	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	28753176	28753177	chr2:28753177:A:G	rs116610187	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	28803414	28803415	chr2:28803415:T:C	rs138970777	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	29016211	29016212	chr2:29016212:T:G	rs12987284	T	G	T	Hoxa9_MA0594.1	1	1	+	8.364858248347181	6.197640047810615	CTCATATATCA
chr2	29253758	29253759	chr2:29253759:G:A	rs530236882	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	29363223	29363224	chr2:29363224:A:G	rs12714273	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	29370403	29370404	chr2:29370404:G:C	rs10174743	G	C	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	29463078	29463079	chr2:29463079:C:T	rs6754936	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	29463093	29463094	chr2:29463094:C:T	rs68010618	C	T	T	Hoxa9_MA0594.1	10	1	+	9.19220543602036	10.185770791426988	ACCATAAATCC
chr2	29479569	29479570	chr2:29479570:T:C	rs3885975	T	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	29482924	29482925	chr2:29482925:T:C	rs78010768	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	29502809	29502810	chr2:29502810:C:T	rs11684392	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	29782699	29782700	chr2:29782700:C:A	rs10495769	C	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	30240020	30240021	chr2:30240021:G:T	rs953338798	G	T	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	30250909	30250910	chr2:30250910:C:T	rs141523783	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	30300981	30300982	chr2:30300982:A:C	rs11127265	A	C	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	30367565	30367566	chr2:30367566:T:C	rs13386775	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	30413094	30413095	chr2:30413095:T:G	rs829603	T	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	30454933	30454934	chr2:30454934:G:A	rs62139583	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	30636585	30636586	chr2:30636586:A:C	rs10469987	A	C	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	30666255	30666256	chr2:30666256:C:T	rs1901908	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	30666294	30666295	chr2:30666295:A:G	rs1901909	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	30733223	30733224	chr2:30733224:A:G	rs12052219	A	G	A	Hoxa9_MA0594.1	10	1	+	7.864522907426146	1.227749921673377	ACCATCCATCA
chr2	30737250	30737251	chr2:30737251:A:G	rs78306826	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	31018259	31018260	chr2:31018260:C:T	rs4952026	C	T	T	Hoxa9_MA0594.1	9	1	+	8.814258917513376	6.1895456989291375	ACCATATATCA
chr2	31018273	31018274	chr2:31018274:G:A	rs7583735	G	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	31025433	31025434	chr2:31025434:T:C	rs72791285	T	C	T	Hoxa9_MA0594.1	3	1	-	6.837082112140813	3.8552856847319537	CCCATCCATCT
chr2	31204865	31204866	chr2:31204866:G:A	rs76016915	G	A	g	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	31204884	31204885	chr2:31204885:T:G	chr2:31204885:T:G	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	31205163	31205164	chr2:31205164:G:T	rs1867329	G	T	g	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	31287819	31287820	chr2:31287820:C:T	rs114294488	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	31289029	31289030	chr2:31289030:T:G	rs684967	T	G	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	32773499	32773500	chr2:32773500:C:T	rs13012691	C	T	C	Hoxa9_MA0594.1	2	1	+	12.520546191379072	10.60021510825185	GCCATAAATCA
chr2	32773500	32773501	chr2:32773501:A:G	rs2116586	A	G	A	Hoxa9_MA0594.1	3	1	+	12.520546191379072	9.538749763970214	GCCATAAATCA
chr2	33014178	33014179	chr2:33014179:C:T	rs17012452	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	33166833	33166834	chr2:33166834:G:A	rs1947444	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	33312235	33312236	chr2:33312236:A:T	rs1277992150	A	T	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	33472506	33472507	chr2:33472507:G:C	rs4280440	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	33497032	33497033	chr2:33497033:T:C	rs6543718	T	C	t	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	33519748	33519749	chr2:33519749:A:G	rs17013208	A	G	a	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	33622591	33622592	chr2:33622592:T:C	rs6717058	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	33690998	33690999	chr2:33690999:C:T	rs2197804	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	33719247	33719248	chr2:33719248:A:G	rs6716580	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	33778703	33778704	chr2:33778704:C:G	rs17013892	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	34432508	34432509	chr2:34432509:G:A	rs11900509	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	34528266	34528267	chr2:34528267:C:T	rs114188811	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	34667233	34667234	chr2:34667234:T:G	rs4670388	T	G	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	34667249	34667250	chr2:34667250:A:C	rs1527597	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	35248729	35248730	chr2:35248730:G:A	rs28567058	G	A	g	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	35449857	35449858	chr2:35449858:G:A	rs2719085	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	35835765	35835766	chr2:35835766:G:T	rs4670510	G	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	35939661	35939662	chr2:35939662:T:C	rs17017872	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	36238200	36238201	chr2:36238201:A:G	rs76921118	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	36437754	36437755	chr2:36437755:A:T	rs17018790	A	T	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	36456327	36456328	chr2:36456328:T:C	rs73924838	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	36463552	36463553	chr2:36463553:A:T	rs3770863	A	T	A	Hoxa9_MA0594.1	7	1	+	7.390499134806127	0.48756546110320714	CCCATACATCT
chr2	36508282	36508283	chr2:36508283:C:T	rs3770834	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	36549411	36549412	chr2:36549412:G:T	rs3770813	G	T	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	37232526	37232527	chr2:37232527:G:T	rs3755195	G	T	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	37303580	37303581	chr2:37303581:A:G	rs6709930	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	37318059	37318060	chr2:37318060:T:G	rs12616151	T	G	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	37366099	37366100	chr2:37366100:T:C	rs11903018	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	37387509	37387510	chr2:37387510:C:G	rs72792867	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	37449865	37449866	chr2:37449866:G:C	rs79245651	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	37469468	37469469	chr2:37469469:C:G	rs2041842	C	G	C	Hoxa9_MA0594.1	5	1	+	11.544092747935409	9.581365958804113	CCCATCAATCA
chr2	37584994	37584995	chr2:37584995:G:A	rs6761587	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	37758343	37758344	chr2:37758344:G:A	rs4629139	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	37758383	37758384	chr2:37758384:A:G	rs535656507	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	37775713	37775714	chr2:37775714:T:G	rs12996442	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	37809284	37809285	chr2:37809285:T:C	rs10865127	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	37838581	37838582	chr2:37838582:T:C	rs6745994	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	37838604	37838605	chr2:37838605:C:T	rs6731143	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	38106580	38106581	chr2:38106581:G:A	rs232532	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	38106594	38106595	chr2:38106595:T:G	rs75083269	T	G	T	Hoxa9_MA0594.1	4	1	+	12.097509770600722	5.188754991285502	CCCATAAATCA
chr2	38157001	38157002	chr2:38157002:G:A	rs232579	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	38163168	38163169	chr2:38163169:C:T	rs232572	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	38579036	38579037	chr2:38579037:T:C	rs17022941	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	38698565	38698566	chr2:38698566:G:T	rs13413726	G	T	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	39119207	39119208	chr2:39119208:A:T	rs186893736	A	T	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	39127370	39127371	chr2:39127371:G:A	rs56149931	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	39399154	39399155	chr2:39399155:C:T	rs80235443	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	39647129	39647130	chr2:39647130:A:G	rs6748628	A	G	G	Hoxa9_MA0594.1	4	1	-	8.58753084576043	1.6787760664452103	ACCATAAATAA
chr2	39660407	39660408	chr2:39660408:A:G	rs10172930	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	39908965	39908966	chr2:39908966:C:T	rs10174831	C	T	T	Hoxa9_MA0594.1	0	1	+	7.1426138406622535	4.597648495453986	CCCATAAAGCA
chr2	39920628	39920629	chr2:39920629:T:G	rs72932984	T	G	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	39990709	39990710	chr2:39990710:G:T	rs11124722	G	T	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	40208648	40208649	chr2:40208649:T:C	rs118092329	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	40265647	40265648	chr2:40265648:A:C	rs403630	A	C	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	40453008	40453009	chr2:40453009:T:G	rs2301343	T	G	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	40467345	40467346	chr2:40467346:C:T	rs4952415	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	40700700	40700701	chr2:40700701:T:C	rs1116005	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	40792580	40792581	chr2:40792581:C:T	rs62141389	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	40962400	40962401	chr2:40962401:C:T	rs57092482	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	41050323	41050324	chr2:41050324:T:C	rs34625690	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	41188135	41188136	chr2:41188136:T:C	rs1899287	T	C	T	Hoxa9_MA0594.1	6	1	-	8.58753084576043	1.769930060004774	ACCATAAATAA
chr2	41324816	41324817	chr2:41324817:C:A	rs2023545	C	A	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	41498858	41498859	chr2:41498859:T:A	rs2374285	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	41647787	41647788	chr2:41647788:C:A	rs7594318	C	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	41712214	41712215	chr2:41712215:T:A	rs34485000	T	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	41712235	41712236	chr2:41712236:T:C	rs17662122	T	C	T	Hoxa9_MA0594.1	5	1	-	9.02967993770463	6.513536125908021	CCCATAAATAA
chr2	41984518	41984519	chr2:41984519:G:A	rs12617564	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	41996880	41996881	chr2:41996881:A:G	rs12712815	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	42084426	42084427	chr2:42084427:G:A	rs73930840	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	42084435	42084436	chr2:42084436:G:T	rs10454140	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	42115281	42115282	chr2:42115282:A:C	rs13382830	A	C	A	Hoxa9_MA0594.1	0	1	+	8.043175694344246	8.485324786288448	AGCATCAATCA
chr2	42217964	42217965	chr2:42217965:A:G	rs13018498	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	42268954	42268955	chr2:42268955:T:C	rs6748415	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	42296555	42296556	chr2:42296556:C:T	rs10490553	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	42580883	42580884	chr2:42580884:C:T	rs10167442	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	42809235	42809236	chr2:42809236:G:A	rs13429831	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	42809235	42809236	chr2:42809236:G:T	chr2:42809236:G:T	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	42842835	42842836	chr2:42842836:C:A	rs4953669	C	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	42850368	42850369	chr2:42850369:T:C	rs11896488	T	C	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	42857806	42857807	chr2:42857807:C:G	rs60242474	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	42895625	42895626	chr2:42895626:G:A	rs6544612	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	42979795	42979796	chr2:42979796:T:A	rs73923067	T	A	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	43015020	43015021	chr2:43015021:T:G	rs921073	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	43042040	43042041	chr2:43042041:G:C	rs3884675	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	43257416	43257417	chr2:43257417:A:G	rs6749927	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	43349551	43349552	chr2:43349552:G:A	rs78112789	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	43521843	43521844	chr2:43521844:G:A	rs17030967	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	43613098	43613099	chr2:43613099:G:A	rs34156621	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	43710360	43710361	chr2:43710361:T:C	rs17414174	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	43763409	43763410	chr2:43763410:T:C	rs7602519	T	C	t	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	43889696	43889697	chr2:43889697:C:T	rs2955280	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	44087955	44087956	chr2:44087956:T:C	rs56220105	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	44126706	44126707	chr2:44126707:G:A	rs180925434	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	44816856	44816857	chr2:44816857:C:G	rs4953136	C	G	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	44832106	44832107	chr2:44832107:T:G	rs341577	T	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	45012034	45012035	chr2:45012035:A:G	rs1347660	A	G	G	Hoxa9_MA0594.1	7	1	+	9.581365958804113	2.678432285101193	CCCATGAATCA
chr2	45069825	45069826	chr2:45069826:C:T	rs12618367	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	45088775	45088776	chr2:45088776:C:G	rs181918608	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	45088776	45088777	chr2:45088777:C:T	rs2944659	C	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	45110634	45110635	chr2:45110635:G:A	rs13430285	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	45131780	45131781	chr2:45131781:T:G	rs1850370	T	G	T	Hoxa9_MA0594.1	7	1	-	9.064232820513286	4.079691266971787	ACAATAAATCT
chr2	45178888	45178889	chr2:45178889:T:G	rs142899899	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	45241700	45241701	chr2:45241701:G:C	rs10490352	G	C	G	Hoxa9_MA0594.1	0	1	+	7.7868232361530945	7.363786815374744	GGAATCAATCA
chr2	45275503	45275504	chr2:45275504:A:G	rs71422153	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	45275529	45275530	chr2:45275530:G:A	rs1447098024	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	45275544	45275545	chr2:45275545:G:C	rs189267111	G	C	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	45329458	45329459	chr2:45329459:G:A	rs372069822	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	45329464	45329465	chr2:45329465:T:G	rs4953227	T	G	t	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	45546371	45546372	chr2:45546372:A:G	rs17394527	A	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	45691381	45691382	chr2:45691382:A:G	rs751829729	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	45744050	45744051	chr2:45744051:G:T	rs115438970	G	T	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	45942138	45942139	chr2:45942139:G:C	rs2595195	G	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	46116595	46116596	chr2:46116596:G:T	rs12619351	G	T	T	Hoxa9_MA0594.1	10	1	-	9.080937505299248	11.544092747935409	CCCATCAATCC
chr2	46145504	46145505	chr2:46145505:G:A	rs17034641	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	46145535	46145536	chr2:46145536:A:G	rs10495930	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	46257424	46257425	chr2:46257425:T:C	rs11895082	T	C	T	Hoxa9_MA0594.1	7	1	-	8.899082879431504	1.996149205728583	AACATCAATCA
chr2	46363684	46363685	chr2:46363685:A:G	rs59435870	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	46391641	46391642	chr2:46391642:A:T	rs1530622	A	T	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	46416981	46416982	chr2:46416982:T:A	rs12986585	T	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	46416997	46416998	chr2:46416998:C:G	rs13010062	C	G	C	Hoxa9_MA0594.1	5	1	+	11.075579407603364	9.112852618472068	GTCATCAATCA
chr2	46451580	46451581	chr2:46451581:C:T	rs6723195	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	46461815	46461816	chr2:46461816:A:T	rs57720200	A	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	46505265	46505266	chr2:46505266:G:A	rs11125080	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	46651211	46651212	chr2:46651212:C:G	rs13406427	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	46749232	46749233	chr2:46749233:C:G	rs144434901	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	46749236	46749237	chr2:46749237:T:A	rs17822668	T	A	A	Hoxa9_MA0594.1	1	1	+	8.159236377169226	6.847925361719915	GTCATAAAACA
chr2	46848322	46848323	chr2:46848323:C:G	rs147016071	C	G	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	46887758	46887759	chr2:46887759:C:T	rs17035845	C	T	c	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	46922131	46922132	chr2:46922132:G:T	rs11684448	G	T	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	46922162	46922163	chr2:46922163:T:G	rs114839774	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	47086908	47086909	chr2:47086909:T:C	rs2280647	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	47086912	47086913	chr2:47086913:T:C	rs1474394	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	47258278	47258279	chr2:47258279:A:C	rs6755555	A	C	A	Hoxa9_MA0594.1	3	1	+	7.6696269796303795	3.7414125551511375	ACCATGAATCT
chr2	47288123	47288124	chr2:47288124:G:T	rs13412502	G	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	47299029	47299030	chr2:47299030:T:C	rs77145257	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	47342486	47342487	chr2:47342487:G:A	rs140093934	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	47536755	47536756	chr2:47536756:T:C	rs748780	T	C	C	Hoxa9_MA0594.1	3	1	-	9.552544425392455	6.570747997983595	TCCATAAATCA
chr2	47682445	47682446	chr2:47682446:C:T	rs2037230	C	T	C	Hoxa9_MA0594.1	0	1	-	9.130625221022317	8.265439708299766	GCTATAAATCT
chr2	48120744	48120745	chr2:48120745:G:A	rs76592793	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	48235227	48235228	chr2:48235228:A:G	rs79629009	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	48249407	48249408	chr2:48249408:C:T	rs79624851	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	48347901	48347902	chr2:48347902:T:C	rs74356315	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	48734501	48734502	chr2:48734502:A:C	rs6751138	A	C	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	48734522	48734523	chr2:48734523:A:T	rs11674172	A	T	A	Hoxa9_MA0594.1	8	1	-	7.738551051121958	4.2687909980225065	CCAATACATCA
chr2	49720249	49720250	chr2:49720250:C:T	rs1401323	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	50083531	50083532	chr2:50083532:T:C	rs555872950	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	50103347	50103348	chr2:50103348:G:A	rs10169371	G	A	A	Hoxa9_MA0594.1	9	1	-	8.848095527589834	6.223382309005595	GACATAAATCT
chr2	50103371	50103372	chr2:50103372:T:C	rs10181708	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	50914395	50914396	chr2:50914396:G:A	rs62142976	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	51036982	51036983	chr2:51036983:G:A	rs10173781	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	51150942	51150943	chr2:51150943:C:T	rs112002894	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	51606945	51606946	chr2:51606946:A:T	rs11125368	A	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	51995256	51995257	chr2:51995257:C:T	rs2355181	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	52061770	52061771	chr2:52061771:G:A	rs7602118	G	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	52703676	52703677	chr2:52703677:C:A	rs10183343	C	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	52703718	52703719	chr2:52703719:C:T	rs6715803	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	53379060	53379061	chr2:53379061:A:G	rs75252230	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	53463093	53463094	chr2:53463094:G:C	rs11125499	G	C	C	Hoxa9_MA0594.1	9	1	-	7.605819354503911	0.8074883928030643	GTCATCAAACA
chr2	53568756	53568757	chr2:53568757:C:G	rs139020407	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	53863718	53863719	chr2:53863719:C:T	rs805376	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	54336226	54336227	chr2:54336227:A:G	rs9808395	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	54546703	54546704	chr2:54546704:T:A	rs9309255	T	A	T	Hoxa9_MA0594.1	10	1	-	8.581246790906087	7.111656903676554	CTCATAAATTA
chr2	54568791	54568792	chr2:54568792:A:G	rs7602992	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	54978810	54978811	chr2:54978811:A:G	rs6739210	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	55100413	55100414	chr2:55100414:G:T	rs12464877	G	T	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	55772757	55772758	chr2:55772758:G:T	rs4671258	G	T	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	55842792	55842793	chr2:55842793:G:A	rs183293208	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	56266627	56266628	chr2:56266628:A:G	rs13025817	A	G	A	Hoxa9_MA0594.1	4	1	-	9.894648994041017	2.9858942147257963	CACATAAATCA
chr2	56313624	56313625	chr2:56313625:A:T	rs72803036	A	T	A	Hoxa9_MA0594.1	3	1	+	10.084422038576625	3.2416853959689362	CTAATAAATCA
chr2	57189705	57189706	chr2:57189706:T:C	rs13030956	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	57550021	57550022	chr2:57550022:T:A	rs17048908	T	A	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	57602747	57602748	chr2:57602748:T:A	rs150968678	T	A	T	Hoxa9_MA0594.1	3	1	-	9.7350295955293	2.8922929529216113	ACTATAAATCA
chr2	57820127	57820128	chr2:57820128:C:A	rs2717052	C	A	A	Hoxa9_MA0594.1	2	1	+	9.894648994041017	8.773111023127315	CACATAAATCA
chr2	57856284	57856285	chr2:57856285:C:T	rs2953442	C	T	C	Hoxa9_MA0594.1	5	1	-	8.53481249235293	11.050956304149539	GCCATGAATCT
chr2	58138214	58138215	chr2:58138215:A:C	rs716758	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	60118326	60118327	chr2:60118327:A:C	rs979687	A	C	A	Hoxa9_MA0594.1	5	1	+	8.93585297782921	8.382435955163896	GCAATAAATCC
chr2	60438494	60438495	chr2:60438495:T:G	rs71541916	T	G	T	Hoxa9_MA0594.1	6	1	-	10.422554777021706	7.185134028456644	CCAATCAATCA
chr2	60479902	60479903	chr2:60479903:C:A	rs12992182	C	A	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	60511850	60511851	chr2:60511851:A:G	rs6545818	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	60719544	60719545	chr2:60719545:G:A	rs56949301	G	A	-	Hoxa9_MA0594.1	5	1	+	8.01767889594621	10.53382270774282	ACAATGAATCA
chr2	60883608	60883609	chr2:60883609:T:C	rs111914554	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	60885098	60885099	chr2:60885099:G:A	rs12477512	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	60885129	60885130	chr2:60885130:A:G	rs77262870	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	60887190	60887191	chr2:60887191:T:C	rs115022610	T	C	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	61208367	61208368	chr2:61208368:T:C	rs146970285	T	C	T	Hoxa9_MA0594.1	7	1	-	8.294678504924521	1.3917448312216	GACATCAATCT
chr2	61809474	61809475	chr2:61809475:C:T	rs11688210	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	61962865	61962866	chr2:61962866:C:A	rs7579874	C	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	61969346	61969347	chr2:61969347:A:T	rs13011941	A	T	A	Hoxa9_MA0594.1	6	1	+	9.461778229732111	6.6206764685889645	GGCATAAATCA
chr2	62186852	62186853	chr2:62186853:C:T	rs1449947	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	62204997	62204998	chr2:62204998:G:A	rs7605321	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	62374754	62374755	chr2:62374755:G:A	rs59611681	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	62569735	62569736	chr2:62569736:T:C	rs17517026	T	C	T	Hoxa9_MA0594.1	3	1	-	8.477230437406968	5.49543400999811	ACCATCAATTA
chr2	63382921	63382922	chr2:63382922:A:G	rs76458393	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	63504469	63504470	chr2:63504470:A:G	rs6735907	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	64543390	64543391	chr2:64543391:A:G	rs12104856	A	G	A	Hoxa9_MA0594.1	3	1	+	8.134870038543875	5.153073611135015	CCAATATATCA
chr2	64586787	64586788	chr2:64586788:A:T	rs3821139	A	T	a	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	64627187	64627188	chr2:64627188:T:C	rs17029175	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	64730237	64730238	chr2:64730238:T:C	rs10185402	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	64946650	64946651	chr2:64946651:G:T	rs138024569	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	64985043	64985044	chr2:64985044:A:G	rs6546118	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	65390116	65390117	chr2:65390117:T:C	rs11683330	T	C	T	Hoxa9_MA0594.1	7	1	-	7.632183602891756	0.7292499291888359	ACCATCAAACA
chr2	65656355	65656356	chr2:65656356:G:C	rs148133184	G	C	G	Hoxa9_MA0594.1	0	1	-	10.627919883371188	11.050956304149539	CCCATAAATCT
chr2	65708022	65708023	chr2:65708023:C:T	rs17030670	C	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	65858896	65858897	chr2:65858897:C:T	rs66954288	C	T	c	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	66080324	66080325	chr2:66080325:A:C	rs7580714	A	C	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	66085088	66085089	chr2:66085089:G:A	rs1105244	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	66292744	66292745	chr2:66292745:A:G	rs11885650	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	66459463	66459464	chr2:66459464:T:C	rs6727704	T	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	66527820	66527821	chr2:66527821:A:G	rs72824804	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	66569475	66569476	chr2:66569476:G:A	rs2066927	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	66569514	66569515	chr2:66569515:G:A	rs546899013	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	66889898	66889899	chr2:66889899:C:T	rs12614695	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	66960234	66960235	chr2:66960235:C:T	rs192664160	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	67037831	67037832	chr2:67037832:G:T	rs2098390	G	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	67079975	67079976	chr2:67079976:C:G	rs1921273	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	67079979	67079980	chr2:67079980:A:T	rs1921274	A	T	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	67130809	67130810	chr2:67130810:G:T	rs115044416	G	T	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	67195470	67195471	chr2:67195471:C:T	rs2091717	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	67393424	67393425	chr2:67393425:C:T	rs760298509	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	67517260	67517261	chr2:67517261:C:A	rs13405060	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	67577246	67577247	chr2:67577247:C:T	rs140632103	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	67614722	67614723	chr2:67614723:A:G	rs4671192	A	G	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	67650943	67650944	chr2:67650944:G:A	rs896938916	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	67650975	67650976	chr2:67650976:T:C	rs1430779	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	67694617	67694618	chr2:67694618:C:T	rs17034142	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	67896337	67896338	chr2:67896338:C:T	rs13433075	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	68134773	68134774	chr2:68134774:A:C	rs200069460	A	C	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	68212035	68212036	chr2:68212036:C:A	rs4296409	C	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	68292411	68292412	chr2:68292412:A:G	rs10496161	A	G	A	Hoxa9_MA0594.1	2	1	+	8.01767889594621	2.615316879111573	ACAATGAATCA
chr2	68302549	68302550	chr2:68302550:A:G	rs6746740	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	68334185	68334186	chr2:68334186:A:G	rs4671902	A	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	68730777	68730778	chr2:68730778:C:A	rs13393229	C	A	C	Hoxa9_MA0594.1	9	1	+	9.283125442814011	6.21529560991792	GCCATACATCA
chr2	68784905	68784906	chr2:68784906:A:G	rs113688946	A	G	G	Hoxa9_MA0594.1	4	1	-	9.08885592396711	2.180101144651889	ATAATCAATCA
chr2	69132679	69132680	chr2:69132680:T:A	rs35461269	T	A	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	69311085	69311086	chr2:69311086:A:G	rs10185891	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	69359160	69359161	chr2:69359161:A:C	rs6546505	A	C	C	Hoxa9_MA0594.1	8	1	-	8.450866189019125	3.4959702590806554	GTCATCAATTA
chr2	69429221	69429222	chr2:69429222:T:C	rs59129812	T	C	T	Hoxa9_MA0594.1	3	1	-	8.774295001881132	5.7924985744722735	GCAATAAATTA
chr2	69701792	69701793	chr2:69701793:C:T	rs6724142	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	69721132	69721133	chr2:69721133:C:G	rs6761399	C	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	69954260	69954261	chr2:69954261:A:C	rs72910651	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	70069148	70069149	chr2:70069149:T:G	rs75263659	T	G	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	70117370	70117371	chr2:70117371:A:T	rs58430931	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	70149441	70149442	chr2:70149442:C:A	rs4338986	C	A	c	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	70372023	70372024	chr2:70372024:T:C	rs72842512	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	70386396	70386397	chr2:70386397:G:A	rs578103885	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	70462111	70462112	chr2:70462112:G:A	rs3771518	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	70533358	70533359	chr2:70533359:G:T	rs13034560	G	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	70659358	70659359	chr2:70659359:A:G	rs72899625	A	G	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	70743967	70743968	chr2:70743968:T:C	rs11126294	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	70946560	70946561	chr2:70946561:A:G	rs2239486	A	G	G	Hoxa9_MA0594.1	6	1	+	9.632353768761673	2.814752983006017	ACCATCAATCT
chr2	70971854	70971855	chr2:70971855:G:A	rs4852734	G	A	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	70986816	70986817	chr2:70986817:A:G	rs57263588	A	G	A	Hoxa9_MA0594.1	8	1	-	6.837082112140813	-0.036205937959076506	CCCATCCATCT
chr2	71074317	71074318	chr2:71074318:G:A	rs10179531	G	A	.	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	71467980	71467981	chr2:71467981:G:T	rs6738477	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	71539491	71539492	chr2:71539492:T:A	rs78115186	T	A	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	71551901	71551902	chr2:71551902:G:A	rs7582130	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	71560321	71560322	chr2:71560322:C:T	rs116546110	C	T	C	Hoxa9_MA0594.1	0	1	+	9.03874180895376	6.493776463745492	CGCATAAATCA
chr2	71743072	71743073	chr2:71743073:C:T	rs919387148	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	71749755	71749756	chr2:71749756:G:T	chr2:71749756:G:T	G	T	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	71749963	71749964	chr2:71749964:G:C	rs1816221	G	C	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	71803340	71803341	chr2:71803341:A:G	rs6726307	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	71886908	71886909	chr2:71886909:A:G	rs60579855	A	G	a	Hoxa9_MA0594.1	5	1	+	7.786818122228043	5.270674310431433	CCCATATATCT
chr2	72042320	72042321	chr2:72042321:T:C	rs4852281	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	72042333	72042334	chr2:72042334:C:G	rs79718724	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	72042335	72042336	chr2:72042336:G:C	rs4852840	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	72570551	72570552	chr2:72570552:A:G	rs140354881	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	72669372	72669373	chr2:72669373:C:T	rs180872867	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	72928384	72928385	chr2:72928385:G:A	rs113380917	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	72992792	72992793	chr2:72992793:C:T	rs893258	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	73007827	73007828	chr2:73007828:T:C	rs56996879	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	73228618	73228619	chr2:73228619:C:T	rs2288631	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	73344288	73344289	chr2:73344289:G:A	rs7604588	G	A	A	Hoxa9_MA0594.1	9	1	-	7.1426138406622535	4.517900622078015	CCCATAAAGCA
chr2	73631079	73631080	chr2:73631080:A:G	rs149166184	A	G	a	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	73759472	73759473	chr2:73759473:C:A	rs57665766	C	A	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	73851586	73851587	chr2:73851587:G:T	rs35283510	G	T	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	73925051	73925052	chr2:73925052:G:C	rs831524	G	C	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	74192445	74192446	chr2:74192446:G:T	rs1095967	G	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	74506925	74506926	chr2:74506926:T:C	rs79220597	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	74531180	74531181	chr2:74531181:A:G	rs72907273	A	G	A	Hoxa9_MA0594.1	6	1	-	8.814258917513376	8.41793993009146	ACCATATATCA
chr2	74741112	74741113	chr2:74741113:C:A	rs205621	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	74835458	74835459	chr2:74835459:C:T	rs192344626	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	75100554	75100555	chr2:75100555:G:A	rs17010738	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	75539475	75539476	chr2:75539476:G:A	rs867172	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	75712610	75712611	chr2:75712611:C:T	rs7566936	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	75925809	75925810	chr2:75925810:A:G	rs72922190	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	76017821	76017822	chr2:76017822:A:G	rs427171	A	G	G	Hoxa9_MA0594.1	3	1	+	9.634354527964561	6.652558100555703	CCCATAAATCC
chr2	76080218	76080219	chr2:76080219:T:C	rs406952	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	76130563	76130564	chr2:76130564:C:T	rs730150	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	76424244	76424245	chr2:76424245:T:C	rs13032190	T	C	C	Hoxa9_MA0594.1	4	1	+	9.00428321168444	2.0955284323692185	GTCATAAATTA
chr2	76500538	76500539	chr2:76500539:T:C	rs72810811	T	C	T	Hoxa9_MA0594.1	7	1	-	9.45271635848298	2.5497826847800615	GCCATAAATAA
chr2	76968698	76968699	chr2:76968699:T:C	rs10198983	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	76998869	76998870	chr2:76998870:C:T	rs59946045	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	78363416	78363417	chr2:78363417:A:G	rs7606174	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	78780428	78780429	chr2:78780429:A:T	rs78912331	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	78920801	78920802	chr2:78920802:G:A	rs72814617	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	78925795	78925796	chr2:78925796:G:A	rs2861680	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	78948138	78948139	chr2:78948139:T:A	rs1597152	T	A	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	79012275	79012276	chr2:79012276:C:T	rs396909	C	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	79012286	79012287	chr2:79012287:A:C	rs405254	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	79020232	79020233	chr2:79020233:G:A	rs10201092	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	79178435	79178436	chr2:79178436:T:C	rs986389	T	C	T	Hoxa9_MA0594.1	1	1	+	10.159406543039145	11.050956304149539	GTCATAAATCT
chr2	79178461	79178462	chr2:79178462:G:A	rs12467611	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	79178485	79178486	chr2:79178486:G:A	rs75868666	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	79246969	79246970	chr2:79246970:A:T	rs1583370	A	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	79903837	79903838	chr2:79903838:T:C	rs10865447	T	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	80072981	80072982	chr2:80072982:G:C	rs1471761	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	80248322	80248323	chr2:80248323:C:G	rs77980160	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	80248358	80248359	chr2:80248359:G:C	rs417695	G	C	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	80581901	80581902	chr2:80581902:C:G	rs17019401	C	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	81152343	81152344	chr2:81152344:G:A	rs7562802	G	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	81244557	81244558	chr2:81244558:C:T	rs4349373	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	81262496	81262497	chr2:81262497:C:A	rs11126801	C	A	A	Hoxa9_MA0594.1	9	1	+	9.196147443905666	6.128317611009574	GAAATAAATCA
chr2	81364034	81364035	chr2:81364035:C:A	rs6547366	C	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	81364038	81364039	chr2:81364039:A:C	rs6547367	A	C	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	81423323	81423324	chr2:81423324:T:C	rs1369706	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	81515966	81515967	chr2:81515967:C:T	rs2164415	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	81703682	81703683	chr2:81703683:C:T	rs4555368	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	83055718	83055719	chr2:83055719:A:C	rs539633951	A	C	A	Hoxa9_MA0594.1	3	1	+	9.196147443905666	5.267933019426424	GAAATAAATCA
chr2	83177540	83177541	chr2:83177541:G:C	rs62148981	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	83209994	83209995	chr2:83209995:A:C	rs6740420	A	C	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	83232984	83232985	chr2:83232985:G:A	rs6547467	G	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	83266174	83266175	chr2:83266175:T:C	rs75249466	T	C	T	Hoxa9_MA0594.1	7	1	-	9.764268392154055	2.861334718451134	GACATCAATCA
chr2	83283101	83283102	chr2:83283102:T:G	rs6547475	T	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	83283108	83283109	chr2:83283109:C:A	rs6547476	C	A	C	Hoxa9_MA0594.1	0	1	+	9.256408009457576	8.814258917513376	CCCATATATCA
chr2	83368922	83368923	chr2:83368923:G:A	rs116837964	G	A	a	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	83826981	83826982	chr2:83826982:C:G	rs13415350	C	G	G	Hoxa9_MA0594.1	1	1	+	8.53481249235293	5.476044530705968	GCCATGAATCT
chr2	83866482	83866483	chr2:83866483:G:A	rs76043375	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	84329968	84329969	chr2:84329969:C:G	chr2:84329969:C:G	C	G	C	Hoxa9_MA0594.1	2	1	+	9.736370122260793	3.212470134512453	CTCATAAATCT
chr2	84339135	84339136	chr2:84339136:G:A	rs80182435	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	84339137	84339138	chr2:84339138:T:C	rs4281919	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	84716835	84716836	chr2:84716836:A:C	rs116551204	A	C	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	85255879	85255880	chr2:85255880:G:A	rs2043229	G	A	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	85365862	85365863	chr2:85365863:G:A	rs116141693	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	85411199	85411200	chr2:85411200:A:G	rs11682055	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	85412910	85412911	chr2:85412911:A:T	rs72831569	A	T	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	85471136	85471137	chr2:85471137:G:T	rs142682640	G	T	G	Hoxa9_MA0594.1	1	1	-	8.306671999370346	6.103811222810641	CCCATCCATCA
chr2	85511754	85511755	chr2:85511755:G:T	rs2044476	G	T	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	85736014	85736015	chr2:85736015:G:A	rs146819276	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	85765579	85765580	chr2:85765580:C:T	rs115153832	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	85869686	85869687	chr2:85869687:C:A	rs4832015	C	A	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	85938641	85938642	chr2:85938642:A:G	rs10167259	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	85957742	85957743	chr2:85957743:G:T	rs13397189	G	T	T	Hoxa9_MA0594.1	9	1	-	9.642272946632424	6.574443113736333	ATAATAAATCA
chr2	86057162	86057163	chr2:86057163:G:A	rs311582	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	86078690	86078691	chr2:86078691:T:C	rs929916	T	C	C	Hoxa9_MA0594.1	3	1	-	9.45271635848298	6.470919931074123	GCCATAAATAA
chr2	86191596	86191597	chr2:86191597:G:A	rs145928316	G	A	g	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	86233437	86233438	chr2:86233438:A:T	rs1007502	A	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	86706344	86706345	chr2:86706345:C:T	rs140431909	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	86717556	86717557	chr2:86717557:C:A	rs150217132	C	A	c	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	87685209	87685210	chr2:87685210:G:C	rs1710495	G	C	.	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	88069078	88069079	chr2:88069079:A:G	rs988731	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	88501892	88501893	chr2:88501893:G:C	rs10179293	G	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	88716329	88716330	chr2:88716330:C:T	rs6746372	C	T	N	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	88802080	88802081	chr2:88802081:T:C	rs2365118	T	C	N	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	88871839	88871840	chr2:88871840:T:G	rs232207	T	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	88932660	88932661	chr2:88932661:T:A	rs4972016	T	A	.	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	89636256	89636257	chr2:89636257:T:C	rs71236181	T	C	.	Hoxa9_MA0594.1	6	1	-	8.01767889594621	1.2000781101905535	ACAATGAATCA
chr2	89761319	89761320	chr2:89761320:A:T	rs1321476539	A	T	.	Hoxa9_MA0594.1	7	1	+	8.99912740272714	2.0961937290242205	TCCATCAATCA
chr2	89762434	89762435	chr2:89762435:G:T	rs1264219803	G	T	.	Hoxa9_MA0594.1	1	1	-	7.565650261440604	5.362789484880899	GCCATAAAGCA
chr2	89762452	89762453	chr2:89762453:G:T	rs1468216971	G	T	.	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	89765731	89765732	chr2:89765732:A:G	rs1174571748	A	G	.	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	95022970	95022971	chr2:95022971:C:T	rs142328096	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	95289931	95289932	chr2:95289932:G:T	rs2278067	G	T	G	Hoxa9_MA0594.1	0	1	-	8.51281655705086	8.07066746510666	CCAATAAATCC
chr2	96111419	96111420	chr2:96111420:T:G	rs2312955	T	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	96259737	96259738	chr2:96259738:C:A	rs75301566	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	96510896	96510897	chr2:96510897:C:T	rs2579503	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	96740616	96740617	chr2:96740617:A:C	rs57582887	A	C	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	96871115	96871116	chr2:96871116:C:T	rs74562642	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	96960614	96960615	chr2:96960615:G:A	rs181004962	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	96960647	96960648	chr2:96960648:T:G	rs549442483	T	G	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	97553080	97553081	chr2:97553081:C:G	rs9677087	C	G	c	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	97553119	97553120	chr2:97553120:G:T	rs9679293	G	T	t	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	97688648	97688649	chr2:97688649:G:A	rs17028435	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	97701307	97701308	chr2:97701308:C:A	rs11894651	C	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	97714678	97714679	chr2:97714679:C:T	rs142960016	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	98149561	98149562	chr2:98149562:A:G	rs963691394	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	98187850	98187851	chr2:98187851:G:A	rs1466156	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	98199987	98199988	chr2:98199988:C:A	rs62154930	C	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	98212773	98212774	chr2:98212774:A:G	rs2122756	A	G	G	Hoxa9_MA0594.1	1	1	-	10.159406543039145	11.050956304149539	GTCATAAATCT
chr2	98334508	98334509	chr2:98334509:C:T	rs62155356	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	98846247	98846248	chr2:98846248:C:T	rs12712036	C	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	99389410	99389411	chr2:99389411:C:T	rs17022629	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	99609285	99609286	chr2:99609286:G:A	rs34112064	G	A	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	99609290	99609291	chr2:99609291:C:T	rs11895560	C	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	99673233	99673234	chr2:99673234:G:A	rs4384839	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	99882121	99882122	chr2:99882122:C:A	rs541419504	C	A	C	Hoxa9_MA0594.1	0	1	+	12.097509770600722	11.655360678656521	CCCATAAATCA
chr2	99960344	99960345	chr2:99960345:T:C	rs11887597	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	99960354	99960355	chr2:99960355:C:T	rs62149271	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	99960379	99960380	chr2:99960380:C:T	rs188821292	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	100037003	100037004	chr2:100037004:T:G	rs1006261680	T	G	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	100278339	100278340	chr2:100278340:C:G	rs4851283	C	G	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	100365681	100365682	chr2:100365682:A:T	rs6542940	A	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	100679661	100679662	chr2:100679662:A:G	rs870321	A	G	G	Hoxa9_MA0594.1	4	1	-	7.615878323456167	0.7071235441409471	CCCCTCAATCA
chr2	100778909	100778910	chr2:100778910:C:T	rs140344239	C	T	C	Hoxa9_MA0594.1	5	1	+	9.60598952037383	7.185850513044142	GTCATCAATCT
chr2	100931790	100931791	chr2:100931791:A:G	rs112682528	A	G	A	Hoxa9_MA0594.1	10	1	+	7.536004637837573	0.8992316520848043	GCCATAACTCA
chr2	100972732	100972733	chr2:100972733:T:C	rs79473880	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	101431148	101431149	chr2:101431149:A:T	rs62152841	A	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	101431157	101431158	chr2:101431158:A:G	rs2037080	A	G	a	Hoxa9_MA0594.1	6	1	+	7.747238652244652	0.929637866488995	ATCATCAATCC
chr2	101773218	101773219	chr2:101773219:A:G	rs7569169	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	102046358	102046359	chr2:102046359:A:G	rs62154653	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	102069969	102069970	chr2:102069970:G:A	rs6715090	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	102482333	102482334	chr2:102482334:C:T	rs6737325	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	102708115	102708116	chr2:102708116:T:C	rs17833353	T	C	T	Hoxa9_MA0594.1	7	1	-	9.126027407570612	2.223093733867693	GCCATCTATCA
chr2	102848908	102848909	chr2:102848909:C:G	rs138112614	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	103401604	103401605	chr2:103401605:C:T	rs7582966	C	T	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	103964044	103964045	chr2:103964045:C:T	rs12613775	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	104405289	104405290	chr2:104405290:C:T	rs2139397	C	T	T	Hoxa9_MA0594.1	5	1	+	9.342415950129519	6.922276942799832	GCCATCAATTA
chr2	104416475	104416476	chr2:104416476:G:T	rs542873003	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	104690714	104690715	chr2:104690715:C:T	rs7571677	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	104834628	104834629	chr2:104834629:T:C	rs78309028	T	C	T	Hoxa9_MA0594.1	0	1	-	8.043175694344246	8.908361207066799	AGCATCAATCA
chr2	105112807	105112808	chr2:105112808:T:C	rs73945047	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	105184460	105184461	chr2:105184461:C:T	rs2576798	C	T	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	105184494	105184495	chr2:105184495:G:A	rs6736495	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	105274174	105274175	chr2:105274175:T:C	rs3816133	T	C	T	Hoxa9_MA0594.1	7	1	-	8.260841894848062	1.3579082211451419	ACCATCTATCA
chr2	105387274	105387275	chr2:105387275:C:T	rs549637697	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	105419122	105419123	chr2:105419123:C:T	rs1914748	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	105475759	105475760	chr2:105475760:T:G	rs1401209	T	G	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	105770407	105770408	chr2:105770408:G:T	rs1367404	G	T	G	Hoxa9_MA0594.1	9	1	-	8.425059106811483	5.357229273915392	CACATAAATCT
chr2	105926365	105926366	chr2:105926366:T:C	rs7600345	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	105999369	105999370	chr2:105999370:A:G	rs1669536	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	106065860	106065861	chr2:106065861:A:G	rs17032271	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	106065883	106065884	chr2:106065884:G:T	rs73949223	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	106201631	106201632	chr2:106201632:G:T	rs12468463	G	T	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	106841819	106841820	chr2:106841820:G:C	rs1868257	G	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	106876551	106876552	chr2:106876552:C:T	rs66511537	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	107002880	107002881	chr2:107002881:T:C	rs62152194	T	C	T	Hoxa9_MA0594.1	8	1	+	9.037868572125442	2.164580522025551	GTAATAAATCT
chr2	107132419	107132420	chr2:107132420:C:T	rs6749292	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	107178132	107178133	chr2:107178133:G:A	rs10496411	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	107419975	107419976	chr2:107419976:G:C	rs266246	G	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	107429898	107429899	chr2:107429899:A:C	rs7599078	A	C	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	107664804	107664805	chr2:107664805:G:C	rs10193441	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	107927151	107927152	chr2:107927152:G:T	rs13022589	G	T	.	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	108450075	108450076	chr2:108450076:T:C	rs76428482	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	108640822	108640823	chr2:108640823:A:G	rs528177179	A	G	a	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	108652855	108652856	chr2:108652856:C:A	rs111580721	C	A	C	Hoxa9_MA0594.1	9	1	+	6.837082112140813	3.769252279244721	CCCATCCATCT
chr2	109032258	109032259	chr2:109032259:G:A	rs4676051	G	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	109069255	109069256	chr2:109069256:T:A	rs11695201	T	A	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	109089229	109089230	chr2:109089230:A:C	rs117879382	A	C	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	109132846	109132847	chr2:109132847:G:A	rs6740122	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	109191428	109191429	chr2:109191429:G:A	rs1430306	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	109240029	109240030	chr2:109240030:T:C	rs6760953	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	109322289	109322290	chr2:109322290:C:A	rs1053900369	C	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	109331296	109331297	chr2:109331297:A:G	rs142954029	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	109447204	109447205	chr2:109447205:C:T	rs34554071	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	109497569	109497570	chr2:109497570:G:A	rs76367730	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	110104617	110104618	chr2:110104618:C:T	rs116052344	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	110184572	110184573	chr2:110184573:G:A	rs881302	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	110840787	110840788	chr2:110840788:T:C	rs999643	T	C	C	Hoxa9_MA0594.1	10	1	-	8.773111023127315	2.1363380373745455	CAAATAAATCA
chr2	110840788	110840789	chr2:110840789:G:A	rs999642	G	A	A	Hoxa9_MA0594.1	9	1	-	8.773111023127315	6.148397804543076	CAAATAAATCA
chr2	110974327	110974328	chr2:110974328:C:T	rs59275547	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	110979697	110979698	chr2:110979698:G:A	rs17041670	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	111068708	111068709	chr2:111068709:C:T	rs35812219	C	T	c	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	111068709	111068710	chr2:111068710:G:C	rs17041844	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	111068714	111068715	chr2:111068715:G:C	rs17483962	G	C	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	111227374	111227375	chr2:111227375:G:C	rs59825798	G	C	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	111416298	111416299	chr2:111416299:C:T	rs62160682	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	111419045	111419046	chr2:111419046:C:G	rs143496984	C	G	C	Hoxa9_MA0594.1	0	1	-	9.196147443905666	8.773111023127315	GAAATAAATCA
chr2	111496273	111496274	chr2:111496274:T:C	rs1345203	T	C	T	Hoxa9_MA0594.1	6	1	-	8.18560062555707	1.3679998398014137	ACCATAAAACA
chr2	111496297	111496298	chr2:111496298:G:A	rs148535927	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	111708687	111708688	chr2:111708688:T:G	rs12373588	T	G	G	Hoxa9_MA0594.1	4	1	+	11.205960009490326	4.2972052301751065	CTCATAAATCA
chr2	111735408	111735409	chr2:111735409:T:C	rs11684402	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	111912042	111912043	chr2:111912043:C:A	rs11123035	C	A	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	112048936	112048937	chr2:112048937:A:G	chr2:112048937:A:G	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	112048943	112048944	chr2:112048944:T:C	rs146459022	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	112275468	112275469	chr2:112275469:C:T	chr2:112275469:C:T	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	112481375	112481376	chr2:112481376:C:T	chr2:112481376:C:T	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	112705518	112705519	chr2:112705519:T:A	rs4849107	T	A	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	112945915	112945916	chr2:112945916:C:A	rs7597623	C	A	c	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	112959459	112959460	chr2:112959460:C:T	rs77576047	C	T	c	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	112992892	112992893	chr2:112992893:A:G	rs1446516	A	G	a	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	113081503	113081504	chr2:113081504:C:T	rs4989179	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	113081506	113081507	chr2:113081507:G:A	rs4989178	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	113232664	113232665	chr2:113232665:T:C	rs2166421	T	C	T	Hoxa9_MA0594.1	7	1	-	7.8637947703911975	0.9608610966882778	GCAGTCAATCA
chr2	113232683	113232684	chr2:113232684:G:A	rs7421852	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	114128452	114128453	chr2:114128453:A:G	rs4849306	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	114183869	114183870	chr2:114183870:C:A	rs62171756	C	A	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	115133921	115133922	chr2:115133922:T:C	rs72837522	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	115309407	115309408	chr2:115309408:G:A	rs975453	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	115396847	115396848	chr2:115396848:C:T	rs2421101	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	115558886	115558887	chr2:115558887:A:T	rs17044696	A	T	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	116490833	116490834	chr2:116490834:C:T	rs75061572	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	116492913	116492914	chr2:116492914:G:A	rs1907544	G	A	G	Hoxa9_MA0594.1	9	1	-	8.484451549460127	5.859738330875889	GTAATCAATCT
chr2	116936960	116936961	chr2:116936961:C:T	rs6735778	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	117514768	117514769	chr2:117514769:T:C	rs11679441	T	C	T	Hoxa9_MA0594.1	3	1	-	11.628996430268678	8.647200002859819	GTCATAAATCA
chr2	117612901	117612902	chr2:117612902:G:A	rs11676498	G	A	G	Hoxa9_MA0594.1	0	1	+	9.45271635848298	8.58753084576043	GCCATAAATAA
chr2	117770674	117770675	chr2:117770675:G:A	rs78460409	G	A	G	Hoxa9_MA0594.1	0	1	+	9.764268392154055	8.899082879431504	GACATCAATCA
chr2	118032472	118032473	chr2:118032473:G:C	rs72838060	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	118185849	118185850	chr2:118185850:T:C	rs72952780	T	C	T	Hoxa9_MA0594.1	3	1	-	7.738551051121958	4.7567546237131	CCAATACATCA
chr2	118568993	118568994	chr2:118568994:T:C	chr2:118568994:T:C	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	119120287	119120288	chr2:119120288:T:C	rs79252097	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	119184906	119184907	chr2:119184907:A:C	rs116462473	A	C	A	Hoxa9_MA0594.1	3	1	+	7.968539260925265	4.0403248364460245	CTCATACATCA
chr2	119184909	119184910	chr2:119184910:C:T	rs7584874	C	T	C	Hoxa9_MA0594.1	6	1	+	7.968539260925265	8.364858248347181	CTCATACATCA
chr2	119294921	119294922	chr2:119294922:T:C	rs11677146	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	119318380	119318381	chr2:119318381:A:G	rs67218267	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	119486142	119486143	chr2:119486143:G:A	rs56126845	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	119579517	119579518	chr2:119579518:A:G	rs17049444	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	119608718	119608719	chr2:119608719:T:C	rs1521915	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	119761719	119761720	chr2:119761720:A:G	rs80255266	A	G	A	Hoxa9_MA0594.1	1	1	-	9.285628926363104	10.1771786874735	CTTATAAATCA
chr2	119836968	119836969	chr2:119836969:C:T	rs113830500	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	120259174	120259175	chr2:120259175:T:C	rs4594445	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	120269340	120269341	chr2:120269341:A:C	rs187250107	A	C	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	120407492	120407493	chr2:120407493:C:T	rs67933862	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	120436348	120436349	chr2:120436349:C:T	rs12613245	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	120525523	120525524	chr2:120525524:C:T	rs555243051	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	120531530	120531531	chr2:120531531:C:T	rs2311302	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	120710624	120710625	chr2:120710625:A:G	rs7600172	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	120735868	120735869	chr2:120735869:C:T	rs137992430	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	120735882	120735883	chr2:120735883:A:G	rs190719923	A	G	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	120743641	120743642	chr2:120743642:A:C	rs707484	A	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	120758665	120758666	chr2:120758666:C:T	rs114630906	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	120758695	120758696	chr2:120758696:G:A	rs80279798	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	120783498	120783499	chr2:120783499:G:A	rs11685179	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	120869599	120869600	chr2:120869600:A:G	rs4848126	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	120872283	120872284	chr2:120872284:A:G	rs2871873	A	G	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	121176577	121176578	chr2:121176578:A:G	rs35049421	A	G	A	Hoxa9_MA0594.1	7	1	+	7.811441225681866	0.9085075519789467	CTCATCTATCA
chr2	121833344	121833345	chr2:121833345:A:G	rs59346462	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	121838963	121838964	chr2:121838964:A:C	rs72830873	A	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	121867853	121867854	chr2:121867854:C:T	rs4465772	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	122064490	122064491	chr2:122064491:A:C	chr2:122064491:A:C	A	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	122064491	122064492	chr2:122064492:A:G	rs148306180	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	122390213	122390214	chr2:122390214:C:T	rs4848769	C	T	C	Hoxa9_MA0594.1	9	1	+	7.727146254177281	5.102433035593043	ACCCTAAATCA
chr2	122503734	122503735	chr2:122503735:A:G	rs941219	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	122610243	122610244	chr2:122610244:C:T	rs13425635	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	122651380	122651381	chr2:122651381:C:T	rs1439841	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	122683095	122683096	chr2:122683096:G:C	rs10496594	G	C	G	Hoxa9_MA0594.1	9	1	-	8.159236377169226	1.3609054154683788	GTCATAAAACA
chr2	123356170	123356171	chr2:123356171:G:T	rs62167128	G	T	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	123540410	123540411	chr2:123540411:C:T	rs62162721	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	123723770	123723771	chr2:123723771:G:A	rs7593488	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	124354588	124354589	chr2:124354589:A:G	rs62171018	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	125260985	125260986	chr2:125260986:G:C	rs557266393	G	C	G	Hoxa9_MA0594.1	2	1	-	7.390499134806127	0.866599147057787	CCCATACATCT
chr2	125683119	125683120	chr2:125683120:A:G	rs2114601	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	126372804	126372805	chr2:126372805:T:C	rs13034238	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	126461337	126461338	chr2:126461338:T:C	rs10928857	T	C	c	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	126695809	126695810	chr2:126695810:C:T	rs1530148	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	126763874	126763875	chr2:126763875:C:T	rs115254009	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	126791534	126791535	chr2:126791535:T:G	rs11886274	T	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	126828326	126828327	chr2:126828327:A:G	rs62158478	A	G	A	Hoxa9_MA0594.1	10	1	+	8.66099466428206	2.0242216785292895	TTCATAAATCA
chr2	126839754	126839755	chr2:126839755:C:T	rs62158494	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	126863817	126863818	chr2:126863818:T:C	rs55706164	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	126863825	126863826	chr2:126863826:T:C	rs4413107	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	126916961	126916962	chr2:126916962:C:G	rs113646789	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	127362269	127362270	chr2:127362270:T:C	rs55998444	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	127398227	127398228	chr2:127398228:C:T	rs374451036	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	127453597	127453598	chr2:127453598:A:G	rs13383674	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	127584649	127584650	chr2:127584650:T:C	rs77901993	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	127589138	127589139	chr2:127589139:G:A	rs186862929	G	A	G	Hoxa9_MA0594.1	0	1	-	6.837082112140813	4.292116766932545	CCCATCCATCT
chr2	127691225	127691226	chr2:127691226:A:G	rs6751352	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	127835128	127835129	chr2:127835129:T:C	rs72963799	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	127888194	127888195	chr2:127888195:A:C	rs62159277	A	C	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	127942175	127942176	chr2:127942176:G:C	rs2304519	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	128321389	128321390	chr2:128321390:C:T	chr2:128321390:C:T	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	128394186	128394187	chr2:128394187:A:G	rs182695218	A	G	A	Hoxa9_MA0594.1	3	1	+	11.655360678656521	8.673564251247663	ACCATAAATCA
chr2	128681463	128681464	chr2:128681464:C:T	rs55744746	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	128785254	128785255	chr2:128785255:C:T	rs17048785	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	129089307	129089308	chr2:129089308:T:A	rs1519449	T	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	129160248	129160249	chr2:129160249:A:G	rs72846167	A	G	G	Hoxa9_MA0594.1	7	1	+	7.438771319837264	0.5358376461343441	GGCATCAATCT
chr2	129559148	129559149	chr2:129559149:G:A	rs13002450	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	129575617	129575618	chr2:129575618:T:G	chr2:129575618:T:G	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	129649646	129649647	chr2:129649647:C:G	rs11681113	C	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	129825929	129825930	chr2:129825930:A:G	rs2707652	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	129864824	129864825	chr2:129864825:A:G	rs13426022	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	130825810	130825811	chr2:130825811:G:A	rs35031046	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	130892449	130892450	chr2:130892450:C:T	rs13407188	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	131662696	131662697	chr2:131662697:G:C	rs11693632	G	C	.	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	131837338	131837339	chr2:131837339:C:A	rs13015043	C	A	c	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	131924582	131924583	chr2:131924583:A:G	rs7561718	A	G	a	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	132448337	132448338	chr2:132448338:G:A	rs115785372	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	132518293	132518294	chr2:132518294:T:C	rs4606980	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	132611342	132611343	chr2:132611343:A:G	rs10496689	A	G	A	Hoxa9_MA0594.1	4	1	-	8.077400274154538	1.1686454948393166	GCCATTAATCT
chr2	132611397	132611398	chr2:132611398:G:A	rs72841252	G	A	g	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	132876976	132876977	chr2:132876977:A:C	rs72850141	A	C	A	Hoxa9_MA0594.1	5	1	+	8.425059106811483	7.8716420841461705	CACATAAATCT
chr2	133080662	133080663	chr2:133080663:A:G	rs6430390	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	133226254	133226255	chr2:133226255:T:C	rs34599537	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	133601289	133601290	chr2:133601290:C:T	rs79321042	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	133675455	133675456	chr2:133675456:G:A	rs573783785	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	133750676	133750677	chr2:133750677:C:T	rs16828728	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	133887242	133887243	chr2:133887243:C:A	rs80292959	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	134105106	134105107	chr2:134105107:A:G	rs16830064	A	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	134119733	134119734	chr2:134119734:T:G	rs531184127	T	G	T	Hoxa9_MA0594.1	7	1	-	9.45271635848298	4.468174804941482	GCCATAAATAA
chr2	134119743	134119744	chr2:134119744:C:A	rs115259802	C	A	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	134212908	134212909	chr2:134212909:G:A	rs35490142	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	134233261	134233262	chr2:134233262:A:C	rs112503076	A	C	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	134324872	134324873	chr2:134324873:G:A	rs11674550	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	134413584	134413585	chr2:134413585:C:T	rs71417506	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	134446642	134446643	chr2:134446643:C:A	rs78405979	C	A	C	Hoxa9_MA0594.1	5	1	-	9.112852618472068	8.655440400273676	GTCATGAATCA
chr2	134502499	134502500	chr2:134502500:C:T	rs503562	C	T	T	Hoxa9_MA0594.1	0	1	-	10.159406543039145	9.294221030316594	GTCATAAATCT
chr2	134595612	134595613	chr2:134595613:C:T	rs13410301	C	T	C	Hoxa9_MA0594.1	0	1	-	9.708665347141455	8.843479834418904	GTTATAAATCA
chr2	134773431	134773432	chr2:134773432:T:A	rs4954173	T	A	T	Hoxa9_MA0594.1	4	1	+	7.864522907426146	0.9557681281109267	ACCATCCATCA
chr2	134956132	134956133	chr2:134956133:G:A	rs3769023	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	135953045	135953046	chr2:135953046:C:T	rs75346069	C	T	C	Hoxa9_MA0594.1	2	1	+	8.077400274154538	6.157069191027315	GCCATTAATCT
chr2	136126214	136126215	chr2:136126215:G:C	rs77895594	G	C	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	136126252	136126253	chr2:136126253:C:T	rs4954391	C	T	c	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	136324214	136324215	chr2:136324215:A:G	rs117974130	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	136384929	136384930	chr2:136384930:A:G	rs867563	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	136584141	136584142	chr2:136584142:C:T	rs10193021	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	137168555	137168556	chr2:137168556:G:T	rs12997500	G	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	137179676	137179677	chr2:137179677:T:G	rs13020502	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	137206365	137206366	chr2:137206366:T:C	rs13385888	T	C	T	Hoxa9_MA0594.1	3	1	-	8.232403979495325	5.250607552086466	CTCATTAATCA
chr2	137212743	137212744	chr2:137212744:A:C	rs7568204	A	C	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	137231832	137231833	chr2:137231833:G:A	rs34585777	G	A	G	Hoxa9_MA0594.1	2	1	-	9.030647460072283	7.110316376945061	ACCATAAATTA
chr2	138222096	138222097	chr2:138222097:A:G	rs4954854	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	138254266	138254267	chr2:138254267:A:T	rs7565340	A	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	138622901	138622902	chr2:138622902:C:T	rs13420160	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	138676798	138676799	chr2:138676799:T:G	rs13012479	T	G	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	138720510	138720511	chr2:138720511:C:T	rs34561430	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	139564746	139564747	chr2:139564747:A:G	rs73962726	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	140002271	140002272	chr2:140002272:T:C	rs6744509	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	140109249	140109250	chr2:140109250:A:G	rs16843323	A	G	G	Hoxa9_MA0594.1	8	1	-	7.8637947703911975	0.9905067202913087	GCAGTCAATCA
chr2	140437057	140437058	chr2:140437058:T:C	rs17387292	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	140593430	140593431	chr2:140593431:G:A	rs540949	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	141341481	141341482	chr2:141341482:A:T	rs2683841	A	T	A	Hoxa9_MA0594.1	8	1	-	8.391575681703616	4.921815628604164	GTCATACATCA
chr2	141622956	141622957	chr2:141622957:T:A	rs10460249	T	A	A	Hoxa9_MA0594.1	7	1	-	7.656437520341079	0.753503846638159	GCCATCTATCT
chr2	141899027	141899028	chr2:141899028:T:C	rs1435598	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	141927754	141927755	chr2:141927755:G:A	rs13013316	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	142127722	142127723	chr2:142127723:T:C	rs1449486	T	C	c	Hoxa9_MA0594.1	6	1	-	7.632183602891756	0.8145828171360991	ACCATCAAACA
chr2	142185810	142185811	chr2:142185811:A:C	rs10198708	A	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	142897345	142897346	chr2:142897346:A:T	rs4662187	A	T	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	143141849	143141850	chr2:143141850:G:C	rs3910609	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	143571987	143571988	chr2:143571988:C:T	rs7606634	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	143733333	143733334	chr2:143733334:C:T	rs13005371	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	143876968	143876969	chr2:143876969:T:C	rs13017800	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	143901769	143901770	chr2:143901770:C:G	rs527589357	C	G	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	144180270	144180271	chr2:144180271:G:T	rs79034922	G	T	G	Hoxa9_MA0594.1	1	1	-	11.101943655991207	8.899082879431504	ACCATCAATCA
chr2	144464889	144464890	chr2:144464890:A:T	chr2:144464890:A:T	A	T	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	144713721	144713722	chr2:144713722:A:T	rs67963154	A	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	144806477	144806478	chr2:144806478:A:G	rs1483491	A	G	A	Hoxa9_MA0594.1	8	1	+	7.581196251050087	6.096060374211071	GCCATAAAACT
chr2	144942919	144942920	chr2:144942920:C:T	rs559746216	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	145023705	145023706	chr2:145023706:G:C	rs2579024	G	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	145798804	145798805	chr2:145798805:C:T	rs2178633	C	T	C	Hoxa9_MA0594.1	9	1	+	10.507458459354975	7.882745240770737	GTAATAAATCA
chr2	146312862	146312863	chr2:146312863:T:G	rs139665567	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	146806687	146806688	chr2:146806688:G:A	rs28742032	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	146918524	146918525	chr2:146918525:A:T	rs10496999	A	T	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	147000282	147000283	chr2:147000283:G:C	rs2263138	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	147352934	147352935	chr2:147352935:C:T	rs58108379	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	147450855	147450856	chr2:147450856:A:T	rs55769826	A	T	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	147645053	147645054	chr2:147645054:A:G	rs76923047	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	147703430	147703431	chr2:147703431:T:C	rs12474024	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	148680641	148680642	chr2:148680642:G:A	rs6759083	G	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	148935909	148935910	chr2:148935910:G:T	rs62182689	G	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	148974395	148974396	chr2:148974396:T:C	rs6738453	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	149124998	149124999	chr2:149124999:T:C	rs10803829	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	149141443	149141444	chr2:149141444:G:A	rs184866713	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	149169793	149169794	chr2:149169794:G:C	rs144720638	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	149422773	149422774	chr2:149422774:T:G	rs6720216	T	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	149487817	149487818	chr2:149487818:A:G	rs17348610	A	G	A	Hoxa9_MA0594.1	3	1	+	8.247667105749517	5.265870678340658	ATCATGAATCA
chr2	149580745	149580746	chr2:149580746:A:G	rs75395224	A	G	A	Hoxa9_MA0594.1	10	1	+	11.544092747935409	4.90731976218264	CCCATCAATCA
chr2	149701331	149701332	chr2:149701332:A:G	rs4667407	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	149826859	149826860	chr2:149826860:C:T	rs9288699	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	150178798	150178799	chr2:150178799:C:G	rs116404915	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	150178800	150178801	chr2:150178801:T:G	rs73004255	T	G	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	150185231	150185232	chr2:150185232:T:G	rs1031213	T	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	150185264	150185265	chr2:150185265:A:G	rs1031214	A	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	150188212	150188213	chr2:150188213:A:G	rs73968341	A	G	A	Hoxa9_MA0594.1	5	1	+	9.452499902096816	6.936356090300206	AACATAAATCA
chr2	150280287	150280288	chr2:150280288:G:A	rs141104256	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	150370849	150370850	chr2:150370850:A:G	rs1866979	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	150494798	150494799	chr2:150494799:T:C	rs10930130	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	150587818	150587819	chr2:150587819:G:C	rs4233661	G	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	150811390	150811391	chr2:150811391:G:T	rs1519773	G	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	150829209	150829210	chr2:150829210:A:C	rs73967448	A	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	150998196	150998197	chr2:150998197:A:T	rs2341844	A	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	151016946	151016947	chr2:151016947:G:A	rs10930374	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	151111895	151111896	chr2:151111896:A:T	rs4374368	A	T	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	151229497	151229498	chr2:151229498:T:C	rs289905	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	151238921	151238922	chr2:151238922:G:A	rs753507131	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	151262227	151262228	chr2:151262228:G:A	rs77536789	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	151336955	151336956	chr2:151336956:C:T	rs28638170	C	T	C	Hoxa9_MA0594.1	1	1	+	9.181612572863987	8.29006281175359	ACTATCAATCA
chr2	151337718	151337719	chr2:151337719:C:T	rs11682727	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	151349384	151349385	chr2:151349385:C:G	rs77107710	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	151491670	151491671	chr2:151491671:C:T	rs4414676	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	151971766	151971767	chr2:151971767:C:G	rs7607341	C	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	151977310	151977311	chr2:151977311:A:G	rs4664513	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	151979940	151979941	chr2:151979941:A:G	rs11893938	A	G	G	Hoxa9_MA0594.1	5	1	+	9.196147443905666	6.680003632109054	GAAATAAATCA
chr2	151999141	151999142	chr2:151999142:A:C	rs80056271	A	C	C	Hoxa9_MA0594.1	7	1	+	9.980405685077507	4.995864131536007	ACAATCAATCA
chr2	151999157	151999158	chr2:151999158:C:T	rs140995858	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	152234456	152234457	chr2:152234457:T:A	rs10497098	T	A	T	Hoxa9_MA0594.1	9	1	+	8.774295001881132	8.33117838756928	GCAATAAATTA
chr2	152413385	152413386	chr2:152413386:A:G	rs144755008	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	152580485	152580486	chr2:152580486:A:G	rs16831410	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	152804474	152804475	chr2:152804475:G:C	rs1896292	G	C	g	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	152875076	152875077	chr2:152875077:G:A	rs72862165	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	153005205	153005206	chr2:153005206:T:C	rs1260273725	T	C	T	Hoxa9_MA0594.1	7	1	-	9.341231971375704	2.4382982976727834	CACATCAATCA
chr2	153072555	153072556	chr2:153072556:C:T	rs11681154	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	153223327	153223328	chr2:153223328:T:C	rs13021536	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	153308314	153308315	chr2:153308315:G:T	rs4664664	G	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	153479659	153479660	chr2:153479660:G:A	rs67092640	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	153940597	153940598	chr2:153940598:A:G	rs74362097	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	153940600	153940601	chr2:153940601:T:C	rs1519203	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	154704248	154704249	chr2:154704249:G:C	rs7596632	G	C	C	Hoxa9_MA0594.1	0	1	+	9.45271635848298	9.02967993770463	GCCATAAATAA
chr2	155149478	155149479	chr2:155149479:C:T	rs6724928	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	155149480	155149481	chr2:155149481:G:A	rs10184990	G	A	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	155215541	155215542	chr2:155215542:A:C	rs189724230	A	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	155830984	155830985	chr2:155830985:G:A	rs34110901	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	155930416	155930417	chr2:155930417:C:T	rs10189214	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	156199793	156199794	chr2:156199794:C:A	rs75538066	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	156340389	156340390	chr2:156340390:T:A	rs541831948	T	A	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	156664377	156664378	chr2:156664378:T:C	rs62178502	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	156893177	156893178	chr2:156893178:T:G	rs150665220	T	G	T	Hoxa9_MA0594.1	5	1	-	7.700782005789437	7.147364983124122	GTCCTAAATCA
chr2	157459944	157459945	chr2:157459945:G:A	rs78796964	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	157472958	157472959	chr2:157472959:A:C	rs2198581	A	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	157692858	157692859	chr2:157692859:T:C	rs16841991	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	157866670	157866671	chr2:157866671:A:T	rs6437117	A	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	158567359	158567360	chr2:158567360:A:G	rs10933492	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	158651224	158651225	chr2:158651225:A:G	rs111829602	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	158688138	158688139	chr2:158688139:G:A	rs757924	G	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	158774588	158774589	chr2:158774589:A:C	rs112868397	A	C	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	159125184	159125185	chr2:159125185:G:C	rs10187615	G	C	G	Hoxa9_MA0594.1	0	1	-	8.614832151347091	9.037868572125442	CTAATAAATCT
chr2	159185686	159185687	chr2:159185687:G:A	rs17494014	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	159926220	159926221	chr2:159926221:A:G	rs1877194	A	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	160210350	160210351	chr2:160210351:T:C	rs6750639	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	160700313	160700314	chr2:160700314:C:T	rs75456612	C	T	C	Hoxa9_MA0594.1	2	1	+	8.68180464866152	6.761473565534297	ACCATTAATCA
chr2	160700340	160700341	chr2:160700341:T:C	rs59348517	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	160849320	160849321	chr2:160849321:A:T	rs270950	A	T	T	Hoxa9_MA0594.1	4	1	-	8.134870038543875	1.2261152592286542	CCAATATATCA
chr2	160869350	160869351	chr2:160869351:C:G	rs2218908	C	G	C	Hoxa9_MA0594.1	9	1	+	8.62774971750127	1.829418755800423	CCCATAAAACA
chr2	160909978	160909979	chr2:160909979:G:T	rs146505540	G	T	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	160994380	160994381	chr2:160994381:T:C	rs9287802	T	C	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	161135146	161135147	chr2:161135147:G:A	rs3754978	G	A	G	Hoxa9_MA0594.1	2	1	-	8.647200002859819	6.7268689197325955	GTCGTAAATCA
chr2	162036769	162036770	chr2:162036770:T:C	rs2284869	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	162132249	162132250	chr2:162132250:A:C	rs13011432	A	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	163066832	163066833	chr2:163066833:C:T	rs12692677	C	T	C	Hoxa9_MA0594.1	1	1	+	9.064232820513286	8.17268305940289	ACAATAAATCT
chr2	163736328	163736329	chr2:163736329:G:T	rs1008239550	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	163801304	163801305	chr2:163801305:G:A	rs17810265	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	163860439	163860440	chr2:163860440:T:G	rs17810888	T	G	T	Hoxa9_MA0594.1	6	1	-	9.7350295955293	6.497608846964238	ACTATAAATCA
chr2	164617483	164617484	chr2:164617484:C:T	rs569448161	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	164651332	164651333	chr2:164651333:C:T	rs6754919	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	165015277	165015278	chr2:165015278:G:A	chr2:165015278:G:A	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	165015293	165015294	chr2:165015294:A:G	rs1048774824	A	G	A	Hoxa9_MA0594.1	3	1	+	7.1129682170592226	4.131171789650365	CCCATAACTCA
chr2	165171628	165171629	chr2:165171629:A:G	rs11903523	A	G	A	Hoxa9_MA0594.1	3	1	+	10.046798085586536	7.065001658177677	GCTATCAATCA
chr2	165448336	165448337	chr2:165448337:A:G	rs13035204	A	G	A	Hoxa9_MA0594.1	3	1	+	7.959399534385545	4.977603106976686	CCAATCAATCC
chr2	165640508	165640509	chr2:165640509:G:A	chr2:165640509:G:A	G	A	G	Hoxa9_MA0594.1	9	1	-	7.5836428429503755	4.958929624366137	GCTATCAATCC
chr2	165836140	165836141	chr2:165836141:T:C	rs17209563	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	165836175	165836176	chr2:165836176:T:A	rs6742727	T	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	166179327	166179328	chr2:166179328:G:A	rs115056333	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	166193435	166193436	chr2:166193436:G:A	rs16851730	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	166239973	166239974	chr2:166239974:A:G	rs17748381	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	166312304	166312305	chr2:166312305:T:A	rs4131159	T	A	T	Hoxa9_MA0594.1	4	1	+	8.73221190369779	1.8234571243825688	CTTATCAATCA
chr2	166412076	166412077	chr2:166412077:C:T	rs75496810	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	166419943	166419944	chr2:166419944:T:C	rs7587041	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	166634881	166634882	chr2:166634882:C:T	rs7587122	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	166818845	166818846	chr2:166818846:A:G	rs79319705	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	167345932	167345933	chr2:167345933:T:C	rs76266634	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	167380858	167380859	chr2:167380859:A:T	rs78133516	A	T	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	167753299	167753300	chr2:167753300:G:A	rs144571496	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	167987759	167987760	chr2:167987760:A:T	rs145535988	A	T	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	168087616	168087617	chr2:168087617:A:T	rs75094419	A	T	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	168150330	168150331	chr2:168150331:A:G	rs1400641	A	G	A	Hoxa9_MA0594.1	3	1	+	9.452499902096816	6.470703474687958	AACATAAATCA
chr2	168185259	168185260	chr2:168185260:A:G	rs4668044	A	G	A	Hoxa9_MA0594.1	2	1	+	11.39900822046537	5.996646203630733	GCAATAAATCA
chr2	168320537	168320538	chr2:168320538:T:C	rs6433050	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	168322401	168322402	chr2:168322402:T:C	rs35534889	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	168364318	168364319	chr2:168364319:C:T	rs3931951	C	T	C	Hoxa9_MA0594.1	0	1	+	11.205960009490326	8.66099466428206	CTCATAAATCA
chr2	168427578	168427579	chr2:168427579:G:A	rs1452286	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	168427583	168427584	chr2:168427584:C:T	rs1993158	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	168460912	168460913	chr2:168460913:G:C	rs77001493	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	168494678	168494679	chr2:168494679:C:T	rs11897550	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr2	168699546	168699547	chr2:168699547:G:A	rs6709565	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	169010719	169010720	chr2:169010720:G:A	rs6751775	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	169331722	169331723	chr2:169331723:G:C	rs72880444	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	169364387	169364388	chr2:169364388:C:T	rs532352452	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	169365399	169365400	chr2:169365400:C:A	rs830952	C	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	169766956	169766957	chr2:169766957:A:G	rs55646685	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	169964978	169964979	chr2:169964979:A:G	chr2:169964979:A:G	A	G	A	Hoxa9_MA0594.1	10	1	-	7.64612345596233	6.652558100555703	CCCGTAAATCT
chr2	170073369	170073370	chr2:170073370:G:A	rs10202446	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	170087704	170087705	chr2:170087705:G:A	rs35270111	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	170087736	170087737	chr2:170087737:A:G	rs10930399	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	170097246	170097247	chr2:170097247:A:G	rs12053414	A	G	A	Hoxa9_MA0594.1	6	1	+	8.08407129645524	1.2664705106995835	GCTATGAATCA
chr2	170142665	170142666	chr2:170142666:G:A	rs12474899	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	170236752	170236753	chr2:170236753:G:A	rs111890139	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	170354020	170354021	chr2:170354021:A:G	rs7559456	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	170362636	170362637	chr2:170362637:A:G	rs1356589	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	170421193	170421194	chr2:170421194:C:T	rs13011668	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	170475937	170475938	chr2:170475938:T:C	rs10200118	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	170475953	170475954	chr2:170475954:C:T	rs7607878	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	170524132	170524133	chr2:170524133:T:G	rs34020565	T	G	T	Hoxa9_MA0594.1	3	1	-	8.510815797847973	4.582601373368731	ACAATCAATCT
chr2	170571767	170571768	chr2:170571768:G:A	rs41376445	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	170574289	170574290	chr2:170574290:T:G	rs58351027	T	G	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	170715245	170715246	chr2:170715246:G:A	rs186745331	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	170943204	170943205	chr2:170943205:T:C	rs10803854	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	172096822	172096823	chr2:172096823:C:T	rs73976554	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	172227352	172227353	chr2:172227353:C:G	rs10198133	C	G	G	Hoxa9_MA0594.1	3	1	-	8.673564251247663	7.727146254177281	ACCGTAAATCA
chr2	172281037	172281038	chr2:172281038:G:T	rs4972763	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	172281056	172281057	chr2:172281057:T:C	rs4972764	T	C	C	Hoxa9_MA0594.1	7	1	-	8.220877979215818	1.3179443055128974	GCAATCAATTA
chr2	172510275	172510276	chr2:172510276:A:G	rs7565216	A	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	172739934	172739935	chr2:172739935:G:A	rs13000099	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	172739966	172739967	chr2:172739967:T:C	rs74493482	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	172889048	172889049	chr2:172889049:C:T	rs3769276	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	172928553	172928554	chr2:172928554:T:C	rs3769258	T	C	T	Hoxa9_MA0594.1	3	1	-	8.88286440866876	5.901067981259902	GCAATGAATCA
chr2	172954197	172954198	chr2:172954198:T:G	rs74813388	T	G	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	173021906	173021907	chr2:173021907:G:C	rs16861180	G	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	173088382	173088383	chr2:173088383:C:T	rs114199777	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	173425226	173425227	chr2:173425227:C:T	rs6433409	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	173425264	173425265	chr2:173425265:T:C	rs6433410	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	173522924	173522925	chr2:173522925:C:G	rs2358263	C	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	173764306	173764307	chr2:173764307:T:C	rs185591820	T	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	173764321	173764322	chr2:173764322:A:G	rs79824576	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	174131692	174131693	chr2:174131693:G:A	rs4972430	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	174163561	174163562	chr2:174163562:A:G	rs58610158	A	G	g	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	174335855	174335856	chr2:174335856:A:G	rs541885847	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	174335877	174335878	chr2:174335878:G:T	rs139486714	G	T	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	174624138	174624139	chr2:174624139:G:C	rs115598990	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	174698958	174698959	chr2:174698959:A:G	rs7420834	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	174842000	174842001	chr2:174842001:C:T	rs1350126	C	T	C	Hoxa9_MA0594.1	2	1	+	8.425059106811483	6.504728023684261	CACATAAATCT
chr2	175233259	175233260	chr2:175233260:G:A	rs141004317	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	175233281	175233282	chr2:175233282:C:T	rs4972748	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr2	175262502	175262503	chr2:175262503:T:C	rs13387453	T	C	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	175270396	175270397	chr2:175270397:G:A	rs12611773	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	175370872	175370873	chr2:175370873:C:T	rs117075983	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	175431264	175431265	chr2:175431265:G:A	rs184292968	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	175435163	175435164	chr2:175435164:G:T	rs2461760	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	175536064	175536065	chr2:175536065:A:C	rs13390826	A	C	C	Hoxa9_MA0594.1	4	1	-	8.908361207066799	1.9996064277515766	GGCATCAATCA
chr2	176077716	176077717	chr2:176077717:G:T	rs77887170	G	T	g	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	176094233	176094234	chr2:176094234:C:T	rs72923425	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	176098480	176098481	chr2:176098481:A:G	rs147871181	A	G	A	Hoxa9_MA0594.1	3	1	+	7.536004637837573	4.554208210428715	GCCATAACTCA
chr2	176164357	176164358	chr2:176164358:C:T	rs2857541	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	176174468	176174469	chr2:176174469:G:A	rs1549334	G	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	176450471	176450472	chr2:176450472:C:T	rs56180938	C	T	C	Hoxa9_MA0594.1	0	1	+	9.623761664808185	7.078796319599917	CCTATCAATCA
chr2	176643956	176643957	chr2:176643957:C:T	rs55746644	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	176668933	176668934	chr2:176668934:C:T	rs78966616	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	176818842	176818843	chr2:176818843:T:C	rs115787600	T	C	T	Hoxa9_MA0594.1	4	1	+	8.58753084576043	1.6787760664452103	ACCATAAATAA
chr2	177075318	177075319	chr2:177075319:G:A	rs7578683	G	A	g	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	177093606	177093607	chr2:177093607:C:T	rs1822692	C	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	177161829	177161830	chr2:177161830:C:T	rs2706126	C	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	177546346	177546347	chr2:177546347:A:G	rs4893961	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	177589512	177589513	chr2:177589513:A:G	rs188337444	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	177597570	177597571	chr2:177597571:C:G	rs10497501	C	G	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	177619712	177619713	chr2:177619713:A:G	rs116183267	A	G	A	Hoxa9_MA0594.1	5	1	+	10.627919883371188	8.11177607157458	CCCATAAATCT
chr2	177626035	177626036	chr2:177626036:G:A	rs74660778	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	177670107	177670108	chr2:177670108:G:A	rs6757651	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	177670254	177670255	chr2:177670255:C:G	rs7605493	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	177681169	177681170	chr2:177681170:C:T	rs9679360	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	178009200	178009201	chr2:178009201:A:T	rs17687170	A	T	T	Hoxa9_MA0594.1	3	1	+	8.99912740272714	2.156390760119451	TCCATCAATCA
chr2	178047891	178047892	chr2:178047892:G:A	rs73972673	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	178451995	178451996	chr2:178451996:T:C	rs78717143	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	178629809	178629810	chr2:178629810:A:G	rs1011723372	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	178807819	178807820	chr2:178807820:T:C	rs2046778	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	178865654	178865655	chr2:178865655:T:C	rs78925638	T	C	T	Hoxa9_MA0594.1	3	1	-	8.01767889594621	5.035882468537351	ACAATGAATCA
chr2	179276896	179276897	chr2:179276897:G:A	rs6713924	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	179454937	179454938	chr2:179454938:T:C	rs116588569	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	179626425	179626426	chr2:179626426:A:T	rs77265227	A	T	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	180155024	180155025	chr2:180155025:T:C	rs956032774	T	C	T	Hoxa9_MA0594.1	7	1	-	7.390499134806127	0.48756546110320714	CCCATACATCT
chr2	180449719	180449720	chr2:180449720:C:T	rs73038104	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	180479118	180479119	chr2:180479119:C:T	rs113703571	C	T	C	Hoxa9_MA0594.1	0	1	-	11.628996430268678	10.763810917546127	GTCATAAATCA
chr2	180505128	180505129	chr2:180505129:C:T	rs12471899	C	T	C	Hoxa9_MA0594.1	2	1	+	8.689816197693718	6.769485114566494	CTCATGAATCA
chr2	180567852	180567853	chr2:180567853:T:C	rs17602848	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr2	180876800	180876801	chr2:180876801:G:A	rs4561626	G	A	.	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	180876841	180876842	chr2:180876842:G:A	rs4331465	G	A	.	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	180942888	180942889	chr2:180942889:T:C	rs6759936	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	181077308	181077309	chr2:181077309:T:C	rs11902957	T	C	T	Hoxa9_MA0594.1	4	1	+	10.185770791426988	3.2770160121117677	ACCATAAATCT
chr2	181077309	181077310	chr2:181077310:A:G	rs2176550	A	G	A	Hoxa9_MA0594.1	5	1	+	10.185770791426988	7.6696269796303795	ACCATAAATCT
chr2	181152902	181152903	chr2:181152903:A:G	rs55954384	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	181264070	181264071	chr2:181264071:G:T	rs1899037	G	T	T	Hoxa9_MA0594.1	1	1	-	8.497369115614307	6.294508339054602	GCCATCAAACA
chr2	181367110	181367111	chr2:181367111:C:T	rs13394574	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	181367146	181367147	chr2:181367147:C:G	rs112490762	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	181686774	181686775	chr2:181686775:C:T	rs6756950	C	T	c	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	181785812	181785813	chr2:181785813:T:A	rs13399033	T	A	T	Hoxa9_MA0594.1	10	1	-	9.196147443905666	7.726557556676132	GAAATAAATCA
chr2	181995694	181995695	chr2:181995695:A:G	rs1153741	A	G	A	Hoxa9_MA0594.1	3	1	+	9.064232820513286	6.082436393104428	ACAATAAATCT
chr2	182088182	182088183	chr2:182088183:A:C	rs1196149	A	C	C	Hoxa9_MA0594.1	8	1	-	7.64612345596233	2.691227526023862	CCCGTAAATCT
chr2	182141823	182141824	chr2:182141824:C:A	rs4666577	C	A	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	182184827	182184828	chr2:182184828:A:G	rs56282499	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	182280525	182280526	chr2:182280526:A:G	rs72897061	A	G	A	Hoxa9_MA0594.1	4	1	-	9.181612572863987	2.2728577935487646	ACTATCAATCA
chr2	182349252	182349253	chr2:182349253:C:T	rs6730984	C	T	T	Hoxa9_MA0594.1	1	1	+	8.58753084576043	7.695981084650036	ACCATAAATAA
chr2	182349259	182349260	chr2:182349260:T:C	rs2623431	T	C	T	Hoxa9_MA0594.1	8	1	+	8.58753084576043	1.7142427956605415	ACCATAAATAA
chr2	182360306	182360307	chr2:182360307:C:T	rs144244838	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	182447685	182447686	chr2:182447686:T:C	rs74575794	T	C	T	Hoxa9_MA0594.1	8	1	+	10.185770791426988	3.312482741327099	ACCATAAATCT
chr2	182593464	182593465	chr2:182593465:C:T	rs10497607	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	182617145	182617146	chr2:182617146:A:C	rs1997239	A	C	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	182617157	182617158	chr2:182617158:T:C	rs71427856	T	C	T	Hoxa9_MA0594.1	5	1	-	11.655360678656521	9.139216866859913	ACCATAAATCA
chr2	182655994	182655995	chr2:182655995:T:C	rs13397013	T	C	T	Hoxa9_MA0594.1	3	1	-	11.101943655991207	8.120147228582349	ACCATCAATCA
chr2	182685524	182685525	chr2:182685525:A:C	rs59019914	A	C	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	182900460	182900461	chr2:182900461:A:C	rs762948332	A	C	a	Hoxa9_MA0594.1	6	1	+	8.88286440866876	5.645443660103699	GCAATGAATCA
chr2	183036023	183036024	chr2:183036024:A:C	rs3791246	A	C	A	Hoxa9_MA0594.1	6	1	+	8.431006454478752	5.19358570591369	TCAATAAATCA
chr2	183495310	183495311	chr2:183495311:G:A	rs919978939	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	183592505	183592506	chr2:183592506:G:A	rs34376551	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	183893439	183893440	chr2:183893440:C:T	rs826144	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	186453459	186453460	chr2:186453460:A:G	rs10200873	A	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	186762839	186762840	chr2:186762840:G:A	rs2595381	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	187079866	187079867	chr2:187079867:C:T	rs72906928	C	T	c	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	187187813	187187814	chr2:187187814:C:A	rs11894499	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	187346384	187346385	chr2:187346385:C:T	rs3771095	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	187514592	187514593	chr2:187514593:G:A	rs35612915	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	187547301	187547302	chr2:187547302:T:A	rs58835850	T	A	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	187923135	187923136	chr2:187923136:C:T	rs115113664	C	T	C	Hoxa9_MA0594.1	3	1	-	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr2	187949985	187949986	chr2:187949986:T:G	rs73980984	T	G	T	Hoxa9_MA0594.1	3	1	-	9.53100501591131	5.602790591432069	CTAATCAATCA
chr2	187986590	187986591	chr2:187986591:T:C	rs551904963	T	C	-	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	187986615	187986616	chr2:187986616:T:C	rs115416094	T	C	T	Hoxa9_MA0594.1	3	1	-	7.747238652244652	4.765442224835793	ATCATCAATCC
chr2	188303079	188303080	chr2:188303080:C:A	rs34445909	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	188518116	188518117	chr2:188518117:A:G	rs34005308	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	189009804	189009805	chr2:189009805:T:C	rs6715268	T	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	189115209	189115210	chr2:189115210:T:C	rs62182413	T	C	t	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	189369975	189369976	chr2:189369976:A:C	rs79351150	A	C	a	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	189447023	189447024	chr2:189447024:T:G	rs10201772	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	189566004	189566005	chr2:189566005:A:G	rs57782175	A	G	A	Hoxa9_MA0594.1	0	1	+	10.53382270774282	11.39900822046537	ACAATAAATCA
chr2	190094654	190094655	chr2:190094655:C:G	rs73978913	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	190466657	190466658	chr2:190466658:A:C	rs76106481	A	C	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	190501980	190501981	chr2:190501981:A:G	rs1128723	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	190702814	190702815	chr2:190702815:G:C	rs62179714	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	190708775	190708776	chr2:190708776:T:G	rs10153559	T	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	190965050	190965051	chr2:190965051:C:T	rs1168	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	191189304	191189305	chr2:191189305:T:C	rs57235797	T	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	191385816	191385817	chr2:191385817:A:G	rs13000398	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	191436888	191436889	chr2:191436889:T:G	chr2:191436889:T:G	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	191436892	191436893	chr2:191436893:C:T	rs573548933	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	191441780	191441781	chr2:191441781:A:G	rs74865805	A	G	A	Hoxa9_MA0594.1	3	1	+	9.894648994041017	6.912852566632158	CACATAAATCA
chr2	191441799	191441800	chr2:191441800:A:G	rs76546393	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	191446625	191446626	chr2:191446626:T:G	rs7594764	T	G	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	191543742	191543743	chr2:191543743:A:G	rs7561808	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	191570420	191570421	chr2:191570421:A:C	rs55956171	A	C	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr2	191601702	191601703	chr2:191601703:C:T	rs7562092	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	191725379	191725380	chr2:191725380:A:T	rs35250979	A	T	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	191841019	191841020	chr2:191841020:A:G	rs79566098	A	G	A	Hoxa9_MA0594.1	4	1	-	10.1771786874735	3.2684239081582795	CCTATAAATCA
chr2	192187118	192187119	chr2:192187119:G:A	rs6752021	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	192193948	192193949	chr2:192193949:T:C	rs73984914	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	192885745	192885746	chr2:192885746:G:A	rs16835017	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	193055463	193055464	chr2:193055464:A:G	rs12474870	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	193187904	193187905	chr2:193187905:C:T	rs13383214	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	193501833	193501834	chr2:193501834:C:G	rs4850333	C	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	193576202	193576203	chr2:193576203:A:T	rs4145308	A	T	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	193948827	193948828	chr2:193948828:A:G	chr2:193948828:A:G	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	194497876	194497877	chr2:194497877:T:G	rs2360100	T	G	T	Hoxa9_MA0594.1	0	1	-	9.181612572863987	9.623761664808185	ACTATCAATCA
chr2	195318682	195318683	chr2:195318683:A:G	rs16839391	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	195546834	195546835	chr2:195546835:A:C	rs59017643	A	C	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	195580500	195580501	chr2:195580501:T:C	rs17793759	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	195903990	195903991	chr2:195903991:A:G	rs148579567	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	196132261	196132262	chr2:196132262:C:T	rs2176727	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	196142544	196142545	chr2:196142545:A:T	rs2889145	A	T	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	196177177	196177178	chr2:196177178:C:T	rs186922524	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	196177178	196177179	chr2:196177179:T:G	rs74676051	T	G	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	196246286	196246287	chr2:196246287:C:T	rs1563380	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	196248972	196248973	chr2:196248973:G:A	rs10931734	G	A	G	Hoxa9_MA0594.1	9	1	-	7.66103487567689	5.0363216570926514	CCTATGAATCA
chr2	196355098	196355099	chr2:196355099:A:C	rs10183987	A	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	196927735	196927736	chr2:196927736:A:T	rs569333413	A	T	a	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	197054684	197054685	chr2:197054685:G:A	rs2376204	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	197273745	197273746	chr2:197273746:C:T	rs116220125	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	197279814	197279815	chr2:197279815:C:T	rs4850785	C	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	197571378	197571379	chr2:197571379:A:G	rs7582536	A	G	G	Hoxa9_MA0594.1	0	1	+	8.01767889594621	8.88286440866876	ACAATGAATCA
chr2	197803478	197803479	chr2:197803479:T:C	rs77803264	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	197828978	197828979	chr2:197828979:C:T	rs700674	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	198014718	198014719	chr2:198014719:T:A	rs62277902	T	A	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	198749345	198749346	chr2:198749346:A:G	rs1533528	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	198801386	198801387	chr2:198801387:T:C	rs13035389	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	199458242	199458243	chr2:199458243:C:G	rs868307916	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	199902788	199902789	chr2:199902789:C:T	rs1658807	C	T	T	Hoxa9_MA0594.1	0	1	-	7.581196251050087	6.716010738327537	GCCATAAAACT
chr2	200081402	200081403	chr2:200081403:G:T	rs10497847	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	200223447	200223448	chr2:200223448:A:G	rs1369843	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	200554114	200554115	chr2:200554115:T:C	rs2347861	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	200600948	200600949	chr2:200600949:G:A	rs2470897	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	200600994	200600995	chr2:200600995:T:G	rs2463492	T	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	200617324	200617325	chr2:200617325:G:A	rs55758454	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	200701246	200701247	chr2:200701247:A:G	rs2540054	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	200825018	200825019	chr2:200825019:C:T	rs12995928	C	T	-	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	201533747	201533748	chr2:201533748:T:C	rs4675149	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	201533763	201533764	chr2:201533764:T:C	rs4673180	T	C	C	Hoxa9_MA0594.1	5	1	-	7.992188342502578	5.476044530705968	GGCATAAATCT
chr2	201652950	201652951	chr2:201652951:T:C	rs10931966	T	C	T	Hoxa9_MA0594.1	5	1	-	8.134870038543875	5.618726226747264	CCAATATATCA
chr2	201926263	201926264	chr2:201926264:C:A	rs6713805	C	A	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	202064421	202064422	chr2:202064422:A:G	rs577330231	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	202152338	202152339	chr2:202152339:G:A	rs13007734	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	203567880	203567881	chr2:203567881:T:C	rs6730171	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	203681672	203681673	chr2:203681673:C:A	chr2:203681673:C:A	C	A	.	Hoxa9_MA0594.1	1	1	+	8.707588800243967	6.504728023684261	CCTATAAATCT
chr2	203840872	203840873	chr2:203840873:G:T	rs73055455	G	T	g	Hoxa9_MA0594.1	9	1	-	10.422554777021706	7.354724944125614	CCAATCAATCA
chr2	203869484	203869485	chr2:203869485:A:G	rs531963406	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	203899158	203899159	chr2:203899159:A:C	rs3096851	A	C	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	204315317	204315318	chr2:204315318:C:T	rs2353850	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	204340187	204340188	chr2:204340188:C:T	rs140076797	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	204346525	204346526	chr2:204346526:A:G	rs9653325	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	204850521	204850522	chr2:204850522:G:A	rs10469651	G	A	A	Hoxa9_MA0594.1	5	1	-	11.544092747935409	9.123953740605721	CCCATCAATCA
chr2	205034263	205034264	chr2:205034264:T:C	rs146954174	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	205139825	205139826	chr2:205139826:G:A	rs79190501	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	205170971	205170972	chr2:205170972:G:A	rs17188687	G	A	A	Hoxa9_MA0594.1	0	1	-	8.11177607157458	5.5668107263663105	CCCATGAATCT
chr2	205586197	205586198	chr2:205586198:G:A	rs7605598	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	205721124	205721125	chr2:205721125:T:A	rs78111499	T	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	205731085	205731086	chr2:205731086:C:T	rs3771033	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	205747989	205747990	chr2:205747990:G:A	rs12472412	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	205760541	205760542	chr2:205760542:C:G	rs870068	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr2	205821539	205821540	chr2:205821540:C:T	rs80098272	C	T	C	Hoxa9_MA0594.1	1	1	+	11.655360678656521	10.763810917546127	ACCATAAATCA
chr2	205970689	205970690	chr2:205970690:A:G	rs13398122	A	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	206020468	206020469	chr2:206020469:C:A	rs817999	C	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	206672480	206672481	chr2:206672481:C:T	rs16838464	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	206856495	206856496	chr2:206856496:C:T	rs6731722	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	207107487	207107488	chr2:207107488:G:A	rs1263604	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	207343545	207343546	chr2:207343546:C:T	rs16839664	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	207471340	207471341	chr2:207471341:A:G	rs889894	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	207471367	207471368	chr2:207471368:T:C	rs6748416	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	207679555	207679556	chr2:207679556:G:T	rs6722248	G	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	207817476	207817477	chr2:207817477:T:A	rs78388533	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	207952477	207952478	chr2:207952478:T:C	rs12993052	T	C	T	Hoxa9_MA0594.1	1	1	+	8.561166597372587	9.45271635848298	GTCATAAATAA
chr2	208034452	208034453	chr2:208034453:C:G	rs182520272	C	G	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	208136271	208136272	chr2:208136272:A:G	rs150706157	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	208143880	208143881	chr2:208143881:A:G	rs2362791	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	208369266	208369267	chr2:208369267:A:G	rs59863990	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	208632224	208632225	chr2:208632225:T:C	rs13394305	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr2	209090936	209090937	chr2:209090937:A:C	rs1371438	A	C	C	Hoxa9_MA0594.1	5	1	+	8.00320666478695	7.449789642121637	CCCATAAATTT
chr2	209351811	209351812	chr2:209351812:C:T	rs72991819	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	209351816	209351817	chr2:209351817:T:C	rs1867865	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	209469099	209469100	chr2:209469100:C:T	rs34173247	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	209810845	209810846	chr2:209810846:G:T	rs731953	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	210303913	210303914	chr2:210303914:A:G	rs1472955	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	210517593	210517594	chr2:210517594:C:T	rs10932340	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	210792501	210792502	chr2:210792502:T:G	rs10195020	T	G	G	Hoxa9_MA0594.1	8	1	+	6.982587615172259	2.027691685233791	GCCATCACTCA
chr2	211367537	211367538	chr2:211367538:A:G	rs13392814	A	G	A	Hoxa9_MA0594.1	1	1	-	8.74080400765128	9.632353768761673	ATCATCAATCT
chr2	211373640	211373641	chr2:211373641:A:G	rs1971803	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	211652552	211652553	chr2:211652553:T:A	rs12996040	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	211863459	211863460	chr2:211863460:T:G	rs12694254	T	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	212005240	212005241	chr2:212005241:T:C	rs113435200	T	C	T	Hoxa9_MA0594.1	4	1	+	7.565650261440604	0.6568954821253845	GCCATAAAGCA
chr2	212229053	212229054	chr2:212229054:T:C	rs745966150	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	212249834	212249835	chr2:212249835:G:A	rs1402770	G	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	212463800	212463801	chr2:212463801:C:T	rs114024466	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	212620272	212620273	chr2:212620273:T:C	rs2068404	T	C	C	Hoxa9_MA0594.1	7	1	-	8.027829768240773	1.1248960945378537	CTCATCAATTA
chr2	212870583	212870584	chr2:212870584:A:G	rs10460330	A	G	A	Hoxa9_MA0594.1	3	1	+	8.74080400765128	5.75900758024242	ATCATCAATCT
chr2	212902145	212902146	chr2:212902146:T:A	rs1007682	T	A	t	Hoxa9_MA0594.1	3	1	-	9.256408009457576	2.413671366849888	CCCATATATCA
chr2	213766869	213766870	chr2:213766870:A:G	rs1023467305	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr2	214577974	214577975	chr2:214577975:T:A	rs7568263	T	A	T	Hoxa9_MA0594.1	4	1	+	9.112852618472068	2.204097839156847	GTCATGAATCA
chr2	214604959	214604960	chr2:214604960:T:G	rs184487546	T	G	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	214816404	214816405	chr2:214816405:T:G	rs10176190	T	G	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	215075518	215075519	chr2:215075519:T:C	rs6711179	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	215296379	215296380	chr2:215296380:T:C	rs16853723	T	C	T	Hoxa9_MA0594.1	6	1	-	8.73221190369779	1.914611117942133	CTTATCAATCA
chr2	215604939	215604940	chr2:215604940:G:C	rs13011254	G	C	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	215619729	215619730	chr2:215619730:C:G	rs10188310	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	215619740	215619741	chr2:215619741:A:T	rs59242305	A	T	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	215713317	215713318	chr2:215713318:A:G	rs9646760	A	G	A	Hoxa9_MA0594.1	5	1	+	8.364858248347181	5.848714436550571	CTCATATATCA
chr2	215719799	215719800	chr2:215719800:C:T	rs1004071	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	215742486	215742487	chr2:215742487:G:A	rs12987160	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	215750202	215750203	chr2:215750203:T:C	rs6758001	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	216002217	216002218	chr2:216002218:C:G	rs3770562	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	216774852	216774853	chr2:216774853:A:T	chr2:216774853:A:T	A	T	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	216872025	216872026	chr2:216872026:G:A	rs6744975	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	216881241	216881242	chr2:216881242:C:T	rs1179719	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr2	217162531	217162532	chr2:217162532:A:T	rs1023497256	A	T	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr2	217289885	217289886	chr2:217289886:C:T	rs11676756	C	T	T	Hoxa9_MA0594.1	0	1	+	7.2334010995627285	4.68843575435446	CCCATCTATCT
chr2	217362564	217362565	chr2:217362565:T:G	rs78096412	T	G	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	217468474	217468475	chr2:217468475:G:A	rs1478584	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	217556789	217556790	chr2:217556790:C:G	rs7571683	C	G	G	Hoxa9_MA0594.1	6	1	+	9.283125442814011	5.702945405623416	GCCATACATCA
chr2	217556790	217556791	chr2:217556791:A:G	rs6435989	A	G	G	Hoxa9_MA0594.1	7	1	+	9.283125442814011	2.3801917691110916	GCCATACATCA
chr2	217818415	217818416	chr2:217818416:G:A	rs34291329	G	A	G	Hoxa9_MA0594.1	9	1	-	9.503973926077597	6.8792607074933585	GCCATCAATCC
chr2	217818430	217818431	chr2:217818431:A:G	rs2571445	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	217978038	217978039	chr2:217978039:G:A	rs10211490	G	A	g	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	218223240	218223241	chr2:218223241:C:T	rs141015685	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	218223272	218223273	chr2:218223273:T:C	rs7558119	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	218999679	218999680	chr2:218999680:A:C	rs422433	A	C	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	219017617	219017618	chr2:219017618:T:A	rs569665070	T	A	T	Hoxa9_MA0594.1	3	1	-	8.306671999370346	1.4639353567626583	CCCATCCATCA
chr2	219079603	219079604	chr2:219079604:C:T	rs568558028	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	219200827	219200828	chr2:219200828:G:C	rs114672818	G	C	a	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	219200827	219200828	chr2:219200828:G:T	chr2:219200828:G:T	G	T	a	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	219328673	219328674	chr2:219328674:C:T	rs11892648	C	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	219640698	219640699	chr2:219640699:C:T	rs72961491	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	219728521	219728522	chr2:219728522:G:A	rs35899342	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	219728524	219728525	chr2:219728525:A:G	rs13019246	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	219967913	219967914	chr2:219967914:G:A	rs6706508	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	219997687	219997688	chr2:219997688:A:G	rs34305871	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	220217017	220217018	chr2:220217018:T:C	rs10207046	T	C	T	Hoxa9_MA0594.1	2	1	+	9.285628926363104	11.205960009490326	CTTATAAATCA
chr2	220552972	220552973	chr2:220552973:C:A	rs550086740	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr2	220877737	220877738	chr2:220877738:T:A	rs666941	T	A	A	Hoxa9_MA0594.1	8	1	+	9.642272946632424	6.172512893532972	ATAATAAATCA
chr2	220905555	220905556	chr2:220905556:G:A	rs2457408	G	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr2	221104527	221104528	chr2:221104528:G:A	rs28590725	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr2	221169364	221169365	chr2:221169365:A:G	rs62186153	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	221266130	221266131	chr2:221266131:A:G	chr2:221266131:A:G	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	221346769	221346770	chr2:221346770:A:G	rs4674584	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr2	221514671	221514672	chr2:221514672:G:A	rs10498116	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	221520771	221520772	chr2:221520772:C:G	rs149835334	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	221607442	221607443	chr2:221607443:A:G	rs2710524	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	221779503	221779504	chr2:221779504:C:A	rs73990442	C	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	221810434	221810435	chr2:221810435:A:T	rs116012661	A	T	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	222060016	222060017	chr2:222060017:A:G	rs17336511	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	222080331	222080332	chr2:222080332:T:C	rs348987	T	C	T	Hoxa9_MA0594.1	7	1	-	11.205960009490326	4.303026335787407	CTCATAAATCA
chr2	222080344	222080345	chr2:222080345:G:A	rs78748503	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	222121495	222121496	chr2:222121496:T:C	rs16863407	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	222226059	222226060	chr2:222226060:T:G	rs1013262	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr2	222570048	222570049	chr2:222570049:T:C	rs13426706	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	222702296	222702297	chr2:222702297:A:G	rs951997	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	223156213	223156214	chr2:223156214:T:C	rs73073425	T	C	T	Hoxa9_MA0594.1	7	1	-	7.301113149517894	0.39817947581497304	GACATCAATCC
chr2	223156217	223156218	chr2:223156218:T:C	rs76060818	T	C	T	Hoxa9_MA0594.1	3	1	-	7.301113149517894	4.319316722109034	GACATCAATCC
chr2	223223392	223223393	chr2:223223393:T:C	rs6718133	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	223414261	223414262	chr2:223414262:T:C	rs13422610	T	C	T	Hoxa9_MA0594.1	3	1	-	7.216289187599767	4.234492760190907	GCCATATATCC
chr2	223433634	223433635	chr2:223433635:A:G	rs16864777	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	223452667	223452668	chr2:223452668:T:A	rs10194880	T	A	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	223508923	223508924	chr2:223508924:A:C	rs714945	A	C	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	223514224	223514225	chr2:223514225:A:C	rs146356824	A	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	223930020	223930021	chr2:223930021:G:T	rs717610	G	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	224033709	224033710	chr2:224033710:A:G	rs7562213	A	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	224164201	224164202	chr2:224164202:T:C	rs6756793	T	C	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr2	224268509	224268510	chr2:224268510:G:C	rs16865705	G	C	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	224344527	224344528	chr2:224344528:G:A	rs714056	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	224533151	224533152	chr2:224533152:C:T	rs74932603	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	224926304	224926305	chr2:224926305:T:C	rs9288594	T	C	T	Hoxa9_MA0594.1	4	1	+	7.66103487567689	0.75228009636167	CCTATGAATCA
chr2	225007029	225007030	chr2:225007030:C:T	rs16866455	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr2	225008623	225008624	chr2:225008624:C:T	rs12474884	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	225008640	225008641	chr2:225008641:C:T	rs13418728	C	T	C	Hoxa9_MA0594.1	1	1	+	11.655360678656521	10.763810917546127	ACCATAAATCA
chr2	225043339	225043340	chr2:225043340:C:T	rs10198304	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	225227065	225227066	chr2:225227066:G:T	rs17481193	G	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	225911271	225911272	chr2:225911272:G:C	rs11899060	G	C	G	Hoxa9_MA0594.1	9	1	-	9.037868572125442	2.2395376104245943	GTAATAAATCT
chr2	226407335	226407336	chr2:226407336:T:C	rs12993707	T	C	C	Hoxa9_MA0594.1	1	1	+	10.084422038576625	10.97597179968702	CTAATAAATCA
chr2	226445501	226445502	chr2:226445502:A:G	rs79629786	A	G	A	Hoxa9_MA0594.1	10	1	+	7.565650261440604	0.9288772756878352	GCCATAAAGCA
chr2	226656572	226656573	chr2:226656573:A:G	rs4276016	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	226982215	226982216	chr2:226982216:A:G	rs7563644	A	G	G	Hoxa9_MA0594.1	5	1	+	7.536004637837573	5.019860826040964	GCCATAACTCA
chr2	227189467	227189468	chr2:227189468:G:A	rs72975947	G	A	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	227253791	227253792	chr2:227253792:G:A	rs13409219	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr2	227324299	227324300	chr2:227324300:T:C	rs13004292	T	C	T	Hoxa9_MA0594.1	3	1	-	9.764268392154055	6.782471964745194	GACATCAATCA
chr2	227613579	227613580	chr2:227613580:C:A	rs11893140	C	A	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	227908570	227908571	chr2:227908571:T:C	rs11680252	T	C	T	Hoxa9_MA0594.1	3	1	-	8.01767889594621	5.035882468537351	ACAATGAATCA
chr2	227908580	227908581	chr2:227908581:A:C	rs11685422	A	C	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	228115184	228115185	chr2:228115185:G:A	rs10209576	G	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr2	228410341	228410342	chr2:228410342:A:G	rs1469182	A	G	G	Hoxa9_MA0594.1	8	1	-	9.642272946632424	2.7689848965325354	ATAATAAATCA
chr2	228613630	228613631	chr2:228613631:G:A	rs6752685	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	228798587	228798588	chr2:228798588:A:G	rs776973	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	228916784	228916785	chr2:228916785:T:C	rs36052215	T	C	T	Hoxa9_MA0594.1	6	1	-	9.123953740605721	2.3063529548500634	CCCATTAATCA
chr2	229033939	229033940	chr2:229033940:T:C	chr2:229033940:T:C	T	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	229125289	229125290	chr2:229125290:T:C	rs12474997	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	229141653	229141654	chr2:229141654:T:A	rs62190381	T	A	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	229258636	229258637	chr2:229258637:A:G	rs7604426	A	G	a	Hoxa9_MA0594.1	7	1	+	7.118210716167953	0.21527704246503188	CCCATGAATCC
chr2	229370478	229370479	chr2:229370479:T:A	rs721943	T	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	229418593	229418594	chr2:229418594:A:G	rs6735031	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	229616724	229616725	chr2:229616725:A:G	rs10174833	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	229661336	229661337	chr2:229661337:T:C	rs78893337	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr2	229712617	229712618	chr2:229712618:G:A	rs76362200	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	230108542	230108543	chr2:230108543:G:T	rs6705913	G	T	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	230140550	230140551	chr2:230140551:T:A	rs10209232	T	A	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	230157579	230157580	chr2:230157580:G:A	rs1427289	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	230324571	230324572	chr2:230324572:T:C	rs1110010	T	C	c	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	230335931	230335932	chr2:230335932:C:A	rs11890934	C	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr2	230417226	230417227	chr2:230417227:A:G	rs62192253	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	230417235	230417236	chr2:230417236:A:T	rs10191957	A	T	T	Hoxa9_MA0594.1	8	1	-	8.843479834418904	5.373719781319451	ATTATAAATCA
chr2	230521053	230521054	chr2:230521054:T:C	rs144912351	T	C	T	Hoxa9_MA0594.1	4	1	+	9.139216866859913	2.2304620875446917	ACCATGAATCA
chr2	230521066	230521067	chr2:230521067:C:T	rs1194083113	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	230640767	230640768	chr2:230640768:T:G	rs9653272	T	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	230748221	230748222	chr2:230748222:A:G	rs59884204	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr2	230850209	230850210	chr2:230850210:A:T	rs577206324	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	230895543	230895544	chr2:230895544:C:T	rs62195299	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	230895569	230895570	chr2:230895570:G:A	rs1866234	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr2	230920489	230920490	chr2:230920490:T:A	rs1344926	T	A	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	230920490	230920491	chr2:230920491:A:T	rs190960537	A	T	a	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	231212361	231212362	chr2:231212362:A:G	rs5018532	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	231423349	231423350	chr2:231423350:C:G	rs2034412	C	G	C	Hoxa9_MA0594.1	10	1	+	8.044303216718815	3.8706854736022063	GTAATAAATCC
chr2	231426199	231426200	chr2:231426200:C:T	rs537724465	C	T	c	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	231617908	231617909	chr2:231617909:T:C	rs4973454	T	C	T	Hoxa9_MA0594.1	3	1	-	8.62774971750127	5.645953290092412	CCCATAAAACA
chr2	232913148	232913149	chr2:232913149:C:T	rs778364	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	232982186	232982187	chr2:232982187:T:G	rs987885571	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	233015121	233015122	chr2:233015122:A:G	rs373545740	A	G	-	Hoxa9_MA0594.1	7	1	+	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr2	233055690	233055691	chr2:233055691:G:A	rs62642778	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	233055952	233055953	chr2:233055953:A:G	rs28854328	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	233055968	233055969	chr2:233055969:G:C	rs146686079	G	C	G	Hoxa9_MA0594.1	9	1	-	7.260118532919163	0.4617875712183161	GCCATCCATCT
chr2	233317713	233317714	chr2:233317714:T:C	rs76589744	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr2	233325979	233325980	chr2:233325980:A:G	rs3792100	A	G	G	Hoxa9_MA0594.1	2	1	+	8.51281655705086	3.110454540216222	CCAATAAATCC
chr2	233361045	233361046	chr2:233361046:T:G	rs11676845	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr2	233438013	233438014	chr2:233438014:G:A	rs2242102	G	A	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	233566768	233566769	chr2:233566769:G:A	rs62192778	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	233566793	233566794	chr2:233566794:C:T	rs148158811	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	233684394	233684395	chr2:233684395:T:C	rs4347832	T	C	C	Hoxa9_MA0594.1	4	1	+	6.982587615172259	0.07383283585703948	GCCATCACTCA
chr2	233718657	233718658	chr2:233718658:G:A	rs3732218	G	A	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	233816855	233816856	chr2:233816856:T:C	rs726016	T	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	234150716	234150717	chr2:234150717:T:C	rs16850544	T	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	234241148	234241149	chr2:234241149:G:A	rs113197087	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr2	234355143	234355144	chr2:234355144:T:C	rs73119091	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	234372377	234372378	chr2:234372378:A:G	rs12999012	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	234375613	234375614	chr2:234375614:T:C	rs7589325	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	234444878	234444879	chr2:234444879:A:G	rs143165483	A	G	a	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	234449275	234449276	chr2:234449276:C:A	rs147305728	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	234449281	234449282	chr2:234449282:T:C	rs1172526254	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	234535535	234535536	chr2:234535536:T:C	rs10205496	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr2	234544100	234544101	chr2:234544101:G:A	rs72977513	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	234600738	234600739	chr2:234600739:G:A	rs6748568	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	234655657	234655658	chr2:234655658:A:C	rs6715142	A	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	234691118	234691119	chr2:234691119:C:T	rs548951488	C	T	C	Hoxa9_MA0594.1	1	1	+	12.097509770600722	11.205960009490326	CCCATAAATCA
chr2	234964898	234964899	chr2:234964899:C:G	rs890653	C	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr2	234964902	234964903	chr2:234964903:T:C	rs890652	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	234965786	234965787	chr2:234965787:G:A	rs114739058	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr2	235059412	235059413	chr2:235059413:T:G	rs77402002	T	G	T	Hoxa9_MA0594.1	0	1	-	8.59659271700956	9.03874180895376	AGCATAAATCA
chr2	235107400	235107401	chr2:235107401:A:G	rs185385880	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	235107404	235107405	chr2:235107405:T:C	rs76225771	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	235236286	235236287	chr2:235236287:A:C	rs7605655	A	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	235256153	235256154	chr2:235256154:A:G	rs12477347	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	235364960	235364961	chr2:235364961:C:T	rs115278620	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	235502770	235502771	chr2:235502771:T:C	rs12478171	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr2	235523485	235523486	chr2:235523486:T:C	rs11688198	T	C	T	Hoxa9_MA0594.1	7	1	-	7.864522907426146	0.9615892337232261	ACCATCCATCA
chr2	235561922	235561923	chr2:235561923:C:A	rs6414040	C	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr2	235570281	235570282	chr2:235570282:T:C	rs4571013	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr2	235570322	235570323	chr2:235570323:G:A	rs764478156	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr2	235780652	235780653	chr2:235780653:T:C	rs547298956	T	C	T	Hoxa9_MA0594.1	3	1	-	9.623761664808185	6.641965237399327	CCTATCAATCA
chr2	235990474	235990475	chr2:235990475:A:G	rs146206872	A	G	A	Hoxa9_MA0594.1	4	1	-	7.632183602891756	0.723428823576536	ACCATCAAACA
chr2	236164769	236164770	chr2:236164770:C:T	rs60861832	C	T	c	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	236211460	236211461	chr2:236211461:T:C	rs1000688964	T	C	T	Hoxa9_MA0594.1	7	1	-	10.317685414819367	3.414751741116447	GACATAAATCA
chr2	236271442	236271443	chr2:236271443:T:G	rs1973041	T	G	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr2	236340990	236340991	chr2:236340991:G:A	rs146847440	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr2	236585690	236585691	chr2:236585691:C:T	rs6711119	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	236602865	236602866	chr2:236602866:T:G	rs73131738	T	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	236646059	236646060	chr2:236646060:G:A	rs2708187	G	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	236646079	236646080	chr2:236646080:T:A	rs2708186	T	A	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr2	236690239	236690240	chr2:236690240:G:T	rs2600776	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	236698158	236698159	chr2:236698159:A:G	rs73135098	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr2	236698189	236698190	chr2:236698190:G:A	rs183048338	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr2	236713137	236713138	chr2:236713138:A:C	rs79645570	A	C	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	236825665	236825666	chr2:236825666:A:G	rs10208502	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr2	236847556	236847557	chr2:236847557:G:T	rs147372040	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr2	236856245	236856246	chr2:236856246:T:C	rs35140432	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	236856271	236856272	chr2:236856272:G:A	rs35001614	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr2	236872549	236872550	chr2:236872550:G:A	rs4077980	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr2	236886258	236886259	chr2:236886259:C:T	rs111888592	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr2	236911331	236911332	chr2:236911332:C:G	rs145598410	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	236933480	236933481	chr2:236933481:A:G	rs1821655	A	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr2	237208673	237208674	chr2:237208674:T:C	rs62184783	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	237208692	237208693	chr2:237208693:C:T	rs73089850	C	T	C	Hoxa9_MA0594.1	5	1	-	7.022605952173604	9.538749763970214	GCCGTGAATCA
chr2	237291576	237291577	chr2:237291577:G:T	rs144764566	G	T	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	237315680	237315681	chr2:237315681:A:T	rs147839483	A	T	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	237315691	237315692	chr2:237315692:A:G	rs6744212	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr2	237317603	237317604	chr2:237317604:T:G	rs10803658	T	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr2	237354655	237354656	chr2:237354656:C:A	rs2645763	C	A	C	Hoxa9_MA0594.1	0	1	-	9.764268392154055	6.796266626167434	GACATCAATCA
chr2	237384179	237384180	chr2:237384180:C:G	rs116561235	C	G	C	Hoxa9_MA0594.1	2	1	+	7.6696269796303795	1.1457269918820392	ACCATGAATCT
chr2	237402968	237402969	chr2:237402969:C:T	rs2645779	C	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	237403000	237403001	chr2:237403001:G:A	rs3851966	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr2	237408196	237408197	chr2:237408197:T:C	rs116361793	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr2	237433081	237433082	chr2:237433082:C:T	rs930783008	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr2	237498322	237498323	chr2:237498323:T:C	rs57319024	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	237559066	237559067	chr2:237559067:G:A	rs68155722	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	237726488	237726489	chr2:237726489:T:C	rs113468407	T	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr2	237726493	237726494	chr2:237726494:A:C	rs10177762	A	C	C	Hoxa9_MA0594.1	8	1	-	8.689816197693718	3.734920267755249	CTCATGAATCA
chr2	237730639	237730640	chr2:237730640:A:G	rs3769083	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr2	237730659	237730660	chr2:237730660:A:G	rs6721133	A	G	G	Hoxa9_MA0594.1	3	1	+	7.7140234448373395	4.732227017428481	CCTATAAATCC
chr2	237879253	237879254	chr2:237879254:G:T	rs533557873	G	T	G	Hoxa9_MA0594.1	5	1	-	8.510815797847973	9.064232820513286	ACAATCAATCT
chr2	237879265	237879266	chr2:237879266:G:A	rs545341250	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr2	237966364	237966365	chr2:237966365:G:A	rs777319811	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr2	238205451	238205452	chr2:238205452:C:A	rs34465035	C	A	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	238238714	238238715	chr2:238238715:G:A	rs77852620	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	238441845	238441846	chr2:238441846:T:C	rs57080728	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr2	238518937	238518938	chr2:238518938:A:G	rs2334004	A	G	A	Hoxa9_MA0594.1	7	1	+	8.107577641616745	1.204643967913824	TTCATCAATCA
chr2	238655661	238655662	chr2:238655662:C:G	rs114567709	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr2	238658483	238658484	chr2:238658484:T:C	rs4994756	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr2	238791495	238791496	chr2:238791496:A:G	rs535787105	A	G	a	Hoxa9_MA0594.1	7	1	+	9.764268392154055	2.861334718451134	GACATCAATCA
chr2	238861243	238861244	chr2:238861244:C:T	rs146095395	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr2	238875686	238875687	chr2:238875687:T:C	rs143110833	T	C	T	Hoxa9_MA0594.1	4	1	+	12.520546191379072	5.611791412063853	GCCATAAATCA
chr2	238938736	238938737	chr2:238938737:C:T	rs67649492	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	238940090	238940091	chr2:238940091:A:G	rs4377355	A	G	g	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	238940101	238940102	chr2:238940102:A:G	rs62191102	A	G	a	Hoxa9_MA0594.1	10	1	+	8.306671999370346	1.6698990136175773	CCCATCCATCA
chr2	239029298	239029299	chr2:239029299:T:C	rs6704807	T	C	C	Hoxa9_MA0594.1	7	1	-	7.615878323456167	0.7129446497532475	CCCCTCAATCA
chr2	239039066	239039067	chr2:239039067:C:T	rs1005848	C	T	C	Hoxa9_MA0594.1	6	1	+	8.306671999370346	8.702990986792262	CCCATCCATCA
chr2	239048833	239048834	chr2:239048834:T:C	rs79040455	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr2	239191739	239191740	chr2:239191740:C:T	rs3791562	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr2	239260043	239260044	chr2:239260044:C:G	rs71362000	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr2	239260047	239260048	chr2:239260048:C:T	rs890429974	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	239600662	239600663	chr2:239600663:C:T	rs10200488	C	T	G	Hoxa9_MA0594.1	3	1	-	8.56229632052655	11.544092747935409	CCCGTCAATCA
chr2	239600675	239600676	chr2:239600676:A:T	rs113479489	A	T	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr2	239600679	239600680	chr2:239600680:A:T	rs148388850	A	T	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr2	239600681	239600682	chr2:239600682:G:A	rs11124210	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr2	239623440	239623441	chr2:239623441:G:A	rs79204057	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	239753398	239753399	chr2:239753399:A:G	rs11681707	A	G	G	Hoxa9_MA0594.1	6	1	+	7.438771319837264	0.6211705340816069	GGCATCAATCT
chr2	239846782	239846783	chr2:239846783:C:A	rs78242676	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr2	239877399	239877400	chr2:239877400:C:T	rs36151640	C	T	t	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	239895121	239895122	chr2:239895122:C:A	rs13419982	C	A	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	240113164	240113165	chr2:240113165:T:C	rs9784013	T	C	T	Hoxa9_MA0594.1	3	1	-	10.084422038576625	7.102625611167765	CTAATAAATCA
chr2	240198136	240198137	chr2:240198137:A:G	rs78216489	A	G	-	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	240198276	240198277	chr2:240198277:A:G	rs113216298	A	G	-	Hoxa9_MA0594.1	3	1	+	7.864522907426146	4.882726480017287	ACCATCCATCA
chr2	240198416	240198417	chr2:240198417:A:G	rs35761589	A	G	-	Hoxa9_MA0594.1	3	1	+	7.864522907426146	4.882726480017287	ACCATCCATCA
chr2	240198784	240198785	chr2:240198785:A:G	rs35319801	A	G	G	Hoxa9_MA0594.1	3	1	+	7.864522907426146	4.882726480017287	ACCATCCATCA
chr2	240252007	240252008	chr2:240252008:T:C	rs2279687	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr2	240252043	240252044	chr2:240252044:G:A	rs114083294	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr2	240253861	240253862	chr2:240253862:G:A	rs12695010	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr2	240418461	240418462	chr2:240418462:T:C	rs142873729	T	C	T	Hoxa9_MA0594.1	10	1	+	7.260118532919163	6.266553177512536	GCCATCCATCT
chr2	240419006	240419007	chr2:240419007:C:T	rs6746099	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	240521954	240521955	chr2:240521955:T:A	rs13394744	T	A	T	Hoxa9_MA0594.1	5	1	-	9.064232820513286	6.090676790518284	ACAATAAATCT
chr2	240555934	240555935	chr2:240555935:C:T	rs569888099	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr2	240563824	240563825	chr2:240563825:C:T	rs1128152	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr2	240628329	240628330	chr2:240628330:T:A	rs34826997	T	A	t	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr2	240653613	240653614	chr2:240653614:T:C	rs1864867	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr2	240670644	240670645	chr2:240670645:C:T	rs77294644	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr2	240873377	240873378	chr2:240873378:C:G	rs11691745	C	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr2	241078452	241078453	chr2:241078453:C:T	rs58581774	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr2	241150882	241150883	chr2:241150883:C:T	rs141543700	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr2	241185128	241185129	chr2:241185129:C:T	rs28489289	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr2	241558101	241558102	chr2:241558102:T:A	rs76603784	T	A	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr2	241627177	241627178	chr2:241627178:T:C	rs76235535	T	C	T	Hoxa9_MA0594.1	7	1	-	8.88286440866876	1.979930734965841	GCAATGAATCA
chr2	241643941	241643942	chr2:241643942:C:T	rs35807080	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr2	241643942	241643943	chr2:241643943:G:A	rs74976999	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr2	241910626	241910627	chr2:241910627:T:C	rs12993043	T	C	.	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr2	241991108	241991109	chr2:241991109:T:C	rs11683104	T	C	.	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr2	242043543	242043544	chr2:242043544:T:C	rs35023173	T	C	.	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	281469	281470	chr20:281470:C:T	rs66940550	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr20	308351	308352	chr20:308352:T:C	rs6082956	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	366710	366711	chr20:366711:C:G	rs6037435	C	G	G	Hoxa9_MA0594.1	10	1	+	8.07066746510666	3.897049721990051	ACAATAAATCC
chr20	651263	651264	chr20:651264:C:T	rs6076874	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr20	689006	689007	chr20:689007:A:G	rs7261818	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	766378	766379	chr20:766379:C:T	rs34571785	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	1003026	1003027	chr20:1003027:C:T	rs6056532	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	1109737	1109738	chr20:1109738:C:T	rs6131084	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr20	1265373	1265374	chr20:1265374:A:T	rs961542523	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	1283303	1283304	chr20:1283304:C:G	rs7261624	C	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr20	1304904	1304905	chr20:1304905:G:A	rs35467629	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	1733448	1733449	chr20:1733449:A:T	rs202457	A	T	-	Hoxa9_MA0594.1	7	1	+	8.450866189019125	1.5479325153162042	GTCATCAATTA
chr20	1761364	1761365	chr20:1761365:A:G	rs549075696	A	G	A	Hoxa9_MA0594.1	3	1	+	8.08407129645524	5.102274869046382	GCTATGAATCA
chr20	1786639	1786640	chr20:1786640:G:C	rs11697660	G	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	1786650	1786651	chr20:1786651:G:A	rs11087199	G	A	g	Hoxa9_MA0594.1	15	0	-	0	0	.
chr20	1825785	1825786	chr20:1825786:T:C	rs183891	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr20	1825798	1825799	chr20:1825799:C:G	rs145985725	C	G	G	Hoxa9_MA0594.1	0	1	-	9.112852618472068	8.689816197693718	GTCATGAATCA
chr20	1920314	1920315	chr20:1920315:C:T	rs6111988	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr20	2152251	2152252	chr20:2152252:T:C	rs927156	T	C	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	2178589	2178590	chr20:2178590:G:A	rs6113119	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	2218252	2218253	chr20:2218253:A:C	rs6047451	A	C	A	Hoxa9_MA0594.1	1	1	-	8.66099466428206	6.493776463745492	TTCATAAATCA
chr20	2290131	2290132	chr20:2290132:A:C	rs1368767283	A	C	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr20	2290137	2290138	chr20:2290138:G:A	rs6082631	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr20	2688310	2688311	chr20:2688311:A:T	rs6115555	A	T	A	Hoxa9_MA0594.1	4	1	-	8.159236377169226	1.2504815978540056	GTCATAAAACA
chr20	2701559	2701560	chr20:2701560:A:G	rs4141589	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	2804186	2804187	chr20:2804187:A:C	rs215548	A	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	2834584	2834585	chr20:2834585:G:A	rs6051423	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr20	2902551	2902552	chr20:2902552:A:G	rs568591476	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr20	3023632	3023633	chr20:3023633:A:G	rs548859077	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr20	3184713	3184714	chr20:3184714:A:G	rs11087569	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	3437342	3437343	chr20:3437343:T:C	rs10854260	T	C	t	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	3563962	3563963	chr20:3563963:G:A	rs76215205	G	A	G	Hoxa9_MA0594.1	0	1	+	7.260118532919163	6.394933020196612	GCCATCCATCT
chr20	3655063	3655064	chr20:3655064:G:T	rs73893064	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	3662664	3662665	chr20:3662665:G:A	rs6115982	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr20	3753250	3753251	chr20:3753251:G:A	rs75240001	G	A	G	Hoxa9_MA0594.1	8	1	+	6.589196817996939	8.074332694835956	CCCATCAAGCA
chr20	3930373	3930374	chr20:3930374:T:G	rs73084583	T	G	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	3947074	3947075	chr20:3947075:G:A	rs241639	G	A	g	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr20	4057844	4057845	chr20:4057845:C:T	rs945767	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr20	4090363	4090364	chr20:4090364:C:T	rs35873660	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr20	4091287	4091288	chr20:4091288:C:T	rs34806699	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	4091292	4091293	chr20:4091293:A:G	rs34969280	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr20	4189509	4189510	chr20:4189510:C:T	rs6116250	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr20	4189539	4189540	chr20:4189540:A:G	rs1217356	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	4205384	4205385	chr20:4205385:C:T	rs1235695	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr20	4278709	4278710	chr20:4278710:G:C	rs1556825	G	C	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr20	4308418	4308419	chr20:4308419:C:G	rs8123338	C	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr20	4308423	4308424	chr20:4308424:T:C	rs8118540	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	4314977	4314978	chr20:4314978:T:C	rs8120130	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr20	4315002	4315003	chr20:4315003:T:G	rs6116309	T	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr20	4376123	4376124	chr20:4376124:C:G	rs75886431	C	G	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr20	4507592	4507593	chr20:4507593:C:T	rs1489427866	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	4725246	4725247	chr20:4725247:G:A	rs116348581	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	4764424	4764425	chr20:4764425:G:A	rs6076734	G	A	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr20	4930531	4930532	chr20:4930532:T:C	rs78729994	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	4972528	4972529	chr20:4972529:A:T	rs12481301	A	T	A	Hoxa9_MA0594.1	3	1	+	8.425059106811483	1.5823224642037947	CACATAAATCT
chr20	5467304	5467305	chr20:5467305:C:A	rs76453344	C	A	C	Hoxa9_MA0594.1	5	1	+	10.074502860705875	10.627919883371188	CCCATCAATCT
chr20	5481495	5481496	chr20:5481496:T:G	rs6076842	T	G	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	5656906	5656907	chr20:5656907:T:C	rs16991149	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	5818761	5818762	chr20:5818762:C:T	rs1294704	C	T	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	5990419	5990420	chr20:5990420:C:T	rs116443123	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr20	6123360	6123361	chr20:6123361:C:G	rs192668028	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr20	6123363	6123364	chr20:6123364:C:T	rs184246100	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	6692939	6692940	chr20:6692940:G:A	rs149708776	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	6692940	6692941	chr20:6692941:C:A	rs75805761	C	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	6705319	6705320	chr20:6705320:G:A	rs147978545	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	6709854	6709855	chr20:6709855:T:A	rs1015151	T	A	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	6826628	6826629	chr20:6826629:A:C	rs2224191	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr20	6829905	6829906	chr20:6829906:T:C	rs77488608	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	6926953	6926954	chr20:6926954:G:C	rs7268732	G	C	G	Hoxa9_MA0594.1	9	1	-	6.819970200177851	0.021639238477003664	GCCATACATCC
chr20	7355069	7355070	chr20:7355070:G:T	rs2423205	G	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr20	7623511	7623512	chr20:7623512:G:T	rs6038894	G	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr20	7736482	7736483	chr20:7736483:A:C	rs184457107	A	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr20	7828431	7828432	chr20:7828432:G:A	rs116551308	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	7836059	7836060	chr20:7836060:T:C	rs2423289	T	C	T	Hoxa9_MA0594.1	10	1	-	8.33117838756928	1.6944054018165104	GCAATAAATAA
chr20	8208405	8208406	chr20:8208406:A:G	rs6039093	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	8309695	8309696	chr20:8309696:G:A	rs148887226	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	8309704	8309705	chr20:8309705:T:G	rs182327110	T	G	T	Hoxa9_MA0594.1	7	1	-	8.08407129645524	3.0995297429137416	GCTATGAATCA
chr20	8522257	8522258	chr20:8522258:C:T	rs59084416	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	8671412	8671413	chr20:8671413:A:T	rs6077404	A	T	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr20	8877668	8877669	chr20:8877669:G:T	rs4134274	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr20	9036800	9036801	chr20:9036801:A:T	rs6108238	A	T	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr20	9050784	9050785	chr20:9050785:G:A	rs6108245	G	A	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	9072908	9072909	chr20:9072909:C:G	rs724089	C	G	G	Hoxa9_MA0594.1	10	1	+	7.854530172183207	3.6809124290665984	GACATAAATCC
chr20	9083008	9083009	chr20:9083009:A:G	rs6086758	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	9083037	9083038	chr20:9083038:T:C	rs6077484	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	9100747	9100748	chr20:9100748:G:A	rs6056403	G	A	G	Hoxa9_MA0594.1	9	1	-	7.929248167365919	5.30453494878168	GCAATAAAACA
chr20	9200283	9200284	chr20:9200284:G:A	rs62194769	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr20	9229159	9229160	chr20:9229160:G:A	rs76569229	G	A	G	Hoxa9_MA0594.1	8	1	+	7.1426138406622535	8.62774971750127	CCCATAAAGCA
chr20	9312198	9312199	chr20:9312199:G:A	rs7260696	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	9329970	9329971	chr20:9329971:G:C	chr20:9329971:G:C	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr20	9408554	9408555	chr20:9408555:T:C	rs924891878	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	9571570	9571571	chr20:9571571:G:T	rs118142123	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr20	9594386	9594387	chr20:9594387:G:A	rs6086949	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	9594770	9594771	chr20:9594771:T:A	rs181431535	T	A	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	9709458	9709459	chr20:9709459:G:A	rs2423429	G	A	G	Hoxa9_MA0594.1	2	1	-	11.101943655991207	9.181612572863987	ACCATCAATCA
chr20	9927984	9927985	chr20:9927985:A:C	rs4816189	A	C	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	10026033	10026034	chr20:10026034:T:A	rs6057095	T	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr20	10219516	10219517	chr20:10219517:C:T	rs145163809	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr20	10327421	10327422	chr20:10327422:A:C	rs6039854	A	C	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	10352533	10352534	chr20:10352534:C:A	rs956841122	C	A	C	Hoxa9_MA0594.1	1	1	+	7.618418680842992	5.415557904283285	GCTGTAAATCA
chr20	10352536	10352537	chr20:10352537:T:C	rs2423490	T	C	T	Hoxa9_MA0594.1	4	1	+	7.618418680842992	0.7096639015277719	GCTGTAAATCA
chr20	10375375	10375376	chr20:10375376:G:A	rs2206658	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr20	10434470	10434471	chr20:10434471:G:A	rs181633850	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr20	10434476	10434477	chr20:10434477:G:T	rs534633745	G	T	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr20	10548161	10548162	chr20:10548162:T:C	rs592429	T	C	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr20	10619787	10619788	chr20:10619788:A:C	rs1232598	A	C	c	Hoxa9_MA0594.1	23	0	+	0	0	.
chr20	10670063	10670064	chr20:10670064:G:A	rs7271215	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	10795582	10795583	chr20:10795583:G:T	rs563495256	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr20	10902836	10902837	chr20:10902837:A:G	rs6074197	A	G	A	Hoxa9_MA0594.1	2	1	+	8.614832151347091	3.212470134512453	CTAATAAATCT
chr20	10962095	10962096	chr20:10962096:C:A	rs62185663	C	A	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr20	10985349	10985350	chr20:10985350:G:A	rs1887320	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	11002241	11002242	chr20:11002242:C:T	rs193283896	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr20	11119186	11119187	chr20:11119187:C:T	rs1027458897	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr20	11144319	11144320	chr20:11144320:T:A	rs150188095	T	A	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr20	11179424	11179425	chr20:11179425:G:A	rs78353766	G	A	G	Hoxa9_MA0594.1	1	1	-	9.552544425392455	8.66099466428206	TCCATAAATCA
chr20	11244619	11244620	chr20:11244620:C:G	rs6040465	C	G	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	11529231	11529232	chr20:11529232:C:T	rs2423561	C	T	T	Hoxa9_MA0594.1	9	1	+	10.422554777021706	7.797841558437467	CCAATCAATCA
chr20	11581292	11581293	chr20:11581293:G:T	rs149090304	G	T	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr20	11716430	11716431	chr20:11716431:A:C	rs8115792	A	C	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	11881550	11881551	chr20:11881551:G:A	rs6033245	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr20	11882851	11882852	chr20:11882852:G:A	rs6078373	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	11943971	11943972	chr20:11943972:A:C	rs6109198	A	C	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr20	12013583	12013584	chr20:12013584:C:T	rs6033272	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr20	12528213	12528214	chr20:12528214:T:C	rs6041432	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr20	12530014	12530015	chr20:12530015:A:G	rs4625992	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr20	12574367	12574368	chr20:12574368:C:G	rs6134597	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	12591219	12591220	chr20:12591220:T:A	rs73088380	T	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr20	12775144	12775145	chr20:12775145:T:G	chr20:12775145:T:G	T	G	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr20	12775147	12775148	chr20:12775148:A:G	rs6109554	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr20	12982069	12982070	chr20:12982070:A:G	rs364585	A	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	13105055	13105056	chr20:13105056:G:A	rs16993768	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	13247366	13247367	chr20:13247367:G:A	rs114145278	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	13430622	13430623	chr20:13430623:A:G	rs927122	A	G	a	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	13430661	13430662	chr20:13430662:C:T	rs34988299	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr20	13459103	13459104	chr20:13459104:G:A	rs138672952	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	13581833	13581834	chr20:13581834:C:T	rs6134919	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr20	13785800	13785801	chr20:13785801:A:G	rs6110037	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr20	14223886	14223887	chr20:14223887:T:C	rs6079355	T	C	t	Hoxa9_MA0594.1	3	1	-	8.899299335817666	5.917502908408809	GCCATCAATAA
chr20	14440732	14440733	chr20:14440733:C:T	rs915074	C	T	C	Hoxa9_MA0594.1	0	1	-	7.432677730158673	6.567492217436122	GCCATAAATTC
chr20	14489312	14489313	chr20:14489313:G:A	rs12624575	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr20	14514255	14514256	chr20:14514256:A:G	rs34366310	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr20	14687596	14687597	chr20:14687597:G:T	rs6034010	G	T	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	14712803	14712804	chr20:14712804:G:C	rs77506554	G	C	G	Hoxa9_MA0594.1	10	1	-	7.083834918747911	2.9102171756313027	GCCATTAATCC
chr20	15027083	15027084	chr20:15027084:G:A	rs6135329	G	A	A	Hoxa9_MA0594.1	2	1	-	9.452499902096816	7.532168818969594	AACATAAATCA
chr20	15251478	15251479	chr20:15251479:A:C	rs4814350	A	C	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr20	15257225	15257226	chr20:15257226:G:A	rs4813174	G	A	A	Hoxa9_MA0594.1	9	1	-	10.317685414819367	7.692972196235129	GACATAAATCA
chr20	15257248	15257249	chr20:15257249:G:T	rs4813175	G	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr20	15455356	15455357	chr20:15455357:G:A	rs6074898	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	15556852	15556853	chr20:15556853:A:G	rs1151921	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	15653458	15653459	chr20:15653459:T:C	rs458236	T	C	T	Hoxa9_MA0594.1	8	1	+	8.043175694344246	1.169887644244357	AGCATCAATCA
chr20	15664021	15664022	chr20:15664022:G:A	rs455709	G	A	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	15674558	15674559	chr20:15674559:C:T	rs192445179	C	T	C	Hoxa9_MA0594.1	7	1	+	7.1129682170592226	5.194576096897802	CCCATAACTCA
chr20	15785363	15785364	chr20:15785364:C:A	rs7261088	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	15814529	15814530	chr20:15814530:T:C	rs6135551	T	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr20	15857378	15857379	chr20:15857379:C:G	rs175800	C	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	15983645	15983646	chr20:15983646:C:T	rs11699026	C	T	c	Hoxa9_MA0594.1	0	1	-	10.507458459354975	9.642272946632424	GTAATAAATCA
chr20	16000372	16000373	chr20:16000373:A:G	rs6080081	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr20	16019020	16019021	chr20:16019021:A:G	rs6135641	A	G	a	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr20	16040140	16040141	chr20:16040141:C:T	rs775132	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	16078759	16078760	chr20:16078760:T:C	rs4814427	T	C	t	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	16484112	16484113	chr20:16484113:A:G	rs6034498	A	G	a	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	16514505	16514506	chr20:16514506:C:T	rs6034510	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr20	16527415	16527416	chr20:16527416:T:C	rs6135786	T	C	C	Hoxa9_MA0594.1	4	1	+	9.895832972794834	2.987078193479614	GCCATAAATTA
chr20	16689988	16689989	chr20:16689989:C:G	rs6044237	C	G	G	Hoxa9_MA0594.1	0	1	-	9.708665347141455	9.285628926363104	GTTATAAATCA
chr20	16944937	16944938	chr20:16944938:T:A	chr20:16944938:T:A	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr20	17101004	17101005	chr20:17101005:G:A	rs8182714	G	A	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	17346158	17346159	chr20:17346159:A:G	rs981662	A	G	A	Hoxa9_MA0594.1	10	1	+	8.247667105749517	1.6108941199967477	ATCATGAATCA
chr20	17356960	17356961	chr20:17356961:T:A	rs118105629	T	A	T	Hoxa9_MA0594.1	10	1	-	7.185134028456644	5.71554414122711	CCAATCCATCA
chr20	17491083	17491084	chr20:17491084:T:C	rs742427	T	C	T	Hoxa9_MA0594.1	7	1	-	8.038914744234518	1.135981070531598	GCCCTCAATCA
chr20	17543654	17543655	chr20:17543655:C:T	rs8125456	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	17558572	17558573	chr20:17558573:T:A	rs999042183	T	A	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr20	17574521	17574522	chr20:17574522:C:T	rs557449750	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	17853473	17853474	chr20:17853474:C:T	rs2618584	C	T	c	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr20	17889052	17889053	chr20:17889053:C:T	rs370203811	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr20	17937328	17937329	chr20:17937329:T:G	rs111980855	T	G	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr20	18040944	18040945	chr20:18040945:C:G	rs2183077	C	G	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr20	18052343	18052344	chr20:18052344:T:G	rs6034945	T	G	G	Hoxa9_MA0594.1	10	1	-	8.581246790906087	6.118091548269927	CTCATAAATTA
chr20	18273062	18273063	chr20:18273063:G:A	rs117016305	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	18372449	18372450	chr20:18372450:G:A	rs79384128	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	18611725	18611726	chr20:18611726:C:G	rs6081243	C	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr20	18664155	18664156	chr20:18664156:G:T	rs112186792	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr20	18808584	18808585	chr20:18808585:T:C	rs2006779	T	C	C	Hoxa9_MA0594.1	1	1	+	7.747238652244652	8.638788413355046	ATCATCAATCC
chr20	18830671	18830672	chr20:18830672:A:T	rs6136531	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	18904362	18904363	chr20:18904363:C:T	rs910129	C	T	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr20	19115980	19115981	chr20:19115981:A:G	rs6045837	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr20	19117866	19117867	chr20:19117867:T:C	rs6045843	T	C	C	Hoxa9_MA0594.1	8	1	+	7.378505182244407	0.505217132144518	CACATGAATCA
chr20	19308941	19308942	chr20:19308942:G:A	rs6045983	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	19429723	19429724	chr20:19429724:C:T	rs73288770	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	19454135	19454136	chr20:19454136:T:G	rs1023220380	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr20	19555244	19555245	chr20:19555245:G:A	rs73130681	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	19661294	19661295	chr20:19661295:C:T	rs76615206	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	19812157	19812158	chr20:19812158:A:G	rs6046335	A	G	A	Hoxa9_MA0594.1	7	1	+	9.708665347141455	2.8057316734385345	GTTATAAATCA
chr20	19812166	19812167	chr20:19812167:T:C	rs6046336	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	19936009	19936010	chr20:19936010:G:T	rs13042178	G	T	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr20	19952543	19952544	chr20:19952544:G:A	rs1876813	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	19968818	19968819	chr20:19968819:A:T	rs6035494	A	T	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr20	19977490	19977491	chr20:19977491:C:T	rs529757167	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr20	19986096	19986097	chr20:19986097:T:C	rs35918302	T	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr20	19986109	19986110	chr20:19986110:T:C	rs6046517	T	C	T	Hoxa9_MA0594.1	7	1	-	8.581246790906087	1.6783131172031682	CTCATAAATTA
chr20	20198595	20198596	chr20:20198596:T:C	rs1040583	T	C	C	Hoxa9_MA0594.1	10	1	+	9.130625221022317	8.13705986561569	GCTATAAATCT
chr20	20410987	20410988	chr20:20410988:G:A	rs1400088323	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	20437328	20437329	chr20:20437329:C:A	rs144952077	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr20	20747961	20747962	chr20:20747962:C:T	rs150787919	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	21353012	21353013	chr20:21353013:G:C	rs6082393	G	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr20	21353029	21353030	chr20:21353030:G:A	rs6075794	G	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr20	22180390	22180391	chr20:22180391:T:G	rs804581	T	G	t	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	22219775	22219776	chr20:22219776:A:G	rs804614	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	22227126	22227127	chr20:22227127:T:G	rs6113585	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr20	22308329	22308330	chr20:22308330:G:T	rs185637	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	22832924	22832925	chr20:22832925:T:C	rs6137763	T	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr20	23028806	23028807	chr20:23028807:G:A	rs220990	G	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	23287106	23287107	chr20:23287107:G:A	rs6076046	G	A	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	23330411	23330412	chr20:23330412:G:T	rs73100837	G	T	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	23332605	23332606	chr20:23332606:C:T	rs189436006	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	23390601	23390602	chr20:23390602:C:A	rs75913957	C	A	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	23422195	23422196	chr20:23422196:G:A	rs2424552	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr20	23597478	23597479	chr20:23597479:G:C	rs6048922	G	C	G	Hoxa9_MA0594.1	2	1	-	8.247667105749517	1.7237671180011769	ATCATGAATCA
chr20	23753930	23753931	chr20:23753931:T:G	rs4600730	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	23753970	23753971	chr20:23753971:G:T	rs4470397	G	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	23759523	23759524	chr20:23759524:G:A	rs4419289	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	23996798	23996799	chr20:23996799:T:A	rs3843774	T	A	a	Hoxa9_MA0594.1	15	0	+	0	0	.
chr20	24024620	24024621	chr20:24024621:C:T	rs6036615	C	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr20	24024621	24024622	chr20:24024622:A:G	rs6036616	A	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	24158522	24158523	chr20:24158523:A:G	rs7354351	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	24533784	24533785	chr20:24533785:G:A	rs80051415	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr20	24561644	24561645	chr20:24561645:C:T	rs1326301	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr20	24577733	24577734	chr20:24577734:A:G	rs6114782	A	G	A	Hoxa9_MA0594.1	3	1	+	8.58753084576043	5.605734418351572	ACCATAAATAA
chr20	24584009	24584010	chr20:24584010:G:A	rs62215296	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr20	24673271	24673272	chr20:24673272:T:C	rs6049850	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr20	24673272	24673273	chr20:24673273:G:A	rs6049851	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr20	24673290	24673291	chr20:24673291:G:T	rs66630249	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr20	24673306	24673307	chr20:24673307:T:A	rs6049853	T	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	24679900	24679901	chr20:24679901:T:G	chr20:24679901:T:G	T	G	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr20	24679904	24679905	chr20:24679905:T:C	chr20:24679905:T:C	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	24694906	24694907	chr20:24694907:C:T	rs188366406	C	T	C	Hoxa9_MA0594.1	1	1	+	7.432677730158673	6.541127969048279	GCCATAAATTC
chr20	24800783	24800784	chr20:24800784:T:C	rs226697	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr20	24837443	24837444	chr20:24837444:A:G	rs6083638	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr20	24840336	24840337	chr20:24840337:C:T	rs6083639	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	24894879	24894880	chr20:24894880:G:A	rs180694514	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	24971670	24971671	chr20:24971671:A:C	rs193275354	A	C	A	Hoxa9_MA0594.1	7	1	+	8.86008902203566	3.8755474684941618	CCCATACATCA
chr20	25197168	25197169	chr20:25197169:T:C	rs2268879	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr20	25246262	25246263	chr20:25246263:C:T	rs74173671	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr20	25259452	25259453	chr20:25259453:G:A	rs60043588	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr20	25455646	25455647	chr20:25455647:C:G	rs2235607	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	25470543	25470544	chr20:25470544:C:T	rs449370	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr20	25559937	25559938	chr20:25559938:C:T	rs73337349	C	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	25603123	25603124	chr20:25603124:T:C	rs242128	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	25603126	25603127	chr20:25603127:G:T	rs34485039	G	T	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr20	25692772	25692773	chr20:25692773:A:G	rs6050793	A	G	A	Hoxa9_MA0594.1	3	1	+	8.351258581102782	5.369462153693923	CCAATAAATTA
chr20	25997212	25997213	chr20:25997213:A:G	rs6107126	A	G	.	Hoxa9_MA0594.1	4	1	-	8.18560062555707	1.2768458462418502	ACCATAAAACA
chr20	29321020	29321021	chr20:29321021:G:A	rs879048798	G	A	.	Hoxa9_MA0594.1	21	0	-	0	0	.
chr20	30300106	30300107	chr20:30300107:T:C	rs6567440	T	C	.	Hoxa9_MA0594.1	0	1	-	9.632353768761673	10.497539281484224	ACCATCAATCT
chr20	30300356	30300357	chr20:30300357:G:A	rs8113960	G	A	.	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	30316229	30316230	chr20:30316230:G:A	rs146471460	G	A	.	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	30506478	30506479	chr20:30506479:G:C	rs1236184288	G	C	.	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	30851681	30851682	chr20:30851682:G:A	rs1349452964	G	A	.	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	30908046	30908047	chr20:30908047:C:T	rs1424310055	C	T	.	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	31854194	31854195	chr20:31854195:A:T	rs6089100	A	T	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	32003550	32003551	chr20:32003551:A:G	rs6061086	A	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	32629150	32629151	chr20:32629151:T:A	rs4911250	T	A	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr20	32743843	32743844	chr20:32743844:T:G	chr20:32743844:T:G	T	G	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	32743858	32743859	chr20:32743859:T:A	rs79040027	T	A	T	Hoxa9_MA0594.1	7	1	-	7.983126471253447	1.0801927975505277	GCCATAAATAT
chr20	32779272	32779273	chr20:32779273:G:T	rs1569686	G	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr20	32779304	32779305	chr20:32779305:C:T	rs10485500	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr20	32914525	32914526	chr20:32914526:A:C	rs6119304	A	C	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr20	33100453	33100454	chr20:33100454:C:T	rs11696307	C	T	c	Hoxa9_MA0594.1	28	0	-	0	0	.
chr20	33260664	33260665	chr20:33260665:A:C	rs6059214	A	C	C	Hoxa9_MA0594.1	8	1	-	7.727146254177281	2.7722503242388132	ACCCTAAATCA
chr20	33647627	33647628	chr20:33647628:G:C	rs957188792	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr20	33667297	33667298	chr20:33667298:G:T	rs1421048388	G	T	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr20	33667308	33667309	chr20:33667309:A:G	rs79854256	A	G	A	Hoxa9_MA0594.1	3	1	+	6.589196817996939	3.607400390588081	CCCATCAAGCA
chr20	33685210	33685211	chr20:33685211:G:C	rs3213147	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	33726896	33726897	chr20:33726897:A:G	rs73263542	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	33781547	33781548	chr20:33781548:A:C	rs6088301	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	34054108	34054109	chr20:34054109:G:T	rs6088389	G	T	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr20	34164686	34164687	chr20:34164687:G:T	rs6120546	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr20	34257229	34257230	chr20:34257230:T:C	rs6059742	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr20	34877485	34877486	chr20:34877486:A:C	rs6120750	A	C	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	35128631	35128632	chr20:35128632:C:G	chr20:35128632:C:G	C	G	C	Hoxa9_MA0594.1	5	1	+	9.15524832447614	7.192521535344844	GTTATCAATCA
chr20	35152027	35152028	chr20:35152028:G:A	rs6058194	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr20	35192493	35192494	chr20:35192494:A:G	rs4911474	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	35192530	35192531	chr20:35192531:G:A	rs4911475	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr20	35272037	35272038	chr20:35272038:A:G	rs116233827	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr20	35317522	35317523	chr20:35317523:C:T	rs2145082	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	35422287	35422288	chr20:35422288:C:T	rs224319	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	35700931	35700932	chr20:35700932:C:T	rs3088078	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	35991474	35991475	chr20:35991475:T:C	rs2050930	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr20	36139050	36139051	chr20:36139051:C:A	rs75653149	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	36305289	36305290	chr20:36305290:A:G	rs753701587	A	G	A	Hoxa9_MA0594.1	4	1	-	7.415122238259951	0.5063674589447316	CTCATCCATCA
chr20	37232026	37232027	chr20:37232027:G:A	rs909870	G	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	37240938	37240939	chr20:37240939:A:G	rs11086970	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr20	37352452	37352453	chr20:37352453:T:C	rs8125374	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr20	37381685	37381686	chr20:37381686:C:T	rs3762205	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	37524636	37524637	chr20:37524637:G:A	rs145718145	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	37581232	37581233	chr20:37581233:T:G	rs6012571	T	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr20	37581335	37581336	chr20:37581336:G:A	rs746072	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	37641369	37641370	chr20:37641370:G:A	rs4810966	G	A	.	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	37641400	37641401	chr20:37641401:C:T	rs169160	C	T	.	Hoxa9_MA0594.1	15	0	+	0	0	.
chr20	37857660	37857661	chr20:37857661:T:C	rs4811231	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr20	37864524	37864525	chr20:37864525:C:T	rs6063714	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr20	37898812	37898813	chr20:37898813:T:C	rs6096781	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr20	37976537	37976538	chr20:37976538:T:C	rs144521877	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	38269855	38269856	chr20:38269856:G:A	rs78640658	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr20	38293724	38293725	chr20:38293725:G:T	rs141325858	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr20	38358697	38358698	chr20:38358698:C:T	rs6127849	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	38386274	38386275	chr20:38386275:A:G	rs2864143	A	G	A	Hoxa9_MA0594.1	3	1	+	8.082954538162921	5.101158110754062	TCCATAAATCT
chr20	38428774	38428775	chr20:38428775:C:T	rs41282826	C	T	C	Hoxa9_MA0594.1	2	1	+	7.075594521334054	5.155263438206831	GCCGTAAATCC
chr20	38581918	38581919	chr20:38581919:G:T	rs6015420	G	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	38826625	38826626	chr20:38826626:C:T	rs909865	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr20	39142603	39142604	chr20:39142604:G:A	rs118187261	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr20	39401835	39401836	chr20:39401836:G:A	rs4474942	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr20	39429738	39429739	chr20:39429739:A:G	rs6101527	A	G	A	Hoxa9_MA0594.1	7	1	+	7.529537515497607	0.6266038417946866	TCCATCAATCT
chr20	39619637	39619638	chr20:39619638:T:C	rs2093264	T	C	T	Hoxa9_MA0594.1	3	1	-	9.581365958804113	6.599569531395254	CCCATGAATCA
chr20	39837622	39837623	chr20:39837623:T:C	rs12624742	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr20	39881085	39881086	chr20:39881086:G:T	rs564888656	G	T	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr20	39982232	39982233	chr20:39982233:C:T	rs17230825	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	40265909	40265910	chr20:40265910:A:G	rs6028999	A	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr20	40266145	40266146	chr20:40266146:A:G	rs6071994	A	G	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr20	40415317	40415318	chr20:40415318:T:C	rs117293977	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	40617134	40617135	chr20:40617135:A:G	rs926663	A	G	A	Hoxa9_MA0594.1	7	1	+	7.415122238259951	0.512188564557031	CTCATCCATCA
chr20	40704405	40704406	chr20:40704406:A:G	chr20:40704406:A:G	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	40739656	40739657	chr20:40739657:T:G	rs3091920	T	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr20	40844151	40844152	chr20:40844152:G:A	rs2207308	G	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr20	41089826	41089827	chr20:41089827:C:A	rs115746652	C	A	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr20	41089840	41089841	chr20:41089841:T:C	rs73259882	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	41149920	41149921	chr20:41149921:C:G	rs767169450	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	41272641	41272642	chr20:41272642:C:T	rs6072322	C	T	c	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	41639930	41639931	chr20:41639931:G:A	rs756101230	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr20	41727707	41727708	chr20:41727708:C:G	rs111959700	C	G	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr20	42051989	42051990	chr20:42051990:G:A	rs8126372	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	42082745	42082746	chr20:42082746:A:C	rs3787279	A	C	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr20	42572803	42572804	chr20:42572804:A:C	rs62203789	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr20	43146229	43146230	chr20:43146230:C:T	rs6030669	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	43241196	43241197	chr20:43241197:T:C	rs35869119	T	C	T	Hoxa9_MA0594.1	0	1	+	8.431006454478752	10.97597179968702	TCAATAAATCA
chr20	43508043	43508044	chr20:43508044:C:A	rs6124568	C	A	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr20	43528596	43528597	chr20:43528597:C:T	rs2071972	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr20	43541213	43541214	chr20:43541214:A:G	rs117851581	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr20	43541686	43541687	chr20:43541687:C:T	rs1062943	C	T	C	Hoxa9_MA0594.1	9	1	+	7.163300618439317	4.5385873998550785	GCCATGTATCA
chr20	43681373	43681374	chr20:43681374:A:G	rs78141090	A	G	A	Hoxa9_MA0594.1	8	1	-	8.260841894848062	1.3875538447481728	ACCATCTATCA
chr20	43681377	43681378	chr20:43681378:A:G	rs433732	A	G	A	Hoxa9_MA0594.1	4	1	-	8.260841894848062	1.3520871155328416	ACCATCTATCA
chr20	43681400	43681401	chr20:43681401:G:C	rs62226207	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	43919189	43919190	chr20:43919190:A:C	rs6031225	A	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr20	44018243	44018244	chr20:44018244:T:C	rs80309232	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr20	44018598	44018599	chr20:44018599:C:T	rs116603077	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	44055227	44055228	chr20:44055228:C:T	rs8119935	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr20	44057052	44057053	chr20:44057053:C:T	rs6093922	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr20	44082779	44082780	chr20:44082780:G:A	rs6093932	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	44102162	44102163	chr20:44102163:C:T	rs6031384	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	44108088	44108089	chr20:44108089:A:C	rs2206633	A	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	44122394	44122395	chr20:44122395:T:C	rs2038168	T	C	C	Hoxa9_MA0594.1	3	1	-	8.00320666478695	5.021410237378092	CCCATAAATTT
chr20	44175385	44175386	chr20:44175386:A:G	rs6017281	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	44177456	44177457	chr20:44177457:A:G	rs41279276	A	G	A	Hoxa9_MA0594.1	3	1	+	7.378505182244407	4.396708754835548	CACATGAATCA
chr20	44208800	44208801	chr20:44208801:T:C	rs956609	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	44246166	44246167	chr20:44246167:G:A	rs141023858	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	44442708	44442709	chr20:44442709:C:T	rs58438406	C	T	C	Hoxa9_MA0594.1	9	1	+	7.581196251050087	4.956483032465848	GCCATAAAACT
chr20	45018003	45018004	chr20:45018004:T:C	rs2267859	T	C	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr20	45036348	45036349	chr20:45036349:G:A	rs1073256	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr20	45139891	45139892	chr20:45139892:T:C	rs6032016	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr20	45245822	45245823	chr20:45245823:C:T	rs59989008	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr20	45245827	45245828	chr20:45245828:C:T	rs56346511	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr20	45345096	45345097	chr20:45345097:G:T	rs2743389	G	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr20	45489279	45489280	chr20:45489280:G:C	rs112390434	G	C	g	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	45489324	45489325	chr20:45489325:A:G	rs73303898	A	G	a	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr20	45561563	45561564	chr20:45561564:G:A	rs6017620	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr20	45601652	45601653	chr20:45601653:C:A	rs2206449	C	A	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	45976182	45976183	chr20:45976183:G:A	rs7275164	G	A	G	Hoxa9_MA0594.1	2	1	-	9.632353768761673	7.712022685634453	ACCATCAATCT
chr20	46048408	46048409	chr20:46048409:T:C	rs142681224	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr20	46060090	46060091	chr20:46060091:G:A	rs2664528	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	46092886	46092887	chr20:46092887:C:A	rs4410345	C	A	A	Hoxa9_MA0594.1	5	1	+	8.577208198357003	9.130625221022317	GCTATCAATCT
chr20	46092900	46092901	chr20:46092901:C:T	rs4812991	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr20	46176798	46176799	chr20:46176799:G:T	rs6065936	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	46369116	46369117	chr20:46369117:G:A	rs41307161	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr20	46583980	46583981	chr20:46583981:T:C	rs863675	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr20	46802823	46802824	chr20:46802824:G:A	rs116323576	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr20	46802825	46802826	chr20:46802826:A:G	rs947079	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	46811407	46811408	chr20:46811408:A:G	rs182752834	A	G	A	Hoxa9_MA0594.1	10	1	+	8.027829768240773	1.391056782488004	CTCATCAATTA
chr20	46850580	46850581	chr20:46850581:T:G	rs77331270	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr20	46870450	46870451	chr20:46870451:A:G	rs6124879	A	G	G	Hoxa9_MA0594.1	3	1	+	10.60021510825185	7.618418680842992	GCTATAAATCA
chr20	47088558	47088559	chr20:47088559:C:T	rs142881808	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	47099525	47099526	chr20:47099526:C:A	rs6018272	C	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	47169234	47169235	chr20:47169235:T:C	rs3091653	T	C	T	Hoxa9_MA0594.1	3	1	-	7.877589431813438	4.895793004404579	TCAATCAATCA
chr20	47274692	47274693	chr20:47274693:A:G	rs3810525	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr20	47274717	47274718	chr20:47274718:A:C	rs188712057	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr20	47599922	47599923	chr20:47599923:G:A	rs2143491	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	47817669	47817670	chr20:47817670:G:A	rs34015982	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	47909265	47909266	chr20:47909266:A:G	rs916351	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr20	47928232	47928233	chr20:47928233:G:A	rs6018803	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	47944949	47944950	chr20:47944950:G:A	rs8115182	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr20	48149995	48149996	chr20:48149996:C:T	rs911954	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr20	48150000	48150001	chr20:48150001:G:A	rs6094990	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr20	48234086	48234087	chr20:48234087:G:A	rs376852	G	A	G	Hoxa9_MA0594.1	3	1	-	8.038914744234518	5.12439252610607	GCCCTCAATCA
chr20	48262498	48262499	chr20:48262499:T:C	rs226810	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr20	48299124	48299125	chr20:48299125:T:C	rs150534660	T	C	T	Hoxa9_MA0594.1	7	1	-	7.173729231511967	0.27079555780904707	ACCCTCAATCA
chr20	48403683	48403684	chr20:48403684:A:G	rs4141796	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr20	48485981	48485982	chr20:48485982:C:G	rs1407993477	C	G	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr20	48546246	48546247	chr20:48546247:A:C	rs1810513	A	C	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	48633052	48633053	chr20:48633053:T:C	rs4810846	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	48846160	48846161	chr20:48846161:C:G	rs71351945	C	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	49038026	49038027	chr20:49038027:C:G	rs927160	C	G	C	Hoxa9_MA0594.1	5	1	-	7.66103487567689	9.623761664808185	CCTATGAATCA
chr20	49510638	49510639	chr20:49510639:T:C	rs729824	T	C	c	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr20	49542367	49542368	chr20:49542368:C:G	rs6012689	C	G	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr20	49604921	49604922	chr20:49604922:T:C	rs235019	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr20	49604960	49604961	chr20:49604961:C:T	rs384897	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	49607941	49607942	chr20:49607942:A:G	rs235002	A	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr20	49699489	49699490	chr20:49699490:C:T	rs4810976	C	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	49709217	49709218	chr20:49709218:G:A	rs1927781	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	49718981	49718982	chr20:49718982:C:A	rs35854666	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr20	49917765	49917766	chr20:49917766:A:G	rs3761177	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr20	50034053	50034054	chr20:50034054:G:A	rs1329551860	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	50293129	50293130	chr20:50293130:C:T	rs6020423	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	50423207	50423208	chr20:50423208:C:T	rs112002358	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	50423228	50423229	chr20:50423229:A:G	rs532011573	A	G	A	Hoxa9_MA0594.1	4	1	-	8.66099466428206	1.7522398849668381	TTCATAAATCA
chr20	50427883	50427884	chr20:50427884:G:A	rs1038568585	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr20	50454106	50454107	chr20:50454107:G:A	rs75994450	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr20	50511247	50511248	chr20:50511248:A:G	rs3787333	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr20	50541786	50541787	chr20:50541787:T:C	rs112213217	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	50546821	50546822	chr20:50546822:G:A	rs141749623	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	50561532	50561533	chr20:50561533:G:A	rs75223039	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	50716543	50716544	chr20:50716544:T:C	rs6512665	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr20	50802227	50802228	chr20:50802228:C:T	rs76487450	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr20	50914020	50914021	chr20:50914021:T:C	rs112000943	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr20	51072754	51072755	chr20:51072755:T:C	rs12481456	T	C	t	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	51105440	51105441	chr20:51105441:G:C	rs8122161	G	C	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	51123322	51123323	chr20:51123323:G:A	rs230014	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr20	51183740	51183741	chr20:51183741:C:A	rs2426275	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	51351575	51351576	chr20:51351576:G:A	rs192663103	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr20	51423548	51423549	chr20:51423549:A:G	rs6067766	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	51464722	51464723	chr20:51464723:T:C	rs628672	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	51464724	51464725	chr20:51464725:G:C	rs6096441	G	C	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	51488326	51488327	chr20:51488327:C:T	rs11086340	C	T	T	Hoxa9_MA0594.1	1	1	+	7.994175372278161	7.102625611167765	CCAGTAAATCA
chr20	51543495	51543496	chr20:51543496:G:A	rs4811191	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr20	51631642	51631643	chr20:51631643:G:A	chr20:51631643:G:A	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr20	51673507	51673508	chr20:51673508:G:A	rs6096523	G	A	-	Hoxa9_MA0594.1	28	0	+	0	0	.
chr20	51923559	51923560	chr20:51923560:G:T	rs62226919	G	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	51923589	51923590	chr20:51923590:A:C	rs2904144	A	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	52347274	52347275	chr20:52347275:G:C	rs140989350	G	C	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr20	52427107	52427108	chr20:52427108:C:T	rs4811352	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	52471705	52471706	chr20:52471706:G:A	rs6096969	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	52595323	52595324	chr20:52595324:A:G	rs12479995	A	G	A	Hoxa9_MA0594.1	0	1	+	8.899082879431504	9.764268392154055	AACATCAATCA
chr20	52748352	52748353	chr20:52748353:C:T	rs73910942	C	T	C	Hoxa9_MA0594.1	2	1	+	7.075594521334054	5.155263438206831	GCCGTAAATCC
chr20	52938301	52938302	chr20:52938302:T:C	rs78596521	T	C	T	Hoxa9_MA0594.1	3	1	-	9.634354527964561	6.652558100555703	CCCATAAATCC
chr20	53023989	53023990	chr20:53023990:C:G	rs144664219	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr20	53028439	53028440	chr20:53028440:C:T	rs777629124	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr20	53028474	53028475	chr20:53028475:C:T	rs1021207305	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	53032484	53032485	chr20:53032485:G:A	rs6126730	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr20	53131238	53131239	chr20:53131239:G:T	rs73914920	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	53146304	53146305	chr20:53146305:G:A	rs75091799	G	A	G	Hoxa9_MA0594.1	5	1	-	7.864522907426146	5.444383900096458	ACCATCCATCA
chr20	53171296	53171297	chr20:53171297:A:G	rs73911214	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	53194846	53194847	chr20:53194847:G:A	rs1296358	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	53296456	53296457	chr20:53296457:C:T	rs200633	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr20	53370771	53370772	chr20:53370772:A:G	rs6091666	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr20	53489102	53489103	chr20:53489103:A:G	rs762374800	A	G	A	Hoxa9_MA0594.1	7	1	+	7.877589431813438	0.9746557581105182	TCAATCAATCA
chr20	53514429	53514430	chr20:53514430:A:G	rs7274962	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	53789587	53789588	chr20:53789588:T:A	rs6013797	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr20	53806016	53806017	chr20:53806017:G:C	rs920127076	G	C	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	53827061	53827062	chr20:53827062:C:T	rs113186105	C	T	C	Hoxa9_MA0594.1	0	1	-	8.88286440866876	8.01767889594621	GCAATGAATCA
chr20	53828452	53828453	chr20:53828453:G:A	rs75388259	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	53921933	53921934	chr20:53921934:A:G	rs6068723	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr20	53949119	53949120	chr20:53949120:G:A	rs62206656	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	53958506	53958507	chr20:53958507:C:T	rs6091794	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	53960433	53960434	chr20:53960434:T:G	rs80322891	T	G	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	54067590	54067591	chr20:54067591:C:A	rs55973940	C	A	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	54123561	54123562	chr20:54123562:G:A	rs188484185	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	54149655	54149656	chr20:54149656:T:C	rs2762929	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr20	54308581	54308582	chr20:54308582:G:A	rs1293137	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr20	54711083	54711084	chr20:54711084:C:A	rs6068966	C	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr20	54793771	54793772	chr20:54793772:G:T	rs6127281	G	T	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr20	54843654	54843655	chr20:54843655:G:A	rs6069006	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr20	55173849	55173850	chr20:55173850:C:T	rs12329514	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr20	55205784	55205785	chr20:55205785:C:T	rs6127430	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	55253852	55253853	chr20:55253853:G:A	rs139865396	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	55479133	55479134	chr20:55479134:A:G	rs75302389	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr20	56141828	56141829	chr20:56141829:A:G	rs6127649	A	G	G	Hoxa9_MA0594.1	4	1	-	10.422554777021706	3.513799997706486	CCAATCAATCA
chr20	56238007	56238008	chr20:56238008:T:G	rs80345770	T	G	T	Hoxa9_MA0594.1	10	1	+	7.6696269796303795	2.502443881107144	ACCATGAATCT
chr20	56289852	56289853	chr20:56289853:G:A	rs113688109	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	56413015	56413016	chr20:56413016:C:T	rs73156368	C	T	C	Hoxa9_MA0594.1	2	1	+	9.112852618472068	7.192521535344844	GTCATGAATCA
chr20	56441305	56441306	chr20:56441306:C:A	rs114789244	C	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	56496582	56496583	chr20:56496583:A:G	rs6069763	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr20	56689794	56689795	chr20:56689795:G:A	rs6064438	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr20	56756214	56756215	chr20:56756215:G:C	rs6025138	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr20	56810187	56810188	chr20:56810188:G:A	rs6069890	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	56898144	56898145	chr20:56898145:T:C	rs6092381	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	57041122	57041123	chr20:57041123:C:T	rs6025330	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	57097579	57097580	chr20:57097580:G:A	rs6069985	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr20	57234821	57234822	chr20:57234822:C:T	rs456554	C	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr20	57288303	57288304	chr20:57288304:A:G	rs187632082	A	G	A	Hoxa9_MA0594.1	7	1	+	12.520546191379072	5.617612517676153	GCCATAAATCA
chr20	57397277	57397278	chr20:57397278:C:T	rs117234321	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr20	57506231	57506232	chr20:57506232:A:C	rs62206177	A	C	A	Hoxa9_MA0594.1	8	1	-	8.655440400273676	3.700544470335207	GTCATTAATCA
chr20	57585293	57585294	chr20:57585294:C:T	rs2064393	C	T	c	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	57638129	57638130	chr20:57638130:T:C	rs62204287	T	C	T	Hoxa9_MA0594.1	2	1	-	7.375831144700604	1.9734691278659673	GCAATCAAACA
chr20	57654013	57654014	chr20:57654014:A:C	rs138353982	A	C	A	Hoxa9_MA0594.1	10	1	+	9.050786138279621	6.58763089564346	GCCATAAAACA
chr20	57684242	57684243	chr20:57684243:A:G	rs114539186	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr20	57813970	57813971	chr20:57813971:G:A	rs962814	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr20	57919852	57919853	chr20:57919853:G:T	rs73915166	G	T	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr20	57995784	57995785	chr20:57995785:A:G	rs10485811	A	G	A	Hoxa9_MA0594.1	3	1	+	8.51281655705086	5.531020129642001	CCAATAAATCC
chr20	57995788	57995789	chr20:57995789:A:G	rs10485812	A	G	A	Hoxa9_MA0594.1	7	1	+	8.51281655705086	1.6098828833479393	CCAATAAATCC
chr20	58075949	58075950	chr20:58075950:T:C	rs6015183	T	C	t	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr20	58082055	58082056	chr20:58082056:T:C	rs113581335	T	C	t	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr20	58167800	58167801	chr20:58167801:T:C	rs74639209	T	C	T	Hoxa9_MA0594.1	10	1	-	7.877589431813438	1.240816446060669	TCAATCAATCA
chr20	58227077	58227078	chr20:58227078:G:A	rs561761	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr20	58229231	58229232	chr20:58229232:T:C	rs79188559	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr20	58242282	58242283	chr20:58242283:G:A	rs62205862	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr20	58407612	58407613	chr20:58407613:G:A	rs4239679	G	A	A	Hoxa9_MA0594.1	1	1	-	9.895832972794834	9.00428321168444	GCCATAAATTA
chr20	58449532	58449533	chr20:58449533:C:T	rs6015275	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	58634631	58634632	chr20:58634632:G:A	rs74991065	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr20	58647669	58647670	chr20:58647670:G:A	rs75539795	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr20	58670048	58670049	chr20:58670049:C:A	rs76661424	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr20	58670050	58670051	chr20:58670051:C:T	rs6100158	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	58716413	58716414	chr20:58716414:G:A	rs935930635	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr20	58756371	58756372	chr20:58756372:C:T	rs6026493	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	58972889	58972890	chr20:58972890:A:G	rs6064731	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr20	59274228	59274229	chr20:59274229:G:A	rs6100395	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr20	59406084	59406085	chr20:59406085:A:C	rs76875063	A	C	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr20	59406098	59406099	chr20:59406099:A:G	rs78235940	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr20	59528825	59528826	chr20:59528826:C:T	rs2865740	C	T	T	Hoxa9_MA0594.1	1	1	+	7.608170449234994	6.716620688124598	GCAATCCATCA
chr20	60137421	60137422	chr20:60137422:C:A	rs6027337	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr20	60339810	60339811	chr20:60339811:A:G	rs354744	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr20	60695698	60695699	chr20:60695699:A:G	rs2426887	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr20	60695723	60695724	chr20:60695724:A:G	rs2426888	A	G	G	Hoxa9_MA0594.1	4	1	-	10.422554777021706	3.513799997706486	CCAATCAATCA
chr20	61045494	61045495	chr20:61045495:A:G	rs6015907	A	G	A	Hoxa9_MA0594.1	3	1	+	9.080937505299248	6.099141077890389	CCCATCAATCC
chr20	61076298	61076299	chr20:61076299:C:T	rs749247	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	61103402	61103403	chr20:61103403:C:T	rs4812270	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr20	61133537	61133538	chr20:61133538:C:G	rs6065055	C	G	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	61399693	61399694	chr20:61399694:C:A	rs73314693	C	A	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	61399698	61399699	chr20:61399699:G:A	rs77586166	G	A	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	61516642	61516643	chr20:61516643:A:G	rs2427159	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr20	61555701	61555702	chr20:61555702:T:C	rs1936203	T	C	t	Hoxa9_MA0594.1	13	0	-	0	0	.
chr20	61589117	61589118	chr20:61589118:T:C	rs6089241	T	C	T	Hoxa9_MA0594.1	7	1	-	8.773111023127315	1.8701773494243947	CAAATAAATCA
chr20	61608558	61608559	chr20:61608559:T:A	rs73917304	T	A	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr20	61731442	61731443	chr20:61731443:G:A	rs117645363	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr20	61860546	61860547	chr20:61860547:G:A	rs34825096	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr20	61900344	61900345	chr20:61900345:A:G	rs13037572	A	G	-	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr20	61999159	61999160	chr20:61999160:C:T	rs2296083	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	62050344	62050345	chr20:62050345:G:T	rs35683654	G	T	g	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	62352958	62352959	chr20:62352959:C:A	rs1056301778	C	A	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr20	62352988	62352989	chr20:62352989:G:A	rs2427298	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr20	62460929	62460930	chr20:62460930:G:C	rs8125995	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr20	62548602	62548603	chr20:62548603:C:A	rs60640728	C	A	c	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	62548631	62548632	chr20:62548632:T:C	rs6089754	T	C	c	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr20	62557229	62557230	chr20:62557230:T:C	rs6062237	T	C	c	Hoxa9_MA0594.1	10	1	-	7.929248167365919	1.29247518161315	GCAATAAAACA
chr20	62575735	62575736	chr20:62575736:C:T	rs6143054	C	T	c	Hoxa9_MA0594.1	10	1	+	9.634354527964561	10.627919883371188	CCCATAAATCC
chr20	62675277	62675278	chr20:62675278:T:C	rs4809477	T	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr20	62675278	62675279	chr20:62675279:G:A	rs34555756	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr20	62685130	62685131	chr20:62685131:T:C	rs11696171	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr20	62685131	62685132	chr20:62685132:G:A	rs532962409	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr20	62724915	62724916	chr20:62724916:T:C	rs2427417	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	62737853	62737854	chr20:62737854:G:A	rs111389602	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr20	62845824	62845825	chr20:62845825:T:C	rs57610632	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr20	62935753	62935754	chr20:62935754:T:C	rs147998971	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr20	62964283	62964284	chr20:62964284:C:T	rs2248900	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr20	62991361	62991362	chr20:62991362:G:A	rs4809267	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr20	63032279	63032280	chr20:63032280:G:A	rs6090203	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr20	63032297	63032298	chr20:63032298:T:C	rs6062775	T	C	C	Hoxa9_MA0594.1	4	1	+	7.415122238259951	0.5063674589447316	CTCATCCATCA
chr20	63034568	63034569	chr20:63034569:C:T	rs1060489	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr20	63098573	63098574	chr20:63098574:A:C	rs6011611	A	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr20	63491676	63491677	chr20:63491677:T:G	rs4809575	T	G	t	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	63497226	63497227	chr20:63497227:T:C	rs1741618	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr20	63497227	63497228	chr20:63497228:G:T	chr20:63497228:G:T	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr20	63533781	63533782	chr20:63533782:G:A	rs6011882	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr20	63639576	63639577	chr20:63639577:C:A	rs909334	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr20	63756741	63756742	chr20:63756742:G:A	rs6011084	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr20	64166519	64166520	chr20:64166520:C:T	rs398111	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr20	64231085	64231086	chr20:64231086:A:C	rs3003144	A	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr21	6370029	6370030	chr21:6370030:G:A	rs1380260564	G	A	.	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr21	6370072	6370073	chr21:6370073:A:G	rs1268614609	A	G	.	Hoxa9_MA0594.1	24	0	+	0	0	.
chr21	7924992	7924993	chr21:7924993:G:C	rs1464794495	G	C	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr21	8989351	8989352	chr21:8989352:T:A	rs796230371	T	A	.	Hoxa9_MA0594.1	8	1	+	9.708665347141455	6.238905294042002	GTTATAAATCA
chr21	8994008	8994009	chr21:8994009:C:A	rs35515828	C	A	.	Hoxa9_MA0594.1	9	1	+	10.763810917546127	7.695981084650036	ATCATAAATCA
chr21	8994028	8994029	chr21:8994029:T:A	rs71186716	T	A	.	Hoxa9_MA0594.1	29	0	+	0	0	.
chr21	8994245	8994246	chr21:8994246:G:T	rs34698644	G	T	.	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr21	8997295	8997296	chr21:8997296:A:C	rs74564056	A	C	.	Hoxa9_MA0594.1	28	0	+	0	0	.
chr21	8997296	8997297	chr21:8997297:C:T	rs796884077	C	T	.	Hoxa9_MA0594.1	29	0	+	0	0	.
chr21	9005195	9005196	chr21:9005196:A:G	chr21:9005196:A:G	A	G	.	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr21	9005218	9005219	chr21:9005219:A:C	rs77142453	A	C	.	Hoxa9_MA0594.1	3	1	+	10.074502860705875	6.146288436226634	CCCATCAATCT
chr21	9005219	9005220	chr21:9005220:T:C	rs74708827	T	C	.	Hoxa9_MA0594.1	4	1	+	10.074502860705875	3.1657480813906536	CCCATCAATCT
chr21	9005234	9005235	chr21:9005235:C:T	rs1406915761	C	T	.	Hoxa9_MA0594.1	19	0	+	0	0	.
chr21	9010672	9010673	chr21:9010673:T:C	rs372023702	T	C	.	Hoxa9_MA0594.1	7	1	-	11.050956304149539	4.1480226304466195	GCCATAAATCT
chr21	9731569	9731570	chr21:9731570:G:A	rs1044823845	G	A	.	Hoxa9_MA0594.1	16	0	+	0	0	.
chr21	9942839	9942840	chr21:9942840:A:C	rs78348618	A	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr21	9942859	9942860	chr21:9942860:G:A	rs867449292	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr21	10021207	10021208	chr21:10021208:T:C	rs867112965	T	C	.	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr21	10401136	10401137	chr21:10401137:G:A	rs61621797	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr21	10752837	10752838	chr21:10752838:A:G	rs112861025	A	G	.	Hoxa9_MA0594.1	11	0	+	0	0	.
chr21	13409376	13409377	chr21:13409377:C:A	chr21:13409377:C:A	C	A	.	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr21	14027542	14027543	chr21:14027543:T:C	rs2298673	T	C	N	Hoxa9_MA0594.1	20	0	-	0	0	.
chr21	14092328	14092329	chr21:14092329:G:A	rs58025195	G	A	-	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr21	14092339	14092340	chr21:14092340:G:A	rs56964975	G	A	-	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr21	14103193	14103194	chr21:14103194:T:C	rs1974407	T	C	c	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr21	14114256	14114257	chr21:14114257:A:G	rs13050849	A	G	a	Hoxa9_MA0594.1	11	0	+	0	0	.
chr21	14362329	14362330	chr21:14362330:G:A	rs73892152	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr21	14490353	14490354	chr21:14490354:C:G	rs2822702	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr21	14514294	14514295	chr21:14514295:T:C	rs2822711	T	C	C	Hoxa9_MA0594.1	1	1	+	10.159406543039145	11.050956304149539	GTCATAAATCT
chr21	14532070	14532071	chr21:14532071:G:C	rs143504308	G	C	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr21	14902165	14902166	chr21:14902166:T:G	rs1002458	T	G	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr21	15060416	15060417	chr21:15060417:T:C	rs62221393	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr21	15211415	15211416	chr21:15211416:A:G	rs2823146	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr21	15224115	15224116	chr21:15224116:A:C	rs2823174	A	C	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr21	15438157	15438158	chr21:15438158:T:C	rs114162544	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr21	16417890	16417891	chr21:16417891:T:C	rs9984548	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr21	16580240	16580241	chr21:16580241:T:C	rs17210190	T	C	T	Hoxa9_MA0594.1	3	1	-	7.536004637837573	4.554208210428715	GCCATAACTCA
chr21	16870328	16870329	chr21:16870329:T:C	rs73388340	T	C	T	Hoxa9_MA0594.1	4	1	+	9.552544425392455	2.6437896460772334	TCCATAAATCA
chr21	16910444	16910445	chr21:16910445:C:T	rs2824115	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr21	17304958	17304959	chr21:17304959:T:C	rs62241465	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr21	17350427	17350428	chr21:17350428:T:G	chr21:17350428:T:G	T	G	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr21	17504089	17504090	chr21:17504090:C:A	rs2776067	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr21	18118509	18118510	chr21:18118510:A:G	rs2824635	A	G	A	Hoxa9_MA0594.1	7	1	+	10.763810917546127	3.8608772438432064	ATCATAAATCA
chr21	18118978	18118979	chr21:18118979:A:C	rs2824636	A	C	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr21	18118983	18118984	chr21:18118984:G:A	rs9976869	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr21	18493656	18493657	chr21:18493657:T:C	rs553722010	T	C	T	Hoxa9_MA0594.1	3	1	-	8.91937952935117	5.937583101942311	CCCATCAATTA
chr21	18493662	18493663	chr21:18493663:C:T	chr21:18493663:C:T	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr21	18588424	18588425	chr21:18588425:T:C	rs1735742	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr21	18714968	18714969	chr21:18714969:G:A	rs963638	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr21	18894456	18894457	chr21:18894457:G:A	rs416336	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr21	19119883	19119884	chr21:19119884:T:C	rs17179114	T	C	T	Hoxa9_MA0594.1	5	1	-	9.050786138279621	6.534642326483011	GCCATAAAACA
chr21	19228431	19228432	chr21:19228432:C:G	rs1001852214	C	G	C	Hoxa9_MA0594.1	1	1	+	9.552544425392455	6.493776463745492	TCCATAAATCA
chr21	19454964	19454965	chr21:19454965:T:G	rs2407125	T	G	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr21	20232646	20232647	chr21:20232647:T:C	rs77166517	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr21	20260012	20260013	chr21:20260013:A:C	rs1475574	A	C	A	Hoxa9_MA0594.1	3	1	+	11.205960009490326	7.277745585011086	CTCATAAATCA
chr21	20417351	20417352	chr21:20417352:C:G	rs11088803	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr21	20545574	20545575	chr21:20545575:A:G	rs2826377	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr21	20649017	20649018	chr21:20649018:A:G	rs172962	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr21	21001000	21001001	chr21:21001001:A:T	rs73228134	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr21	21464953	21464954	chr21:21464954:A:G	rs116767608	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr21	21491129	21491130	chr21:21491130:A:G	chr21:21491130:A:G	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr21	21952686	21952687	chr21:21952687:G:A	rs2827151	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr21	22692003	22692004	chr21:22692004:C:T	rs73330093	C	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr21	23004068	23004069	chr21:23004069:T:A	rs2827789	T	A	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr21	23021219	23021220	chr21:23021220:A:G	rs244271	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr21	23418015	23418016	chr21:23418016:C:G	rs2828134	C	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr21	23607578	23607579	chr21:23607579:A:G	rs2828325	A	G	A	Hoxa9_MA0594.1	7	1	+	10.60021510825185	3.6972814345489304	GCTATAAATCA
chr21	24027643	24027644	chr21:24027644:A:G	rs2828713	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr21	24742872	24742873	chr21:24742873:T:A	rs2829312	T	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr21	25255943	25255944	chr21:25255944:C:T	rs2829669	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr21	25382531	25382532	chr21:25382532:G:A	rs66569025	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr21	25382556	25382557	chr21:25382557:G:A	rs66800260	G	A	A	Hoxa9_MA0594.1	0	1	-	9.080937505299248	6.53597216009098	CCCATCAATCC
chr21	25423080	25423081	chr21:25423081:G:T	rs2829740	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr21	25428765	25428766	chr21:25428766:G:C	rs2829749	G	C	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr21	25428810	25428811	chr21:25428811:G:T	rs8130581	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr21	25606637	25606638	chr21:25606638:A:G	rs3989369	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr21	25607239	25607240	chr21:25607240:A:G	rs896402108	A	G	A	Hoxa9_MA0594.1	7	1	+	9.472796552016483	2.5698628783135637	CCCATAAATTA
chr21	25807389	25807390	chr21:25807390:C:G	rs9982087	C	G	c	Hoxa9_MA0594.1	22	0	-	0	0	.
chr21	25885832	25885833	chr21:25885833:C:T	rs2242683	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr21	25903826	25903827	chr21:25903827:C:T	rs1039965699	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr21	25936989	25936990	chr21:25936990:A:G	chr21:25936990:A:G	A	G	A	Hoxa9_MA0594.1	8	1	-	9.196147443905666	2.322859393805776	GAAATAAATCA
chr21	25939573	25939574	chr21:25939574:A:G	rs80155566	A	G	A	Hoxa9_MA0594.1	7	1	+	8.73221190369779	1.8292782299948702	CTTATCAATCA
chr21	25954662	25954663	chr21:25954663:A:G	rs45537238	A	G	G	Hoxa9_MA0594.1	3	1	+	11.205960009490326	8.224163582081468	CTCATAAATCA
chr21	25957628	25957629	chr21:25957629:A:G	rs73336796	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr21	26238886	26238887	chr21:26238887:A:G	rs2830136	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr21	26262992	26262993	chr21:26262993:T:G	rs469641	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr21	26297896	26297897	chr21:26297897:A:G	rs414477	A	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr21	26493100	26493101	chr21:26493101:C:T	rs219628	C	T	T	Hoxa9_MA0594.1	1	1	+	8.557906459322226	7.666356698211828	GCAATATATCA
chr21	26571815	26571816	chr21:26571816:G:A	rs222978	G	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr21	26571831	26571832	chr21:26571832:G:A	rs67851275	G	A	G	Hoxa9_MA0594.1	0	1	+	9.050786138279621	8.18560062555707	GCCATAAAACA
chr21	26659161	26659162	chr21:26659162:G:A	rs120262	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr21	26708608	26708609	chr21:26708609:A:G	rs181183039	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr21	26799917	26799918	chr21:26799918:A:G	rs7282063	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr21	26838337	26838338	chr21:26838338:T:C	rs229042	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr21	26843299	26843300	chr21:26843300:T:C	rs422381	T	C	T	Hoxa9_MA0594.1	7	1	-	9.08885592396711	2.18592225026419	ATAATCAATCA
chr21	26871845	26871846	chr21:26871846:C:T	rs115637690	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr21	26871891	26871892	chr21:26871892:C:T	rs60329675	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr21	26934853	26934854	chr21:26934854:C:T	rs162495	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr21	27047907	27047908	chr21:27047908:A:G	rs115181066	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr21	27113658	27113659	chr21:27113659:T:C	rs2830703	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr21	27196772	27196773	chr21:27196773:C:T	rs34647816	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr21	27645388	27645389	chr21:27645389:G:A	rs9976476	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr21	28035191	28035192	chr21:28035192:G:A	rs62209735	G	A	a	Hoxa9_MA0594.1	23	0	+	0	0	.
chr21	28131776	28131777	chr21:28131777:G:A	rs8133978	G	A	a	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr21	28200823	28200824	chr21:28200824:C:T	rs9305361	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr21	28224529	28224530	chr21:28224530:G:T	rs2831668	G	T	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr21	28305710	28305711	chr21:28305711:C:T	rs9976415	C	T	c	Hoxa9_MA0594.1	21	0	-	0	0	.
chr21	28537896	28537897	chr21:28537897:T:A	rs141406159	T	A	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr21	28657788	28657789	chr21:28657789:A:G	rs62224132	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr21	28672026	28672027	chr21:28672027:G:A	rs9984823	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr21	28770071	28770072	chr21:28770072:C:T	rs8134500	C	T	C	Hoxa9_MA0594.1	1	1	+	8.034113823095115	7.1425640619847215	ACCATCAATAA
chr21	28910690	28910691	chr21:28910691:A:G	rs79740640	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr21	29076758	29076759	chr21:29076759:A:T	rs577569228	A	T	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr21	29118905	29118906	chr21:29118906:T:A	rs9983651	T	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr21	29175441	29175442	chr21:29175442:A:C	rs111346630	A	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr21	29386244	29386245	chr21:29386245:A:G	rs8127778	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr21	29508493	29508494	chr21:29508494:T:G	chr21:29508494:T:G	T	G	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr21	29646449	29646450	chr21:29646450:G:T	rs743321	G	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr21	29647258	29647259	chr21:29647259:G:T	rs55838877	G	T	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr21	29892479	29892480	chr21:29892480:A:C	rs2300332	A	C	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr21	30028150	30028151	chr21:30028151:G:A	rs408264	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr21	30234192	30234193	chr21:30234193:T:C	rs2832668	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr21	30252000	30252001	chr21:30252001:T:A	rs12627158	T	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr21	30252025	30252026	chr21:30252026:A:G	rs2832709	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr21	30579659	30579660	chr21:30579660:G:A	rs198905	G	A	.	Hoxa9_MA0594.1	14	0	-	0	0	.
chr21	30579675	30579676	chr21:30579676:C:T	rs2832950	C	T	.	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr21	31151909	31151910	chr21:31151910:A:G	rs986253755	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr21	31364713	31364714	chr21:31364714:T:C	rs525896	T	C	T	Hoxa9_MA0594.1	7	1	-	8.99912740272714	2.0961937290242205	TCCATCAATCA
chr21	31374230	31374231	chr21:31374231:C:T	rs2300356	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr21	31733451	31733452	chr21:31733452:G:A	rs73201545	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr21	31853039	31853040	chr21:31853040:T:G	rs969592297	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr21	32055270	32055271	chr21:32055271:C:T	rs11911030	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr21	32371318	32371319	chr21:32371319:G:A	rs7283020	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr21	32393907	32393908	chr21:32393908:T:G	rs117007168	T	G	T	Hoxa9_MA0594.1	1	1	-	8.219694000462	10.422554777021706	CAAATCAATCA
chr21	32424283	32424284	chr21:32424284:C:T	rs73190656	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr21	32509504	32509505	chr21:32509505:A:G	rs9978838	A	G	a	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr21	32844952	32844953	chr21:32844953:G:A	rs2833975	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr21	32959990	32959991	chr21:32959991:G:A	rs73899857	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr21	33119677	33119678	chr21:33119678:A:G	rs724208	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr21	33238268	33238269	chr21:33238269:A:G	rs77078324	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr21	33642169	33642170	chr21:33642170:G:A	rs975950069	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr21	33642181	33642182	chr21:33642182:C:A	rs147791026	C	A	C	Hoxa9_MA0594.1	1	1	+	10.185770791426988	7.982910014867283	ACCATAAATCT
chr21	33684460	33684461	chr21:33684461:G:A	rs2834248	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr21	33982221	33982222	chr21:33982222:T:C	rs2032314	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr21	34543513	34543514	chr21:34543514:T:C	rs2284580	T	C	t	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr21	34559068	34559069	chr21:34559069:C:T	rs8130623	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr21	34732597	34732598	chr21:34732598:C:A	rs116143361	C	A	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr21	34814021	34814022	chr21:34814022:G:A	rs2834642	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr21	34874905	34874906	chr21:34874906:G:A	rs113529220	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr21	34874933	34874934	chr21:34874934:C:T	rs61658023	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr21	34992538	34992539	chr21:34992539:T:C	rs59680634	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr21	35067033	35067034	chr21:35067034:G:A	rs2156401	G	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr21	35395953	35395954	chr21:35395954:G:C	rs2242727	G	C	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr21	35520482	35520483	chr21:35520483:C:T	rs1627997	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr21	35525514	35525515	chr21:35525515:C:T	rs117263255	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr21	35525559	35525560	chr21:35525560:A:G	rs445984	A	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr21	35559619	35559620	chr21:35559620:G:A	rs75308374	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr21	35849175	35849176	chr21:35849176:T:C	rs741754	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr21	35989295	35989296	chr21:35989296:C:T	rs73367285	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr21	36173807	36173808	chr21:36173808:G:A	rs12482399	G	A	a	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr21	36337340	36337341	chr21:36337341:G:A	rs2835336	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr21	36337368	36337369	chr21:36337369:A:C	rs2835337	A	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr21	36377789	36377790	chr21:36377790:G:A	rs557053406	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr21	36454188	36454189	chr21:36454189:G:A	rs7283948	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr21	36454325	36454326	chr21:36454326:C:T	rs148163132	C	T	c	Hoxa9_MA0594.1	30	0	-	0	0	.
chr21	36487576	36487577	chr21:36487577:G:A	rs74933634	G	A	g	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr21	36499817	36499818	chr21:36499818:T:A	rs2000544	T	A	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr21	36510358	36510359	chr21:36510359:C:G	rs16994182	C	G	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr21	36551170	36551171	chr21:36551171:T:C	rs366381	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr21	36554196	36554197	chr21:36554197:T:C	rs451243	T	C	C	Hoxa9_MA0594.1	3	1	-	7.216289187599767	4.234492760190907	GCCATATATCC
chr21	36567311	36567312	chr21:36567312:G:A	rs140984138	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr21	36567476	36567477	chr21:36567477:G:C	rs445103	G	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr21	36675977	36675978	chr21:36675978:T:A	rs2835428	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr21	37155454	37155455	chr21:37155455:C:T	rs80347649	C	T	C	Hoxa9_MA0594.1	9	1	+	9.736370122260793	7.111656903676554	CTCATAAATCT
chr21	37550448	37550449	chr21:37550449:A:T	rs13050747	A	T	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr21	37550460	37550461	chr21:37550461:C:T	rs2835805	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr21	37803432	37803433	chr21:37803433:T:G	rs3787831	T	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr21	37850968	37850969	chr21:37850969:G:C	rs7364074	G	C	C	Hoxa9_MA0594.1	1	1	-	7.877589431813438	4.818821470166475	TCAATCAATCA
chr21	37869121	37869122	chr21:37869122:C:T	chr21:37869122:C:T	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr21	37869139	37869140	chr21:37869140:A:G	rs80314783	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr21	38175495	38175496	chr21:38175496:A:G	rs749006974	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr21	38255658	38255659	chr21:38255659:C:G	rs7275310	C	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr21	38277722	38277723	chr21:38277723:G:C	rs919151748	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr21	38303444	38303445	chr21:38303445:G:A	rs528202760	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr21	38447906	38447907	chr21:38447907:C:T	rs2836411	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr21	38520720	38520721	chr21:38520721:T:C	rs117780186	T	C	T	Hoxa9_MA0594.1	7	1	-	7.440758349612847	0.5378246759099272	CCAGTCAATCA
chr21	38679878	38679879	chr21:38679879:C:T	rs55983303	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr21	38714532	38714533	chr21:38714533:T:C	rs80335778	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr21	38748005	38748006	chr21:38748006:A:G	rs2836658	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr21	38808458	38808459	chr21:38808459:T:A	rs1209953	T	A	T	Hoxa9_MA0594.1	10	1	-	8.33117838756928	6.861588500339746	GCAATAAATAA
chr21	38808473	38808474	chr21:38808474:G:A	rs548863871	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr21	39022833	39022834	chr21:39022834:T:C	rs112986985	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr21	39175460	39175461	chr21:39175461:A:G	rs9305670	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr21	39202742	39202743	chr21:39202743:T:C	rs2150412	T	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr21	39272135	39272136	chr21:39272136:T:G	rs7283569	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr21	39312264	39312265	chr21:39312265:C:T	rs144840512	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr21	39319643	39319644	chr21:39319644:G:A	rs35784053	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr21	39472373	39472374	chr21:39472374:T:C	rs2178881	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr21	39484870	39484871	chr21:39484871:A:G	rs146244831	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr21	39519336	39519337	chr21:39519337:C:A	rs2837056	C	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr21	39531329	39531330	chr21:39531330:C:T	rs113036300	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr21	39751061	39751062	chr21:39751062:G:C	rs1882858	G	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr21	39768527	39768528	chr21:39768528:T:C	rs2837191	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr21	39791305	39791306	chr21:39791306:T:C	rs2837223	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr21	39920522	39920523	chr21:39920523:T:C	rs9978253	T	C	C	Hoxa9_MA0594.1	7	1	-	11.39900822046537	4.4960745467624506	GCAATAAATCA
chr21	39938445	39938446	chr21:39938446:C:G	rs2837309	C	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr21	39938473	39938474	chr21:39938474:G:A	rs142276583	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr21	40121103	40121104	chr21:40121104:G:C	rs116296570	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr21	40332776	40332777	chr21:40332777:T:A	rs2837571	T	A	T	Hoxa9_MA0594.1	8	1	+	8.034113823095115	4.564353769995664	ACCATCAATAA
chr21	40537333	40537334	chr21:40537334:G:A	rs11700429	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr21	40633745	40633746	chr21:40633746:T:C	rs67044568	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr21	40698500	40698501	chr21:40698501:G:T	rs146250206	G	T	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr21	40832227	40832228	chr21:40832228:T:C	rs2837846	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr21	41280789	41280790	chr21:41280790:C:T	rs8126886	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr21	41351044	41351045	chr21:41351045:T:A	rs77215024	T	A	T	Hoxa9_MA0594.1	7	1	-	11.205960009490326	4.303026335787407	CTCATAAATCA
chr21	41640908	41640909	chr21:41640909:G:C	rs13049373	G	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr21	41826824	41826825	chr21:41826825:G:A	rs28516731	G	A	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr21	41837593	41837594	chr21:41837594:G:C	rs8132615	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr21	41967102	41967103	chr21:41967103:C:T	rs57630204	C	T	C	Hoxa9_MA0594.1	2	1	+	8.476262915039317	6.555931831912094	CCCATCAATAA
chr21	41968808	41968809	chr21:41968809:A:G	rs73221467	A	G	a	Hoxa9_MA0594.1	27	0	-	0	0	.
chr21	42120290	42120291	chr21:42120291:G:A	rs189801595	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr21	42128128	42128129	chr21:42128129:T:C	rs2839470	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr21	42159233	42159234	chr21:42159234:G:T	rs9975104	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr21	42183625	42183626	chr21:42183626:A:G	rs111164019	A	G	g	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr21	42321515	42321516	chr21:42321516:G:A	rs73909017	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr21	42356068	42356069	chr21:42356069:A:G	rs541798	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr21	42356069	42356070	chr21:42356070:G:A	rs691587	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr21	42359294	42359295	chr21:42359295:C:A	rs8130158	C	A	c	Hoxa9_MA0594.1	18	0	+	0	0	.
chr21	42427787	42427788	chr21:42427788:C:T	rs75678806	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr21	42471346	42471347	chr21:42471347:G:A	rs4920110	G	A	G	Hoxa9_MA0594.1	6	1	-	7.738551051121958	8.134870038543875	CCAATACATCA
chr21	42471349	42471350	chr21:42471350:T:C	rs112703801	T	C	T	Hoxa9_MA0594.1	3	1	-	7.738551051121958	4.7567546237131	CCAATACATCA
chr21	42533024	42533025	chr21:42533025:G:C	rs117324463	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr21	42533026	42533027	chr21:42533027:T:C	rs145036036	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr21	42535191	42535192	chr21:42535192:G:A	rs76990677	G	A	G	Hoxa9_MA0594.1	1	1	+	8.908361207066799	9.764268392154055	GGCATCAATCA
chr21	42561182	42561183	chr21:42561183:G:A	rs74995205	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr21	42583357	42583358	chr21:42583358:G:A	rs366703	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr21	42956099	42956100	chr21:42956100:C:T	rs28751956	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr21	43311348	43311349	chr21:43311349:A:T	rs116960653	A	T	.	Hoxa9_MA0594.1	17	0	+	0	0	.
chr21	43363051	43363052	chr21:43363052:C:T	rs75411477	C	T	.	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr21	44445511	44445512	chr21:44445512:G:T	chr21:44445512:G:T	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr21	44592642	44592643	chr21:44592643:C:T	rs418260	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr21	44660679	44660680	chr21:44660680:C:G	rs12106369	C	G	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr21	44842705	44842706	chr21:44842706:G:A	rs9974306	G	A	G	Hoxa9_MA0594.1	1	1	-	8.899299335817666	8.007749574707272	GCCATCAATAA
chr21	44842775	44842776	chr21:44842776:T:A	rs2838702	T	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr21	45128217	45128218	chr21:45128218:G:A	rs2838789	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr21	45128928	45128929	chr21:45128929:A:T	rs187723201	A	T	A	Hoxa9_MA0594.1	3	1	+	8.477230437406968	1.634493794799281	ACCATCAATTA
chr21	45340623	45340624	chr21:45340624:A:G	rs111626429	A	G	-	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr21	45476574	45476575	chr21:45476575:T:G	rs79633299	T	G	T	Hoxa9_MA0594.1	3	1	-	8.41793993009146	4.48972550561222	ACCATACATCA
chr21	45873606	45873607	chr21:45873607:C:A	rs753092	C	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr21	46124140	46124141	chr21:46124141:A:G	rs58459980	A	G	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr21	46124278	46124279	chr21:46124279:A:G	rs1050901440	A	G	G	Hoxa9_MA0594.1	10	1	-	6.837082112140813	5.843516756734186	CCCATCCATCT
chr21	46124298	46124299	chr21:46124299:G:A	rs78179479	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr21	46144108	46144109	chr21:46144109:C:A	rs539688538	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr21	46432312	46432313	chr21:46432313:C:T	rs7283044	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr21	46560271	46560272	chr21:46560272:T:A	rs115076627	T	A	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr21	46627955	46627956	chr21:46627956:T:A	rs34038027	T	A	T	Hoxa9_MA0594.1	7	1	-	9.19220543602036	2.2892717623174414	ACCATAAATCC
chr22	10714596	10714597	chr22:10714597:G:C	rs1256627368	G	C	.	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr22	11034920	11034921	chr22:11034921:C:T	rs1192870143	C	T	.	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr22	11036707	11036708	chr22:11036708:C:T	rs1235584723	C	T	.	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr22	11597657	11597658	chr22:11597658:T:C	rs1348570683	T	C	.	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr22	12602721	12602722	chr22:12602722:G:T	rs1265440693	G	T	.	Hoxa9_MA0594.1	27	0	-	0	0	.
chr22	12602728	12602729	chr22:12602729:C:G	rs1241733845	C	G	.	Hoxa9_MA0594.1	20	0	-	0	0	.
chr22	12602767	12602768	chr22:12602768:G:A	rs1285010438	G	A	.	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr22	15919592	15919593	chr22:15919593:C:T	rs2844895	C	T	.	Hoxa9_MA0594.1	2	1	+	7.727146254177281	5.806815171050059	ACCCTAAATCA
chr22	16056291	16056292	chr22:16056292:A:C	rs1455768891	A	C	.	Hoxa9_MA0594.1	10	1	+	6.724328562345772	4.261173319709611	CTCCTCAATCA
chr22	16056305	16056306	chr22:16056306:G:A	rs1382921890	G	A	.	Hoxa9_MA0594.1	24	0	+	0	0	.
chr22	16699487	16699488	chr22:16699488:T:C	rs774724149	T	C	.	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr22	16825213	16825214	chr22:16825214:T:G	rs175140	T	G	.	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr22	16932704	16932705	chr22:16932705:A:C	rs5748747	A	C	c	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	17138401	17138402	chr22:17138402:C:T	rs740422	C	T	C	Hoxa9_MA0594.1	2	1	+	7.727146254177281	5.806815171050059	ACCCTAAATCA
chr22	17166971	17166972	chr22:17166972:T:G	rs5748923	T	G	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr22	17166988	17166989	chr22:17166989:C:T	rs5748924	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr22	17176487	17176488	chr22:17176488:C:T	rs2108582	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr22	17258145	17258146	chr22:17258146:G:C	rs9605248	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr22	17313078	17313079	chr22:17313079:A:G	rs5749032	A	G	A	Hoxa9_MA0594.1	3	1	+	7.20569632444339	4.223899897034531	GCTATCTATCA
chr22	17400524	17400525	chr22:17400525:G:C	rs28360596	G	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr22	17479398	17479399	chr22:17479399:T:C	rs5747200	T	C	C	Hoxa9_MA0594.1	4	1	+	7.036400613595844	0.12764583428062393	TCCATGAATCA
chr22	17673254	17673255	chr22:17673255:C:G	rs78611006	C	G	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr22	17833759	17833760	chr22:17833760:T:C	rs451840	T	C	C	Hoxa9_MA0594.1	1	1	+	9.08885592396711	9.980405685077507	ATAATCAATCA
chr22	17896873	17896874	chr22:17896874:C:T	rs61739477	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr22	17939054	17939055	chr22:17939055:C:A	rs7291304	C	A	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr22	17961312	17961313	chr22:17961313:A:G	rs28550912	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	18146552	18146553	chr22:18146553:A:G	rs361753	A	G	.	Hoxa9_MA0594.1	30	0	-	0	0	.
chr22	19129310	19129311	chr22:19129311:T:C	rs41277599	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr22	19171531	19171532	chr22:19171532:T:A	chr22:19171532:T:A	T	A	T	Hoxa9_MA0594.1	8	1	+	8.952964889792172	5.48320483669272	CCAATCAATCT
chr22	19385132	19385133	chr22:19385133:C:T	rs2013516	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr22	19406473	19406474	chr22:19406474:T:C	rs117784405	T	C	T	Hoxa9_MA0594.1	4	1	+	8.043175694344246	1.1344209150290259	AGCATCAATCA
chr22	19479362	19479363	chr22:19479363:T:C	rs5992403	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr22	19526373	19526374	chr22:19526374:C:T	rs16983833	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr22	19526406	19526407	chr22:19526407:G:A	rs2871029	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr22	19619868	19619869	chr22:19619869:G:A	rs191496354	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr22	19621133	19621134	chr22:19621134:A:G	rs13054962	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr22	19633487	19633488	chr22:19633488:C:T	rs1476445	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr22	19688418	19688419	chr22:19688419:G:A	rs562903237	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr22	19688420	19688421	chr22:19688421:G:T	rs1123657	G	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	19800212	19800213	chr22:19800213:C:T	rs748806	C	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	19879665	19879666	chr22:19879666:T:C	rs13054371	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr22	19892414	19892415	chr22:19892415:T:C	rs5993853	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr22	19994170	19994171	chr22:19994171:C:T	rs78859690	C	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr22	20013635	20013636	chr22:20013636:C:T	rs139570132	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	20198578	20198579	chr22:20198579:T:C	rs681112	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr22	20235117	20235118	chr22:20235118:G:A	rs9618757	G	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr22	20997891	20997892	chr22:20997892:T:C	rs178296	T	C	T	Hoxa9_MA0594.1	3	1	-	8.86008902203566	5.878292594626802	CCCATACATCA
chr22	21015735	21015736	chr22:21015736:G:A	rs885874	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr22	21579490	21579491	chr22:21579491:C:T	rs181366	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr22	21841116	21841117	chr22:21841117:T:C	rs9610400	T	C	t	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	21866525	21866526	chr22:21866526:T:C	rs5755745	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	21909762	21909763	chr22:21909763:A:C	rs240051	A	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr22	21909796	21909797	chr22:21909797:C:T	rs6000052	C	T	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr22	22168488	22168489	chr22:22168489:G:A	rs5757170	G	A	.	Hoxa9_MA0594.1	17	0	-	0	0	.
chr22	22196561	22196562	chr22:22196562:G:C	rs2282664	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr22	22480403	22480404	chr22:22480404:T:C	rs76062800	T	C	c	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	22569685	22569686	chr22:22569686:C:T	rs737891	C	T	c	Hoxa9_MA0594.1	25	0	-	0	0	.
chr22	22698281	22698282	chr22:22698282:G:T	rs5751516	G	T	.	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr22	22706898	22706899	chr22:22706899:C:T	rs5759390	C	T	.	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	22752750	22752751	chr22:22752751:A:G	rs73162903	A	G	.	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr22	22759069	22759070	chr22:22759070:G:T	rs4134484	G	T	.	Hoxa9_MA0594.1	0	1	-	11.205960009490326	10.763810917546127	CTCATAAATCA
chr22	22770257	22770258	chr22:22770258:T:C	rs149513398	T	C	.	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	22774553	22774554	chr22:22774554:C:G	rs140813290	C	G	.	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr22	22866094	22866095	chr22:22866095:T:G	rs73397113	T	G	.	Hoxa9_MA0594.1	17	0	-	0	0	.
chr22	22881238	22881239	chr22:22881239:G:A	rs61731686	G	A	.	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	22883814	22883815	chr22:22883815:A:G	rs5759503	A	G	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	22910914	22910915	chr22:22910915:A:T	rs116951779	A	T	.	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr22	23016439	23016440	chr22:23016440:T:C	rs9612207	T	C	t	Hoxa9_MA0594.1	3	1	-	9.929418333235837	6.947621905826979	GCAATAAATCT
chr22	23080703	23080704	chr22:23080704:T:C	rs3827315	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	23289613	23289614	chr22:23289614:T:C	rs2227939	T	C	C	Hoxa9_MA0594.1	8	1	+	8.034113823095115	1.160825772995227	ACCATCAATAA
chr22	23289635	23289636	chr22:23289636:T:C	rs62219796	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	23364523	23364524	chr22:23364524:A:T	rs73878693	A	T	N	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr22	23375122	23375123	chr22:23375123:T:C	rs5759746	T	C	t	Hoxa9_MA0594.1	7	1	-	6.650557341352815	-0.25237633235010476	ACCGTCAATCT
chr22	23375127	23375128	chr22:23375128:G:A	rs5759747	G	A	g	Hoxa9_MA0594.1	2	1	-	6.650557341352815	4.730226258225593	ACCGTCAATCT
chr22	23492252	23492253	chr22:23492253:T:C	rs131321	T	C	-	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	23513330	23513331	chr22:23513331:C:T	rs115426736	C	T	c	Hoxa9_MA0594.1	19	0	-	0	0	.
chr22	23513334	23513335	chr22:23513335:A:G	rs5759867	A	G	N	Hoxa9_MA0594.1	15	0	-	0	0	.
chr22	23541046	23541047	chr22:23541047:T:C	rs6003791	T	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	23550122	23550123	chr22:23550123:C:T	rs73157009	C	T	-	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	23588726	23588727	chr22:23588727:G:A	rs131432	G	A	.	Hoxa9_MA0594.1	24	0	-	0	0	.
chr22	23850040	23850041	chr22:23850041:T:A	rs77780227	T	A	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr22	23891984	23891985	chr22:23891985:A:G	rs738806	A	G	G	Hoxa9_MA0594.1	5	1	+	7.536004637837573	5.019860826040964	GCCATAACTCA
chr22	23914237	23914238	chr22:23914238:G:A	rs188817375	G	A	G	Hoxa9_MA0594.1	6	1	-	7.390499134806127	7.786818122228043	CCCATACATCT
chr22	23914241	23914242	chr22:23914242:G:A	rs574097848	G	A	G	Hoxa9_MA0594.1	2	1	-	7.390499134806127	5.470168051678904	CCCATACATCT
chr22	23915403	23915404	chr22:23915404:A:T	rs57687200	A	T	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr22	23925405	23925406	chr22:23925406:A:G	rs143180984	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr22	24037984	24037985	chr22:24037985:T:C	rs987445493	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr22	24330749	24330750	chr22:24330750:T:G	rs2298380	T	G	G	Hoxa9_MA0594.1	3	1	-	7.790254887551124	3.8620404630718834	ATCATTAATCA
chr22	24399795	24399796	chr22:24399796:G:A	rs58692909	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr22	24482835	24482836	chr22:24482836:T:C	rs5760446	T	C	t	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr22	24683957	24683958	chr22:24683958:G:A	rs5760575	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr22	24977778	24977779	chr22:24977779:T:C	rs117116327	T	C	T	Hoxa9_MA0594.1	7	1	-	8.33117838756928	1.4282447138663592	GCAATAAATAA
chr22	25110811	25110812	chr22:25110812:C:T	rs713989	C	T	C	Hoxa9_MA0594.1	1	1	+	9.139216866859913	8.247667105749517	ACCATGAATCA
chr22	25169711	25169712	chr22:25169712:G:T	rs61015661	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr22	25419990	25419991	chr22:25419991:G:C	rs185553809	G	C	g	Hoxa9_MA0594.1	24	0	-	0	0	.
chr22	25420024	25420025	chr22:25420025:G:C	rs190527597	G	C	g	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr22	25522741	25522742	chr22:25522742:A:G	rs680355	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr22	25736884	25736885	chr22:25736885:C:T	chr22:25736885:C:T	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr22	25739961	25739962	chr22:25739962:C:T	rs9608419	C	T	c	Hoxa9_MA0594.1	12	0	+	0	0	.
chr22	25773190	25773191	chr22:25773191:C:T	rs76875382	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr22	25773235	25773236	chr22:25773236:G:A	rs78365988	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	25881587	25881588	chr22:25881588:T:C	rs2285196	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr22	26069299	26069300	chr22:26069300:C:T	rs12628683	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr22	26234488	26234489	chr22:26234489:C:T	rs11703706	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr22	26234489	26234490	chr22:26234490:G:A	rs926920	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr22	26268086	26268087	chr22:26268087:A:C	rs137179	A	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	26437140	26437141	chr22:26437141:G:A	chr22:26437141:G:A	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr22	26462867	26462868	chr22:26462868:G:A	rs2285214	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	26684317	26684318	chr22:26684318:G:A	rs6005134	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr22	26684319	26684320	chr22:26684320:G:A	rs6005135	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr22	26790147	26790148	chr22:26790148:T:C	rs4820710	T	C	C	Hoxa9_MA0594.1	6	1	-	7.7868232361530945	0.9692224503974383	GGAATCAATCA
chr22	26888100	26888101	chr22:26888101:C:A	rs3233	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr22	26953270	26953271	chr22:26953271:T:G	rs966560	T	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr22	26989366	26989367	chr22:26989367:T:C	rs9608558	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr22	26989367	26989368	chr22:26989368:G:A	rs9608559	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr22	26989400	26989401	chr22:26989401:T:C	rs9613322	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr22	27022947	27022948	chr22:27022948:G:A	rs16983406	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr22	27163939	27163940	chr22:27163940:G:A	rs7287230	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr22	27194018	27194019	chr22:27194019:C:T	rs544376	C	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	27239290	27239291	chr22:27239291:C:T	rs140921593	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr22	27254903	27254904	chr22:27254904:G:T	rs117746070	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr22	27313480	27313481	chr22:27313481:T:C	rs116848662	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	27438538	27438539	chr22:27438539:A:G	rs999224	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	27456993	27456994	chr22:27456994:C:T	rs77233712	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr22	27487879	27487880	chr22:27487880:T:C	rs5762196	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	27614367	27614368	chr22:27614368:C:G	rs116884561	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	27617486	27617487	chr22:27617487:C:T	rs743254	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr22	27642388	27642389	chr22:27642389:A:G	rs134016	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr22	27671411	27671412	chr22:27671412:G:A	rs134087	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr22	27699649	27699650	chr22:27699650:G:C	rs78900253	G	C	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	27719509	27719510	chr22:27719510:C:T	rs80220843	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr22	28020558	28020559	chr22:28020559:C:G	rs3747141	C	G	c	Hoxa9_MA0594.1	2	1	+	7.2202263104641835	0.6963263227158432	CTCATGAATCT
chr22	28034963	28034964	chr22:28034964:A:T	rs73166782	A	T	A	Hoxa9_MA0594.1	7	1	+	8.689816197693718	1.7868825239907973	CTCATGAATCA
chr22	28349445	28349446	chr22:28349446:C:A	rs134504	C	A	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr22	28829777	28829778	chr22:28829778:T:C	chr22:28829778:T:C	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr22	28918910	28918911	chr22:28918911:T:C	rs469992	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr22	28931602	28931603	chr22:28931603:A:T	rs11912894	A	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	28958749	28958750	chr22:28958750:C:T	rs16986871	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr22	28958777	28958778	chr22:28958778:T:G	rs115099169	T	G	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr22	28958782	28958783	chr22:28958783:A:C	rs16986873	A	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr22	29145054	29145055	chr22:29145055:G:A	rs115384160	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	29202830	29202831	chr22:29202831:C:T	rs73399038	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	29240691	29240692	chr22:29240692:G:A	rs7284720	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr22	29478190	29478191	chr22:29478191:G:A	rs73156585	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	29524308	29524309	chr22:29524309:T:A	rs8140060	T	A	T	Hoxa9_MA0594.1	2	1	+	8.843479834418904	9.642272946632424	ATTATAAATCA
chr22	29555332	29555333	chr22:29555333:T:C	rs565768950	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr22	29636245	29636246	chr22:29636246:A:G	rs3940296	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	29668127	29668128	chr22:29668128:C:T	rs2252472	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr22	29669823	29669824	chr22:29669824:T:C	rs2530673	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	29707270	29707271	chr22:29707271:G:A	rs141447880	G	A	G	Hoxa9_MA0594.1	6	1	-	8.306671999370346	8.702990986792262	CCCATCCATCA
chr22	29728624	29728625	chr22:29728625:A:T	rs140096	A	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr22	29733554	29733555	chr22:29733555:A:G	rs115982059	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	29807843	29807844	chr22:29807844:G:A	rs5752963	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr22	29807852	29807853	chr22:29807853:G:A	rs2079338	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr22	29871855	29871856	chr22:29871856:C:T	rs182121083	C	T	C	Hoxa9_MA0594.1	0	1	-	9.461778229732111	8.59659271700956	GGCATAAATCA
chr22	29871861	29871862	chr22:29871862:G:A	rs73394881	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr22	29914304	29914305	chr22:29914305:C:G	rs5763601	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr22	29938366	29938367	chr22:29938367:G:C	rs36593	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr22	29952662	29952663	chr22:29952663:A:T	rs737904	A	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr22	30235861	30235862	chr22:30235862:G:A	rs141867990	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr22	30247619	30247620	chr22:30247620:C:G	rs2267153	C	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr22	30565954	30565955	chr22:30565955:A:G	rs73881480	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr22	30607573	30607574	chr22:30607574:A:G	rs16988828	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr22	31038716	31038717	chr22:31038717:G:T	rs12484162	G	T	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr22	31055977	31055978	chr22:31055978:G:C	rs5753446	G	C	C	Hoxa9_MA0594.1	3	1	+	7.515742854075367	6.569324857004984	GCCGTCAATCT
chr22	31063207	31063208	chr22:31063208:A:G	rs7285683	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr22	31394302	31394303	chr22:31394303:G:A	rs2899164	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr22	31400576	31400577	chr22:31400577:C:T	rs11704156	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr22	31449335	31449336	chr22:31449336:A:T	chr22:31449336:A:T	A	T	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr22	31659456	31659457	chr22:31659457:T:C	rs16989374	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	31755717	31755718	chr22:31755718:T:C	rs5998115	T	C	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr22	31930034	31930035	chr22:31930035:C:T	rs2015580	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	31940969	31940970	chr22:31940970:T:C	rs56139972	T	C	C	Hoxa9_MA0594.1	7	1	-	7.58471315392892	0.6817794802260009	CTCATCAATAA
chr22	31968409	31968410	chr22:31968410:C:G	rs62240611	C	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	31968413	31968414	chr22:31968414:A:T	rs62240612	A	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr22	32030897	32030898	chr22:32030898:A:G	rs77399133	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	32311474	32311475	chr22:32311475:C:G	rs79030540	C	G	c	Hoxa9_MA0594.1	1	1	+	7.260118532919163	4.201350571272203	GCCATCCATCT
chr22	32338804	32338805	chr22:32338805:G:A	rs62239307	G	A	g	Hoxa9_MA0594.1	11	0	+	0	0	.
chr22	32357817	32357818	chr22:32357818:C:T	rs111919643	C	T	-	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	32539934	32539935	chr22:32539935:G:A	rs79392563	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr22	32571389	32571390	chr22:32571390:G:A	rs5749464	G	A	A	Hoxa9_MA0594.1	2	1	-	7.431493751404856	5.511162668277634	CACATAAATCC
chr22	32577083	32577084	chr22:32577084:A:G	rs13347218	A	G	A	Hoxa9_MA0594.1	2	1	+	7.440758349612847	2.038396332778209	CCAGTCAATCA
chr22	32605963	32605964	chr22:32605964:C:T	rs9784225	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	32649683	32649684	chr22:32649684:A:G	rs139611653	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	32695605	32695606	chr22:32695606:C:T	rs5998588	C	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr22	32718614	32718615	chr22:32718615:A:G	rs917963514	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr22	32725343	32725344	chr22:32725344:A:T	rs12484015	A	T	A	Hoxa9_MA0594.1	8	1	+	9.050786138279621	12.520546191379072	GCCATAAAACA
chr22	32764884	32764885	chr22:32764885:T:C	rs116896596	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr22	32801103	32801104	chr22:32801104:T:A	rs2234920	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	32801103	32801104	chr22:32801104:T:C	chr22:32801104:T:C	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	32851575	32851576	chr22:32851576:G:A	rs78954299	G	A	G	Hoxa9_MA0594.1	5	1	+	8.689816197693718	11.205960009490326	CTCATGAATCA
chr22	32881563	32881564	chr22:32881564:C:T	rs241902	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	32986770	32986771	chr22:32986771:A:G	rs1365837	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr22	33124619	33124620	chr22:33124620:C:G	rs80064195	C	G	C	Hoxa9_MA0594.1	0	1	+	10.652542986825011	11.075579407603364	CTCATCAATCA
chr22	33273505	33273506	chr22:33273506:G:C	rs16992034	G	C	G	Hoxa9_MA0594.1	5	1	+	9.581365958804113	11.544092747935409	CCCATGAATCA
chr22	33329201	33329202	chr22:33329202:T:A	rs368744009	T	A	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr22	33335573	33335574	chr22:33335574:A:T	rs540281541	A	T	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr22	33401421	33401422	chr22:33401422:T:C	rs12159755	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr22	33438575	33438576	chr22:33438576:G:A	rs60920302	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr22	33506355	33506356	chr22:33506356:C:G	rs739027	C	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr22	33506363	33506364	chr22:33506364:C:T	rs75126474	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr22	33544220	33544221	chr22:33544221:A:G	rs929879157	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	33579852	33579853	chr22:33579853:C:G	rs2267234	C	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr22	33817730	33817731	chr22:33817731:G:A	rs2267294	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr22	33893648	33893649	chr22:33893649:C:T	rs56876495	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr22	33957444	33957445	chr22:33957445:T:C	rs5754769	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr22	34105551	34105552	chr22:34105552:G:A	rs135198	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	34147520	34147521	chr22:34147521:A:G	rs5754848	A	G	G	Hoxa9_MA0594.1	7	1	+	8.814258917513376	1.9113252438104564	ACCATATATCA
chr22	34192712	34192713	chr22:34192713:T:G	rs7285898	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr22	34332758	34332759	chr22:34332759:T:A	rs425965	T	A	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr22	34507885	34507886	chr22:34507886:A:G	rs130714	A	G	a	Hoxa9_MA0594.1	3	1	+	7.027779228384772	4.045982800975915	GCCATCAAACT
chr22	34544949	34544950	chr22:34544950:T:G	rs5755093	T	G	G	Hoxa9_MA0594.1	1	1	-	8.397354331692144	10.60021510825185	GATATAAATCA
chr22	34608100	34608101	chr22:34608101:G:C	rs4821271	G	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	34806278	34806279	chr22:34806279:T:C	rs1028344	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr22	35017981	35017982	chr22:35017982:C:T	rs111638444	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr22	35018026	35018027	chr22:35018027:T:G	rs5750033	T	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr22	35293421	35293422	chr22:35293422:G:T	rs2272791	G	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr22	35537755	35537756	chr22:35537756:C:T	rs9619553	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr22	35649085	35649086	chr22:35649086:T:A	rs56936361	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr22	35785719	35785720	chr22:35785720:G:A	rs76513288	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr22	36188664	36188665	chr22:36188665:A:G	rs132697	A	G	a	Hoxa9_MA0594.1	11	0	+	0	0	.
chr22	36212113	36212114	chr22:36212114:C:T	rs9622344	C	T	c	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	36216211	36216212	chr22:36216212:C:G	rs6000200	C	G	c	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr22	36274643	36274644	chr22:36274644:C:T	rs4821476	C	T	t	Hoxa9_MA0594.1	14	0	+	0	0	.
chr22	36276229	36276230	chr22:36276230:A:C	rs136187	A	C	A	Hoxa9_MA0594.1	4	1	-	7.797841558437467	0.889086779122247	CCAATCAATTA
chr22	36276248	36276249	chr22:36276249:T:C	rs767855	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr22	36288284	36288285	chr22:36288285:C:T	rs5756130	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr22	36323314	36323315	chr22:36323315:G:A	rs12160045	G	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	36382196	36382197	chr22:36382197:A:G	rs113800094	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr22	36467187	36467188	chr22:36467188:A:G	rs537564819	A	G	A	Hoxa9_MA0594.1	7	1	+	11.544092747935409	4.641159074232488	CCCATCAATCA
chr22	36493768	36493769	chr22:36493769:G:A	rs138563338	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	36613839	36613840	chr22:36613840:C:T	rs564540863	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr22	36712676	36712677	chr22:36712677:C:T	rs5756310	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	36893142	36893143	chr22:36893143:A:G	rs73883946	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr22	36913404	36913405	chr22:36913405:C:T	rs79122053	C	T	C	Hoxa9_MA0594.1	1	1	+	6.589196817996939	5.697647056886544	CCCATCAAGCA
chr22	36942754	36942755	chr22:36942755:T:C	rs131845	T	C	c	Hoxa9_MA0594.1	10	1	-	8.450866189019125	1.8140932032663564	GTCATCAATTA
chr22	37175274	37175275	chr22:37175275:C:T	rs77835579	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	37242180	37242181	chr22:37242181:C:G	rs35634144	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	37242768	37242769	chr22:37242769:G:A	chr22:37242769:G:A	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	37318384	37318385	chr22:37318385:A:G	rs117472908	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr22	37379217	37379218	chr22:37379218:A:G	rs968745	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr22	37449504	37449505	chr22:37449505:A:G	rs74433527	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	37449575	37449576	chr22:37449576:C:T	rs73414270	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr22	37608354	37608355	chr22:37608355:G:A	rs117906809	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr22	37696997	37696998	chr22:37696998:C:T	rs9607488	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr22	37697018	37697019	chr22:37697019:T:G	rs75186179	T	G	T	Hoxa9_MA0594.1	2	1	-	8.01767889594621	9.139216866859913	ACAATGAATCA
chr22	37718557	37718558	chr22:37718558:A:G	rs2413480	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr22	37827252	37827253	chr22:37827253:C:T	rs138493483	C	T	c	Hoxa9_MA0594.1	26	0	-	0	0	.
chr22	37943736	37943737	chr22:37943737:G:A	rs140720586	G	A	g	Hoxa9_MA0594.1	18	0	-	0	0	.
chr22	38069836	38069837	chr22:38069837:A:C	chr22:38069837:A:C	A	C	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	38184909	38184910	chr22:38184910:G:T	rs13056506	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr22	38219155	38219156	chr22:38219156:C:T	rs112900623	C	T	C	Hoxa9_MA0594.1	10	1	+	7.160606422172025	8.154171777578652	CCTATCAATCC
chr22	38396222	38396223	chr22:38396223:G:C	rs196110	G	C	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	38479626	38479627	chr22:38479627:A:G	rs138428820	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr22	38700117	38700118	chr22:38700118:T:C	rs185814757	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr22	39096645	39096646	chr22:39096646:C:T	rs75842619	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr22	39117524	39117525	chr22:39117525:C:T	rs139358	C	T	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr22	39151195	39151196	chr22:39151196:G:A	rs139404	G	A	G	Hoxa9_MA0594.1	0	1	+	8.34024025881841	7.475054746095858	GGAATAAATCA
chr22	39157813	39157814	chr22:39157814:G:A	rs139414	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	39255526	39255527	chr22:39255527:A:G	rs77416181	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	39299499	39299500	chr22:39299500:G:A	rs137607	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr22	39521747	39521748	chr22:39521748:G:T	rs114210419	G	T	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr22	39522882	39522883	chr22:39522883:A:G	rs891360142	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr22	39699556	39699557	chr22:39699557:G:T	rs12171155	G	T	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	39815014	39815015	chr22:39815015:G:A	rs75147514	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr22	39820312	39820313	chr22:39820313:T:C	rs77809852	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr22	39820546	39820547	chr22:39820547:T:C	rs73426191	T	C	T	Hoxa9_MA0594.1	7	1	-	8.351258581102782	1.4483249073998614	CCAATAAATTA
chr22	39943545	39943546	chr22:39943546:C:T	rs866421534	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr22	40004907	40004908	chr22:40004908:A:G	rs2958659	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr22	40153378	40153379	chr22:40153379:A:G	rs62236803	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr22	40178165	40178166	chr22:40178166:T:A	rs6001827	T	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr22	40346331	40346332	chr22:40346332:A:G	rs1249620608	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr22	40387775	40387776	chr22:40387776:G:C	rs2294348	G	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr22	40387806	40387807	chr22:40387807:C:T	rs78488542	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr22	40480229	40480230	chr22:40480230:T:C	rs6001930	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	40661972	40661973	chr22:40661973:C:T	rs7284506	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr22	40701485	40701486	chr22:40701486:C:T	rs5995899	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr22	40756023	40756024	chr22:40756024:A:G	rs73172853	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr22	41048345	41048346	chr22:41048346:C:T	rs12628681	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	41048358	41048359	chr22:41048359:A:G	rs1474846	A	G	G	Hoxa9_MA0594.1	7	1	+	8.707588800243967	1.8046551265410462	CCTATAAATCT
chr22	41669627	41669628	chr22:41669628:C:T	rs111294906	C	T	C	Hoxa9_MA0594.1	1	1	+	7.959399534385545	7.0678497732751495	CCAATCAATCC
chr22	41859700	41859701	chr22:41859701:A:G	rs74823524	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr22	41907834	41907835	chr22:41907835:A:G	rs79498857	A	G	A	Hoxa9_MA0594.1	4	1	-	6.559551194393908	-0.3492035849213111	CCCATCACTCA
chr22	41925752	41925753	chr22:41925753:G:C	rs55898132	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	41948403	41948404	chr22:41948404:A:G	rs5996092	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr22	42106065	42106066	chr22:42106066:A:G	rs9611734	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr22	42314362	42314363	chr22:42314363:G:A	rs139621215	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	42444718	42444719	chr22:42444719:C:T	rs183732093	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr22	42479472	42479473	chr22:42479473:A:G	rs5751282	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr22	42511612	42511613	chr22:42511613:T:C	rs12485160	T	C	T	Hoxa9_MA0594.1	3	1	-	8.18560062555707	5.2038041981482115	ACCATAAAACA
chr22	42532917	42532918	chr22:42532918:A:G	rs56306647	A	G	-	Hoxa9_MA0594.1	24	0	+	0	0	.
chr22	42573102	42573103	chr22:42573103:G:T	rs137050	G	T	g	Hoxa9_MA0594.1	11	0	-	0	0	.
chr22	42573123	42573124	chr22:42573124:G:A	rs137051	G	A	a	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr22	42639921	42639922	chr22:42639922:C:G	rs12628044	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr22	42647947	42647948	chr22:42647948:T:A	rs2267459	T	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr22	42754865	42754866	chr22:42754866:C:G	rs9611874	C	G	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	42883275	42883276	chr22:42883276:A:G	rs9611953	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr22	43028189	43028190	chr22:43028190:C:A	rs1457983053	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr22	43211297	43211298	chr22:43211298:T:C	rs34000367	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr22	43215534	43215535	chr22:43215535:C:T	rs59841981	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	43434927	43434928	chr22:43434928:C:T	rs6519374	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr22	43545570	43545571	chr22:43545571:T:C	rs8136307	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr22	43670642	43670643	chr22:43670643:C:T	rs79169414	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr22	43670666	43670667	chr22:43670667:C:T	rs137768	C	T	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr22	43711788	43711789	chr22:43711789:C:T	rs17568513	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr22	43750417	43750418	chr22:43750418:G:A	rs76513336	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr22	44003070	44003071	chr22:44003071:T:C	rs73178450	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	44032134	44032135	chr22:44032135:G:A	rs713747	G	A	g	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr22	44128316	44128317	chr22:44128317:C:A	rs133915	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr22	44129333	44129334	chr22:44129334:G:A	rs9614344	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr22	44203772	44203773	chr22:44203773:G:A	rs139172	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	44203775	44203776	chr22:44203776:G:A	rs139173	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	44224307	44224308	chr22:44224308:C:T	rs182950992	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	44438513	44438514	chr22:44438514:A:C	rs8139046	A	C	C	Hoxa9_MA0594.1	8	1	-	7.390499134806127	2.435603204867659	CCCATACATCT
chr22	44446473	44446474	chr22:44446474:A:C	rs133795	A	C	C	Hoxa9_MA0594.1	8	1	-	10.159406543039145	5.204510613100675	GTCATAAATCT
chr22	44453537	44453538	chr22:44453538:T:C	rs133757	T	C	T	Hoxa9_MA0594.1	6	1	-	6.699705458891948	-0.11789532686370846	CCCCTAAATCT
chr22	44511567	44511568	chr22:44511568:A:T	rs73424637	A	T	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr22	44539849	44539850	chr22:44539850:G:A	rs111065208	G	A	-	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr22	44574618	44574619	chr22:44574619:G:A	rs982969433	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr22	44605401	44605402	chr22:44605402:C:T	rs16992551	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr22	44728965	44728966	chr22:44728966:C:T	rs3761481	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr22	45043082	45043083	chr22:45043083:A:G	rs1034230603	A	G	a	Hoxa9_MA0594.1	1	1	-	9.165841187632518	10.057390948742912	GTCATAAATCC
chr22	45052888	45052889	chr22:45052889:C:T	rs910307	C	T	t	Hoxa9_MA0594.1	19	0	-	0	0	.
chr22	45166784	45166785	chr22:45166785:C:G	rs4140644	C	G	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr22	45226469	45226470	chr22:45226470:A:G	rs5766564	A	G	G	Hoxa9_MA0594.1	10	1	+	7.1426138406622535	0.5058408549094846	CCCATAAAGCA
chr22	45452140	45452141	chr22:45452141:G:A	rs60324678	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr22	45491544	45491545	chr22:45491545:C:T	rs5765412	C	T	C	Hoxa9_MA0594.1	0	1	+	7.816039039133571	5.2710736939253025	CTTATAAATCT
chr22	45582780	45582781	chr22:45582781:C:T	rs3827394	C	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr22	45582781	45582782	chr22:45582782:G:A	rs76043079	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr22	45594841	45594842	chr22:45594842:C:G	rs763103	C	G	G	Hoxa9_MA0594.1	0	1	-	7.608170449234994	7.185134028456644	GCAATCCATCA
chr22	45709376	45709377	chr22:45709377:G:C	rs2283665	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr22	45994362	45994363	chr22:45994363:C:T	rs28496879	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr22	46064828	46064829	chr22:46064829:C:T	rs76866825	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr22	46073945	46073946	chr22:46073946:A:G	rs866044121	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr22	46251946	46251947	chr22:46251947:G:A	rs78023664	G	A	G	Hoxa9_MA0594.1	9	1	-	8.082954538162921	5.458241319578682	TCCATAAATCT
chr22	46264116	46264117	chr22:46264117:T:C	rs74879643	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr22	46266088	46266089	chr22:46266089:A:G	rs130646	A	G	A	Hoxa9_MA0594.1	10	1	+	7.727146254177281	1.0903732684245124	ACCCTAAATCA
chr22	46334759	46334760	chr22:46334760:G:T	rs115131981	G	T	G	Hoxa9_MA0594.1	0	1	+	12.520546191379072	9.552544425392455	GCCATAAATCA
chr22	46367948	46367949	chr22:46367949:C:T	rs12169526	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	46367953	46367954	chr22:46367954:G:T	rs575547909	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr22	46379196	46379197	chr22:46379197:C:A	rs767809438	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr22	46514865	46514866	chr22:46514866:G:A	rs77068715	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	46514899	46514900	chr22:46514900:G:A	rs777620789	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	46564631	46564632	chr22:46564632:T:C	rs6007935	T	C	t	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr22	46564667	46564668	chr22:46564668:T:A	rs6007936	T	A	t	Hoxa9_MA0594.1	22	0	+	0	0	.
chr22	46614017	46614018	chr22:46614018:G:A	rs138499	G	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr22	46645000	46645001	chr22:46645001:C:T	rs5769053	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr22	46739365	46739366	chr22:46739366:A:C	rs1053339657	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	46775558	46775559	chr22:46775559:T:C	rs801628	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr22	46799763	46799764	chr22:46799764:A:G	rs5769164	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr22	46799783	46799784	chr22:46799784:T:G	rs5769165	T	G	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr22	46931995	46931996	chr22:46931996:T:C	rs1983567	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr22	46955001	46955002	chr22:46955002:G:A	rs73186520	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr22	46957829	46957830	chr22:46957830:C:T	rs78591809	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr22	46962238	46962239	chr22:46962239:A:G	rs136093	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	46991419	46991420	chr22:46991420:T:C	rs136134	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr22	47110930	47110931	chr22:47110931:T:C	rs78221339	T	C	T	Hoxa9_MA0594.1	8	1	-	7.605819354503911	6.120683477664895	GTCATCAAACA
chr22	47114024	47114025	chr22:47114025:G:A	rs5766679	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr22	47135301	47135302	chr22:47135302:G:A	rs5767523	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr22	47135337	47135338	chr22:47135338:G:A	rs5767524	G	A	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr22	47186734	47186735	chr22:47186735:T:G	rs135374	T	G	G	Hoxa9_MA0594.1	8	1	-	7.605819354503911	4.202291357503474	GTCATCAAACA
chr22	47225804	47225805	chr22:47225805:C:T	rs117112794	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr22	47292476	47292477	chr22:47292477:T:C	rs9626993	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr22	47292494	47292495	chr22:47292495:A:C	rs17223061	A	C	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr22	47296549	47296550	chr22:47296550:C:T	rs117442528	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	47296551	47296552	chr22:47296552:A:G	rs112469157	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	47296680	47296681	chr22:47296681:T:A	rs113384049	T	A	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr22	47333596	47333597	chr22:47333597:T:A	rs732493	T	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr22	47334352	47334353	chr22:47334353:C:T	rs4823631	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr22	47389947	47389948	chr22:47389948:G:A	rs11704379	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	47545978	47545979	chr22:47545979:C:T	rs16997044	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr22	47564544	47564545	chr22:47564545:T:A	rs548199153	T	A	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr22	47603774	47603775	chr22:47603775:A:T	rs9615170	A	T	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr22	47636695	47636696	chr22:47636696:G:A	rs6007710	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr22	47763654	47763655	chr22:47763655:T:G	rs6007742	T	G	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr22	47804842	47804843	chr22:47804843:G:A	rs9615222	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr22	47804851	47804852	chr22:47804852:T:A	rs932550	T	A	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr22	47831850	47831851	chr22:47831851:T:C	chr22:47831851:T:C	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr22	47918640	47918641	chr22:47918641:C:T	rs9615679	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr22	47996316	47996317	chr22:47996317:C:T	rs11090805	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr22	47996318	47996319	chr22:47996319:G:A	rs9615725	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr22	48103824	48103825	chr22:48103825:C:T	rs35546688	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	48112882	48112883	chr22:48112883:T:C	rs80251587	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr22	48257208	48257209	chr22:48257209:C:T	rs78870370	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr22	48269341	48269342	chr22:48269342:G:C	rs9627282	G	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr22	48406005	48406006	chr22:48406006:G:A	rs130805	G	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	48446523	48446524	chr22:48446524:G:A	rs9615322	G	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr22	48456750	48456751	chr22:48456751:C:T	rs8137943	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	48456774	48456775	chr22:48456775:C:T	rs12169429	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr22	48478106	48478107	chr22:48478107:T:C	rs5768657	T	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr22	48487820	48487821	chr22:48487821:A:C	rs73171469	A	C	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr22	48590473	48590474	chr22:48590474:A:T	rs34345591	A	T	A	Hoxa9_MA0594.1	8	1	-	6.7402641976609665	3.2705041445615146	CCCATGTATCA
chr22	48606849	48606850	chr22:48606850:T:C	rs28601004	T	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	48606852	48606853	chr22:48606853:T:C	rs28614094	T	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr22	48664842	48664843	chr22:48664843:G:A	rs57382044	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	48691023	48691024	chr22:48691024:G:C	rs73435879	G	C	C	Hoxa9_MA0594.1	0	1	+	7.515742854075367	7.092706433297016	GCCGTCAATCT
chr22	48804985	48804986	chr22:48804986:G:A	rs570897724	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr22	48835727	48835728	chr22:48835728:G:A	rs28444486	G	A	g	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr22	48939944	48939945	chr22:48939945:A:G	rs78487674	A	G	a	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr22	48939945	48939946	chr22:48939946:A:C	rs75838299	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr22	49114731	49114732	chr22:49114732:C:G	rs135219	C	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr22	49137612	49137613	chr22:49137613:G:T	rs9627870	G	T	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr22	49150804	49150805	chr22:49150805:G:T	rs76591035	G	T	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr22	49158344	49158345	chr22:49158345:A:G	rs6009185	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr22	49220816	49220817	chr22:49220817:C:T	rs5770058	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr22	49238841	49238842	chr22:49238842:T:A	rs76139376	T	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr22	49252102	49252103	chr22:49252103:A:C	rs768378735	A	C	A	Hoxa9_MA0594.1	10	1	-	9.736370122260793	4.569187023737557	CTCATAAATCT
chr22	49252129	49252130	chr22:49252130:T:C	rs2688135	T	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr22	49258801	49258802	chr22:49258802:C:G	rs2187770	C	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	49298723	49298724	chr22:49298724:C:G	rs73437132	C	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr22	49363306	49363307	chr22:49363307:T:C	rs2007314	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr22	49367573	49367574	chr22:49367574:C:T	rs5770306	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr22	49415353	49415354	chr22:49415354:C:A	rs17181008	C	A	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr22	49415357	49415358	chr22:49415358:C:A	rs8138494	C	A	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr22	49426021	49426022	chr22:49426022:G:A	rs5770425	G	A	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr22	49433029	49433030	chr22:49433030:T:C	rs13057009	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr22	49433060	49433061	chr22:49433061:G:A	rs13058612	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr22	49433230	49433231	chr22:49433231:G:A	rs62231916	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr22	49440030	49440031	chr22:49440031:G:A	rs6009690	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr22	49517787	49517788	chr22:49517788:G:A	rs77078751	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr22	49517818	49517819	chr22:49517819:G:C	rs555546374	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr22	49926319	49926320	chr22:49926320:G:A	rs80330007	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr22	49927544	49927545	chr22:49927545:C:T	rs73443986	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr22	50092071	50092072	chr22:50092072:A:T	rs9617066	A	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr22	50250600	50250601	chr22:50250601:A:G	rs909688	A	G	G	Hoxa9_MA0594.1	4	1	-	6.6760616242237525	-0.23269315509146904	ACCATGAATCC
chr22	50544566	50544567	chr22:50544567:C:T	rs147445764	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr22	50701969	50701970	chr22:50701970:C:G	rs75767639	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	59505	59506	chr3:59506:C:G	rs149411918	C	G	C	Hoxa9_MA0594.1	5	1	+	7.838158659038301	5.875431869907006	GTCATCCATCA
chr3	59508	59509	chr3:59509:T:A	rs7630409	T	A	T	Hoxa9_MA0594.1	8	1	+	7.838158659038301	4.368398605938849	GTCATCCATCA
chr3	63187	63188	chr3:63188:A:G	rs73094849	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	69800	69801	chr3:69801:A:T	rs554212083	A	T	A	Hoxa9_MA0594.1	10	1	+	7.801541603022757	6.331951715793224	GACATGAATCA
chr3	194224	194225	chr3:194225:A:G	rs114977520	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	239166	239167	chr3:239167:A:G	rs112752491	A	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	284547	284548	chr3:284548:C:T	rs149938505	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	916412	916413	chr3:916413:A:C	rs9838891	A	C	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	945841	945842	chr3:945842:C:A	rs145892834	C	A	C	Hoxa9_MA0594.1	0	1	+	11.205960009490326	10.763810917546127	CTCATAAATCA
chr3	1125705	1125706	chr3:1125706:T:C	rs1394182	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	1208625	1208626	chr3:1208626:C:T	rs10510165	C	T	C	Hoxa9_MA0594.1	3	1	-	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr3	1225501	1225502	chr3:1225502:G:A	rs3772345	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	1447195	1447196	chr3:1447196:T:C	rs12487806	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	1750420	1750421	chr3:1750421:G:A	rs6797639	G	A	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	1963009	1963010	chr3:1963010:T:A	rs115864661	T	A	T	Hoxa9_MA0594.1	8	1	+	9.182953099595478	5.713193046496027	CTCATCAATCT
chr3	2107706	2107707	chr3:2107707:G:C	rs9866993	G	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	2144866	2144867	chr3:2144867:T:C	rs4685485	T	C	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	2217148	2217149	chr3:2217149:G:A	rs1685508	G	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	2375806	2375807	chr3:2375807:A:G	rs3856839	A	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	2375836	2375837	chr3:2375837:C:T	rs17013467	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	2512612	2512613	chr3:2512613:G:T	rs9858503	G	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	2597787	2597788	chr3:2597788:G:A	rs371493173	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	2910990	2910991	chr3:2910991:C:T	rs56234939	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	2993953	2993954	chr3:2993954:A:T	rs1499127	A	T	A	Hoxa9_MA0594.1	0	1	+	9.642272946632424	7.539456693368356	ATAATAAATCA
chr3	3192340	3192341	chr3:3192341:T:G	rs4109079	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	3195215	3195216	chr3:3195216:T:C	rs967963	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	3211165	3211166	chr3:3211166:T:A	rs12636285	T	A	t	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	3407807	3407808	chr3:3407808:G:A	rs9881450	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	3634236	3634237	chr3:3634237:G:C	rs1997437	G	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	3649212	3649213	chr3:3649213:T:C	rs17034952	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	3765346	3765347	chr3:3765347:T:G	rs1065344	T	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	3905992	3905993	chr3:3905993:T:C	rs13062181	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	4062933	4062934	chr3:4062934:C:A	rs141739453	C	A	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	4271800	4271801	chr3:4271801:G:T	rs310694	G	T	G	Hoxa9_MA0594.1	0	1	+	7.8728260628999855	4.904824296913368	GCCATCAATTT
chr3	4529986	4529987	chr3:4529987:T:G	rs6796205	T	G	G	Hoxa9_MA0594.1	4	1	+	9.19220543602036	2.283450656705141	ACCATAAATCC
chr3	4836252	4836253	chr3:4836253:C:G	rs4685831	C	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	4843495	4843496	chr3:4843496:A:C	rs1822223	A	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	5066345	5066346	chr3:5066346:T:C	rs9881287	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	5197923	5197924	chr3:5197924:A:G	rs146737754	A	G	A	Hoxa9_MA0594.1	7	1	+	9.764268392154055	2.861334718451134	GACATCAATCA
chr3	5720680	5720681	chr3:5720681:C:G	rs78942055	C	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	5720696	5720697	chr3:5720697:C:T	rs148829206	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	5797714	5797715	chr3:5797715:T:C	rs6784744	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	5797716	5797717	chr3:5797717:A:G	rs6782097	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	6085129	6085130	chr3:6085130:G:A	rs6443021	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	6340416	6340417	chr3:6340417:T:G	rs4686044	T	G	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	6340444	6340445	chr3:6340445:A:G	rs4686045	A	G	-	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	6710606	6710607	chr3:6710607:A:G	rs9829452	A	G	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	6805588	6805589	chr3:6805589:A:G	rs6803744	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	7126581	7126582	chr3:7126582:A:G	rs75284911	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	7237702	7237703	chr3:7237703:T:C	rs2013646	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	7309685	7309686	chr3:7309686:C:T	rs984123	C	T	C	Hoxa9_MA0594.1	0	1	-	9.929418333235837	9.064232820513286	GCAATAAATCT
chr3	7440166	7440167	chr3:7440167:T:C	rs17717959	T	C	C	Hoxa9_MA0594.1	10	1	-	9.196147443905666	2.559374458152897	GAAATAAATCA
chr3	7519938	7519939	chr3:7519939:C:A	rs140102642	C	A	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	7519946	7519947	chr3:7519947:T:G	chr3:7519947:T:G	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	7519958	7519959	chr3:7519959:G:A	rs115861218	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	7543758	7543759	chr3:7543759:G:A	rs73019809	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	7798615	7798616	chr3:7798616:G:T	rs6772809	G	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	7841752	7841753	chr3:7841753:T:G	rs1386981	T	G	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	7841765	7841766	chr3:7841766:A:G	rs1386982	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	7924449	7924450	chr3:7924450:G:T	rs6803927	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	7962611	7962612	chr3:7962612:C:T	rs77170366	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	8207655	8207656	chr3:8207656:G:C	rs114150398	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	8207670	8207671	chr3:8207671:C:T	rs77898787	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	8259912	8259913	chr3:8259913:A:C	rs7642051	A	C	A	Hoxa9_MA0594.1	10	1	-	8.74080400765128	3.573620909128044	ATCATCAATCT
chr3	8532346	8532347	chr3:8532347:G:C	rs149634938	G	C	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	8598485	8598486	chr3:8598486:T:G	rs35691807	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	8598488	8598489	chr3:8598489:A:G	rs34479410	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	8723337	8723338	chr3:8723338:A:G	rs1471970	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	9045525	9045526	chr3:9045526:T:A	rs62244638	T	A	t	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	9062751	9062752	chr3:9062752:C:T	rs2669996	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	9141437	9141438	chr3:9141438:T:C	rs11720620	T	C	t	Hoxa9_MA0594.1	3	1	-	9.452499902096816	6.470703474687958	AACATAAATCA
chr3	9204137	9204138	chr3:9204138:G:A	rs1145159	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	9280513	9280514	chr3:9280514:C:T	rs138888242	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	9298571	9298572	chr3:9298572:T:C	rs11925343	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	9716069	9716070	chr3:9716070:G:A	rs708571	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	9716075	9716076	chr3:9716076:A:G	rs188708955	A	G	A	Hoxa9_MA0594.1	5	1	+	8.774295001881132	6.258151190084522	GCAATAAATTA
chr3	9785084	9785085	chr3:9785085:C:T	rs9813445	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	9889829	9889830	chr3:9889830:C:A	rs62247506	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	10140877	10140878	chr3:10140878:G:A	rs779803	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	10199536	10199537	chr3:10199537:G:A	rs6763870	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	10199538	10199539	chr3:10199539:T:G	rs696319	T	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	10409861	10409862	chr3:10409862:T:C	rs13317445	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	10510873	10510874	chr3:10510874:C:A	rs6780421	C	A	C	Hoxa9_MA0594.1	5	1	+	9.080937505299248	9.634354527964561	CCCATCAATCC
chr3	10646972	10646973	chr3:10646973:C:T	rs17033278	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	10722553	10722554	chr3:10722554:A:G	rs6776426	A	G	A	Hoxa9_MA0594.1	4	1	-	8.294678504924521	1.3859237256092996	GACATCAATCT
chr3	10861176	10861177	chr3:10861177:G:T	rs4684739	G	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	10864920	10864921	chr3:10864921:G:T	rs35418313	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	10900046	10900047	chr3:10900047:T:C	rs73121707	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	10934058	10934059	chr3:10934059:C:T	rs2272399	C	T	C	Hoxa9_MA0594.1	0	1	-	8.34024025881841	7.475054746095858	GGAATAAATCA
chr3	11130673	11130674	chr3:11130674:T:G	rs67267705	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	11226334	11226335	chr3:11226335:C:A	rs347607	C	A	A	Hoxa9_MA0594.1	2	1	+	9.552544425392455	8.431006454478752	TCCATAAATCA
chr3	11391432	11391433	chr3:11391433:C:T	chr3:11391433:C:T	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	11541217	11541218	chr3:11541218:T:C	rs191535347	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	11592167	11592168	chr3:11592168:A:G	rs2345342	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	11592171	11592172	chr3:11592172:C:G	rs2345343	C	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	11600593	11600594	chr3:11600594:G:A	chr3:11600594:G:A	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr3	11604296	11604297	chr3:11604297:T:C	rs58478554	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	11641475	11641476	chr3:11641476:G:A	rs7621621	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	11690801	11690802	chr3:11690802:A:C	rs6782324	A	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	11728660	11728661	chr3:11728661:C:T	rs6782912	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	11919604	11919605	chr3:11919605:C:T	chr3:11919605:C:T	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	11955836	11955837	chr3:11955837:C:T	rs177600	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	12194144	12194145	chr3:12194145:C:T	rs114938103	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	12228119	12228120	chr3:12228120:T:C	rs17671487	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	12467839	12467840	chr3:12467840:T:C	rs767655744	T	C	T	Hoxa9_MA0594.1	10	1	-	7.864522907426146	1.227749921673377	ACCATCCATCA
chr3	12483641	12483642	chr3:12483642:T:C	rs17036801	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	13222985	13222986	chr3:13222986:G:A	rs9809112	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	13280351	13280352	chr3:13280352:A:G	rs357116	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	13579644	13579645	chr3:13579645:C:T	rs76609561	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	13647785	13647786	chr3:13647786:G:A	rs566237813	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	13884884	13884885	chr3:13884885:A:T	rs12491718	A	T	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	14171072	14171073	chr3:14171073:C:G	rs3731076	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	14404034	14404035	chr3:14404035:G:A	rs80120927	G	A	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	14434401	14434402	chr3:14434402:A:G	rs930336	A	G	G	Hoxa9_MA0594.1	3	1	+	8.561166597372587	5.5793701699637275	GTCATAAATAA
chr3	14454638	14454639	chr3:14454639:C:T	rs9834629	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	14511485	14511486	chr3:14511486:A:G	rs4685168	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	14636732	14636733	chr3:14636733:C:T	rs73135791	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	14778144	14778145	chr3:14778145:A:G	rs13072398	A	G	A	Hoxa9_MA0594.1	3	1	+	9.064232820513286	6.082436393104428	ACAATAAATCT
chr3	14837913	14837914	chr3:14837914:C:T	rs1687300	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	14873580	14873581	chr3:14873581:T:G	rs1627146	T	G	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	14877478	14877479	chr3:14877479:G:A	rs293918	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	15205606	15205607	chr3:15205607:C:T	rs143147141	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	15326170	15326171	chr3:15326171:A:G	rs60333681	A	G	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	15331422	15331423	chr3:15331423:T:A	rs73816882	T	A	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	15331423	15331424	chr3:15331424:A:T	rs3773463	A	T	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	15361539	15361540	chr3:15361540:C:G	rs116469683	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	15604711	15604712	chr3:15604712:A:G	rs4407396	A	G	a	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	15726094	15726095	chr3:15726095:C:T	rs2174171	C	T	C	Hoxa9_MA0594.1	1	1	+	7.2334010995627285	6.341851338452333	CCCATCTATCT
chr3	15805954	15805955	chr3:15805955:G:C	rs17041536	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	15875165	15875166	chr3:15875166:A:G	chr3:15875166:A:G	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	16264166	16264167	chr3:16264167:C:G	rs14080	C	G	C	Hoxa9_MA0594.1	9	1	+	11.628996430268678	4.830665468567831	GTCATAAATCA
chr3	16315882	16315883	chr3:16315883:G:A	rs145056599	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	16418339	16418340	chr3:16418340:A:G	rs71310345	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	16487854	16487855	chr3:16487855:C:G	rs113075095	C	G	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	16603592	16603593	chr3:16603593:C:T	rs73035082	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	16714756	16714757	chr3:16714757:G:A	rs74316705	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	16738493	16738494	chr3:16738494:A:G	rs189226010	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	17129788	17129789	chr3:17129789:A:T	rs11716032	A	T	T	Hoxa9_MA0594.1	1	1	-	11.628996430268678	10.317685414819367	GTCATAAATCA
chr3	17406358	17406359	chr3:17406359:A:G	rs41285053	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	17641196	17641197	chr3:17641197:C:G	rs150592098	C	G	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr3	17774591	17774592	chr3:17774592:C:T	rs141360575	C	T	c	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	18065980	18065981	chr3:18065981:T:C	rs34500886	T	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	18229984	18229985	chr3:18229985:A:G	rs73173584	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	18264503	18264504	chr3:18264504:G:A	rs9865306	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	18439981	18439982	chr3:18439982:C:T	rs115797892	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	18556872	18556873	chr3:18556873:T:A	rs72625820	T	A	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	18642374	18642375	chr3:18642375:G:A	rs7638475	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	18767739	18767740	chr3:18767740:A:T	rs9835075	A	T	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	18858955	18858956	chr3:18858956:C:T	rs1367746009	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	18858981	18858982	chr3:18858982:G:A	rs79350358	G	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	19002469	19002470	chr3:19002470:G:T	rs7430996	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	19794928	19794929	chr3:19794929:G:C	rs1506096	G	C	g	Hoxa9_MA0594.1	14	0	-	0	0	.
chr3	21920225	21920226	chr3:21920226:C:T	rs35338441	C	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	21989965	21989966	chr3:21989966:C:T	rs34995962	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	21991871	21991872	chr3:21991872:T:C	rs6550648	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	22245294	22245295	chr3:22245295:C:A	rs76992372	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	22245297	22245298	chr3:22245298:C:T	rs17011094	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	22510098	22510099	chr3:22510099:C:T	rs4527405	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	22569489	22569490	chr3:22569490:T:C	rs7631738	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	22691461	22691462	chr3:22691462:G:T	rs9834251	G	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	23000450	23000451	chr3:23000451:G:A	rs75649276	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	23113809	23113810	chr3:23113810:A:G	rs74656729	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	23271402	23271403	chr3:23271403:C:T	rs56073726	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	23271421	23271422	chr3:23271422:A:T	rs35266274	A	T	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	23389164	23389165	chr3:23389165:G:A	rs3104242	G	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	23721059	23721060	chr3:23721060:G:A	rs73824919	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	24258013	24258014	chr3:24258014:C:T	rs1667746	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	24368675	24368676	chr3:24368676:G:A	rs116023247	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	24484093	24484094	chr3:24484094:C:A	rs79456209	C	A	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	24765625	24765626	chr3:24765626:T:A	rs55793734	T	A	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	24837747	24837748	chr3:24837748:A:G	rs7615624	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	24910100	24910101	chr3:24910101:T:C	rs35357706	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	25291625	25291626	chr3:25291626:C:A	rs889951980	C	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	25400559	25400560	chr3:25400560:A:C	rs2116702	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	25537710	25537711	chr3:25537711:C:G	rs1286773	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	26065937	26065938	chr3:26065938:A:G	rs74427297	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	26622420	26622421	chr3:26622421:C:G	rs74557845	C	G	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	26657641	26657642	chr3:26657642:G:C	rs6551127	G	C	C	Hoxa9_MA0594.1	5	1	-	9.08885592396711	7.126129134835814	ATAATCAATCA
chr3	26844152	26844153	chr3:26844153:A:C	rs13089253	A	C	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	27078942	27078943	chr3:27078943:A:T	rs17434152	A	T	A	Hoxa9_MA0594.1	3	1	+	8.007749574707272	1.1650129320995837	GTCATCAATAA
chr3	27080154	27080155	chr3:27080155:A:G	rs73147091	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	27467467	27467468	chr3:27467468:C:G	rs1021498	C	G	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	27524228	27524229	chr3:27524229:G:A	rs57757081	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	27539412	27539413	chr3:27539413:C:T	rs2642916	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	27575755	27575756	chr3:27575756:C:T	rs537326042	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	27575781	27575782	chr3:27575782:C:T	rs183681415	C	T	C	Hoxa9_MA0594.1	9	1	+	7.643262731242535	5.0185495126582955	GTCATGAATCT
chr3	27595479	27595480	chr3:27595480:A:G	rs113710935	A	G	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	28115271	28115272	chr3:28115272:A:C	rs35084823	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	28174432	28174433	chr3:28174433:C:T	rs35493553	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	28883789	28883790	chr3:28883790:C:T	rs73057993	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	28883790	28883791	chr3:28883791:C:A	rs7622848	C	A	C	Hoxa9_MA0594.1	0	1	+	9.894648994041017	9.452499902096816	CACATAAATCA
chr3	28915838	28915839	chr3:28915839:A:G	rs76074939	A	G	A	Hoxa9_MA0594.1	3	1	+	9.980405685077507	6.9986092576686465	ACAATCAATCA
chr3	28947258	28947259	chr3:28947259:T:C	rs1500016	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	29140842	29140843	chr3:29140843:A:G	rs79287249	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	29189454	29189455	chr3:29189455:A:C	rs4467405	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	29198172	29198173	chr3:29198173:G:T	rs1030842	G	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	29249840	29249841	chr3:29249841:G:A	rs10490854	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	29307687	29307688	chr3:29307688:A:G	rs2217937	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	29764663	29764664	chr3:29764664:G:A	rs183601063	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	29958495	29958496	chr3:29958496:C:T	rs12488255	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	30222754	30222755	chr3:30222755:C:A	rs75526707	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	30299913	30299914	chr3:30299914:A:G	rs12487145	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	30299933	30299934	chr3:30299934:A:G	rs9819616	A	G	A	Hoxa9_MA0594.1	7	1	+	8.034113823095115	1.131180149392196	ACCATCAATAA
chr3	30357332	30357333	chr3:30357333:G:A	rs74721390	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	30440331	30440332	chr3:30440332:A:T	rs4441696	A	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	30448807	30448808	chr3:30448808:T:C	rs4552399	T	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	30455293	30455294	chr3:30455294:C:A	rs9831348	C	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	30751186	30751187	chr3:30751187:A:C	rs2292077	A	C	C	Hoxa9_MA0594.1	4	1	-	8.038914744234518	1.1301599649192977	GCCCTCAATCA
chr3	30900777	30900778	chr3:30900778:A:G	rs9681072	A	G	A	Hoxa9_MA0594.1	7	1	+	8.219694000462	1.3167603267590802	CAAATCAATCA
chr3	30900792	30900793	chr3:30900793:C:T	rs9682385	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	30984956	30984957	chr3:30984957:A:C	rs888835255	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	31002693	31002694	chr3:31002694:G:A	rs4642168	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	31353450	31353451	chr3:31353451:T:C	rs13434007	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	31804480	31804481	chr3:31804481:A:C	rs73059404	A	C	A	Hoxa9_MA0594.1	6	1	+	10.210393894880813	6.97297314631575	ATCATCAATCA
chr3	31804483	31804484	chr3:31804484:C:T	rs6789271	C	T	T	Hoxa9_MA0594.1	9	1	+	10.210393894880813	7.585680676296574	ATCATCAATCA
chr3	31836546	31836547	chr3:31836547:T:C	rs4566577	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	31959526	31959527	chr3:31959527:G:A	rs60011854	G	A	G	Hoxa9_MA0594.1	0	1	+	6.982587615172259	6.1174021024497085	GCCATCACTCA
chr3	31959549	31959550	chr3:31959550:C:A	rs9847800	C	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	32083909	32083910	chr3:32083910:A:G	rs17028843	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	32116485	32116486	chr3:32116486:G:A	rs11129491	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	32145404	32145405	chr3:32145405:A:G	rs11129496	A	G	G	Hoxa9_MA0594.1	3	1	+	10.60021510825185	7.618418680842992	GCTATAAATCA
chr3	32240551	32240552	chr3:32240552:T:C	rs4504192	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	32257744	32257745	chr3:32257745:G:C	rs12496184	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	32500060	32500061	chr3:32500061:G:A	rs17029617	G	A	G	Hoxa9_MA0594.1	9	1	-	10.627919883371188	8.00320666478695	CCCATAAATCT
chr3	32673803	32673804	chr3:32673804:A:G	rs6777680	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	32673826	32673827	chr3:32673827:A:G	rs6777694	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	32945318	32945319	chr3:32945319:C:T	rs78553800	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	32974316	32974317	chr3:32974317:G:C	rs76690753	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	33097403	33097404	chr3:33097404:A:T	chr3:33097404:A:T	A	T	a	Hoxa9_MA0594.1	10	1	+	7.801541603022757	6.331951715793224	GACATGAATCA
chr3	33097410	33097411	chr3:33097411:C:T	rs148730537	C	T	c	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	33097412	33097413	chr3:33097413:C:T	rs755522884	C	T	c	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	33117710	33117711	chr3:33117711:C:T	rs75092161	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	33255480	33255481	chr3:33255481:T:C	rs56315731	T	C	T	Hoxa9_MA0594.1	7	1	-	10.074502860705875	3.171569187002954	CCCATCAATCT
chr3	33278713	33278714	chr3:33278714:A:G	rs939776284	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	33363671	33363672	chr3:33363672:G:A	rs55697420	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	33372850	33372851	chr3:33372851:T:G	rs73828177	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	34208143	34208144	chr3:34208144:G:A	rs74796238	G	A	G	Hoxa9_MA0594.1	0	1	+	6.982587615172259	6.1174021024497085	GCCATCACTCA
chr3	34208155	34208156	chr3:34208156:T:C	rs75833203	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	34219875	34219876	chr3:34219876:A:G	rs4459843	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	34228105	34228106	chr3:34228106:G:C	rs4494876	G	C	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	34801948	34801949	chr3:34801949:G:T	rs56021155	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	34801949	34801950	chr3:34801950:A:G	rs56020763	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	35336809	35336810	chr3:35336810:G:A	rs4678768	G	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	35336842	35336843	chr3:35336843:A:C	rs4678769	A	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	35498631	35498632	chr3:35498632:G:A	rs1608315	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	35562565	35562566	chr3:35562566:A:T	rs6792656	A	T	T	Hoxa9_MA0594.1	3	1	+	8.729708420148697	1.8869717775410086	GCCATCCATCA
chr3	35641943	35641944	chr3:35641944:G:A	rs4678788	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	35733220	35733221	chr3:35733221:G:A	rs2037015	G	A	A	Hoxa9_MA0594.1	9	1	-	10.497539281484224	7.8728260628999855	GCCATCAATCT
chr3	36362458	36362459	chr3:36362459:C:T	rs1993923	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	36363378	36363379	chr3:36363379:G:T	rs34874227	G	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	36363399	36363400	chr3:36363400:T:A	rs116464279	T	A	T	Hoxa9_MA0594.1	7	1	-	7.615878323456167	0.7129446497532475	CCCCTCAATCA
chr3	36606875	36606876	chr3:36606876:C:T	rs17195741	C	T	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	37197832	37197833	chr3:37197833:G:C	rs4678945	G	C	G	Hoxa9_MA0594.1	5	1	-	8.220877979215818	6.258151190084522	GCAATCAATTA
chr3	37229677	37229678	chr3:37229678:T:C	chr3:37229678:T:C	T	C	T	Hoxa9_MA0594.1	3	1	-	8.007749574707272	5.025953147298413	GTCATCAATAA
chr3	37257722	37257723	chr3:37257723:C:T	rs17036169	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	37321676	37321677	chr3:37321677:C:T	rs80098730	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	37321698	37321699	chr3:37321699:G:A	rs13327269	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	37737044	37737045	chr3:37737045:G:A	rs76724945	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	37768236	37768237	chr3:37768237:A:G	rs11921296	A	G	A	Hoxa9_MA0594.1	10	1	+	9.139216866859913	2.502443881107144	ACCATGAATCA
chr3	37925249	37925250	chr3:37925250:T:C	rs76820403	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	37973027	37973028	chr3:37973028:C:T	rs180932255	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	37973046	37973047	chr3:37973047:C:T	rs11719474	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	37999854	37999855	chr3:37999855:G:A	rs76817219	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	38004918	38004919	chr3:38004919:C:T	chr3:38004919:C:T	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr3	38043888	38043889	chr3:38043889:A:C	rs9311178	A	C	a	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	38327478	38327479	chr3:38327479:G:C	rs151619	G	C	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	38440515	38440516	chr3:38440516:G:A	rs4679050	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	38585436	38585437	chr3:38585437:T:C	rs7432766	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	38704550	38704551	chr3:38704551:G:T	rs78425552	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	38797897	38797898	chr3:38797898:C:T	rs13075748	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	39038687	39038688	chr3:39038688:G:A	rs79815324	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	39276615	39276616	chr3:39276616:A:G	rs2965058	A	G	A	Hoxa9_MA0594.1	8	1	-	11.39900822046537	4.5257201703654815	GCAATAAATCA
chr3	39413823	39413824	chr3:39413824:G:A	rs12638378	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	39489577	39489578	chr3:39489578:C:A	rs77309543	C	A	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	39528221	39528222	chr3:39528222:C:T	rs816520	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	39531661	39531662	chr3:39531662:C:A	rs1708056	C	A	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	39531671	39531672	chr3:39531672:G:A	rs1708055	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	39548471	39548472	chr3:39548472:A:G	rs11129837	A	G	A	Hoxa9_MA0594.1	7	1	+	7.66103487567689	0.7581012019739704	CCTATGAATCA
chr3	39812732	39812733	chr3:39812733:A:G	rs12635275	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	40055179	40055180	chr3:40055180:T:G	rs6599078	T	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	40130330	40130331	chr3:40130331:T:G	rs76750610	T	G	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	40208024	40208025	chr3:40208025:T:C	rs533172719	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	40255796	40255797	chr3:40255797:T:C	rs7434088	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	40315066	40315067	chr3:40315067:A:C	rs56331709	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	40398344	40398345	chr3:40398345:C:T	rs9863737	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	40691008	40691009	chr3:40691009:A:C	rs528336839	A	C	A	Hoxa9_MA0594.1	10	1	+	8.899082879431504	6.435927636795342	AACATCAATCA
chr3	40691014	40691015	chr3:40691015:T:C	rs1317362	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	41200418	41200419	chr3:41200419:T:C	rs78048770	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	41486333	41486334	chr3:41486334:T:C	rs9865608	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	41486362	41486363	chr3:41486363:T:A	rs9865628	T	A	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	41604006	41604007	chr3:41604007:A:C	rs4973889	A	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	41955566	41955567	chr3:41955567:C:T	rs2272006	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	42032710	42032711	chr3:42032711:A:C	rs73075261	A	C	A	Hoxa9_MA0594.1	10	1	+	8.62774971750127	6.164594474865109	CCCATAAAACA
chr3	42032724	42032725	chr3:42032725:G:A	rs56030108	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	42046544	42046545	chr3:42046545:A:G	rs139998790	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	42762463	42762464	chr3:42762464:A:G	rs339669	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	43036543	43036544	chr3:43036544:G:A	rs35339908	G	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	43181063	43181064	chr3:43181064:T:C	rs113467321	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	43195174	43195175	chr3:43195175:C:T	rs13433894	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	43687021	43687022	chr3:43687022:G:A	rs117916714	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	43728164	43728165	chr3:43728165:G:A	rs17075943	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	43728168	43728169	chr3:43728169:C:A	rs113418384	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	43778520	43778521	chr3:43778521:G:A	rs12494982	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	43810981	43810982	chr3:43810982:G:A	rs114279366	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	43865793	43865794	chr3:43865794:G:A	rs779382693	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	44825466	44825467	chr3:44825467:C:G	rs78970572	C	G	c	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	44966805	44966806	chr3:44966806:T:C	rs6781650	T	C	C	Hoxa9_MA0594.1	1	1	+	8.247667105749517	9.139216866859913	ATCATGAATCA
chr3	45135969	45135970	chr3:45135970:C:T	rs7611004	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	45135993	45135994	chr3:45135994:C:G	rs62244466	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	45209733	45209734	chr3:45209734:C:A	rs78172658	C	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	45307717	45307718	chr3:45307718:C:T	rs62242409	C	T	C	Hoxa9_MA0594.1	1	1	+	8.069159876740681	7.177610115630285	GCCGTAAATCT
chr3	45387949	45387950	chr3:45387950:T:C	rs149911107	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	45642690	45642691	chr3:45642691:T:C	rs116079903	T	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	46080934	46080935	chr3:46080935:C:T	rs72889759	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	46277484	46277485	chr3:46277485:T:C	rs6441950	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	46386267	46386268	chr3:46386268:T:G	rs113116366	T	G	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	46439971	46439972	chr3:46439972:A:G	rs2298950	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	46451937	46451938	chr3:46451938:C:T	rs6766188	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	46740226	46740227	chr3:46740227:T:C	rs6803880	T	C	t	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	47537611	47537612	chr3:47537612:G:A	rs34634681	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	48087964	48087965	chr3:48087965:G:A	rs1325997524	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	48186803	48186804	chr3:48186804:G:A	rs3731493	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	48305494	48305495	chr3:48305495:G:T	rs35778847	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	48665172	48665173	chr3:48665173:A:G	rs9811318	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	48796181	48796182	chr3:48796182:G:T	rs11713694	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	49493277	49493278	chr3:49493278:A:G	rs7643845	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	49614714	49614715	chr3:49614715:T:C	rs1352889	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	50913313	50913314	chr3:50913314:G:A	rs28762180	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	51356827	51356828	chr3:51356828:G:C	rs2306430	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	51400165	51400166	chr3:51400166:A:G	rs3792408	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	51422558	51422559	chr3:51422559:G:A	rs62257541	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	52091938	52091939	chr3:52091939:G:C	rs79185624	G	C	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	52106865	52106866	chr3:52106866:C:T	rs142393739	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	52455057	52455058	chr3:52455058:A:G	rs2215466	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	52895724	52895725	chr3:52895725:T:C	rs73839529	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	53130509	53130510	chr3:53130510:G:C	rs78365485	G	C	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	53490023	53490024	chr3:53490024:G:A	rs312483	G	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	53882287	53882288	chr3:53882288:C:T	rs143876333	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	53892433	53892434	chr3:53892434:C:T	rs57592932	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	53974563	53974564	chr3:53974564:T:C	rs142172593	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	54305090	54305091	chr3:54305091:T:C	rs7627905	T	C	C	Hoxa9_MA0594.1	6	1	-	8.074332694835956	1.2567319090802995	CCCATCAAACA
chr3	54320482	54320483	chr3:54320483:T:C	rs9879885	T	C	C	Hoxa9_MA0594.1	6	1	-	7.8728260628999855	1.0552252771443293	GCCATCAATTT
chr3	54345952	54345953	chr3:54345953:A:G	rs9848889	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	54387884	54387885	chr3:54387885:G:A	rs1375521	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	54550024	54550025	chr3:54550025:T:A	rs941596774	T	A	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	54550025	54550026	chr3:54550026:C:A	rs186394987	C	A	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	54581943	54581944	chr3:54581944:A:G	rs6782115	A	G	a	Hoxa9_MA0594.1	0	1	+	9.064232820513286	9.929418333235837	ACAATAAATCT
chr3	54822390	54822391	chr3:54822391:C:A	rs114627007	C	A	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	54845755	54845756	chr3:54845756:C:T	rs769040504	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	54931357	54931358	chr3:54931358:A:T	rs75599010	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	55197394	55197395	chr3:55197395:C:T	rs12486298	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	55331264	55331265	chr3:55331265:G:A	rs9834227	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	55339254	55339255	chr3:55339255:G:A	rs187602925	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	55805512	55805513	chr3:55805513:G:A	rs4129823	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	56120292	56120293	chr3:56120293:C:A	rs13078548	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	56762377	56762378	chr3:56762378:G:C	rs78360991	G	C	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	56868909	56868910	chr3:56868910:T:C	rs11714628	T	C	T	Hoxa9_MA0594.1	3	1	-	9.283125442814011	6.301329015405153	GCCATACATCA
chr3	57078361	57078362	chr3:57078362:C:T	rs62250330	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	57112469	57112470	chr3:57112470:T:C	rs115963368	T	C	T	Hoxa9_MA0594.1	4	1	+	12.097509770600722	5.188754991285502	CCCATAAATCA
chr3	57133363	57133364	chr3:57133364:T:C	rs60446548	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	57135619	57135620	chr3:57135620:T:C	rs6807593	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	57145232	57145233	chr3:57145233:C:G	rs6808185	C	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	57148634	57148635	chr3:57148635:G:A	rs75205515	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	57157532	57157533	chr3:57157533:A:G	rs17825683	A	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	57183291	57183292	chr3:57183292:C:T	rs9835093	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	57335588	57335589	chr3:57335589:T:C	rs141854014	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	57350391	57350392	chr3:57350392:T:A	rs6771841	T	A	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	58076164	58076165	chr3:58076165:G:T	rs13099206	G	T	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	58077905	58077906	chr3:58077906:G:T	rs12715521	G	T	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr3	58199123	58199124	chr3:58199124:A:G	rs4681818	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	58249150	58249151	chr3:58249151:C:T	rs34005214	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	58307373	58307374	chr3:58307374:A:G	rs9818581	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	58539798	58539799	chr3:58539799:T:C	rs4309746	T	C	c	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	58562824	58562825	chr3:58562825:A:G	rs1257989995	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	58668509	58668510	chr3:58668510:C:T	rs900879	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	58668537	58668538	chr3:58668538:T:C	rs900878	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	59210543	59210544	chr3:59210544:A:T	rs73838109	A	T	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	59314547	59314548	chr3:59314548:T:C	rs1443933	T	C	T	Hoxa9_MA0594.1	7	1	-	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr3	59368288	59368289	chr3:59368289:G:C	rs4679645	G	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	59394672	59394673	chr3:59394673:A:C	rs875144	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	59463599	59463600	chr3:59463600:A:G	rs1587672	A	G	A	Hoxa9_MA0594.1	3	1	+	12.520546191379072	9.538749763970214	GCCATAAATCA
chr3	59470997	59470998	chr3:59470998:G:A	rs76952184	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	59511800	59511801	chr3:59511801:A:G	rs11924123	A	G	A	Hoxa9_MA0594.1	3	1	+	9.064232820513286	6.082436393104428	ACAATAAATCT
chr3	59560039	59560040	chr3:59560040:G:T	rs3905875	G	T	G	Hoxa9_MA0594.1	1	1	-	7.66103487567689	5.458174099117184	CCTATGAATCA
chr3	59732936	59732937	chr3:59732937:T:C	rs9311723	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	59759797	59759798	chr3:59759798:T:C	rs77380012	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	59759803	59759804	chr3:59759804:T:G	rs9874832	T	G	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	59765064	59765065	chr3:59765065:T:C	rs1126268	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	59982741	59982742	chr3:59982742:T:C	rs75255034	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	60011219	60011220	chr3:60011220:T:C	rs7612646	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	60011242	60011243	chr3:60011243:C:T	rs4679627	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	60104286	60104287	chr3:60104287:C:A	rs6766789	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	60143333	60143334	chr3:60143334:G:T	rs55827397	G	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	60675646	60675647	chr3:60675647:T:G	rs1716717	T	G	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	60720781	60720782	chr3:60720782:G:C	rs34450737	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	60746164	60746165	chr3:60746165:T:C	rs17679400	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	60802213	60802214	chr3:60802214:T:C	rs73836148	T	C	T	Hoxa9_MA0594.1	10	1	-	8.59659271700956	1.9598197312567915	AGCATAAATCA
chr3	60952970	60952971	chr3:60952971:T:C	rs2364300	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	60980473	60980474	chr3:60980474:T:C	rs113723265	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	61064508	61064509	chr3:61064509:C:G	rs57613432	C	G	c	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	61160083	61160084	chr3:61160084:C:T	rs2886377	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	61478769	61478770	chr3:61478770:G:C	rs7634625	G	C	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	61541869	61541870	chr3:61541870:G:T	rs76803894	G	T	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	61563597	61563598	chr3:61563598:T:G	rs9827952	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	61563620	61563621	chr3:61563621:A:G	rs9845678	A	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	61726366	61726367	chr3:61726367:C:T	rs10510867	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	61726368	61726369	chr3:61726369:T:C	rs11707030	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	61848877	61848878	chr3:61848878:T:G	chr3:61848878:T:G	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	62011884	62011885	chr3:62011885:G:C	rs6794623	G	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	62027448	62027449	chr3:62027449:T:C	rs4449312	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	62211823	62211824	chr3:62211824:T:G	rs138086660	T	G	T	Hoxa9_MA0594.1	3	1	-	8.16158747190031	4.233373047421068	GCAATACATCA
chr3	62629507	62629508	chr3:62629508:A:C	rs833665	A	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	62629516	62629517	chr3:62629517:C:T	rs833666	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	62837544	62837545	chr3:62837545:C:A	rs73097449	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	63087554	63087555	chr3:63087555:C:A	rs4688369	C	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	63280330	63280331	chr3:63280331:A:G	rs4688387	A	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	63544107	63544108	chr3:63544108:T:C	rs2135222	T	C	T	Hoxa9_MA0594.1	3	1	-	8.59659271700956	5.614796289600702	AGCATAAATCA
chr3	63559828	63559829	chr3:63559829:T:C	rs6765670	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	63655522	63655523	chr3:63655523:T:C	rs17069202	T	C	T	Hoxa9_MA0594.1	6	1	-	9.452499902096816	2.6348991163411597	AACATAAATCA
chr3	64047084	64047085	chr3:64047085:C:A	rs6769680	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	64196827	64196828	chr3:64196828:G:A	rs111558208	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	64239654	64239655	chr3:64239655:C:T	rs75343615	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	64410587	64410588	chr3:64410588:G:A	rs9830368	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	64501973	64501974	chr3:64501974:T:C	rs116405023	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	64684555	64684556	chr3:64684556:C:T	rs116703588	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	64691224	64691225	chr3:64691225:C:G	rs73124290	C	G	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	64945459	64945460	chr3:64945460:C:T	rs116645483	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	65170557	65170558	chr3:65170558:C:T	rs17072493	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	65170592	65170593	chr3:65170593:T:A	rs533216545	T	A	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	65604579	65604580	chr3:65604580:T:C	rs1524964	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	65620055	65620056	chr3:65620056:A:G	rs147054857	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	65752917	65752918	chr3:65752918:T:G	rs12496110	T	G	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	65846133	65846134	chr3:65846134:G:A	rs17379780	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	65972909	65972910	chr3:65972910:A:T	rs17074200	A	T	A	Hoxa9_MA0594.1	2	1	+	10.422554777021706	9.623761664808185	CCAATCAATCA
chr3	66138807	66138808	chr3:66138808:A:G	rs4133218	A	G	A	Hoxa9_MA0594.1	6	1	+	7.6543638533761875	0.8367630676205298	CCCATTAATCT
chr3	66249272	66249273	chr3:66249273:T:C	rs34404567	T	C	T	Hoxa9_MA0594.1	6	1	-	8.18560062555707	1.3679998398014137	ACCATAAAACA
chr3	66808920	66808921	chr3:66808921:C:T	rs6782706	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	66868952	66868953	chr3:66868953:T:C	rs1444048	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	66933608	66933609	chr3:66933609:T:G	rs1378850	T	G	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	67100140	67100141	chr3:67100141:C:A	rs6766938	C	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	67110260	67110261	chr3:67110261:T:C	rs60829667	T	C	T	Hoxa9_MA0594.1	3	1	-	11.544092747935409	8.56229632052655	CCCATCAATCA
chr3	67503498	67503499	chr3:67503499:G:A	rs7429940	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	67593646	67593647	chr3:67593647:T:C	rs1831324	T	C	C	Hoxa9_MA0594.1	10	1	+	7.6543638533761875	6.6607984979695605	CCCATTAATCT
chr3	67630559	67630560	chr3:67630560:G:A	rs11719952	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	67672491	67672492	chr3:67672492:G:C	rs11706254	G	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	67921142	67921143	chr3:67921143:C:G	rs17047097	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	68017339	68017340	chr3:68017340:G:A	rs6800897	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	68986956	68986957	chr3:68986957:T:G	rs6804484	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	69111034	69111035	chr3:69111035:C:T	rs73835727	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	69289121	69289122	chr3:69289122:C:T	rs144415053	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	69353013	69353014	chr3:69353014:C:T	rs1010315	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	69406082	69406083	chr3:69406083:C:G	rs72939735	C	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	69510492	69510493	chr3:69510493:G:A	rs78219465	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	69567662	69567663	chr3:69567663:T:C	rs904418	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	69657507	69657508	chr3:69657508:C:T	rs767380290	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	69678549	69678550	chr3:69678550:G:C	rs111438597	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	69806542	69806543	chr3:69806543:T:A	rs11917130	T	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	69871502	69871503	chr3:69871503:C:T	rs549071868	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	69972813	69972814	chr3:69972814:A:C	rs6549255	A	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	70011791	70011792	chr3:70011792:C:T	rs183455280	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	70170163	70170164	chr3:70170164:A:C	rs13099927	A	C	A	Hoxa9_MA0594.1	10	1	-	7.992188342502578	2.8250052439793425	GGCATAAATCT
chr3	70426085	70426086	chr3:70426086:C:T	rs11927774	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	70822247	70822248	chr3:70822248:A:T	rs1002200	A	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	71146891	71146892	chr3:71146892:C:T	rs58874807	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	71166347	71166348	chr3:71166348:A:G	rs9845218	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	71269888	71269889	chr3:71269889:A:T	rs2280519	A	T	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	71356454	71356455	chr3:71356455:C:T	rs148140267	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	71361481	71361482	chr3:71361482:T:A	rs537084315	T	A	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	71361511	71361512	chr3:71361512:G:A	rs75721650	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	71385761	71385762	chr3:71385762:C:T	rs7645749	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	71416002	71416003	chr3:71416003:T:C	rs115956375	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	71456192	71456193	chr3:71456193:C:T	rs6769097	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	71497887	71497888	chr3:71497888:G:A	rs6798507	G	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	71506053	71506054	chr3:71506054:C:A	rs17718736	C	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	71536536	71536537	chr3:71536537:T:C	rs137976747	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	71617383	71617384	chr3:71617384:C:T	rs864380	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	71677118	71677119	chr3:71677119:T:G	rs704293	T	G	T	Hoxa9_MA0594.1	10	1	-	8.59659271700956	6.1334374743734	AGCATAAATCA
chr3	71992780	71992781	chr3:71992781:T:C	rs11720188	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	72082302	72082303	chr3:72082303:A:G	rs55711729	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	72283308	72283309	chr3:72283309:G:C	rs6783293	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	72307140	72307141	chr3:72307141:C:T	rs61327071	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	72310375	72310376	chr3:72310376:G:A	rs73104732	G	A	G	Hoxa9_MA0594.1	0	1	+	7.700782005789437	6.835596493066886	GTCCTAAATCA
chr3	72310394	72310395	chr3:72310395:A:G	rs146954295	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	72495044	72495045	chr3:72495045:C:T	rs10511022	C	T	c	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	72623548	72623549	chr3:72623549:C:G	chr3:72623549:C:G	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	72820550	72820551	chr3:72820551:T:C	rs895493706	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	72973510	72973511	chr3:72973511:G:A	rs13081565	G	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	73037239	73037240	chr3:73037240:A:C	rs79773690	A	C	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr3	73103292	73103293	chr3:73103293:C:T	rs12631636	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	73107851	73107852	chr3:73107852:C:T	rs78748216	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	73295721	73295722	chr3:73295722:C:A	rs6795726	C	A	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	73319125	73319126	chr3:73319126:C:T	rs4677254	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	73326150	73326151	chr3:73326151:G:A	rs966163	G	A	A	Hoxa9_MA0594.1	5	1	-	8.219694000462	5.799554993132312	CAAATCAATCA
chr3	73394382	73394383	chr3:73394383:A:T	rs3845871	A	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	73394899	73394900	chr3:73394900:C:T	rs6549533	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	73419089	73419090	chr3:73419090:A:G	rs765807682	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr3	73572535	73572536	chr3:73572536:C:G	rs80297420	C	G	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	73572558	73572559	chr3:73572559:C:T	rs566539631	C	T	C	Hoxa9_MA0594.1	9	1	+	12.097509770600722	9.472796552016483	CCCATAAATCA
chr3	73668230	73668231	chr3:73668231:T:G	rs1511525	T	G	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	73719776	73719777	chr3:73719777:A:G	rs907342	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	73742492	73742493	chr3:73742493:T:G	rs10511027	T	G	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	73916198	73916199	chr3:73916199:T:C	rs1405393	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	73953732	73953733	chr3:73953733:A:G	rs1949929	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	74343688	74343689	chr3:74343689:G:A	rs1488802	G	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	74411744	74411745	chr3:74411745:C:T	rs11128385	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	74634774	74634775	chr3:74634775:T:A	rs80039419	T	A	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	74643773	74643774	chr3:74643774:G:A	rs540236090	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	74850783	74850784	chr3:74850784:T:G	rs73108855	T	G	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	75295682	75295683	chr3:75295683:A:G	rs73840476	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	75313597	75313598	chr3:75313598:G:A	rs11914770	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	75422737	75422738	chr3:75422738:A:T	rs3763578	A	T	.	Hoxa9_MA0594.1	6	1	-	8.814258917513376	11.655360678656521	ACCATATATCA
chr3	75429760	75429761	chr3:75429761:G:A	rs113049760	G	A	.	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	75429766	75429767	chr3:75429767:T:C	rs73842007	T	C	.	Hoxa9_MA0594.1	10	1	-	7.66103487567689	1.0242618899241211	CCTATGAATCA
chr3	75471601	75471602	chr3:75471602:G:A	rs3966936	G	A	.	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	75737203	75737204	chr3:75737204:T:A	rs80256387	T	A	t	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	75737229	75737230	chr3:75737230:T:C	rs3009024	T	C	t	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	76324395	76324396	chr3:76324396:A:C	rs1994986	A	C	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	76841729	76841730	chr3:76841730:A:G	rs1166951	A	G	A	Hoxa9_MA0594.1	4	1	-	8.614832151347091	1.7060773720318705	CTAATAAATCT
chr3	77427816	77427817	chr3:77427817:A:G	rs73099859	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	78086299	78086300	chr3:78086300:G:T	rs908904175	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	78109300	78109301	chr3:78109301:T:A	rs188311397	T	A	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	78258609	78258610	chr3:78258610:A:T	rs9309794	A	T	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	78375954	78375955	chr3:78375955:C:T	rs12714467	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	78828373	78828374	chr3:78828374:T:C	rs548699168	T	C	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	78951816	78951817	chr3:78951817:A:G	rs331168	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	79423632	79423633	chr3:79423633:G:C	rs1008273801	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	79423646	79423647	chr3:79423647:G:A	rs56964141	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	79491491	79491492	chr3:79491492:T:A	rs923346279	T	A	T	Hoxa9_MA0594.1	1	1	+	9.112852618472068	7.801541603022757	GTCATGAATCA
chr3	79651582	79651583	chr3:79651583:T:A	rs747357719	T	A	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	79806107	79806108	chr3:79806108:T:G	rs4856351	T	G	G	Hoxa9_MA0594.1	2	1	-	9.196147443905666	10.317685414819367	GAAATAAATCA
chr3	80160141	80160142	chr3:80160142:T:G	rs9860888	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	80332029	80332030	chr3:80332030:G:A	rs9835625	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	81190412	81190413	chr3:81190413:A:G	rs13078650	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	81743578	81743579	chr3:81743579:G:A	rs3772888	G	A	G	Hoxa9_MA0594.1	0	1	-	8.11177607157458	5.5668107263663105	CCCATGAATCT
chr3	81959591	81959592	chr3:81959592:T:C	rs7646645	T	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	83498897	83498898	chr3:83498898:T:C	rs6548882	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	83742068	83742069	chr3:83742069:T:C	rs11715563	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	84076727	84076728	chr3:84076728:A:G	chr3:84076728:A:G	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	84151381	84151382	chr3:84151382:T:C	rs6767473	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	84837039	84837040	chr3:84837040:G:A	rs141511046	G	A	G	Hoxa9_MA0594.1	0	1	-	7.959399534385545	5.414434189177277	CCAATCAATCC
chr3	85189727	85189728	chr3:85189728:G:A	rs77896578	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	85419068	85419069	chr3:85419069:T:G	rs1290784913	T	G	T	Hoxa9_MA0594.1	5	1	-	8.66099466428206	8.107577641616745	TTCATAAATCA
chr3	86212330	86212331	chr3:86212331:A:G	rs9833236	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	86758500	86758501	chr3:86758501:A:G	rs4855171	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	86888114	86888115	chr3:86888115:T:C	rs79938369	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	86923324	86923325	chr3:86923325:A:C	chr3:86923325:A:C	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	86985592	86985593	chr3:86985593:G:T	rs76921700	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	87125485	87125486	chr3:87125486:G:A	rs6788255	G	A	A	Hoxa9_MA0594.1	0	1	+	9.196147443905666	8.330961931183115	GAAATAAATCA
chr3	87125934	87125935	chr3:87125935:T:C	rs55669402	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	87202211	87202212	chr3:87202212:C:T	rs58547955	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	87202217	87202218	chr3:87202218:T:C	rs74791426	T	C	T	Hoxa9_MA0594.1	6	1	-	8.397354331692144	1.5797535459364878	GATATAAATCA
chr3	87226510	87226511	chr3:87226511:T:C	rs114302954	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	87229138	87229139	chr3:87229139:A:G	rs3828364	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	87311513	87311514	chr3:87311514:T:C	rs76107227	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	87333525	87333526	chr3:87333526:T:A	rs59329203	T	A	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	87515985	87515986	chr3:87515986:C:T	rs4859077	C	T	C	Hoxa9_MA0594.1	2	1	+	8.247667105749517	6.327336022622293	ATCATGAATCA
chr3	88958994	88958995	chr3:88958995:G:A	rs62271104	G	A	G	Hoxa9_MA0594.1	1	1	-	9.064232820513286	8.17268305940289	ACAATAAATCT
chr3	88962249	88962250	chr3:88962250:C:T	rs885393	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	88962267	88962268	chr3:88962268:C:G	rs4855820	C	G	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	88964155	88964156	chr3:88964156:G:A	rs953476	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	89002146	89002147	chr3:89002147:C:T	rs9310103	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	89535784	89535785	chr3:89535785:G:C	rs75768785	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	89682721	89682722	chr3:89682722:C:T	rs11928077	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	94217656	94217657	chr3:94217657:C:T	rs761356276	C	T	C	Hoxa9_MA0594.1	3	1	-	8.093782980194504	11.075579407603364	GTCGTCAATCA
chr3	94378456	94378457	chr3:94378457:C:T	rs1492017	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	94739514	94739515	chr3:94739515:C:A	rs77567421	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	94842934	94842935	chr3:94842935:A:C	rs7426707	A	C	-	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	95150454	95150455	chr3:95150455:A:G	rs12630818	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	95187255	95187256	chr3:95187256:T:C	rs190361701	T	C	T	Hoxa9_MA0594.1	10	1	-	9.472796552016483	2.836023566263714	CCCATAAATTA
chr3	95187266	95187267	chr3:95187267:A:T	rs72918626	A	T	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	95257793	95257794	chr3:95257794:A:G	rs11710032	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	95257794	95257795	chr3:95257795:A:C	rs11710033	A	C	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	95281241	95281242	chr3:95281242:T:C	rs184977313	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	95291707	95291708	chr3:95291708:G:A	rs761507526	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	96267379	96267380	chr3:96267380:A:G	rs56812082	A	G	a	Hoxa9_MA0594.1	4	1	-	10.084422038576625	3.175667259261404	CTAATAAATCA
chr3	96327694	96327695	chr3:96327695:A:G	rs9713732	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	96327706	96327707	chr3:96327707:G:A	rs9864430	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	96794838	96794839	chr3:96794839:C:T	rs79469982	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	97840497	97840498	chr3:97840498:T:C	rs7621778	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	97935432	97935433	chr3:97935433:C:T	rs188327717	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	98010483	98010484	chr3:98010484:A:G	rs832027	A	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	98565598	98565599	chr3:98565599:C:T	rs1569234	C	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	98696038	98696039	chr3:98696039:A:G	rs72930917	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	98721176	98721177	chr3:98721177:T:C	rs278363	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	98971213	98971214	chr3:98971214:A:G	rs35936923	A	G	A	Hoxa9_MA0594.1	7	1	+	8.45982798789041	1.5568943141874905	CCAATGAATCA
chr3	99033804	99033805	chr3:99033805:G:A	rs809575	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	99100804	99100805	chr3:99100805:T:G	rs7637231	T	G	T	Hoxa9_MA0594.1	7	1	-	8.908361207066799	3.9238196535252987	GGCATCAATCA
chr3	99100983	99100984	chr3:99100984:A:G	rs7634953	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	99256998	99256999	chr3:99256999:C:T	rs112907577	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	99394315	99394316	chr3:99394316:T:C	rs1481545	T	C	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	99871472	99871473	chr3:99871473:C:T	rs545044063	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	100347783	100347784	chr3:100347784:G:T	rs6784494	G	T	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	100557079	100557080	chr3:100557080:A:G	rs7631877	A	G	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	100831805	100831806	chr3:100831806:G:A	rs9840549	G	A	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	100837991	100837992	chr3:100837992:G:A	rs73135589	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	101310766	101310767	chr3:101310767:T:C	rs72936163	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	101971148	101971149	chr3:101971149:C:T	rs190317714	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	102060808	102060809	chr3:102060809:C:T	rs4683865	C	T	C	Hoxa9_MA0594.1	9	1	+	7.6696269796303795	5.04491376104614	ACCATGAATCT
chr3	102084207	102084208	chr3:102084208:G:A	rs3856765	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	102089281	102089282	chr3:102089282:G:A	rs1996523	G	A	g	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	102290441	102290442	chr3:102290442:A:T	rs6808327	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	102629545	102629546	chr3:102629546:C:T	rs13090044	C	T	C	Hoxa9_MA0594.1	0	1	-	9.112852618472068	8.247667105749517	GTCATGAATCA
chr3	102855112	102855113	chr3:102855113:G:A	rs2196969	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	102855132	102855133	chr3:102855133:A:G	rs9857306	A	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	102883500	102883501	chr3:102883501:A:G	rs697788	A	G	A	Hoxa9_MA0594.1	3	1	+	9.112852618472068	6.131056191063209	GTCATGAATCA
chr3	102953555	102953556	chr3:102953556:C:T	rs9790049	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	103188686	103188687	chr3:103188687:A:G	rs144036787	A	G	A	Hoxa9_MA0594.1	4	1	-	9.581365958804113	2.672611179488892	CCCATGAATCA
chr3	103296408	103296409	chr3:103296409:T:G	rs112224079	T	G	T	Hoxa9_MA0594.1	8	1	+	8.773111023127315	3.8182150931888463	CAAATAAATCA
chr3	103678375	103678376	chr3:103678376:A:C	rs2175470	A	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	103728162	103728163	chr3:103728163:G:A	rs10937571	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	103947273	103947274	chr3:103947274:A:G	rs9846345	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	104276473	104276474	chr3:104276474:C:T	rs2895276	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	104555985	104555986	chr3:104555986:T:C	rs876905	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	105746412	105746413	chr3:105746413:A:G	rs13059405	A	G	G	Hoxa9_MA0594.1	10	1	+	8.364858248347181	1.728085262594412	CTCATATATCA
chr3	105767410	105767411	chr3:105767411:T:C	rs3772515	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	105823590	105823591	chr3:105823591:T:C	rs1867194	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	105825191	105825192	chr3:105825192:T:C	rs6791765	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	105899579	105899580	chr3:105899580:C:G	rs77710339	C	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	105967309	105967310	chr3:105967310:C:T	rs191785470	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	106144226	106144227	chr3:106144227:G:A	rs142371157	G	A	G	Hoxa9_MA0594.1	0	1	-	11.205960009490326	8.66099466428206	CTCATAAATCA
chr3	106176643	106176644	chr3:106176644:G:A	rs72926232	G	A	A	Hoxa9_MA0594.1	2	1	-	9.02967993770463	7.109348854577409	CCCATAAATAA
chr3	106192691	106192692	chr3:106192692:C:A	rs7633167	C	A	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	106280606	106280607	chr3:106280607:G:A	rs17780017	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	106334371	106334372	chr3:106334372:A:G	rs117765188	A	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	106345879	106345880	chr3:106345880:T:C	rs1349992738	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	106345896	106345897	chr3:106345897:G:A	rs192577967	G	A	G	Hoxa9_MA0594.1	5	1	-	7.864522907426146	5.444383900096458	ACCATCCATCA
chr3	106345919	106345920	chr3:106345920:C:T	rs79152900	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	106380029	106380030	chr3:106380030:A:C	rs62255016	A	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	106525773	106525774	chr3:106525774:G:A	rs73203280	G	A	g	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	106566607	106566608	chr3:106566608:C:T	rs12639414	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	106580232	106580233	chr3:106580233:A:C	rs61070612	A	C	A	Hoxa9_MA0594.1	10	1	-	9.182953099595478	4.015770001072243	CTCATCAATCT
chr3	106674162	106674163	chr3:106674163:A:G	rs7641939	A	G	a	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	107064944	107064945	chr3:107064945:A:T	rs9815459	A	T	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	107209044	107209045	chr3:107209045:T:C	rs138929991	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	107909328	107909329	chr3:107909329:A:G	rs3910485	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	107913943	107913944	chr3:107913944:T:C	rs7615091	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	107957960	107957961	chr3:107957961:C:T	rs13090662	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	107994481	107994482	chr3:107994482:T:G	chr3:107994482:T:G	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	108183235	108183236	chr3:108183236:C:T	rs10511268	C	T	T	Hoxa9_MA0594.1	0	1	-	8.612424164967203	7.747238652244652	GTCATCAATCC
chr3	108223967	108223968	chr3:108223968:T:G	rs1299076	T	G	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	108487058	108487059	chr3:108487059:T:C	rs6437784	T	C	T	Hoxa9_MA0594.1	0	1	+	9.552544425392455	12.097509770600722	TCCATAAATCA
chr3	108489935	108489936	chr3:108489936:C:A	rs535328493	C	A	c	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	108489936	108489937	chr3:108489937:G:A	rs114381359	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	108964751	108964752	chr3:108964752:A:G	rs2593935	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	109242541	109242542	chr3:109242542:A:G	rs1881925	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	109612172	109612173	chr3:109612173:G:A	rs62281684	G	A	G	Hoxa9_MA0594.1	0	1	+	7.618418680842992	6.753233168120441	GCTGTAAATCA
chr3	109631675	109631676	chr3:109631676:T:C	rs1106193	T	C	T	Hoxa9_MA0594.1	3	1	-	7.6696269796303795	4.68783055222152	ACCATGAATCT
chr3	109926746	109926747	chr3:109926747:T:A	rs67243448	T	A	T	Hoxa9_MA0594.1	9	1	+	8.450866189019125	8.007749574707272	GTCATCAATTA
chr3	110995911	110995912	chr3:110995912:C:T	rs9835919	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	111312134	111312135	chr3:111312135:C:T	rs112805943	C	T	C	Hoxa9_MA0594.1	2	1	+	7.801541603022757	5.881210519895534	GACATGAATCA
chr3	111332629	111332630	chr3:111332630:C:T	rs2950968	C	T	c	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	111589886	111589887	chr3:111589887:A:T	rs62275481	A	T	a	Hoxa9_MA0594.1	6	1	+	8.027829768240773	5.186728007097628	CTCATCAATTA
chr3	111751620	111751621	chr3:111751621:G:C	rs10934106	G	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	111854993	111854994	chr3:111854994:G:A	rs1282982	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	111971920	111971921	chr3:111971921:A:G	rs1994731	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	112096430	112096431	chr3:112096431:A:G	rs340157	A	G	G	Hoxa9_MA0594.1	10	1	-	11.050956304149539	10.057390948742912	GCCATAAATCT
chr3	112551143	112551144	chr3:112551144:T:C	rs16859758	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	112579688	112579689	chr3:112579689:G:A	rs77517158	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	112633940	112633941	chr3:112633941:G:A	rs12636231	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	112641191	112641192	chr3:112641192:T:C	rs28364604	T	C	T	Hoxa9_MA0594.1	8	1	+	10.763810917546127	3.8905228674462373	ATCATAAATCA
chr3	112641205	112641206	chr3:112641206:G:A	rs28364603	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	112643340	112643341	chr3:112643341:A:G	rs6772337	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	112643354	112643355	chr3:112643355:C:G	rs182081858	C	G	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	112676972	112676973	chr3:112676973:A:G	rs540578082	A	G	A	Hoxa9_MA0594.1	0	1	+	8.01767889594621	8.88286440866876	ACAATGAATCA
chr3	112676973	112676974	chr3:112676974:C:A	rs75650791	C	A	C	Hoxa9_MA0594.1	1	1	+	8.01767889594621	5.814818119386504	ACAATGAATCA
chr3	112686203	112686204	chr3:112686204:C:T	rs848270	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	112781915	112781916	chr3:112781916:A:G	rs2688602	A	G	A	Hoxa9_MA0594.1	3	1	+	7.565650261440604	4.583853834031746	GCCATAAAGCA
chr3	112786775	112786776	chr3:112786776:C:T	rs13082544	C	T	C	Hoxa9_MA0594.1	0	1	-	9.130625221022317	8.265439708299766	GCTATAAATCT
chr3	112861221	112861222	chr3:112861222:A:G	rs9842637	A	G	G	Hoxa9_MA0594.1	7	1	+	10.004402379582464	3.1014687058795434	GCCATGAATCA
chr3	112929277	112929278	chr3:112929278:G:T	rs6438117	G	T	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	113158424	113158425	chr3:113158425:G:A	rs140211403	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	113194461	113194462	chr3:113194462:A:G	rs9288978	A	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	113254269	113254270	chr3:113254270:A:G	rs775219	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	113553360	113553361	chr3:113553361:G:A	rs1513287	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	114120387	114120388	chr3:114120388:C:T	rs11715906	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	114721527	114721528	chr3:114721528:T:C	rs73857644	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	114841633	114841634	chr3:114841634:A:G	rs6802717	A	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	114849273	114849274	chr3:114849274:T:C	rs9821637	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	115228356	115228357	chr3:115228357:A:G	rs9289012	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	115272396	115272397	chr3:115272397:G:A	rs17756244	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	115615426	115615427	chr3:115615427:A:T	rs560252873	A	T	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	115694231	115694232	chr3:115694232:C:T	rs3732626	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	115704963	115704964	chr3:115704964:G:T	rs17760881	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr3	115827532	115827533	chr3:115827533:C:T	rs2918217	C	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	115928739	115928740	chr3:115928740:G:A	rs73149050	G	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	115962886	115962887	chr3:115962887:A:C	rs13075363	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	116059986	116059987	chr3:116059987:T:C	rs147540512	T	C	T	Hoxa9_MA0594.1	1	1	-	9.452499902096816	8.59659271700956	AACATAAATCA
chr3	116135902	116135903	chr3:116135903:G:A	rs73140912	G	A	G	Hoxa9_MA0594.1	2	1	-	10.652542986825011	8.73221190369779	CTCATCAATCA
chr3	116195999	116196000	chr3:116196000:A:T	rs998806	A	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	116389651	116389652	chr3:116389652:T:C	rs6438315	T	C	C	Hoxa9_MA0594.1	2	1	+	8.397354331692144	10.317685414819367	GATATAAATCA
chr3	116708261	116708262	chr3:116708262:T:C	rs1401073	T	C	C	Hoxa9_MA0594.1	2	1	+	9.708665347141455	11.628996430268678	GTTATAAATCA
chr3	116749670	116749671	chr3:116749671:C:T	rs2163663	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	117045162	117045163	chr3:117045163:A:G	rs12497655	A	G	A	Hoxa9_MA0594.1	3	1	+	8.51281655705086	5.531020129642001	CCAATAAATCC
chr3	117168576	117168577	chr3:117168577:C:T	rs9880688	C	T	T	Hoxa9_MA0594.1	5	1	-	8.88286440866876	11.39900822046537	GCAATGAATCA
chr3	117175743	117175744	chr3:117175744:C:T	rs2137212	C	T	c	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	117243955	117243956	chr3:117243956:C:T	rs1381854	C	T	T	Hoxa9_MA0594.1	0	1	+	8.00320666478695	5.458241319578682	CCCATAAATTT
chr3	117249227	117249228	chr3:117249228:A:G	rs1011983	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	117290971	117290972	chr3:117290972:A:C	rs13092499	A	C	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	117798779	117798780	chr3:117798780:T:C	rs9825411	T	C	T	Hoxa9_MA0594.1	7	1	-	10.652542986825011	3.7496093131220922	CTCATCAATCA
chr3	117798804	117798805	chr3:117798805:C:T	rs74696602	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	117811927	117811928	chr3:117811928:C:T	rs62264956	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	117872508	117872509	chr3:117872509:A:G	rs7622841	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	117874635	117874636	chr3:117874636:C:A	rs7433864	C	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	117884267	117884268	chr3:117884268:T:C	rs17665813	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	118783020	118783021	chr3:118783021:A:C	rs798577	A	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	118783029	118783030	chr3:118783030:T:C	rs7626839	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	119237658	119237659	chr3:119237659:G:A	rs6785453	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	119442602	119442603	chr3:119442603:C:T	rs112113709	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	119642096	119642097	chr3:119642097:C:T	rs8422	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	120044143	120044144	chr3:120044144:T:C	rs112432269	T	C	C	Hoxa9_MA0594.1	1	1	+	10.507458459354975	11.39900822046537	GTAATAAATCA
chr3	120090757	120090758	chr3:120090758:G:A	rs334559	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	120421194	120421195	chr3:120421195:C:A	rs36068602	C	A	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	120648475	120648476	chr3:120648476:C:T	rs112488469	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	120673470	120673471	chr3:120673471:A:G	rs74356584	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	120673478	120673479	chr3:120673479:C:T	rs79072367	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	120685403	120685404	chr3:120685404:C:T	rs6801568	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	120781598	120781599	chr3:120781599:T:A	rs2229308	T	A	A	Hoxa9_MA0594.1	7	1	-	9.632353768761673	2.7294200950587535	ACCATCAATCT
chr3	121508592	121508593	chr3:121508593:C:T	rs114056092	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	121825393	121825394	chr3:121825394:T:C	rs79488379	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	122036175	122036176	chr3:122036176:G:A	rs4974400	G	A	G	Hoxa9_MA0594.1	1	1	-	8.592331766899832	7.700782005789437	GCCCTAAATCA
chr3	122146211	122146212	chr3:122146212:C:T	rs937630	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	122178730	122178731	chr3:122178731:G:A	rs11714681	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	122217430	122217431	chr3:122217431:T:C	rs11717321	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	122540792	122540793	chr3:122540793:T:C	rs28365795	T	C	T	Hoxa9_MA0594.1	3	1	-	10.497539281484224	7.515742854075367	GCCATCAATCT
chr3	122610532	122610533	chr3:122610533:C:T	rs76273623	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	122688011	122688012	chr3:122688012:C:G	rs812048	C	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	122936548	122936549	chr3:122936549:C:G	rs73193872	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	122945031	122945032	chr3:122945032:T:C	rs73856757	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	123110142	123110143	chr3:123110143:C:T	rs6797673	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	123155631	123155632	chr3:123155632:C:T	rs560178720	C	T	c	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	123373300	123373301	chr3:123373301:A:C	rs77380967	A	C	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	123402438	123402439	chr3:123402439:A:G	rs12496583	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	123444194	123444195	chr3:123444195:G:T	chr3:123444195:G:T	G	T	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	123663983	123663984	chr3:123663984:A:G	rs820324	A	G	A	Hoxa9_MA0594.1	7	1	+	9.285628926363104	2.382695252660184	CTTATAAATCA
chr3	123745286	123745287	chr3:123745287:T:C	rs77678196	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	124053915	124053916	chr3:124053916:A:G	rs551511291	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	124131540	124131541	chr3:124131541:T:G	rs79327587	T	G	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	124352391	124352392	chr3:124352392:T:G	rs6772915	T	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	124727056	124727057	chr3:124727057:C:A	rs16835912	C	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	124879072	124879073	chr3:124879073:T:C	rs116319932	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	124982343	124982344	chr3:124982344:T:C	rs11718916	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	125125964	125125965	chr3:125125965:C:T	rs549791177	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	125125994	125125995	chr3:125125995:T:C	rs115538987	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr3	125763322	125763323	chr3:125763323:G:A	rs9869769	G	A	.	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	125942896	125942897	chr3:125942897:T:A	rs112176486	T	A	t	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	125961205	125961206	chr3:125961206:G:C	rs10934738	G	C	c	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	126003568	126003569	chr3:126003569:G:A	rs571051713	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	126032788	126032789	chr3:126032789:T:C	rs9840962	T	C	C	Hoxa9_MA0594.1	3	1	-	8.306671999370346	5.3248755719614875	CCCATCCATCA
chr3	126085341	126085342	chr3:126085342:C:A	rs11706188	C	A	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	126265603	126265604	chr3:126265604:A:G	rs144927956	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	126468730	126468731	chr3:126468731:G:A	rs1091370	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	127020447	127020448	chr3:127020448:T:C	rs6439030	T	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	127124379	127124380	chr3:127124380:C:G	rs143114285	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	127173332	127173333	chr3:127173333:G:A	rs141604537	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	127425182	127425183	chr3:127425183:C:G	rs73196826	C	G	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	127425187	127425188	chr3:127425188:A:T	rs10934814	A	T	A	Hoxa9_MA0594.1	3	1	+	9.050786138279621	2.2080494956719328	GCCATAAAACA
chr3	127524299	127524300	chr3:127524300:C:T	rs372837068	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	127776374	127776375	chr3:127776375:G:T	rs68125058	G	T	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	128076899	128076900	chr3:128076900:C:T	rs145227301	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	128077161	128077162	chr3:128077162:C:G	rs2010972	C	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	128495150	128495151	chr3:128495151:G:A	rs35006112	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	128499082	128499083	chr3:128499083:G:A	rs748793012	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	128611293	128611294	chr3:128611294:T:C	rs2253151	T	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	128632210	128632211	chr3:128632211:T:C	rs9868579	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	129448399	129448400	chr3:129448400:A:G	rs10470431	A	G	G	Hoxa9_MA0594.1	4	1	-	8.952964889792172	2.044210110476952	CCAATCAATCT
chr3	129469179	129469180	chr3:129469180:T:G	rs2285350	T	G	T	Hoxa9_MA0594.1	7	1	-	11.544092747935409	6.559551194393908	CCCATCAATCA
chr3	129521851	129521852	chr3:129521852:A:G	rs544226162	A	G	A	Hoxa9_MA0594.1	7	1	+	7.8637947703911975	0.9608610966882778	GCAGTCAATCA
chr3	129954132	129954133	chr3:129954133:C:T	rs1708884	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	129954148	129954149	chr3:129954149:A:G	rs1708233	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	130097469	130097470	chr3:130097470:G:A	rs73866094	G	A	g	Hoxa9_MA0594.1	9	1	-	8.082954538162921	5.458241319578682	TCCATAAATCT
chr3	130259223	130259224	chr3:130259224:T:G	rs73210801	T	G	T	Hoxa9_MA0594.1	1	1	-	8.219694000462	10.422554777021706	CAAATCAATCA
chr3	130457888	130457889	chr3:130457889:T:C	rs79627529	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	130523913	130523914	chr3:130523914:G:A	rs9870791	G	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	130597512	130597513	chr3:130597513:T:C	rs55706033	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	130933302	130933303	chr3:130933303:G:T	rs116197736	G	T	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	131729378	131729379	chr3:131729379:A:G	rs562602973	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	131908146	131908147	chr3:131908147:T:C	rs1225004	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	132187749	132187750	chr3:132187750:T:C	rs1395006	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	132230182	132230183	chr3:132230183:G:C	rs76782105	G	C	G	Hoxa9_MA0594.1	9	1	-	8.952964889792172	2.1546339280913247	CCAATCAATCT
chr3	132405665	132405666	chr3:132405666:T:C	rs116784274	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	132545810	132545811	chr3:132545811:C:T	rs72996127	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	132848564	132848565	chr3:132848565:T:C	rs115945165	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	132879468	132879469	chr3:132879469:A:G	rs74922154	A	G	A	Hoxa9_MA0594.1	8	1	+	9.050786138279621	7.565650261440604	GCCATAAAACA
chr3	133023565	133023566	chr3:133023566:G:C	rs6782975	G	C	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	133755158	133755159	chr3:133755159:C:G	rs8177224	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	134069804	134069805	chr3:134069805:A:G	rs4355278	A	G	a	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	134327773	134327774	chr3:134327774:T:C	rs999947	T	C	C	Hoxa9_MA0594.1	7	1	-	7.801541603022757	0.8986079293198377	GACATGAATCA
chr3	134377037	134377038	chr3:134377038:A:G	rs144924397	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	134389055	134389056	chr3:134389056:T:A	rs73863806	T	A	T	Hoxa9_MA0594.1	7	1	-	9.123953740605721	2.2210200669028004	CCCATTAATCA
chr3	134433116	134433117	chr3:134433117:A:G	rs9790169	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	134473037	134473038	chr3:134473038:C:G	rs9841180	C	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	134647124	134647125	chr3:134647125:G:A	rs1015531162	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr3	134743173	134743174	chr3:134743174:G:T	rs75506857	G	T	G	Hoxa9_MA0594.1	0	1	+	7.541247136946303	4.573245370959683	GCCATGAATCC
chr3	134762053	134762054	chr3:134762054:A:G	rs4955491	A	G	A	Hoxa9_MA0594.1	6	1	+	7.301113149517894	0.48351236376223583	GACATCAATCC
chr3	134912135	134912136	chr3:134912136:C:T	rs72971611	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	134912179	134912180	chr3:134912180:T:C	rs36208	T	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	135133689	135133690	chr3:135133690:G:A	rs11712544	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	135382400	135382401	chr3:135382401:G:A	rs16842962	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	135476437	135476438	chr3:135476438:G:A	rs187669517	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	135546556	135546557	chr3:135546557:G:A	rs972869	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	135702326	135702327	chr3:135702327:G:C	rs9826170	G	C	G	Hoxa9_MA0594.1	9	1	-	8.689816197693718	1.8914852359928702	CTCATGAATCA
chr3	136169799	136169800	chr3:136169800:A:G	rs73222236	A	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	136753018	136753019	chr3:136753019:C:T	rs111556758	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	136902874	136902875	chr3:136902875:A:C	rs4678452	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	137051101	137051102	chr3:137051102:A:G	rs4678222	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	137264699	137264700	chr3:137264700:G:T	rs12152206	G	T	G	Hoxa9_MA0594.1	1	1	-	8.306671999370346	6.103811222810641	CCCATCCATCA
chr3	138003032	138003033	chr3:138003033:A:G	rs4678398	A	G	G	Hoxa9_MA0594.1	5	1	+	9.736370122260793	7.2202263104641835	CTCATAAATCT
chr3	138226349	138226350	chr3:138226350:C:T	rs4678258	C	T	C	Hoxa9_MA0594.1	0	1	+	9.736370122260793	7.191404777052525	CTCATAAATCT
chr3	138413591	138413592	chr3:138413592:C:T	rs1871516	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	138547792	138547793	chr3:138547793:G:A	rs12632794	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	138630854	138630855	chr3:138630855:G:T	rs553399307	G	T	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	138830166	138830167	chr3:138830167:A:G	rs2881900	A	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	139292133	139292134	chr3:139292134:C:T	rs574778021	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	139468532	139468533	chr3:139468533:T:C	rs3772878	T	C	t	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	139646724	139646725	chr3:139646725:G:A	rs7639773	G	A	G	Hoxa9_MA0594.1	0	1	-	8.581246790906087	6.03628144569782	CTCATAAATTA
chr3	139758846	139758847	chr3:139758847:C:T	rs7615512	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	139758871	139758872	chr3:139758872:C:T	rs7615524	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	140076729	140076730	chr3:140076730:T:C	rs190799533	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	140176892	140176893	chr3:140176893:T:A	rs74840333	T	A	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	140527215	140527216	chr3:140527216:A:G	rs567167	A	G	A	Hoxa9_MA0594.1	0	1	+	9.452499902096816	10.317685414819367	AACATAAATCA
chr3	140569206	140569207	chr3:140569207:A:G	rs16846209	A	G	A	Hoxa9_MA0594.1	7	1	+	8.655440400273676	1.7525067265707555	GTCATTAATCA
chr3	141012579	141012580	chr3:141012580:T:C	rs957093	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	141015692	141015693	chr3:141015693:C:T	rs16851001	C	T	C	Hoxa9_MA0594.1	5	1	-	9.112852618472068	11.628996430268678	GTCATGAATCA
chr3	141094792	141094793	chr3:141094793:C:G	rs534811416	C	G	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	141094801	141094802	chr3:141094802:A:G	rs6762085	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	141256051	141256052	chr3:141256052:G:A	rs72982505	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	141273910	141273911	chr3:141273911:A:G	rs4683592	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	141328016	141328017	chr3:141328017:G:A	rs4683600	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	141558183	141558184	chr3:141558184:C:T	rs80157048	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	141919061	141919062	chr3:141919062:T:C	rs74799291	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	141998849	141998850	chr3:141998850:A:G	chr3:141998850:A:G	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	142252383	142252384	chr3:142252384:G:A	rs67629905	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	142863487	142863488	chr3:142863488:T:C	rs73232752	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	142963896	142963897	chr3:142963897:A:T	rs879888209	A	T	-	Hoxa9_MA0594.1	8	1	-	8.485324786288448	5.015564733188995	CGCATCAATCA
chr3	143069690	143069691	chr3:143069691:C:T	rs9851353	C	T	c	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	143100145	143100146	chr3:143100146:C:T	rs114896085	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	143127875	143127876	chr3:143127876:T:C	rs11919563	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	143152004	143152005	chr3:143152005:C:T	rs4428144	C	T	c	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	143266874	143266875	chr3:143266875:T:C	rs2289491	T	C	T	Hoxa9_MA0594.1	3	1	-	9.895832972794834	6.914036545385976	GCCATAAATTA
chr3	143363132	143363133	chr3:143363133:C:T	rs16846337	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	143418891	143418892	chr3:143418892:T:A	rs752964627	T	A	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	143752989	143752990	chr3:143752990:G:A	rs9881418	G	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	143787276	143787277	chr3:143787277:T:C	rs74875558	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	143814894	143814895	chr3:143814895:A:C	rs13070587	A	C	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr3	144181180	144181181	chr3:144181181:G:T	rs1550781	G	T	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	144399517	144399518	chr3:144399518:T:G	rs9852498	T	G	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	144407632	144407633	chr3:144407633:C:T	rs13059486	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	144522652	144522653	chr3:144522653:T:C	rs1182797	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	144530564	144530565	chr3:144530565:T:C	rs1613644	T	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	144560456	144560457	chr3:144560457:T:A	rs77427247	T	A	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	144630204	144630205	chr3:144630205:G:A	rs708479	G	A	A	Hoxa9_MA0594.1	0	1	+	7.581196251050087	6.716010738327537	GCCATAAAACT
chr3	144750833	144750834	chr3:144750834:A:C	rs116561564	A	C	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	144970387	144970388	chr3:144970388:G:T	rs13065774	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	144989938	144989939	chr3:144989939:A:G	rs62276260	A	G	A	Hoxa9_MA0594.1	3	1	+	9.708665347141455	6.7268689197325955	GTTATAAATCA
chr3	144989959	144989960	chr3:144989960:C:A	rs34948596	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	145015471	145015472	chr3:145015472:C:T	rs12490662	C	T	C	Hoxa9_MA0594.1	2	1	+	8.159236377169226	6.238905294042002	GTCATAAAACA
chr3	145220840	145220841	chr3:145220841:G:A	rs1348658	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	145269110	145269111	chr3:145269111:A:G	rs1445372	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	145812455	145812456	chr3:145812456:G:A	rs2864425	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	146024565	146024566	chr3:146024566:A:C	rs4438625	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	146158218	146158219	chr3:146158219:G:A	rs74413309	G	A	G	Hoxa9_MA0594.1	0	1	-	7.994175372278161	5.449210027069893	CCAGTAAATCA
chr3	146274284	146274285	chr3:146274285:A:G	rs11929382	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	146422049	146422050	chr3:146422050:A:G	rs80256186	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	146503287	146503288	chr3:146503288:A:G	rs78696604	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	146503310	146503311	chr3:146503311:C:T	rs75387262	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	146682088	146682089	chr3:146682089:T:C	rs17370212	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	146739237	146739238	chr3:146739238:C:G	rs573500635	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	146739267	146739268	chr3:146739268:C:T	rs9810060	C	T	C	Hoxa9_MA0594.1	0	1	-	8.417211793056513	7.552026280333961	GCAGTAAATCA
chr3	146757171	146757172	chr3:146757172:G:C	rs147310276	G	C	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	146972427	146972428	chr3:146972428:T:C	rs7611207	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	147120509	147120510	chr3:147120510:A:G	rs115468095	A	G	A	Hoxa9_MA0594.1	7	1	+	9.15524832447614	2.252314650773221	GTTATCAATCA
chr3	147229552	147229553	chr3:147229553:T:C	rs9833001	T	C	-	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	147368480	147368481	chr3:147368481:T:C	rs1910466	T	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	147730828	147730829	chr3:147730829:A:G	rs73866497	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	147988873	147988874	chr3:147988874:G:A	rs149669221	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	148107579	148107580	chr3:148107580:C:T	rs6793167	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	148528215	148528216	chr3:148528216:T:C	rs1916218	T	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	148727514	148727515	chr3:148727515:C:T	rs12695898	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	148737230	148737231	chr3:148737231:G:T	rs12695914	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	148737259	148737260	chr3:148737260:C:T	rs12695915	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	148757741	148757742	chr3:148757742:G:A	rs1492083	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	148903289	148903290	chr3:148903290:T:C	rs35558383	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	148956062	148956063	chr3:148956063:T:C	rs17783804	T	C	C	Hoxa9_MA0594.1	4	1	+	8.34024025881841	1.431485479503189	GGAATAAATCA
chr3	148956084	148956085	chr3:148956085:A:C	rs77226059	A	C	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	148956087	148956088	chr3:148956088:A:G	rs16861207	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	149316691	149316692	chr3:149316692:G:A	rs142590910	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	149545118	149545119	chr3:149545119:G:A	rs6809815	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	149656606	149656607	chr3:149656607:C:T	rs11924280	C	T	.	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	150090191	150090192	chr3:150090192:G:A	rs180836288	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr3	150130139	150130140	chr3:150130140:G:A	rs13326757	G	A	G	Hoxa9_MA0594.1	2	1	-	7.075594521334054	5.155263438206831	GCCGTAAATCC
chr3	150220547	150220548	chr3:150220548:T:A	rs923226	T	A	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	150233879	150233880	chr3:150233880:C:T	rs7649386	C	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr3	150278915	150278916	chr3:150278916:A:G	rs13095267	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	150369303	150369304	chr3:150369304:C:T	rs116041795	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	150470256	150470257	chr3:150470257:T:C	rs114274955	T	C	T	Hoxa9_MA0594.1	10	1	-	8.16158747190031	1.5248144861475401	GCAATACATCA
chr3	150470727	150470728	chr3:150470728:T:C	rs61483057	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	150557034	150557035	chr3:150557035:A:G	rs73001332	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	150867839	150867840	chr3:150867840:T:A	rs4680007	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr3	150906702	150906703	chr3:150906703:T:C	rs16863022	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	151058794	151058795	chr3:151058795:T:A	rs9833515	T	A	A	Hoxa9_MA0594.1	8	1	+	7.838158659038301	4.368398605938849	GTCATCCATCA
chr3	151058812	151058813	chr3:151058813:G:A	rs358959	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	151216529	151216530	chr3:151216530:A:G	rs1920397	A	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	151226491	151226492	chr3:151226492:C:G	rs6809388	C	G	C	Hoxa9_MA0594.1	1	1	-	7.7868232361530945	10.845591197800056	GGAATCAATCA
chr3	151384663	151384664	chr3:151384664:A:G	rs1491974	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	151535882	151535883	chr3:151535883:A:T	rs77897161	A	T	A	Hoxa9_MA0594.1	4	1	-	7.8728260628999855	0.9640712835847656	GCCATCAATTT
chr3	151563178	151563179	chr3:151563179:T:A	rs7622305	T	A	T	Hoxa9_MA0594.1	8	1	+	8.209854543006394	4.740094489906942	GCCATATATCT
chr3	151563186	151563187	chr3:151563187:C:T	rs114055849	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	151580770	151580771	chr3:151580771:T:G	rs144947120	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	151778039	151778040	chr3:151778040:C:T	rs62276069	C	T	T	Hoxa9_MA0594.1	1	1	+	12.097509770600722	11.205960009490326	CCCATAAATCA
chr3	152061494	152061495	chr3:152061495:A:G	rs1531604	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	152121635	152121636	chr3:152121636:G:A	rs646635	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	152121637	152121638	chr3:152121638:C:T	rs472976	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	152148671	152148672	chr3:152148672:T:C	rs601007	T	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	152148701	152148702	chr3:152148702:C:T	rs556598	C	T	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	152243684	152243685	chr3:152243685:C:T	rs990673178	C	T	C	Hoxa9_MA0594.1	0	1	+	9.256408009457576	6.711442664249308	CCCATATATCA
chr3	152270239	152270240	chr3:152270240:C:G	rs6803021	C	G	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	152359835	152359836	chr3:152359836:A:G	rs2055355	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	152360257	152360258	chr3:152360258:A:G	rs75976846	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	152636395	152636396	chr3:152636396:G:C	rs78643660	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	152908913	152908914	chr3:152908914:G:A	rs12497415	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	152934947	152934948	chr3:152934948:A:G	rs17452880	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	153000795	153000796	chr3:153000796:G:C	rs4680030	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	153131037	153131038	chr3:153131038:C:T	rs6803774	C	T	C	Hoxa9_MA0594.1	3	1	-	8.093782980194504	11.075579407603364	GTCGTCAATCA
chr3	153145710	153145711	chr3:153145711:T:C	rs79504568	T	C	T	Hoxa9_MA0594.1	6	1	-	7.959399534385545	1.1417987486298882	CCAATCAATCC
chr3	153159542	153159543	chr3:153159543:A:G	rs78206890	A	G	A	Hoxa9_MA0594.1	10	1	+	11.628996430268678	4.9922234445159095	GTCATAAATCA
chr3	153625750	153625751	chr3:153625751:C:A	rs144406471	C	A	C	Hoxa9_MA0594.1	2	1	+	11.101943655991207	9.980405685077507	ACCATCAATCA
chr3	153674127	153674128	chr3:153674128:G:A	rs73872615	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	153680791	153680792	chr3:153680792:A:G	rs1523283	A	G	a	Hoxa9_MA0594.1	3	1	+	11.101943655991207	8.120147228582349	ACCATCAATCA
chr3	153680797	153680798	chr3:153680798:C:G	rs1523282	C	G	C	Hoxa9_MA0594.1	9	1	+	11.101943655991207	4.30361269429036	ACCATCAATCA
chr3	153753431	153753432	chr3:153753432:G:C	rs544280	G	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	153892280	153892281	chr3:153892281:A:T	rs787955	A	T	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	154193205	154193206	chr3:154193206:C:T	rs400529	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	154401051	154401052	chr3:154401052:A:G	rs9832013	A	G	A	Hoxa9_MA0594.1	1	1	-	8.689816197693718	9.581365958804113	CTCATGAATCA
chr3	154690727	154690728	chr3:154690728:G:A	rs147101512	G	A	g	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	154791781	154791782	chr3:154791782:G:C	chr3:154791782:G:C	G	C	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	154975155	154975156	chr3:154975156:C:A	rs57409759	C	A	-	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	155106895	155106896	chr3:155106896:A:C	rs3773896	A	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr3	155748142	155748143	chr3:155748143:T:C	rs358741	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	156010860	156010861	chr3:156010861:G:C	rs819872	G	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr3	156174654	156174655	chr3:156174655:T:C	rs4258915	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	156174677	156174678	chr3:156174678:G:T	rs13058807	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	156658246	156658247	chr3:156658247:C:G	rs12696042	C	G	C	Hoxa9_MA0594.1	0	1	+	9.341231971375704	9.764268392154055	CACATCAATCA
chr3	156676188	156676189	chr3:156676189:C:T	rs115844714	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	156762538	156762539	chr3:156762539:T:G	rs12493636	T	G	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	157128850	157128851	chr3:157128851:T:C	rs57370275	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	157248503	157248504	chr3:157248504:C:G	rs74319750	C	G	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	157528265	157528266	chr3:157528266:G:A	rs74374373	G	A	g	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	157660921	157660922	chr3:157660922:T:A	rs1553187	T	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr3	157753924	157753925	chr3:157753925:G:A	rs73160698	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	157786100	157786101	chr3:157786101:C:T	rs1552486	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	158165928	158165929	chr3:158165929:T:G	rs73874313	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	158642265	158642266	chr3:158642266:C:T	rs13317399	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	158789582	158789583	chr3:158789583:G:A	rs61794859	G	A	g	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	159341517	159341518	chr3:159341518:A:G	rs9809459	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr3	159618895	159618896	chr3:159618896:G:A	rs75788005	G	A	g	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	159751465	159751466	chr3:159751466:T:C	rs532541212	T	C	T	Hoxa9_MA0594.1	3	1	-	9.552544425392455	6.570747997983595	TCCATAAATCA
chr3	159829879	159829880	chr3:159829880:G:A	rs115413577	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	159982766	159982767	chr3:159982767:G:A	rs59967043	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	159982775	159982776	chr3:159982776:T:C	rs73874600	T	C	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	160032386	160032387	chr3:160032387:G:A	chr3:160032387:G:A	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	160577682	160577683	chr3:160577683:T:C	rs982569731	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	160641892	160641893	chr3:160641893:G:C	rs76877180	G	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	160878447	160878448	chr3:160878448:T:C	rs11922296	T	C	C	Hoxa9_MA0594.1	8	1	-	9.050786138279621	7.565650261440604	GCCATAAAACA
chr3	160947730	160947731	chr3:160947731:A:G	rs112335899	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	161051173	161051174	chr3:161051174:T:C	rs9860182	T	C	C	Hoxa9_MA0594.1	10	1	+	7.390499134806127	6.3969337793995	CCCATACATCT
chr3	161051827	161051828	chr3:161051828:A:C	chr3:161051828:A:C	A	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	161101435	161101436	chr3:161101436:A:G	rs35474158	A	G	A	Hoxa9_MA0594.1	3	1	+	9.342415950129519	6.360619522720662	GCCATCAATTA
chr3	161308724	161308725	chr3:161308725:G:A	rs6809256	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	161338505	161338506	chr3:161338506:G:A	rs1036142192	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	161348505	161348506	chr3:161348506:C:T	rs336577	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	161382881	161382882	chr3:161382882:T:C	rs459923	T	C	C	Hoxa9_MA0594.1	8	1	+	9.285628926363104	2.412340876263215	CTTATAAATCA
chr3	161440667	161440668	chr3:161440668:A:G	rs7633221	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	161490185	161490186	chr3:161490186:C:G	rs7624747	C	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	161560359	161560360	chr3:161560360:T:G	rs62279583	T	G	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	161576841	161576842	chr3:161576842:C:G	rs13087257	C	G	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr3	161576873	161576874	chr3:161576874:A:G	rs75465712	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	161793588	161793589	chr3:161793589:T:A	rs36024447	T	A	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	161852201	161852202	chr3:161852202:T:C	rs899565486	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	162012813	162012814	chr3:162012814:C:G	rs9840976	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	162218669	162218670	chr3:162218670:G:T	rs34819866	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	162218671	162218672	chr3:162218672:T:G	rs12636428	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	162317217	162317218	chr3:162317218:C:G	rs9833281	C	G	g	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	162365272	162365273	chr3:162365273:A:G	rs9863256	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	162365296	162365297	chr3:162365297:A:G	rs75165935	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	162400814	162400815	chr3:162400815:T:A	rs6775708	T	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	162599458	162599459	chr3:162599459:C:T	rs11717231	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	162600205	162600206	chr3:162600206:G:T	rs28784569	G	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	162699869	162699870	chr3:162699870:T:C	rs7615986	T	C	C	Hoxa9_MA0594.1	1	1	-	9.894648994041017	9.03874180895376	CACATAAATCA
chr3	162704781	162704782	chr3:162704782:T:G	rs12489679	T	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	162864875	162864876	chr3:162864876:T:C	rs12696170	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	162864907	162864908	chr3:162864908:A:G	rs12696171	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	163131568	163131569	chr3:163131569:T:C	rs9990207	T	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	163186081	163186082	chr3:163186082:C:T	rs34866863	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	163363527	163363528	chr3:163363528:T:C	rs7644478	T	C	C	Hoxa9_MA0594.1	3	1	-	11.967129168713758	8.985332741304902	GCCATCAATCA
chr3	164401476	164401477	chr3:164401477:A:G	rs9873142	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	164401489	164401490	chr3:164401490:C:A	rs9835558	C	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	165181698	165181699	chr3:165181699:T:C	rs9854819	T	C	T	Hoxa9_MA0594.1	8	1	+	9.60598952037383	2.73270147027394	GTCATCAATCT
chr3	165669677	165669678	chr3:165669678:G:C	rs188980833	G	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	165713161	165713162	chr3:165713162:T:G	rs645127	T	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	166029513	166029514	chr3:166029514:G:A	rs1584485	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	166029513	166029514	chr3:166029514:G:C	chr3:166029514:G:C	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	166058989	166058990	chr3:166058990:C:T	rs73879463	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	166303809	166303810	chr3:166303810:T:C	rs635354	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	167148534	167148535	chr3:167148535:C:T	rs76301291	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	167376677	167376678	chr3:167376678:A:G	rs13087122	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	167431403	167431404	chr3:167431404:C:T	rs72622523	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	167717202	167717203	chr3:167717203:A:T	rs78439970	A	T	A	Hoxa9_MA0594.1	6	1	+	9.45271635848298	6.611614597339836	GCCATAAATAA
chr3	167813120	167813121	chr3:167813121:A:G	rs16851499	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	168197453	168197454	chr3:168197454:C:T	rs62273338	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	168197455	168197456	chr3:168197456:T:C	rs3851392	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	169022683	169022684	chr3:169022684:T:G	rs13078842	T	G	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	169041685	169041686	chr3:169041686:T:C	rs147574826	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	169218081	169218082	chr3:169218082:C:T	rs1685642	C	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	169541923	169541924	chr3:169541924:G:C	rs79313553	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	169548443	169548444	chr3:169548444:C:T	rs11706777	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	169579544	169579545	chr3:169579545:C:G	rs16854110	C	G	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	169815928	169815929	chr3:169815929:T:A	rs9878316	T	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	170469406	170469407	chr3:170469407:T:G	rs77033584	T	G	T	Hoxa9_MA0594.1	8	1	+	8.044303216718815	3.0894072867803457	GTAATAAATCC
chr3	170471382	170471383	chr3:170471383:T:C	rs55853796	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	170477594	170477595	chr3:170477595:G:A	rs2098516	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	170507635	170507636	chr3:170507636:G:A	chr3:170507636:G:A	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	170596729	170596730	chr3:170596730:T:C	rs112637120	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr3	170723398	170723399	chr3:170723399:C:G	rs75981322	C	G	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	171089433	171089434	chr3:171089434:A:G	rs114829508	A	G	A	Hoxa9_MA0594.1	3	1	+	8.59659271700956	5.614796289600702	AGCATAAATCA
chr3	171176279	171176280	chr3:171176280:T:C	rs12487421	T	C	T	Hoxa9_MA0594.1	4	1	+	8.219694000462	1.3109392211467799	CAAATCAATCA
chr3	171240045	171240046	chr3:171240046:T:C	rs57824131	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	171363586	171363587	chr3:171363587:T:C	rs576294549	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	171447509	171447510	chr3:171447510:A:G	rs66483175	A	G	A	Hoxa9_MA0594.1	5	1	+	9.552544425392455	7.036400613595844	TCCATAAATCA
chr3	171746889	171746890	chr3:171746890:G:A	rs6445026	G	A	g	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	171790334	171790335	chr3:171790335:C:A	rs767373934	C	A	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr3	171792447	171792448	chr3:171792448:C:T	rs3934620	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr3	171802039	171802040	chr3:171802040:C:T	rs112496157	C	T	C	Hoxa9_MA0594.1	1	1	+	8.88286440866876	7.991314647558364	GCAATGAATCA
chr3	171814093	171814094	chr3:171814094:T:C	rs371438769	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	171851830	171851831	chr3:171851831:C:T	rs67067117	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr3	171883179	171883180	chr3:171883180:T:G	rs35729586	T	G	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	172074754	172074755	chr3:172074755:C:T	rs572835112	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	172074755	172074756	chr3:172074756:G:A	rs142039310	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	172108247	172108248	chr3:172108248:C:T	rs6801727	C	T	C	Hoxa9_MA0594.1	2	1	+	7.415122238259951	5.494791155132728	CTCATCCATCA
chr3	172356170	172356171	chr3:172356171:G:A	rs525983	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	172357176	172357177	chr3:172357177:A:G	rs11715666	A	G	a	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	172396530	172396531	chr3:172396531:G:A	rs71310507	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	172558105	172558106	chr3:172558106:G:A	rs16845834	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	172579195	172579196	chr3:172579196:A:C	rs11920548	A	C	A	Hoxa9_MA0594.1	4	1	-	10.97597179968702	4.0672170203718	CCAATAAATCA
chr3	172641432	172641433	chr3:172641433:T:C	rs234004	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	172691439	172691440	chr3:172691440:T:G	rs77399448	T	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	172777931	172777932	chr3:172777932:A:G	rs6445088	A	G	G	Hoxa9_MA0594.1	10	1	-	8.154171777578652	7.160606422172025	CCTATCAATCT
chr3	172844743	172844744	chr3:172844744:G:T	rs9290452	G	T	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	172867615	172867616	chr3:172867616:T:C	rs6805701	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	172876462	172876463	chr3:172876463:C:T	rs4299505	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr3	172905210	172905211	chr3:172905211:C:T	rs12629617	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	172905249	172905250	chr3:172905250:A:G	rs12634917	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	173402312	173402313	chr3:173402313:C:T	rs536445	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr3	174155379	174155380	chr3:174155380:A:G	rs2902011	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	174218961	174218962	chr3:174218962:A:G	rs1421422	A	G	G	Hoxa9_MA0594.1	8	1	-	9.452499902096816	2.5792118519969276	AACATAAATCA
chr3	174242234	174242235	chr3:174242235:G:A	rs1188919343	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	174338470	174338471	chr3:174338471:T:C	rs1356812	T	C	T	Hoxa9_MA0594.1	5	1	+	7.6543638533761875	10.074502860705875	CCCATTAATCT
chr3	175150326	175150327	chr3:175150327:T:C	rs1115118	T	C	T	Hoxa9_MA0594.1	1	1	+	8.561166597372587	9.45271635848298	GTCATAAATAA
chr3	175151045	175151046	chr3:175151046:C:G	rs936481	C	G	C	Hoxa9_MA0594.1	1	1	+	8.01767889594621	4.958910934299248	ACAATGAATCA
chr3	175151457	175151458	chr3:175151458:G:C	rs936479	G	C	G	Hoxa9_MA0594.1	9	1	-	9.642272946632424	2.8439419849315772	ATAATAAATCA
chr3	175151468	175151469	chr3:175151469:G:C	rs936478	G	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	175231752	175231753	chr3:175231753:C:A	rs35675620	C	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	175231765	175231766	chr3:175231766:A:G	rs6795681	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	175473257	175473258	chr3:175473258:G:A	rs79963640	G	A	G	Hoxa9_MA0594.1	9	1	-	10.210393894880813	7.585680676296574	ATCATCAATCA
chr3	176787735	176787736	chr3:176787736:T:A	rs6775882	T	A	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	176843154	176843155	chr3:176843155:G:A	rs75444093	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	177284045	177284046	chr3:177284046:G:A	rs58315913	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr3	177513825	177513826	chr3:177513826:G:A	rs4857702	G	A	G	Hoxa9_MA0594.1	0	1	+	7.0122332387752895	6.147047726052739	GCCATCAAGCA
chr3	177567961	177567962	chr3:177567962:T:G	rs80219964	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	177589796	177589797	chr3:177589797:A:G	rs540401	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	177704042	177704043	chr3:177704043:A:G	rs34066617	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	177730637	177730638	chr3:177730638:C:G	rs9290625	C	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	177835255	177835256	chr3:177835256:G:A	rs77175887	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	178040968	178040969	chr3:178040969:T:C	rs10936961	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	178141110	178141111	chr3:178141111:G:A	rs6774415	G	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr3	178277874	178277875	chr3:178277875:C:T	rs111398983	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	178311251	178311252	chr3:178311252:G:A	rs6772500	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	178384589	178384590	chr3:178384590:T:G	chr3:178384590:T:G	T	G	T	Hoxa9_MA0594.1	8	1	+	8.061415128681777	3.106519198743308	CTAATCAATCT
chr3	178588890	178588891	chr3:178588891:A:G	rs6771851	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	178754973	178754974	chr3:178754974:G:A	rs74612618	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	178851916	178851917	chr3:178851917:A:G	rs7653581	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	178897345	178897346	chr3:178897346:G:T	rs180845540	G	T	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	178949306	178949307	chr3:178949307:G:A	rs7638121	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	178969350	178969351	chr3:178969351:G:A	rs78758745	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	179074451	179074452	chr3:179074452:G:A	rs73050055	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	179323970	179323971	chr3:179323971:G:C	rs73043413	G	C	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	179482994	179482995	chr3:179482995:C:T	rs73054707	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr3	179671669	179671670	chr3:179671670:T:C	rs73052579	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	179804843	179804844	chr3:179804844:T:C	rs1990740	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr3	180934133	180934134	chr3:180934134:A:G	rs17537540	A	G	A	Hoxa9_MA0594.1	4	1	-	8.477230437406968	1.568475658091749	ACCATCAATTA
chr3	182122973	182122974	chr3:182122974:T:C	rs185539828	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr3	182389296	182389297	chr3:182389297:A:G	rs16833098	A	G	A	Hoxa9_MA0594.1	3	1	+	10.159406543039145	7.177610115630285	GTCATAAATCT
chr3	182605740	182605741	chr3:182605741:G:A	rs36083760	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	182726784	182726785	chr3:182726785:A:G	rs13088942	A	G	A	Hoxa9_MA0594.1	7	1	+	7.390499134806127	0.48756546110320714	CCCATACATCT
chr3	182914063	182914064	chr3:182914064:T:C	rs181551200	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	182917556	182917557	chr3:182917557:G:T	rs1876755	G	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	183101759	183101760	chr3:183101760:T:C	rs147354256	T	C	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	183194737	183194738	chr3:183194738:C:G	rs571761	C	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	183226493	183226494	chr3:183226494:C:T	rs4859159	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	183371347	183371348	chr3:183371348:C:T	rs149381319	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	183381283	183381284	chr3:183381284:C:T	rs16857419	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr3	183517852	183517853	chr3:183517853:C:T	rs981594485	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	183725614	183725615	chr3:183725615:A:G	rs262976	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	183860115	183860116	chr3:183860116:G:A	rs6809370	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	183939017	183939018	chr3:183939018:C:G	rs6790814	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	184404492	184404493	chr3:184404493:T:C	rs7648581	T	C	C	Hoxa9_MA0594.1	3	1	-	7.118210716167953	4.136414288759093	CCCATGAATCC
chr3	184440216	184440217	chr3:184440217:A:C	rs13065454	A	C	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	184572559	184572560	chr3:184572560:G:A	rs9862375	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	184594969	184594970	chr3:184594970:C:T	rs73188413	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	184642787	184642788	chr3:184642788:C:T	rs151186915	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	184647656	184647657	chr3:184647657:T:C	rs6780696	T	C	T	Hoxa9_MA0594.1	7	1	-	9.503973926077597	2.601040252374678	GCCATCAATCC
chr3	184648931	184648932	chr3:184648932:T:C	rs143318265	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	184648946	184648947	chr3:184648947:C:T	rs10937184	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	184742312	184742313	chr3:184742313:A:C	rs16859163	A	C	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr3	184757247	184757248	chr3:184757248:C:T	rs115381803	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr3	184757248	184757249	chr3:184757249:G:A	rs4686396	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	184812520	184812521	chr3:184812521:G:A	rs759463244	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	185042525	185042526	chr3:185042526:G:A	rs80288863	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	185794828	185794829	chr3:185794829:C:A	rs750213534	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	185831345	185831346	chr3:185831346:A:T	rs73175581	A	T	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	185880763	185880764	chr3:185880764:T:C	rs12107951	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr3	186024175	186024176	chr3:186024176:G:A	rs111491839	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr3	186024201	186024202	chr3:186024202:G:A	rs12330780	G	A	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr3	186078065	186078066	chr3:186078066:A:C	rs12638263	A	C	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr3	186127672	186127673	chr3:186127673:T:C	rs78793054	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	186432844	186432845	chr3:186432845:G:C	rs6444130	G	C	t	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr3	186464699	186464700	chr3:186464700:C:A	rs6764306	C	A	c	Hoxa9_MA0594.1	3	1	+	7.727146254177281	11.655360678656521	ACCCTAAATCA
chr3	186568996	186568997	chr3:186568997:C:T	rs58971510	C	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr3	186669989	186669990	chr3:186669990:A:G	rs3733008	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr3	186916284	186916285	chr3:186916285:G:A	rs9876387	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	186917938	186917939	chr3:186917939:A:G	rs148579933	A	G	A	Hoxa9_MA0594.1	10	1	+	7.1426138406622535	0.5058408549094846	CCCATAAAGCA
chr3	186980087	186980088	chr3:186980088:G:T	rs78949521	G	T	g	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	186992996	186992997	chr3:186992997:G:A	rs3888059	G	A	A	Hoxa9_MA0594.1	2	1	-	6.52217749866874	4.601846415541517	GCCGTCAATCC
chr3	187010776	187010777	chr3:187010777:A:G	rs4686830	A	G	A	Hoxa9_MA0594.1	2	1	-	9.15524832447614	11.075579407603364	GTTATCAATCA
chr3	187013960	187013961	chr3:187013961:G:C	rs7619989	G	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr3	187041399	187041400	chr3:187041400:G:A	rs79473458	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr3	187104840	187104841	chr3:187104841:G:A	rs849753	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	187104852	187104853	chr3:187104853:A:G	rs849752	A	G	A	Hoxa9_MA0594.1	10	1	+	8.66099466428206	2.0242216785292895	TTCATAAATCA
chr3	187228132	187228133	chr3:187228133:G:T	rs9878529	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	187375903	187375904	chr3:187375904:G:A	rs1878861	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr3	187769737	187769738	chr3:187769738:C:T	rs10937321	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr3	187887526	187887527	chr3:187887527:C:T	rs6444265	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr3	187934165	187934166	chr3:187934166:C:G	rs570459	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr3	187966839	187966840	chr3:187966840:T:G	chr3:187966840:T:G	T	G	T	Hoxa9_MA0594.1	10	1	-	7.605819354503911	5.1426641118677505	GTCATCAAACA
chr3	187974867	187974868	chr3:187974868:C:T	rs11706015	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr3	188037345	188037346	chr3:188037346:T:C	chr3:188037346:T:C	T	C	T	Hoxa9_MA0594.1	7	1	-	7.700782005789437	0.7978483320865171	GTCCTAAATCA
chr3	188037352	188037353	chr3:188037353:C:T	rs956517385	C	T	C	Hoxa9_MA0594.1	0	1	-	7.700782005789437	6.835596493066886	GTCCTAAATCA
chr3	188482708	188482709	chr3:188482709:T:A	rs74941116	T	A	T	Hoxa9_MA0594.1	6	1	-	10.627919883371188	7.786818122228043	CCCATAAATCT
chr3	188508570	188508571	chr3:188508571:A:G	rs10937349	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	188695330	188695331	chr3:188695331:A:C	rs9864066	A	C	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	188708071	188708072	chr3:188708072:T:C	rs141317986	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr3	188798370	188798371	chr3:188798371:A:G	rs4686995	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	188901698	188901699	chr3:188901699:A:G	rs41412152	A	G	A	Hoxa9_MA0594.1	3	1	+	8.952964889792172	5.9711684623833134	CCAATCAATCT
chr3	188936805	188936806	chr3:188936806:C:G	rs10490877	C	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	189170910	189170911	chr3:189170911:C:T	rs1562758	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	189287028	189287029	chr3:189287029:C:T	rs9682650	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr3	189372491	189372492	chr3:189372492:C:T	rs62289730	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	189569101	189569102	chr3:189569102:G:A	rs7615734	G	A	g	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	189664265	189664266	chr3:189664266:C:G	rs114024501	C	G	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	189664293	189664294	chr3:189664294:G:A	rs10937404	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	189766718	189766719	chr3:189766719:T:C	rs11708278	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	189928225	189928226	chr3:189928226:A:G	rs73202034	A	G	A	Hoxa9_MA0594.1	3	1	+	11.655360678656521	8.673564251247663	ACCATAAATCA
chr3	190004862	190004863	chr3:190004863:T:A	rs182907923	T	A	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr3	190044743	190044744	chr3:190044744:C:T	rs6444412	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	190094442	190094443	chr3:190094443:T:A	rs563126919	T	A	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr3	190094446	190094447	chr3:190094447:C:T	rs77889151	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr3	190305585	190305586	chr3:190305586:T:C	rs9842214	T	C	T	Hoxa9_MA0594.1	3	1	-	8.702990986792262	5.721194559383403	CCCATCTATCA
chr3	190570375	190570376	chr3:190570376:T:C	rs75392769	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr3	190722974	190722975	chr3:190722975:C:T	rs2362586	C	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr3	190874774	190874775	chr3:190874775:T:C	rs73192280	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	191124191	191124192	chr3:191124192:A:C	chr3:191124192:A:C	A	C	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr3	191124194	191124195	chr3:191124195:A:C	chr3:191124195:A:C	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	191161126	191161127	chr3:191161127:G:A	rs73199617	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	191192574	191192575	chr3:191192575:G:A	rs144412060	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr3	191291371	191291372	chr3:191291372:G:C	rs2117545	G	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr3	191296456	191296457	chr3:191296457:C:T	rs6769894	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	191313419	191313420	chr3:191313420:G:C	rs9856015	G	C	C	Hoxa9_MA0594.1	9	1	-	8.11177607157458	1.3134451098737319	CCCATGAATCT
chr3	191584866	191584867	chr3:191584867:T:G	rs6444565	T	G	G	Hoxa9_MA0594.1	7	1	-	9.623761664808185	4.639220111266686	CCTATCAATCA
chr3	191584893	191584894	chr3:191584894:A:G	rs6444566	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	191695722	191695723	chr3:191695723:G:A	rs73204676	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr3	191781280	191781281	chr3:191781281:T:G	rs6792568	T	G	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr3	192367899	192367900	chr3:192367900:G:A	rs6444634	G	A	A	Hoxa9_MA0594.1	3	1	+	7.022605952173604	10.004402379582464	GCCGTGAATCA
chr3	192642043	192642044	chr3:192642044:C:G	rs1875735	C	G	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr3	192658192	192658193	chr3:192658193:T:C	rs6798557	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	192845429	192845430	chr3:192845430:T:C	rs9858084	T	C	t	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	193168957	193168958	chr3:193168958:G:C	rs12637945	G	C	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr3	193350947	193350948	chr3:193350948:A:G	rs1038718	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	193636165	193636166	chr3:193636166:G:A	rs6807435	G	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr3	193737521	193737522	chr3:193737522:T:C	rs1057435693	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr3	194003404	194003405	chr3:194003405:A:G	chr3:194003405:A:G	A	G	A	Hoxa9_MA0594.1	7	1	+	8.58753084576043	1.6845971720575106	ACCATAAATAA
chr3	194043927	194043928	chr3:194043928:A:G	rs71635024	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr3	194213022	194213023	chr3:194213023:T:C	rs139676688	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr3	194213033	194213034	chr3:194213034:A:G	rs187239106	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr3	194226100	194226101	chr3:194226101:C:T	rs56196085	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr3	194293728	194293729	chr3:194293729:G:T	rs35564538	G	T	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr3	194323988	194323989	chr3:194323989:C:G	rs556896638	C	G	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr3	194326276	194326277	chr3:194326277:A:G	rs1051535716	A	G	a	Hoxa9_MA0594.1	7	1	+	8.431006454478752	1.5280727807758319	TCAATAAATCA
chr3	194365121	194365122	chr3:194365122:C:T	rs531236248	C	T	C	Hoxa9_MA0594.1	2	1	+	8.093782980194504	6.173451897067282	GTCGTCAATCA
chr3	194368143	194368144	chr3:194368144:A:C	rs6802406	A	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr3	194368154	194368155	chr3:194368155:C:G	rs6789051	C	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	194368181	194368182	chr3:194368182:C:T	rs6789147	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr3	194599152	194599153	chr3:194599153:C:T	rs1706016	C	T	C	Hoxa9_MA0594.1	2	1	+	8.294678504924521	6.374347421797297	GACATCAATCT
chr3	194757821	194757822	chr3:194757822:T:C	rs73079320	T	C	T	Hoxa9_MA0594.1	6	1	-	8.18560062555707	1.3679998398014137	ACCATAAAACA
chr3	194757894	194757895	chr3:194757895:T:C	rs113818001	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr3	194769170	194769171	chr3:194769171:C:G	rs151029506	C	G	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr3	194769309	194769310	chr3:194769310:G:C	rs914261093	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr3	194925122	194925123	chr3:194925123:A:T	rs112369985	A	T	T	Hoxa9_MA0594.1	6	1	+	8.007749574707272	5.166647813564126	GTCATCAATAA
chr3	194925828	194925829	chr3:194925829:T:A	rs77877008	T	A	T	Hoxa9_MA0594.1	8	1	+	7.608170449234994	4.1384103961355425	GCAATCCATCA
chr3	195017493	195017494	chr3:195017494:T:A	rs2676918	T	A	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	195068302	195068303	chr3:195068303:G:A	rs2720930	G	A	A	Hoxa9_MA0594.1	1	1	-	10.97597179968702	10.084422038576625	CCAATAAATCA
chr3	195154410	195154411	chr3:195154411:A:G	rs62285221	A	G	G	Hoxa9_MA0594.1	1	1	+	9.196147443905666	8.34024025881841	GAAATAAATCA
chr3	195254101	195254102	chr3:195254102:C:G	rs11917438	C	G	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr3	195351396	195351397	chr3:195351397:G:A	rs10804414	G	A	g	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr3	195453071	195453072	chr3:195453072:A:G	rs78961457	A	G	A	Hoxa9_MA0594.1	3	1	+	7.118210716167953	4.136414288759093	CCCATGAATCC
chr3	195512825	195512826	chr3:195512826:C:T	rs34345417	C	T	.	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	195557540	195557541	chr3:195557541:T:C	rs862063	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr3	195709174	195709175	chr3:195709175:C:T	rs963947719	C	T	C	Hoxa9_MA0594.1	3	1	+	8.592331766899832	5.677809548771385	GCCCTAAATCA
chr3	195740056	195740057	chr3:195740057:C:G	rs573887940	C	G	c	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	195740101	195740102	chr3:195740102:G:C	rs7610129	G	C	N	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	195859396	195859397	chr3:195859397:C:A	rs944304900	C	A	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr3	195894835	195894836	chr3:195894836:C:T	rs12491124	C	T	c	Hoxa9_MA0594.1	1	1	+	8.306671999370346	7.415122238259951	CCCATCCATCA
chr3	195965547	195965548	chr3:195965548:C:G	rs77887672	C	G	-	Hoxa9_MA0594.1	20	0	+	0	0	.
chr3	196022689	196022690	chr3:196022690:G:A	rs7618864	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr3	196081152	196081153	chr3:196081153:A:G	rs6763092	A	G	A	Hoxa9_MA0594.1	7	1	+	9.080937505299248	2.1780038315963273	CCCATCAATCC
chr3	196444060	196444061	chr3:196444061:G:A	rs7631203	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr3	196598528	196598529	chr3:196598529:A:G	rs4916436	A	G	A	Hoxa9_MA0594.1	4	1	-	9.929418333235837	3.0206635539206164	GCAATAAATCT
chr3	196598552	196598553	chr3:196598553:C:T	rs6583327	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr3	196670816	196670817	chr3:196670817:C:G	rs4916442	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr3	196962788	196962789	chr3:196962789:A:G	rs35852602	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr3	197331607	197331608	chr3:197331608:A:G	rs9325384	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr3	197400137	197400138	chr3:197400138:A:T	rs9816840	A	T	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr3	197425939	197425940	chr3:197425940:A:G	rs9870382	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr3	197601326	197601327	chr3:197601327:C:G	rs113478301	C	G	.	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr3	197601343	197601344	chr3:197601344:T:C	rs6583239	T	C	.	Hoxa9_MA0594.1	14	0	+	0	0	.
chr3	197802067	197802068	chr3:197802068:C:T	rs76715180	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr3	197802346	197802347	chr3:197802347:T:C	rs114238961	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr4	51905	51906	chr4:51906:A:G	rs6829344	A	G	a	Hoxa9_MA0594.1	2	1	+	11.39900822046537	5.996646203630733	GCAATAAATCA
chr4	244853	244854	chr4:244854:A:C	rs1386881054	A	C	.	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	457692	457693	chr4:457693:A:G	rs982599	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	604235	604236	chr4:604236:A:G	rs72611197	A	G	A	Hoxa9_MA0594.1	8	1	-	7.854530172183207	0.9812421220833174	GACATAAATCC
chr4	638288	638289	chr4:638289:G:A	rs35564967	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	660855	660856	chr4:660856:A:G	rs13119162	A	G	g	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	849395	849396	chr4:849396:G:A	rs6964	G	A	g	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	1288162	1288163	chr4:1288163:C:G	rs11247983	C	G	C	Hoxa9_MA0594.1	0	1	-	8.908361207066799	8.485324786288448	GGCATCAATCA
chr4	1309113	1309114	chr4:1309114:A:G	rs13134106	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	1512353	1512354	chr4:1512354:T:G	rs4254839	T	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	1531587	1531588	chr4:1531588:T:G	rs73065585	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	1565564	1565565	chr4:1565565:G:A	rs28527776	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	1568842	1568843	chr4:1568843:C:G	rs115117761	C	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	1592174	1592175	chr4:1592175:C:G	rs4074336	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	1698869	1698870	chr4:1698870:T:C	rs55646822	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	1784289	1784290	chr4:1784290:G:A	rs73795928	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	1784290	1784291	chr4:1784291:C:A	rs73795929	C	A	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	1792197	1792198	chr4:1792198:G:A	rs12502543	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	2163213	2163214	chr4:2163214:C:A	rs618262	C	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	2293018	2293019	chr4:2293019:T:C	rs7681318	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	2773670	2773671	chr4:2773671:G:A	rs190931377	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	3013889	3013890	chr4:3013890:A:G	rs11935128	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	3066841	3066842	chr4:3066842:C:T	rs144905889	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr4	3263982	3263983	chr4:3263983:C:T	rs3095077	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	3662030	3662031	chr4:3662031:C:T	rs13106594	C	T	c	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	3921703	3921704	chr4:3921704:T:C	rs62290921	T	C	-	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	3921709	3921710	chr4:3921710:T:C	rs144142286	T	C	-	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	4192438	4192439	chr4:4192439:A:G	rs2920168	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	4205591	4205592	chr4:4205592:G:T	rs1991918	G	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	4296324	4296325	chr4:4296325:A:G	rs12650949	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	4331599	4331600	chr4:4331600:C:G	rs6840104	C	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr4	4641158	4641159	chr4:4641159:A:C	rs17706166	A	C	A	Hoxa9_MA0594.1	6	1	+	10.763810917546127	7.526390168981065	ATCATAAATCA
chr4	4729408	4729409	chr4:4729409:G:A	rs6834412	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	4803726	4803727	chr4:4803727:G:A	rs13117653	G	A	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	4810531	4810532	chr4:4810532:G:A	rs551441220	G	A	G	Hoxa9_MA0594.1	2	1	-	8.848095527589834	6.9277644444626105	GACATAAATCT
chr4	5022843	5022844	chr4:5022844:G:T	rs62291579	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	5163347	5163348	chr4:5163348:A:T	rs1077366	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	5407122	5407123	chr4:5407123:G:C	rs195118	G	C	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	5655866	5655867	chr4:5655867:G:A	rs78737139	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	5732015	5732016	chr4:5732016:C:T	rs7671440	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr4	5938927	5938928	chr4:5938928:T:C	rs66759334	T	C	t	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	6493794	6493795	chr4:6493795:C:A	rs10937738	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	6493871	6493872	chr4:6493872:T:C	rs62286089	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	6528465	6528466	chr4:6528466:C:G	rs13130860	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	6942043	6942044	chr4:6942044:C:T	rs11736355	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	6942048	6942049	chr4:6942049:G:T	rs6831590	G	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	6942081	6942082	chr4:6942082:A:G	rs4689058	A	G	a	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	7043099	7043100	chr4:7043100:G:A	rs533573428	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	7076912	7076913	chr4:7076913:G:A	rs73202178	G	A	G	Hoxa9_MA0594.1	5	1	-	8.908361207066799	6.488222199737109	GGCATCAATCA
chr4	7147221	7147222	chr4:7147222:T:C	rs3901795	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	7158435	7158436	chr4:7158436:A:G	rs114456403	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	7272770	7272771	chr4:7272771:C:T	rs3913450	C	T	c	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	7629736	7629737	chr4:7629737:G:A	rs61574353	G	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	7642377	7642378	chr4:7642378:C:T	rs78369008	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	7642385	7642386	chr4:7642386:T:C	rs55703108	T	C	T	Hoxa9_MA0594.1	3	1	-	9.030647460072283	6.048851032663425	ACCATAAATTA
chr4	7655679	7655680	chr4:7655680:A:C	rs144096524	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	7961128	7961129	chr4:7961129:A:G	rs7356321	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	8010227	8010228	chr4:8010228:C:A	rs76025863	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr4	8010862	8010863	chr4:8010863:G:T	rs140163324	G	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	8207640	8207641	chr4:8207641:C:T	rs748964847	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	8261687	8261688	chr4:8261688:T:G	rs7698121	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	8278564	8278565	chr4:8278565:G:A	rs781293997	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	8278603	8278604	chr4:8278604:C:T	rs5018092	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	8579224	8579225	chr4:8579225:T:C	rs2270269	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	8603678	8603679	chr4:8603679:G:C	rs2241068	G	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	8609800	8609801	chr4:8609801:T:C	rs11736030	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	8640626	8640627	chr4:8640627:G:A	rs76222300	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	8667892	8667893	chr4:8667893:G:A	rs4645203	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	9099225	9099226	chr4:9099226:C:T	rs34938875	C	T	N	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	9154617	9154618	chr4:9154618:G:T	rs34798529	G	T	N	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	9529184	9529185	chr4:9529185:G:A	rs9761430	G	A	g	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	9611286	9611287	chr4:9611287:C:A	rs13131004	C	A	c	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	9690238	9690239	chr4:9690239:A:T	rs11731648	A	T	N	Hoxa9_MA0594.1	8	1	-	8.742804766854166	5.2730447137547145	CTCATAAATCC
chr4	9732392	9732393	chr4:9732393:G:C	rs527357615	G	C	g	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	9970988	9970989	chr4:9970989:C:T	rs28675082	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	9971015	9971016	chr4:9971016:T:G	rs10939636	T	G	T	Hoxa9_MA0594.1	8	1	+	8.219694000462	3.2647980705235318	CAAATCAATCA
chr4	9995909	9995910	chr4:9995910:C:T	rs3733586	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	10011548	10011549	chr4:10011549:T:G	rs6845554	T	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	10096699	10096700	chr4:10096700:G:A	rs893939701	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	10174763	10174764	chr4:10174764:C:G	rs146855072	C	G	c	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	10212535	10212536	chr4:10212536:A:G	rs728663	A	G	a	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	10244702	10244703	chr4:10244703:G:C	rs10010656	G	C	-	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	10297534	10297535	chr4:10297535:G:A	rs116147875	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	10587928	10587929	chr4:10587929:G:A	rs11934521	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	11226719	11226720	chr4:11226720:T:A	rs6845020	T	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	11229182	11229183	chr4:11229183:T:C	rs13107238	T	C	T	Hoxa9_MA0594.1	7	1	-	10.422554777021706	3.5196211033187854	CCAATCAATCA
chr4	11355301	11355302	chr4:11355302:C:T	rs4697877	C	T	c	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	11355340	11355341	chr4:11355341:C:T	rs62298088	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	11372671	11372672	chr4:11372672:T:A	rs62298091	T	A	t	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	11506535	11506536	chr4:11506536:G:T	rs10939329	G	T	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	11613396	11613397	chr4:11613397:G:C	rs10000318	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	11775487	11775488	chr4:11775488:C:T	rs73218155	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	12579009	12579010	chr4:12579010:A:G	rs16887280	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	12703258	12703259	chr4:12703259:C:G	rs34556472	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	12703263	12703264	chr4:12703264:G:A	rs34330035	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	12785066	12785067	chr4:12785067:T:C	rs12504146	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr4	12785073	12785074	chr4:12785074:C:G	rs12499410	C	G	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	12943163	12943164	chr4:12943164:T:C	rs10029793	T	C	C	Hoxa9_MA0594.1	10	1	-	7.0122332387752895	0.3754602530225206	GCCATCAAGCA
chr4	12950334	12950335	chr4:12950335:G:A	rs58403633	G	A	g	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr4	12971014	12971015	chr4:12971015:G:A	rs170373	G	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	12971025	12971026	chr4:12971026:T:C	rs223991	T	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	13031743	13031744	chr4:13031744:T:C	rs977032	T	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	13144421	13144422	chr4:13144422:C:A	rs531347	C	A	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	13641290	13641291	chr4:13641291:T:C	rs186261542	T	C	T	Hoxa9_MA0594.1	3	1	-	8.082954538162921	5.101158110754062	TCCATAAATCT
chr4	14035427	14035428	chr4:14035428:C:G	rs35006804	C	G	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	14596207	14596208	chr4:14596208:C:T	rs1501157	C	T	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	14695684	14695685	chr4:14695685:T:G	rs115541604	T	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	14968111	14968112	chr4:14968112:C:A	rs80074263	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	15132988	15132989	chr4:15132989:A:C	rs6449103	A	C	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	15296615	15296616	chr4:15296616:A:G	rs4393988	A	G	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	15296619	15296620	chr4:15296620:T:C	rs4443271	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	15355204	15355205	chr4:15355205:G:A	rs969607486	G	A	G	Hoxa9_MA0594.1	3	1	+	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr4	15375735	15375736	chr4:15375736:T:C	rs16891815	T	C	T	Hoxa9_MA0594.1	10	1	-	8.247667105749517	1.6108941199967477	ATCATGAATCA
chr4	15400336	15400337	chr4:15400337:G:A	rs7665294	G	A	A	Hoxa9_MA0594.1	0	1	+	11.628996430268678	10.763810917546127	GTCATAAATCA
chr4	15443908	15443909	chr4:15443909:C:T	rs2314590	C	T	C	Hoxa9_MA0594.1	3	1	-	8.224163582081468	11.205960009490326	CTCGTAAATCA
chr4	15542436	15542437	chr4:15542437:C:A	rs73237163	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	15914013	15914014	chr4:15914014:G:A	rs61351267	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	15957077	15957078	chr4:15957078:G:T	rs4698430	G	T	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	16024213	16024214	chr4:16024214:C:T	rs17478336	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	16024229	16024230	chr4:16024230:A:G	rs16892822	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	16030188	16030189	chr4:16030189:G:T	rs885289	G	T	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	16030193	16030194	chr4:16030194:C:T	rs146524567	C	T	C	Hoxa9_MA0594.1	2	1	+	8.673564251247663	6.753233168120441	ACCGTAAATCA
chr4	16083734	16083735	chr4:16083735:A:G	rs7692760	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	16095065	16095066	chr4:16095066:T:C	rs2099919	T	C	t	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	16112265	16112266	chr4:16112266:C:T	rs1712493	C	T	c	Hoxa9_MA0594.1	3	1	-	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr4	16196754	16196755	chr4:16196755:A:G	rs10939652	A	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	16388321	16388322	chr4:16388322:C:A	rs6851112	C	A	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	16693896	16693897	chr4:16693897:C:T	rs76678586	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	16862969	16862970	chr4:16862970:C:T	rs16894105	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	16862974	16862975	chr4:16862975:T:C	rs1055660510	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	16914721	16914722	chr4:16914722:G:T	rs35007550	G	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	16940356	16940357	chr4:16940357:A:G	rs12108202	A	G	A	Hoxa9_MA0594.1	3	1	+	8.13705986561569	5.155263438206831	GCTATAAATCC
chr4	17068901	17068902	chr4:17068902:T:A	rs28408225	T	A	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	17068902	17068903	chr4:17068903:A:G	rs28455966	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	17153167	17153168	chr4:17153168:C:G	rs580863	C	G	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr4	17766084	17766085	chr4:17766085:G:A	rs117958753	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	18881161	18881162	chr4:18881162:C:T	rs75849215	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	19260274	19260275	chr4:19260275:C:T	rs76464107	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr4	19260627	19260628	chr4:19260628:C:T	rs312353	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	19381223	19381224	chr4:19381224:T:C	rs6829605	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	19797073	19797074	chr4:19797074:A:G	rs78798194	A	G	A	Hoxa9_MA0594.1	8	1	-	7.6696269796303795	0.7963389295304895	ACCATGAATCT
chr4	19804107	19804108	chr4:19804108:A:G	rs4552457	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	20086844	20086845	chr4:20086845:A:G	rs10938787	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	20666664	20666665	chr4:20666665:G:A	rs78910656	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	20754383	20754384	chr4:20754384:G:A	rs2291530	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	20848137	20848138	chr4:20848138:A:G	rs11735642	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	20868177	20868178	chr4:20868178:C:T	rs1583425	C	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	21191647	21191648	chr4:21191648:T:C	rs73247389	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	21750147	21750148	chr4:21750148:C:T	rs6838195	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	21890564	21890565	chr4:21890565:G:C	rs1513566	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	22088377	22088378	chr4:22088378:C:T	rs2323310	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	23412859	23412860	chr4:23412860:A:G	rs13105782	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	23881094	23881095	chr4:23881095:C:T	rs2305682	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	23943774	23943775	chr4:23943775:T:G	rs6814337	T	G	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	24057982	24057983	chr4:24057983:G:A	rs17789830	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	24405562	24405563	chr4:24405563:G:T	rs544490467	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	24687321	24687322	chr4:24687322:A:G	rs181627911	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	24687326	24687327	chr4:24687327:C:A	rs74759055	C	A	C	Hoxa9_MA0594.1	2	1	+	9.581365958804113	8.45982798789041	CCCATGAATCA
chr4	24908812	24908813	chr4:24908813:T:G	rs35897466	T	G	T	Hoxa9_MA0594.1	6	1	-	9.376001310570523	6.138580562005461	GCAATCAATCT
chr4	24917070	24917071	chr4:24917071:G:A	rs115885278	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	25569421	25569422	chr4:25569422:G:A	rs16877251	G	A	A	Hoxa9_MA0594.1	2	1	-	8.497369115614307	6.577038032487084	GCCATCAAACA
chr4	25637113	25637114	chr4:25637114:T:G	rs10517077	T	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	25770836	25770837	chr4:25770837:G:C	rs7653919	G	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	25929305	25929306	chr4:25929306:A:G	rs14553	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	25956295	25956296	chr4:25956296:C:T	rs9291478	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	25974921	25974922	chr4:25974922:C:T	rs10006741	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	26060508	26060509	chr4:26060509:A:G	rs7661937	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	26064011	26064012	chr4:26064012:C:G	rs12512454	C	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	26193613	26193614	chr4:26193614:A:G	rs1000619952	A	G	A	Hoxa9_MA0594.1	5	1	+	9.642272946632424	7.126129134835814	ATAATAAATCA
chr4	26400564	26400565	chr4:26400565:A:G	rs11726853	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr4	26484126	26484127	chr4:26484127:T:C	rs73810951	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr4	26508830	26508831	chr4:26508831:A:G	rs6811280	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	26624337	26624338	chr4:26624338:C:T	rs114396570	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	26936513	26936514	chr4:26936514:C:T	rs7692953	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	27944520	27944521	chr4:27944521:T:C	rs9996523	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	28232559	28232560	chr4:28232560:T:C	rs10939200	T	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	28350687	28350688	chr4:28350688:A:C	rs982311473	A	C	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	28378589	28378590	chr4:28378590:T:C	rs1397439	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	28931970	28931971	chr4:28931971:T:G	rs12642441	T	G	T	Hoxa9_MA0594.1	8	1	+	8.484451549460127	3.5295556195216586	GTAATCAATCT
chr4	28987927	28987928	chr4:28987928:G:C	rs113966485	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	29310364	29310365	chr4:29310365:G:A	rs1975255	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	29734424	29734425	chr4:29734425:A:T	rs10013316	A	T	T	Hoxa9_MA0594.1	5	1	-	8.232403979495325	11.205960009490326	CTCATTAATCA
chr4	30462170	30462171	chr4:30462171:T:C	rs28667877	T	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	30612725	30612726	chr4:30612726:T:A	rs35192860	T	A	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	30612905	30612906	chr4:30612906:T:C	rs67205679	T	C	T	Hoxa9_MA0594.1	2	1	+	7.66103487567689	9.581365958804113	CCTATGAATCA
chr4	30770861	30770862	chr4:30770862:A:G	rs9999290	A	G	a	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	30957968	30957969	chr4:30957969:A:G	rs61795888	A	G	A	Hoxa9_MA0594.1	4	1	-	8.159236377169226	1.2504815978540056	GTCATAAAACA
chr4	31047608	31047609	chr4:31047609:T:C	rs6811512	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	31047641	31047642	chr4:31047642:T:C	rs61794078	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	31311791	31311792	chr4:31311792:A:G	rs4543074	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	31340461	31340462	chr4:31340462:C:A	rs1365635	C	A	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	31792027	31792028	chr4:31792028:G:T	rs6811255	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	32463226	32463227	chr4:32463227:G:A	chr4:32463227:G:A	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	32570153	32570154	chr4:32570154:A:G	rs17335936	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	32790604	32790605	chr4:32790605:A:T	rs61792787	A	T	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	32930317	32930318	chr4:32930318:T:G	rs7659735	T	G	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	33378993	33378994	chr4:33378994:A:C	rs180942566	A	C	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	33930854	33930855	chr4:33930855:T:C	rs13152635	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	34847341	34847342	chr4:34847342:T:A	rs10517333	T	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	34847362	34847363	chr4:34847363:G:A	rs151069714	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	35253793	35253794	chr4:35253794:G:A	rs4273488	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	35737071	35737072	chr4:35737072:G:A	rs7690983	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	35806350	35806351	chr4:35806351:A:G	rs4832782	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	35934342	35934343	chr4:35934343:T:C	rs16991735	T	C	C	Hoxa9_MA0594.1	8	1	+	9.60598952037383	2.73270147027394	GTCATCAATCT
chr4	36331016	36331017	chr4:36331017:T:C	rs190191447	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	36613562	36613563	chr4:36613563:G:C	rs11096819	G	C	G	Hoxa9_MA0594.1	0	1	-	8.614832151347091	9.037868572125442	CTAATAAATCT
chr4	36676849	36676850	chr4:36676850:G:C	chr4:36676850:G:C	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	36676854	36676855	chr4:36676855:T:C	chr4:36676855:T:C	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	36760876	36760877	chr4:36760877:C:G	rs35070397	C	G	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	37157687	37157688	chr4:37157688:T:C	rs114878167	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	37442128	37442129	chr4:37442129:C:A	rs79220681	C	A	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	37474382	37474383	chr4:37474383:A:T	rs78375878	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	37763303	37763304	chr4:37763304:C:T	rs17606048	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	37910016	37910017	chr4:37910017:A:G	rs2925952	A	G	G	Hoxa9_MA0594.1	10	1	-	8.484451549460127	7.4908861940535	GTAATCAATCT
chr4	37989411	37989412	chr4:37989412:C:T	rs114177626	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	38013954	38013955	chr4:38013955:T:C	rs78786098	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	38055916	38055917	chr4:38055917:A:T	rs62299978	A	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	38150504	38150505	chr4:38150505:G:A	rs75036856	G	A	G	Hoxa9_MA0594.1	6	1	-	7.864522907426146	8.260841894848062	ACCATCCATCA
chr4	38150970	38150971	chr4:38150971:G:C	rs186782743	G	C	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	38223405	38223406	chr4:38223406:T:C	rs10025453	T	C	T	Hoxa9_MA0594.1	4	1	+	10.084422038576625	3.175667259261404	CTAATAAATCA
chr4	38577070	38577071	chr4:38577071:G:C	rs6829317	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	38610180	38610181	chr4:38610181:G:A	rs337641	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	38675673	38675674	chr4:38675674:T:A	rs16994705	T	A	T	Hoxa9_MA0594.1	6	1	-	8.417211793056513	5.576110031913366	GCAGTAAATCA
chr4	38739265	38739266	chr4:38739266:T:C	rs6823941	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	38804570	38804571	chr4:38804571:T:C	rs5743561	T	C	T	Hoxa9_MA0594.1	10	1	-	7.700782005789437	1.0640090200366679	GTCCTAAATCA
chr4	38804578	38804579	chr4:38804579:G:T	rs5743560	G	T	G	Hoxa9_MA0594.1	2	1	-	7.700782005789437	6.5792440348757335	GTCCTAAATCA
chr4	38804585	38804586	chr4:38804586:A:C	rs4072548	A	C	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	38922653	38922654	chr4:38922654:C:T	rs12509328	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr4	39062505	39062506	chr4:39062506:G:C	rs2711942	G	C	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	39178796	39178797	chr4:39178797:T:G	rs1451821	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	39718027	39718028	chr4:39718028:A:G	rs146079364	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	39802556	39802557	chr4:39802557:C:G	rs12511274	C	G	c	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	39920421	39920422	chr4:39920422:A:C	rs28419175	A	C	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	40193916	40193917	chr4:40193917:G:T	rs4974972	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	40241736	40241737	chr4:40241737:T:G	rs111260702	T	G	G	Hoxa9_MA0594.1	4	1	+	8.774295001881132	1.8655402225659117	GCAATAAATTA
chr4	40241753	40241754	chr4:40241754:G:A	rs116525256	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	40303047	40303048	chr4:40303048:G:A	rs76565346	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	40323685	40323686	chr4:40323686:G:A	rs142642925	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	40583937	40583938	chr4:40583938:T:A	rs9997526	T	A	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	40723208	40723209	chr4:40723209:C:G	rs146290126	C	G	c	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	40841439	40841440	chr4:40841440:C:T	rs7695423	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	40841448	40841449	chr4:40841449:G:A	rs1865606	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	40849031	40849032	chr4:40849032:T:C	rs4861068	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	40872620	40872621	chr4:40872621:T:C	rs61705773	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	41013132	41013133	chr4:41013133:C:A	rs7657512	C	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	41064902	41064903	chr4:41064903:G:A	rs28431187	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	41072203	41072204	chr4:41072204:C:T	rs113190801	C	T	C	Hoxa9_MA0594.1	0	1	-	7.8728260628999855	7.007640550177435	GCCATCAATTT
chr4	41287246	41287247	chr4:41287247:G:T	rs76771265	G	T	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	41320348	41320349	chr4:41320349:A:G	rs73232175	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	41320380	41320381	chr4:41320381:G:A	rs6838610	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	42399042	42399043	chr4:42399043:G:C	rs3103221	G	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr4	42806680	42806681	chr4:42806681:C:T	rs12643779	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	42845674	42845675	chr4:42845675:C:T	rs10938222	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr4	42845675	42845676	chr4:42845676:A:G	rs77358243	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	42974234	42974235	chr4:42974235:G:T	rs13138434	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	43203548	43203549	chr4:43203549:T:A	rs4254814	T	A	T	Hoxa9_MA0594.1	8	1	+	8.07066746510666	4.600907412007207	ACAATAAATCC
chr4	43235220	43235221	chr4:43235221:G:A	rs12152559	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	43331943	43331944	chr4:43331944:C:T	chr4:43331944:C:T	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	44272696	44272697	chr4:44272697:A:G	rs62304820	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	44654313	44654314	chr4:44654314:A:G	rs9992587	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	44662456	44662457	chr4:44662457:C:G	rs72624165	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	44845567	44845568	chr4:44845568:T:A	rs78108172	T	A	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	44905877	44905878	chr4:44905878:T:C	rs59879302	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	45028969	45028970	chr4:45028970:C:G	rs11941061	C	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	45055409	45055410	chr4:45055410:C:A	rs62411640	C	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	45079824	45079825	chr4:45079825:C:A	rs4432781	C	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	45101128	45101129	chr4:45101129:G:T	rs74417022	G	T	G	Hoxa9_MA0594.1	9	1	-	9.929418333235837	6.861588500339746	GCAATAAATCT
chr4	45122617	45122618	chr4:45122618:G:A	rs62409627	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	45578962	45578963	chr4:45578963:A:G	rs1386205	A	G	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	45638745	45638746	chr4:45638746:C:T	rs4695121	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	45688415	45688416	chr4:45688416:G:A	rs1563480	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	45835944	45835945	chr4:45835945:G:C	rs12650609	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	46069251	46069252	chr4:46069252:C:T	rs2350438	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	46227656	46227657	chr4:46227657:C:T	rs520476	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	46227669	46227670	chr4:46227670:T:C	rs520501	T	C	C	Hoxa9_MA0594.1	7	1	-	9.95404143668966	3.051107762986741	GTAATCAATCA
chr4	46236760	46236761	chr4:46236761:A:G	rs561779	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	46286203	46286204	chr4:46286204:T:A	rs575048	T	A	A	Hoxa9_MA0594.1	6	1	-	9.00428321168444	6.163181450541293	GTCATAAATTA
chr4	46707816	46707817	chr4:46707817:C:T	rs115714028	C	T	c	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr4	47223910	47223911	chr4:47223911:C:T	rs1470208	C	T	T	Hoxa9_MA0594.1	2	1	+	9.736370122260793	7.816039039133571	CTCATAAATCT
chr4	47365529	47365530	chr4:47365530:T:A	rs35451348	T	A	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	47427388	47427389	chr4:47427389:A:C	rs76065978	A	C	A	Hoxa9_MA0594.1	6	1	+	8.232403979495325	4.994983230930263	CTCATTAATCA
chr4	47490095	47490096	chr4:47490096:T:G	rs10938488	T	G	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	47510858	47510859	chr4:47510859:A:G	rs4337705	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr4	47855599	47855600	chr4:47855600:T:C	rs10030927	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	48043235	48043236	chr4:48043236:C:T	rs144326125	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	48259155	48259156	chr4:48259156:T:C	rs1472973	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	48333839	48333840	chr4:48333840:A:G	rs16861203	A	G	a	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	48652182	48652183	chr4:48652183:G:A	rs149748620	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	48779153	48779154	chr4:48779154:A:C	rs1022391143	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	49492372	49492373	chr4:49492373:G:T	rs4117257	G	T	.	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr4	49510918	49510919	chr4:49510919:C:T	rs4066464	C	T	.	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	49554873	49554874	chr4:49554874:G:A	rs76559137	G	A	.	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	52235962	52235963	chr4:52235963:C:A	chr4:52235963:C:A	C	A	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	53161850	53161851	chr4:53161851:G:C	chr4:53161851:G:C	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	53476683	53476684	chr4:53476684:G:A	chr4:53476684:G:A	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	53591693	53591694	chr4:53591694:A:G	rs7691817	A	G	G	Hoxa9_MA0594.1	5	1	+	8.773111023127315	6.256967211330704	CAAATAAATCA
chr4	53616964	53616965	chr4:53616965:C:T	rs2668554	C	T	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	53684006	53684007	chr4:53684007:T:C	rs62323682	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr4	53935381	53935382	chr4:53935382:A:G	rs17083718	A	G	a	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	53988209	53988210	chr4:53988210:C:A	rs13134590	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	54186120	54186121	chr4:54186121:G:A	rs7664768	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	54483227	54483228	chr4:54483228:A:G	rs1507956	A	G	a	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	54660753	54660754	chr4:54660754:G:T	rs3819389	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	54781695	54781696	chr4:54781696:A:G	rs138655328	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	55372679	55372680	chr4:55372680:G:A	rs819271	G	A	A	Hoxa9_MA0594.1	1	1	-	7.6696269796303795	6.778077218519983	ACCATGAATCT
chr4	55399399	55399400	chr4:55399400:T:G	rs57160206	T	G	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr4	55475129	55475130	chr4:55475130:C:G	rs11133387	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	55544620	55544621	chr4:55544621:T:C	rs7667741	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	56690464	56690465	chr4:56690465:T:C	rs720429	T	C	t	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	56690501	56690502	chr4:56690502:T:C	rs720430	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	56739510	56739511	chr4:56739511:A:G	rs73240590	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	56914435	56914436	chr4:56914436:T:G	rs6838948	T	G	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	57053536	57053537	chr4:57053537:G:A	rs13109999	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	57053538	57053539	chr4:57053539:T:C	rs13143577	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	57080944	57080945	chr4:57080945:A:G	rs10019698	A	G	A	Hoxa9_MA0594.1	7	1	+	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr4	57191351	57191352	chr4:57191352:C:A	rs73242671	C	A	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	57217761	57217762	chr4:57217762:G:A	rs1011390302	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	57373967	57373968	chr4:57373968:A:G	rs58909918	A	G	G	Hoxa9_MA0594.1	8	1	-	8.169295346121482	1.296007296021593	CCCCTAAATCA
chr4	57433596	57433597	chr4:57433597:T:C	rs7668422	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	57502379	57502380	chr4:57502380:A:T	rs34654155	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	57705357	57705358	chr4:57705358:A:T	rs35072593	A	T	A	Hoxa9_MA0594.1	8	1	-	9.285628926363104	5.815868873263652	CTTATAAATCA
chr4	57705378	57705379	chr4:57705379:A:G	rs34606769	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	57835963	57835964	chr4:57835964:A:G	rs13134527	A	G	A	Hoxa9_MA0594.1	3	1	+	7.301113149517894	4.319316722109034	GACATCAATCC
chr4	58646304	58646305	chr4:58646305:A:T	rs17089520	A	T	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr4	59045063	59045064	chr4:59045064:T:C	rs1353402	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr4	59174921	59174922	chr4:59174922:T:A	rs11732027	T	A	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	59635426	59635427	chr4:59635427:A:G	rs73202979	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	59805014	59805015	chr4:59805015:A:G	rs62307713	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	60014233	60014234	chr4:60014234:T:C	rs12645408	T	C	T	Hoxa9_MA0594.1	10	1	+	9.182953099595478	8.189387744188851	CTCATCAATCT
chr4	60242061	60242062	chr4:60242062:C:T	rs28469458	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	60532137	60532138	chr4:60532138:T:C	rs17291517	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	60676569	60676570	chr4:60676570:T:C	rs7687344	T	C	T	Hoxa9_MA0594.1	10	1	+	8.614832151347091	7.621266795940464	CTAATAAATCT
chr4	61203216	61203217	chr4:61203217:C:T	rs557529249	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	61278187	61278188	chr4:61278188:T:G	rs191717322	T	G	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	61309790	61309791	chr4:61309791:A:G	rs575267329	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	61820294	61820295	chr4:61820295:T:C	rs6829758	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	61866840	61866841	chr4:61866841:A:G	rs35610391	A	G	G	Hoxa9_MA0594.1	6	1	+	9.341231971375704	2.5236311856200464	CACATCAATCA
chr4	62209461	62209462	chr4:62209462:T:G	rs11737405	T	G	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	62561521	62561522	chr4:62561522:A:C	rs1455229	A	C	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	62592309	62592310	chr4:62592310:G:T	rs13124757	G	T	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	63211972	63211973	chr4:63211973:A:G	rs55875028	A	G	A	Hoxa9_MA0594.1	7	1	+	9.181612572863987	2.2786788991610663	ACTATCAATCA
chr4	63795571	63795572	chr4:63795572:C:T	rs2347823	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	64203966	64203967	chr4:64203967:C:A	rs4860578	C	A	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	64673349	64673350	chr4:64673350:C:T	rs12647346	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr4	64673377	64673378	chr4:64673378:A:G	rs11736175	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	65046819	65046820	chr4:65046820:G:A	rs143609450	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	65356593	65356594	chr4:65356594:G:A	rs12651698	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	65508316	65508317	chr4:65508317:A:G	rs58710076	A	G	A	Hoxa9_MA0594.1	7	1	+	8.08407129645524	1.181137622752321	GCTATGAATCA
chr4	65510987	65510988	chr4:65510988:T:C	rs62299213	T	C	-	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	65522688	65522689	chr4:65522689:G:A	rs7676872	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	66039199	66039200	chr4:66039200:C:T	rs6819941	C	T	t	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	66276972	66276973	chr4:66276973:G:T	rs67857601	G	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr4	67235662	67235663	chr4:67235663:T:C	rs62315524	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	67895979	67895980	chr4:67895980:G:A	rs6552127	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	67996340	67996341	chr4:67996341:G:C	rs1438408	G	C	g	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	68042590	68042591	chr4:68042591:T:G	rs893482	T	G	g	Hoxa9_MA0594.1	24	0	-	0	0	.
chr4	68119958	68119959	chr4:68119959:A:G	rs13135438	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	68405021	68405022	chr4:68405022:C:T	rs62317489	C	T	c	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	68522575	68522576	chr4:68522576:A:G	rs181004755	A	G	a	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	68866132	68866133	chr4:68866133:G:T	rs111418407	G	T	t	Hoxa9_MA0594.1	0	1	+	9.00428321168444	6.03628144569782	GTCATAAATTA
chr4	68997455	68997456	chr4:68997456:G:A	rs2017990	G	A	t	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	69045142	69045143	chr4:69045143:C:T	rs72851318	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	69045173	69045174	chr4:69045174:A:G	rs4418041	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	69097441	69097442	chr4:69097442:A:C	rs12647681	A	C	.	Hoxa9_MA0594.1	6	1	+	6.982587615172259	3.7451668666071978	GCCATCACTCA
chr4	69097449	69097450	chr4:69097450:A:G	rs12647682	A	G	.	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	69180004	69180005	chr4:69180005:T:G	rs9999103	T	G	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr4	69268751	69268752	chr4:69268752:T:C	rs748340432	T	C	.	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	69419026	69419027	chr4:69419027:T:C	rs2642839	T	C	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	69454859	69454860	chr4:69454860:T:C	rs17146922	T	C	t	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	69454886	69454887	chr4:69454887:C:T	rs2736475	C	T	t	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	69531483	69531484	chr4:69531484:G:C	rs62307052	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	69531517	69531518	chr4:69531518:T:C	rs72646793	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	69531518	69531519	chr4:69531519:G:A	rs79863138	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	69689670	69689671	chr4:69689671:T:C	rs192563562	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	69924772	69924773	chr4:69924773:C:T	rs571784052	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	70241646	70241647	chr4:70241647:T:A	rs17148376	T	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	70759330	70759331	chr4:70759331:G:T	rs61440043	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	70779145	70779146	chr4:70779146:A:G	rs114226289	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	70858619	70858620	chr4:70858620:C:T	rs147152654	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr4	71254891	71254892	chr4:71254892:G:C	rs10938138	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	71521147	71521148	chr4:71521148:A:G	rs4694399	A	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	73897253	73897254	chr4:73897254:T:C	rs482239	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	74055740	74055741	chr4:74055741:A:G	rs1435517	A	G	a	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	74062600	74062601	chr4:74062601:C:T	rs16850405	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	74320686	74320687	chr4:74320687:A:C	rs7694828	A	C	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	74389548	74389549	chr4:74389549:T:G	rs13142534	T	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	74389549	74389550	chr4:74389550:A:C	rs13137238	A	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	74428366	74428367	chr4:74428367:A:G	rs921605348	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	74529046	74529047	chr4:74529047:A:G	rs9790716	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	74752026	74752027	chr4:74752027:T:C	rs7686573	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	74756006	74756007	chr4:74756007:A:G	rs11734944	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	74756830	74756831	chr4:74756831:T:C	rs77547747	T	C	T	Hoxa9_MA0594.1	10	1	-	8.220877979215818	1.5841049934630487	GCAATCAATTA
chr4	74756852	74756853	chr4:74756853:C:A	rs12710868	C	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	74874802	74874803	chr4:74874803:A:C	rs1192202430	A	C	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	75048619	75048620	chr4:75048620:C:T	rs1043633	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	75343486	75343487	chr4:75343487:A:G	rs17000469	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	75710419	75710420	chr4:75710420:C:T	rs544484934	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	75889786	75889787	chr4:75889787:T:C	rs2047984	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	76420491	76420492	chr4:76420492:A:T	rs141974598	A	T	a	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	76420492	76420493	chr4:76420493:T:C	rs147328641	T	C	t	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	76488641	76488642	chr4:76488642:G:A	rs7654754	G	A	G	Hoxa9_MA0594.1	2	1	-	10.004402379582464	8.08407129645524	GCCATGAATCA
chr4	76546819	76546820	chr4:76546820:A:C	rs7666967	A	C	C	Hoxa9_MA0594.1	10	1	+	7.615878323456167	5.152723080820007	CCCCTCAATCA
chr4	76559423	76559424	chr4:76559424:T:C	rs60623800	T	C	T	Hoxa9_MA0594.1	3	1	-	8.431006454478752	5.449210027069893	TCAATAAATCA
chr4	76608496	76608497	chr4:76608497:G:A	rs72868159	G	A	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	76737936	76737937	chr4:76737937:T:C	rs344139	T	C	T	Hoxa9_MA0594.1	0	1	-	9.181612572863987	10.046798085586536	ACTATCAATCA
chr4	76995711	76995712	chr4:76995712:G:A	rs6532758	G	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	77052708	77052709	chr4:77052709:T:C	rs150835228	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	77122376	77122377	chr4:77122377:A:G	rs60418757	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	78080222	78080223	chr4:78080223:C:G	rs72858775	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	78310545	78310546	chr4:78310546:A:T	rs944638923	A	T	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	78374410	78374411	chr4:78374411:G:A	rs116432230	G	A	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	79083193	79083194	chr4:79083194:G:A	rs7438158	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	79083208	79083209	chr4:79083209:A:G	rs1299511313	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	79552321	79552322	chr4:79552322:T:C	rs2165388	T	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	79854644	79854645	chr4:79854645:A:G	rs147127509	A	G	A	Hoxa9_MA0594.1	4	1	-	8.425452190470368	1.5166974111551483	GCAATTAATCA
chr4	79865231	79865232	chr4:79865232:G:C	rs566505577	G	C	G	Hoxa9_MA0594.1	1	1	-	11.544092747935409	8.485324786288448	CCCATCAATCA
chr4	79920737	79920738	chr4:79920738:C:T	rs7684497	C	T	T	Hoxa9_MA0594.1	1	1	+	8.707588800243967	7.816039039133571	CCTATAAATCT
chr4	80059914	80059915	chr4:80059915:A:C	rs62300369	A	C	A	Hoxa9_MA0594.1	10	1	+	8.159236377169226	5.696081134533065	GTCATAAAACA
chr4	80231248	80231249	chr4:80231249:C:T	rs77368263	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	80265651	80265652	chr4:80265652:A:C	rs568680764	A	C	A	Hoxa9_MA0594.1	6	1	+	8.655440400273676	5.418019651708613	GTCATTAATCA
chr4	80428971	80428972	chr4:80428972:A:G	rs79950287	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	81143079	81143080	chr4:81143080:C:T	rs28377778	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	81291015	81291016	chr4:81291016:A:C	rs10488936	A	C	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	81755452	81755453	chr4:81755453:A:T	rs1497781	A	T	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	81841587	81841588	chr4:81841588:A:G	rs1993798	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	82428807	82428808	chr4:82428808:A:G	rs147809606	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	82630191	82630192	chr4:82630192:C:G	rs3733230	C	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	83044032	83044033	chr4:83044033:A:T	rs1268630987	A	T	A	Hoxa9_MA0594.1	5	1	+	10.159406543039145	7.185850513044142	GTCATAAATCT
chr4	83075875	83075876	chr4:83075876:T:G	rs11944557	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	83387573	83387574	chr4:83387574:G:A	rs17006766	G	A	G	Hoxa9_MA0594.1	10	1	-	9.19220543602036	10.185770791426988	ACCATAAATCC
chr4	83466280	83466281	chr4:83466281:C:T	rs13115704	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	83617655	83617656	chr4:83617656:T:G	rs17359636	T	G	T	Hoxa9_MA0594.1	10	1	-	10.1771786874735	7.7140234448373395	CCTATAAATCA
chr4	83890858	83890859	chr4:83890859:A:T	rs75510982	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	84443772	84443773	chr4:84443773:G:A	rs730796	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	84585907	84585908	chr4:84585908:G:T	rs539787397	G	T	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	84852249	84852250	chr4:84852250:C:T	rs116069128	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	84917941	84917942	chr4:84917942:T:C	rs6833661	T	C	C	Hoxa9_MA0594.1	3	1	-	8.702990986792262	5.721194559383403	CCCATCTATCA
chr4	84937175	84937176	chr4:84937176:T:C	rs6848127	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	85181371	85181372	chr4:85181372:G:A	rs6829769	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	85391855	85391856	chr4:85391856:A:G	rs147975787	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	85437467	85437468	chr4:85437468:T:G	rs1481775	T	G	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	85495841	85495842	chr4:85495842:C:T	rs72654054	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	85495859	85495860	chr4:85495860:A:T	rs13126084	A	T	A	Hoxa9_MA0594.1	1	1	-	9.00428321168444	7.692972196235129	GTCATAAATTA
chr4	85707893	85707894	chr4:85707894:G:A	rs73835536	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	85728731	85728732	chr4:85728732:T:C	rs6853196	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	85788745	85788746	chr4:85788746:T:G	rs7662174	T	G	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	85863014	85863015	chr4:85863015:G:T	rs345353	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	86033713	86033714	chr4:86033714:T:C	rs3775173	T	C	T	Hoxa9_MA0594.1	3	1	-	9.7350295955293	6.753233168120441	ACTATAAATCA
chr4	86704874	86704875	chr4:86704875:A:G	rs1212166	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	86847363	86847364	chr4:86847364:T:G	rs13149938	T	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	86856091	86856092	chr4:86856092:T:C	rs10020861	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	87024248	87024249	chr4:87024249:G:T	rs34140562	G	T	G	Hoxa9_MA0594.1	1	1	-	7.994175372278161	5.791314595718456	CCAGTAAATCA
chr4	87025841	87025842	chr4:87025842:C:A	rs72667757	C	A	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	87220944	87220945	chr4:87220945:T:C	rs73839118	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	87423498	87423499	chr4:87423499:A:T	rs7680878	A	T	A	Hoxa9_MA0594.1	4	1	-	9.19220543602036	2.283450656705141	ACCATAAATCC
chr4	87523562	87523563	chr4:87523563:T:A	rs7657268	T	A	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	87525513	87525514	chr4:87525514:T:A	rs28521138	T	A	T	Hoxa9_MA0594.1	7	1	-	8.93585297782921	2.03291930412629	GCAATAAATCC
chr4	87525520	87525521	chr4:87525521:C:T	rs59233926	C	T	C	Hoxa9_MA0594.1	0	1	-	8.93585297782921	8.07066746510666	GCAATAAATCC
chr4	87527327	87527328	chr4:87527328:T:G	rs10516793	T	G	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	87749424	87749425	chr4:87749425:C:T	rs2732195	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	87785978	87785979	chr4:87785979:G:C	rs2616268	G	C	G	Hoxa9_MA0594.1	9	1	-	8.848095527589834	2.0497645658889865	GACATAAATCT
chr4	87805806	87805807	chr4:87805807:A:G	rs17013175	A	G	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	87883128	87883129	chr4:87883129:G:A	rs10222997	G	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	87883162	87883163	chr4:87883163:A:G	rs10222816	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	88109767	88109768	chr4:88109768:C:G	rs2622621	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	88157771	88157772	chr4:88157772:T:C	rs2622604	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	88230675	88230676	chr4:88230676:T:A	rs41478845	T	A	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	88361534	88361535	chr4:88361535:C:T	rs9790829	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	88624349	88624350	chr4:88624350:A:G	rs72882950	A	G	A	Hoxa9_MA0594.1	4	1	-	8.581246790906087	1.672492011590868	CTCATAAATTA
chr4	88822430	88822431	chr4:88822431:A:T	rs3775375	A	T	a	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	88970046	88970047	chr4:88970047:T:C	rs2178584	T	C	T	Hoxa9_MA0594.1	4	1	+	8.159236377169226	1.2504815978540056	GTCATAAAACA
chr4	88970920	88970921	chr4:88970921:G:A	rs1903007	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	88982972	88982973	chr4:88982973:T:C	rs1921681	T	C	T	Hoxa9_MA0594.1	3	1	-	8.99912740272714	6.0173309753182815	TCCATCAATCA
chr4	89104955	89104956	chr4:89104956:A:G	rs6532112	A	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	89156370	89156371	chr4:89156371:G:A	rs57987710	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	89303460	89303461	chr4:89303461:T:C	chr4:89303461:T:C	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr4	89363180	89363181	chr4:89363181:T:C	rs36085188	T	C	t	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	89489390	89489391	chr4:89489391:A:T	rs28432001	A	T	A	Hoxa9_MA0594.1	1	1	-	11.205960009490326	9.894648994041017	CTCATAAATCA
chr4	89489399	89489400	chr4:89489400:G:A	rs12648284	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	89586612	89586613	chr4:89586613:G:A	rs1495550	G	A	G	Hoxa9_MA0594.1	9	1	-	7.260118532919163	4.635405314334925	GCCATCCATCT
chr4	89753877	89753878	chr4:89753878:T:C	rs77795436	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	90127790	90127791	chr4:90127791:G:T	rs187161303	G	T	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	90127792	90127793	chr4:90127793:G:C	rs190422682	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	90862406	90862407	chr4:90862407:C:T	rs888680176	C	T	C	Hoxa9_MA0594.1	0	1	+	8.773111023127315	6.228145677919046	CAAATAAATCA
chr4	90862417	90862418	chr4:90862418:T:C	rs28526093	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	90958131	90958132	chr4:90958132:T:C	rs35825817	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	91269107	91269108	chr4:91269108:T:C	chr4:91269108:T:C	T	C	T	Hoxa9_MA0594.1	10	1	-	8.232403979495325	1.5956309937425557	CTCATTAATCA
chr4	91330940	91330941	chr4:91330941:T:C	rs6833290	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	91340524	91340525	chr4:91340525:G:T	rs4593093	G	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	92477607	92477608	chr4:92477608:C:T	rs12643954	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	92988575	92988576	chr4:92988576:T:A	rs12498874	T	A	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	93217737	93217738	chr4:93217738:A:G	chr4:93217738:A:G	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	94334789	94334790	chr4:94334790:C:G	rs79911406	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	94413549	94413550	chr4:94413550:C:T	rs78502300	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	94671225	94671226	chr4:94671226:G:A	rs1472962	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	95109250	95109251	chr4:95109251:G:T	rs3796432	G	T	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	95214401	95214402	chr4:95214402:C:T	rs2571038	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr4	95499535	95499536	chr4:95499536:T:C	rs113173767	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	95505483	95505484	chr4:95505484:A:G	rs182886729	A	G	A	Hoxa9_MA0594.1	5	1	+	8.209854543006394	5.693710731209784	GCCATATATCT
chr4	95541292	95541293	chr4:95541293:C:T	rs13149656	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	95661403	95661404	chr4:95661404:G:C	rs34278336	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	95683327	95683328	chr4:95683328:C:T	rs13142665	C	T	T	Hoxa9_MA0594.1	2	1	+	8.247667105749517	6.327336022622293	ATCATGAATCA
chr4	95731922	95731923	chr4:95731923:C:T	rs2903012	C	T	C	Hoxa9_MA0594.1	3	1	-	8.417211793056513	11.39900822046537	GCAGTAAATCA
chr4	95731927	95731928	chr4:95731928:T:C	rs12643863	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	95836761	95836762	chr4:95836762:C:T	rs6842569	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	96784714	96784715	chr4:96784715:G:A	rs11097522	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	96784724	96784725	chr4:96784725:T:A	rs11097523	T	A	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	97082428	97082429	chr4:97082429:C:T	rs35081540	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	97115572	97115573	chr4:97115573:C:T	rs6837640	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	97197231	97197232	chr4:97197232:T:C	rs6858100	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	98480810	98480811	chr4:98480811:G:A	rs78344931	G	A	g	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	98565064	98565065	chr4:98565065:T:C	rs79669446	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	98565081	98565082	chr4:98565082:C:T	rs76611025	C	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	98716942	98716943	chr4:98716943:A:C	rs56082418	A	C	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	98785416	98785417	chr4:98785417:G:T	rs62323688	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	99300909	99300910	chr4:99300910:C:T	rs13117371	C	T	N	Hoxa9_MA0594.1	9	1	+	9.503973926077597	6.8792607074933585	GCCATCAATCC
chr4	99653107	99653108	chr4:99653108:C:T	chr4:99653108:C:T	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	99664857	99664858	chr4:99664858:G:A	rs7678889	G	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	99671217	99671218	chr4:99671218:C:T	rs11728769	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	99817065	99817066	chr4:99817066:G:T	rs72911129	G	T	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	100287744	100287745	chr4:100287745:G:A	rs80229744	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	100348669	100348670	chr4:100348670:A:G	rs7674351	A	G	A	Hoxa9_MA0594.1	3	1	+	7.801541603022757	4.819745175613899	GACATGAATCA
chr4	100386516	100386517	chr4:100386517:A:G	rs10516462	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	100421506	100421507	chr4:100421507:G:A	rs59679939	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	100421540	100421541	chr4:100421541:G:A	rs145005205	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	101222632	101222633	chr4:101222633:T:G	chr4:101222633:T:G	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr4	101288202	101288203	chr4:101288203:T:G	rs1441433	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	101346295	101346296	chr4:101346296:G:A	rs2583391	G	A	a	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	101355524	101355525	chr4:101355525:T:C	rs6845263	T	C	T	Hoxa9_MA0594.1	7	1	-	8.773111023127315	1.8701773494243947	CAAATAAATCA
chr4	101678345	101678346	chr4:101678346:G:A	rs7689967	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr4	101708498	101708499	chr4:101708499:C:A	rs77557018	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	101733738	101733739	chr4:101733739:G:A	rs7659763	G	A	G	Hoxa9_MA0594.1	9	1	-	9.452499902096816	6.827786683512578	AACATAAATCA
chr4	101874542	101874543	chr4:101874543:G:A	rs1230788780	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	102211886	102211887	chr4:102211887:C:T	rs7667281	C	T	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	102771185	102771186	chr4:102771186:T:C	rs150896	T	C	t	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr4	103294928	103294929	chr4:103294929:C:T	rs6820979	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	105050270	105050271	chr4:105050271:C:G	rs2866763	C	G	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	105061456	105061457	chr4:105061457:G:A	rs141637648	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	105101999	105102000	chr4:105102000:G:T	rs72953283	G	T	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	105387560	105387561	chr4:105387561:A:G	rs2726506	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	105399974	105399975	chr4:105399975:G:T	rs73838086	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	105957581	105957582	chr4:105957582:A:G	rs80089854	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	106080609	106080610	chr4:106080610:G:A	chr4:106080610:G:A	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	106256038	106256039	chr4:106256039:A:T	rs56333662	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	106352434	106352435	chr4:106352435:G:A	rs59228887	G	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	106598349	106598350	chr4:106598350:T:C	rs1346032	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	106598364	106598365	chr4:106598365:G:A	rs1346033	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	106800418	106800419	chr4:106800419:G:A	rs17036980	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	107443165	107443166	chr4:107443166:A:G	rs17037677	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	107477576	107477577	chr4:107477577:C:T	rs9992869	C	T	-	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	107654798	107654799	chr4:107654799:G:A	rs35176475	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	107758105	107758106	chr4:107758106:T:C	rs116447940	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	107991120	107991121	chr4:107991121:A:G	rs149026135	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	108104824	108104825	chr4:108104825:G:T	rs7671583	G	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	108141528	108141529	chr4:108141529:A:C	rs144559975	A	C	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	108342751	108342752	chr4:108342752:A:G	rs4956177	A	G	A	Hoxa9_MA0594.1	4	1	-	9.283125442814011	2.374370663498791	GCCATACATCA
chr4	108342755	108342756	chr4:108342756:C:T	rs12108384	C	T	C	Hoxa9_MA0594.1	0	1	-	9.283125442814011	8.41793993009146	GCCATACATCA
chr4	108446748	108446749	chr4:108446749:G:C	rs147609497	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	108621105	108621106	chr4:108621106:C:T	chr4:108621106:C:T	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	108644578	108644579	chr4:108644579:C:T	rs2575603	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr4	109079335	109079336	chr4:109079336:G:C	rs1991218	G	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	109112968	109112969	chr4:109112969:C:G	rs3108939	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	109128485	109128486	chr4:109128486:A:G	rs72617755	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	109558391	109558392	chr4:109558392:C:G	rs13147439	C	G	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	110084407	110084408	chr4:110084408:G:C	rs145137822	G	C	-	Hoxa9_MA0594.1	2	1	-	8.787894669125532	2.2639946813771914	GTCATATATCA
chr4	110084413	110084414	chr4:110084414:C:T	rs114139712	C	T	-	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	110140306	110140307	chr4:110140307:T:C	rs112475006	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	110633552	110633553	chr4:110633553:G:C	rs2739206	G	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	110998549	110998550	chr4:110998550:T:C	rs72895110	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	111355586	111355587	chr4:111355587:T:G	rs549699589	T	G	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr4	112332544	112332545	chr4:112332545:T:G	rs6820941	T	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	112818553	112818554	chr4:112818554:G:C	rs10026837	G	C	C	Hoxa9_MA0594.1	0	1	-	8.773111023127315	9.196147443905666	CAAATAAATCA
chr4	113325899	113325900	chr4:113325900:A:G	rs56098215	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	113395138	113395139	chr4:113395139:G:A	rs10516596	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	113467663	113467664	chr4:113467664:A:G	rs2285703	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	113712207	113712208	chr4:113712208:A:G	rs2040744	A	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	114018284	114018285	chr4:114018285:G:A	rs11098221	G	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	114225664	114225665	chr4:114225665:C:T	rs2173248	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	114250643	114250644	chr4:114250644:T:A	rs12644219	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	114869923	114869924	chr4:114869924:C:T	rs9991654	C	T	c	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	115112967	115112968	chr4:115112968:G:C	rs17047653	G	C	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	115114088	115114089	chr4:115114089:G:T	rs191679209	G	T	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	115249954	115249955	chr4:115249955:C:T	rs71606744	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	115757767	115757768	chr4:115757768:G:T	rs17488786	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	116632523	116632524	chr4:116632524:T:C	rs116245927	T	C	T	Hoxa9_MA0594.1	1	1	+	10.507458459354975	11.39900822046537	GTAATAAATCA
chr4	116796063	116796064	chr4:116796064:T:C	rs12501114	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	116942380	116942381	chr4:116942381:C:T	rs4834599	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	117383622	117383623	chr4:117383623:G:A	rs191277255	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	117516150	117516151	chr4:117516151:C:A	rs1352575	C	A	A	Hoxa9_MA0594.1	1	1	+	8.4262430855653	6.223382309005595	GCCATAAATTT
chr4	117578184	117578185	chr4:117578185:T:C	rs2635250	T	C	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr4	117597194	117597195	chr4:117597195:C:G	rs10857054	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	117599015	117599016	chr4:117599016:A:G	rs6534043	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	117691995	117691996	chr4:117691996:T:C	rs72685050	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	117777695	117777696	chr4:117777696:G:C	rs6534056	G	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr4	117845034	117845035	chr4:117845035:T:C	rs4580717	T	C	T	Hoxa9_MA0594.1	0	1	-	9.7350295955293	10.60021510825185	ACTATAAATCA
chr4	118125207	118125208	chr4:118125208:A:C	rs10015232	A	C	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	118328106	118328107	chr4:118328107:A:G	rs788654	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	118400848	118400849	chr4:118400849:T:C	rs1818521	T	C	-	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	118814185	118814186	chr4:118814186:T:C	rs114649974	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	118834165	118834166	chr4:118834166:C:T	rs115673173	C	T	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	118891183	118891184	chr4:118891184:C:G	rs10518320	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	118963945	118963946	chr4:118963946:A:G	rs56247710	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	119026032	119026033	chr4:119026033:A:G	rs7671665	A	G	A	Hoxa9_MA0594.1	8	1	-	8.88286440866876	2.009576358568872	GCAATGAATCA
chr4	119081356	119081357	chr4:119081357:C:T	rs114844288	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr4	119148490	119148491	chr4:119148491:C:A	rs6857405	C	A	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr4	119498620	119498621	chr4:119498621:C:T	rs61729962	C	T	.	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	119498632	119498633	chr4:119498633:T:C	rs202223380	T	C	.	Hoxa9_MA0594.1	5	1	+	9.123953740605721	11.544092747935409	CCCATTAATCA
chr4	119498650	119498651	chr4:119498651:G:A	rs140289122	G	A	.	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	120018977	120018978	chr4:120018978:C:T	rs17374036	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	120249821	120249822	chr4:120249822:T:C	rs1553689	T	C	T	Hoxa9_MA0594.1	7	1	-	9.60598952037383	2.703055846670909	GTCATCAATCT
chr4	120363068	120363069	chr4:120363069:C:G	rs72670497	C	G	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	120449139	120449140	chr4:120449140:C:G	rs143634173	C	G	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	120720539	120720540	chr4:120720540:C:T	rs78207313	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	120720570	120720571	chr4:120720571:A:G	rs17051233	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	121074542	121074543	chr4:121074543:G:A	rs2136948	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	121559646	121559647	chr4:121559647:C:A	rs12498520	C	A	c	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	121739094	121739095	chr4:121739095:A:G	rs2706785	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	122011241	122011242	chr4:122011242:C:T	rs80268314	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	122329878	122329879	chr4:122329879:A:G	rs150531103	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	122908532	122908533	chr4:122908533:C:T	rs4833846	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	123009361	123009362	chr4:123009362:G:A	rs4833261	G	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	123233921	123233922	chr4:123233922:T:G	rs303142	T	G	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	123599685	123599686	chr4:123599686:A:G	rs59791195	A	G	A	Hoxa9_MA0594.1	3	1	+	8.41793993009146	5.436143502682602	ACCATACATCA
chr4	123682957	123682958	chr4:123682958:A:C	rs112339757	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	123700376	123700377	chr4:123700377:A:T	rs74399044	A	T	A	Hoxa9_MA0594.1	1	1	-	9.736370122260793	8.425059106811483	CTCATAAATCT
chr4	123728809	123728810	chr4:123728810:C:A	rs1834379	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	123728849	123728850	chr4:123728850:A:G	rs1834378	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	123733415	123733416	chr4:123733416:T:C	rs4833941	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr4	123733416	123733417	chr4:123733417:G:A	rs4833287	G	A	g	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	123974602	123974603	chr4:123974603:G:C	rs949862	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	123984593	123984594	chr4:123984594:T:G	rs9884540	T	G	G	Hoxa9_MA0594.1	4	1	+	11.050956304149539	4.142201524834319	GCCATAAATCT
chr4	124019282	124019283	chr4:124019283:T:C	rs35050526	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	124137999	124138000	chr4:124138000:G:A	rs76582698	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	124174457	124174458	chr4:124174458:A:G	rs10021517	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	125070920	125070921	chr4:125070921:A:T	rs571363644	A	T	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	125228798	125228799	chr4:125228799:T:A	rs10003108	T	A	A	Hoxa9_MA0594.1	8	1	+	9.45271635848298	5.982956305383529	GCCATAAATAA
chr4	125651291	125651292	chr4:125651292:G:C	chr4:125651292:G:C	G	C	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	125651314	125651315	chr4:125651315:A:G	rs4834062	A	G	g	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	125762560	125762561	chr4:125762561:G:A	rs10018249	G	A	G	Hoxa9_MA0594.1	3	1	+	7.075594521334054	10.057390948742912	GCCGTAAATCC
chr4	126143514	126143515	chr4:126143515:T:C	rs574805	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	126143526	126143527	chr4:126143527:G:C	rs533667	G	C	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	126564474	126564475	chr4:126564475:A:C	rs313098	A	C	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	126630200	126630201	chr4:126630201:A:G	rs73846055	A	G	A	Hoxa9_MA0594.1	7	1	+	7.565650261440604	0.6627165877376848	GCCATAAAGCA
chr4	126655056	126655057	chr4:126655057:G:A	rs313122	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	126688708	126688709	chr4:126688709:A:G	rs313073	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	126757134	126757135	chr4:126757135:C:G	rs6839577	C	G	C	Hoxa9_MA0594.1	1	1	-	7.992188342502578	11.050956304149539	GGCATAAATCT
chr4	126938190	126938191	chr4:126938191:T:C	rs1877072	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	126987121	126987122	chr4:126987122:T:C	rs11936668	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	127058632	127058633	chr4:127058633:A:G	rs12498487	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	127058664	127058665	chr4:127058665:T:C	rs12510258	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	127237022	127237023	chr4:127237023:T:C	rs1992516	T	C	T	Hoxa9_MA0594.1	3	1	-	9.139216866859913	6.157420439451053	ACCATGAATCA
chr4	127237036	127237037	chr4:127237037:G:C	rs75080870	G	C	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	128289981	128289982	chr4:128289982:C:T	rs7682168	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	128519016	128519017	chr4:128519017:T:C	rs6534686	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	128553499	128553500	chr4:128553500:G:A	rs761411175	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	129218615	129218616	chr4:129218616:G:A	rs1017915409	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	129232074	129232075	chr4:129232075:G:A	rs73848973	G	A	A	Hoxa9_MA0594.1	1	1	-	8.707588800243967	7.816039039133571	CCTATAAATCT
chr4	129234432	129234433	chr4:129234433:A:G	rs6842443	A	G	A	Hoxa9_MA0594.1	0	1	+	9.181612572863987	10.046798085586536	ACTATCAATCA
chr4	129907388	129907389	chr4:129907389:G:T	rs2391521	G	T	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	130077316	130077317	chr4:130077317:T:C	rs2221618	T	C	T	Hoxa9_MA0594.1	7	1	-	9.452499902096816	2.5495662283938967	AACATAAATCA
chr4	130567403	130567404	chr4:130567404:T:C	rs10022058	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	130639980	130639981	chr4:130639981:T:C	rs2054931	T	C	T	Hoxa9_MA0594.1	5	1	-	9.037868572125442	6.521724760328831	GTAATAAATCT
chr4	130712298	130712299	chr4:130712299:G:A	rs12501741	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	131509863	131509864	chr4:131509864:T:C	rs11932734	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr4	131584404	131584405	chr4:131584405:T:A	rs142745428	T	A	T	Hoxa9_MA0594.1	8	1	+	8.702990986792262	5.23323093369281	CCCATCTATCA
chr4	132599990	132599991	chr4:132599991:C:T	rs12643115	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	133572070	133572071	chr4:133572071:A:G	rs181040389	A	G	a	Hoxa9_MA0594.1	22	0	-	0	0	.
chr4	133598990	133598991	chr4:133598991:A:T	rs77642779	A	T	A	Hoxa9_MA0594.1	8	1	-	8.41793993009146	4.9481798769920085	ACCATACATCA
chr4	133682094	133682095	chr4:133682095:A:G	rs2036646	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	133731889	133731890	chr4:133731890:G:T	rs113428360	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	134306586	134306587	chr4:134306587:A:T	rs76837347	A	T	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr4	134544584	134544585	chr4:134544585:G:A	rs182477049	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	134935453	134935454	chr4:134935454:C:T	rs7693757	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	134935497	134935498	chr4:134935498:C:G	rs4863923	C	G	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr4	135192093	135192094	chr4:135192094:G:A	rs2007429	G	A	a	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	135365195	135365196	chr4:135365196:G:C	rs368764964	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	135787361	135787362	chr4:135787362:G:T	rs72982898	G	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	136061145	136061146	chr4:136061146:A:G	chr4:136061146:A:G	A	G	A	Hoxa9_MA0594.1	0	1	+	9.632353768761673	10.497539281484224	ACCATCAATCT
chr4	136736115	136736116	chr4:136736116:C:T	rs17617045	C	T	C	Hoxa9_MA0594.1	8	1	-	7.0122332387752895	8.497369115614307	GCCATCAAGCA
chr4	136818578	136818579	chr4:136818579:G:A	rs898430	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr4	136829714	136829715	chr4:136829715:C:A	rs146284984	C	A	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	137046676	137046677	chr4:137046677:T:C	rs17629846	T	C	T	Hoxa9_MA0594.1	1	1	-	9.452499902096816	8.59659271700956	AACATAAATCA
chr4	137095846	137095847	chr4:137095847:C:A	rs28726172	C	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr4	137376348	137376349	chr4:137376349:T:C	rs12648432	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	137602199	137602200	chr4:137602200:C:T	rs78640598	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	137621127	137621128	chr4:137621128:G:T	rs9995514	G	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	138407040	138407041	chr4:138407041:T:G	rs6853733	T	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr4	138602644	138602645	chr4:138602645:C:T	rs6844523	C	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	138670061	138670062	chr4:138670062:G:A	rs28530586	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	138798549	138798550	chr4:138798550:A:T	rs6825117	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	138804868	138804869	chr4:138804869:C:G	chr4:138804869:C:G	C	G	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	138824975	138824976	chr4:138824976:A:G	rs6846988	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	138826941	138826942	chr4:138826942:A:G	rs6419267	A	G	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	138871146	138871147	chr4:138871147:G:T	rs6823871	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	138940047	138940048	chr4:138940048:G:T	rs6535790	G	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr4	139172410	139172411	chr4:139172411:C:T	rs4597768	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	139172411	139172412	chr4:139172412:G:A	rs72629204	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	139239831	139239832	chr4:139239832:A:G	rs78924895	A	G	a	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	139300275	139300276	chr4:139300276:G:A	rs34934709	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr4	139558906	139558907	chr4:139558907:C:G	rs76530184	C	G	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr4	139809051	139809052	chr4:139809052:A:G	rs73854362	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	139856912	139856913	chr4:139856913:A:G	rs10018246	A	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	139958665	139958666	chr4:139958666:G:C	rs77909989	G	C	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	140019209	140019210	chr4:140019210:A:C	rs7674555	A	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	140236833	140236834	chr4:140236834:C:T	rs17005648	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	140252166	140252167	chr4:140252167:G:C	rs1392996592	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	140302311	140302312	chr4:140302312:G:C	rs60648966	G	C	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr4	140689018	140689019	chr4:140689019:T:C	rs4956475	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	140726945	140726946	chr4:140726946:C:T	rs72720317	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr4	140913838	140913839	chr4:140913839:G:T	rs11735986	G	T	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	140935152	140935153	chr4:140935153:C:T	rs11944147	C	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	141214593	141214594	chr4:141214594:A:G	rs6855160	A	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	141214638	141214639	chr4:141214639:T:C	rs10020128	T	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	141483997	141483998	chr4:141483998:G:C	rs2090878	G	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	141760375	141760376	chr4:141760376:T:G	rs116001265	T	G	T	Hoxa9_MA0594.1	6	1	-	8.58753084576043	5.350110097195369	ACCATAAATAA
chr4	141814627	141814628	chr4:141814628:T:A	rs17645483	T	A	.	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	141814702	141814703	chr4:141814703:A:G	rs6840541	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	142607859	142607860	chr4:142607860:A:G	rs13120964	A	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	142764081	142764082	chr4:142764082:T:C	chr4:142764082:T:C	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	143403867	143403868	chr4:143403868:A:C	rs10519691	A	C	A	Hoxa9_MA0594.1	3	1	+	8.209854543006394	4.281640118527153	GCCATATATCT
chr4	143921751	143921752	chr4:143921752:C:T	rs3856989	C	T	.	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	144461374	144461375	chr4:144461375:C:T	rs55694701	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	144536848	144536849	chr4:144536849:C:A	rs7674469	C	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	145181068	145181069	chr4:145181069:A:G	rs138810792	A	G	A	Hoxa9_MA0594.1	3	1	+	9.552544425392455	6.570747997983595	TCCATAAATCA
chr4	145344016	145344017	chr4:145344017:A:G	rs12501950	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	145694846	145694847	chr4:145694847:C:T	rs9996564	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	146946154	146946155	chr4:146946155:T:C	rs3827595	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	147054802	147054803	chr4:147054803:T:C	rs144733637	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	147123589	147123590	chr4:147123590:T:C	rs10012343	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr4	147161000	147161001	chr4:147161001:A:G	rs28568982	A	G	A	Hoxa9_MA0594.1	7	1	+	9.980405685077507	3.0774720113745864	ACAATCAATCA
chr4	147597093	147597094	chr4:147597094:C:T	rs10434124	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	147597113	147597114	chr4:147597114:T:C	rs10434125	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	147678138	147678139	chr4:147678139:T:C	rs7660361	T	C	T	Hoxa9_MA0594.1	7	1	-	8.510815797847973	1.6078821241450525	ACAATCAATCT
chr4	147780195	147780196	chr4:147780196:A:G	rs1271663030	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	147844981	147844982	chr4:147844982:C:T	rs75988127	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	147924989	147924990	chr4:147924990:A:G	rs74565140	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	148270649	148270650	chr4:148270650:G:A	rs6826471	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	148270650	148270651	chr4:148270651:T:G	rs147725726	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	148370066	148370067	chr4:148370067:C:A	rs61762849	C	A	c	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	148721990	148721991	chr4:148721991:A:G	rs7681551	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr4	148956156	148956157	chr4:148956157:C:T	rs13133607	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	148956197	148956198	chr4:148956198:G:A	rs17025527	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	149122674	149122675	chr4:149122675:G:A	rs10028420	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	149202358	149202359	chr4:149202359:G:A	rs12171349	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	149264286	149264287	chr4:149264287:T:C	rs1040414625	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	149552679	149552680	chr4:149552680:C:A	rs2654804	C	A	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	150033897	150033898	chr4:150033898:C:T	rs6854961	C	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	150141019	150141020	chr4:150141020:G:A	rs6816597	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr4	150176239	150176240	chr4:150176240:C:T	rs6821618	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	150298484	150298485	chr4:150298485:A:C	rs76930340	A	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr4	150324301	150324302	chr4:150324302:T:C	rs10010954	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	150405111	150405112	chr4:150405112:T:G	rs17588916	T	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	150533901	150533902	chr4:150533902:G:A	rs28550140	G	A	G	Hoxa9_MA0594.1	2	1	-	9.050786138279621	7.130455055152399	GCCATAAAACA
chr4	150533928	150533929	chr4:150533929:C:T	rs1995540	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	150569774	150569775	chr4:150569775:A:C	rs551802155	A	C	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	151628094	151628095	chr4:151628095:G:A	rs718801	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr4	151853671	151853672	chr4:151853672:T:C	rs361104	T	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	152610437	152610438	chr4:152610438:C:G	rs10517566	C	G	C	Hoxa9_MA0594.1	10	1	+	7.854530172183207	3.6809124290665984	GACATAAATCC
chr4	152663113	152663114	chr4:152663114:T:A	rs75122642	T	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	152894640	152894641	chr4:152894641:A:T	rs62319950	A	T	A	Hoxa9_MA0594.1	8	1	-	7.301113149517894	3.8313530964184412	GACATCAATCC
chr4	152930071	152930072	chr4:152930072:G:C	rs11938366	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	153166367	153166368	chr4:153166368:C:T	rs4696428	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	153207118	153207119	chr4:153207119:T:C	rs4631020	T	C	T	Hoxa9_MA0594.1	1	1	+	8.843479834418904	9.7350295955293	ATTATAAATCA
chr4	153465616	153465617	chr4:153465617:G:A	rs9990507	G	A	G	Hoxa9_MA0594.1	0	1	+	8.13705986561569	7.271874352893139	GCTATAAATCC
chr4	153933438	153933439	chr4:153933439:A:G	rs4411966	A	G	G	Hoxa9_MA0594.1	3	1	+	10.422554777021706	7.440758349612847	CCAATCAATCA
chr4	154077104	154077105	chr4:154077105:A:G	rs4696198	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	155338257	155338258	chr4:155338258:G:A	rs7655819	G	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr4	155415937	155415938	chr4:155415938:T:C	rs1219169352	T	C	T	Hoxa9_MA0594.1	0	1	-	9.08885592396711	9.95404143668966	ATAATCAATCA
chr4	155599328	155599329	chr4:155599329:C:T	rs77869560	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	155630907	155630908	chr4:155630908:T:A	rs4691805	T	A	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	155654090	155654091	chr4:155654091:C:T	rs12506280	C	T	C	Hoxa9_MA0594.1	1	1	+	7.7140234448373395	6.822473683726944	CCTATAAATCC
chr4	155906748	155906749	chr4:155906749:G:A	rs141897047	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	155954890	155954891	chr4:155954891:C:T	rs72683506	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	156046742	156046743	chr4:156046743:T:A	rs4305470	T	A	-	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	156169819	156169820	chr4:156169820:G:T	rs34034793	G	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr4	156169844	156169845	chr4:156169845:A:G	rs55713660	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	156187137	156187138	chr4:156187138:A:G	rs13115068	A	G	G	Hoxa9_MA0594.1	7	1	+	7.811441225681866	0.9085075519789467	CTCATCTATCA
chr4	156476456	156476457	chr4:156476457:C:T	rs562388589	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	156751753	156751754	chr4:156751754:G:A	rs10016337	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	156993053	156993054	chr4:156993054:A:G	rs948558179	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	157271370	157271371	chr4:157271371:G:T	rs868394608	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	157460715	157460716	chr4:157460716:C:T	rs62330113	C	T	T	Hoxa9_MA0594.1	1	1	+	8.774295001881132	7.882745240770737	GCAATAAATTA
chr4	157879193	157879194	chr4:157879194:C:T	rs34898363	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	157961636	157961637	chr4:157961637:A:G	rs72689905	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	157996890	157996891	chr4:157996891:G:A	rs11100145	G	A	g	Hoxa9_MA0594.1	0	1	+	8.93585297782921	8.07066746510666	GCAATAAATCC
chr4	157996916	157996917	chr4:157996917:A:G	rs895735247	A	G	a	Hoxa9_MA0594.1	26	0	+	0	0	.
chr4	158197568	158197569	chr4:158197569:A:G	rs182197036	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	158275465	158275466	chr4:158275466:T:C	rs4518300	T	C	C	Hoxa9_MA0594.1	1	1	+	8.655440400273676	9.546990161384072	GTCATTAATCA
chr4	158938408	158938409	chr4:158938409:G:A	rs74656399	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr4	159166334	159166335	chr4:159166335:G:A	rs112795845	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	159547164	159547165	chr4:159547165:G:T	rs62339593	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	159565251	159565252	chr4:159565252:T:C	rs73859189	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	159725729	159725730	chr4:159725730:C:T	rs76879058	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	159954367	159954368	chr4:159954368:A:T	rs10031385	A	T	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr4	160353133	160353134	chr4:160353134:C:T	rs294507	C	T	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	160424280	160424281	chr4:160424281:T:C	rs972469	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	160811184	160811185	chr4:160811185:T:A	rs6536540	T	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	161237141	161237142	chr4:161237142:A:G	rs1444278	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	161680929	161680930	chr4:161680930:T:C	rs4596203	T	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr4	161823106	161823107	chr4:161823107:G:A	rs149528481	G	A	g	Hoxa9_MA0594.1	1	1	-	12.520546191379072	11.628996430268678	GCCATAAATCA
chr4	161930300	161930301	chr4:161930301:T:C	rs359490	T	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	162627890	162627891	chr4:162627891:G:A	rs195962	G	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	162740538	162740539	chr4:162740539:C:T	rs11947901	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr4	163173340	163173341	chr4:163173341:A:G	rs141102657	A	G	A	Hoxa9_MA0594.1	7	1	+	8.306671999370346	1.4037383256674265	CCCATCCATCA
chr4	163954600	163954601	chr4:163954601:T:G	rs35624441	T	G	t	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	163992117	163992118	chr4:163992118:T:A	rs11736133	T	A	T	Hoxa9_MA0594.1	4	1	+	8.425452190470368	1.5166974111551483	GCAATTAATCA
chr4	164177205	164177206	chr4:164177206:T:C	rs7697191	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	164526958	164526959	chr4:164526959:C:T	rs74356363	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr4	165344110	165344111	chr4:165344111:A:G	rs9308103	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr4	165360242	165360243	chr4:165360243:C:T	rs9991956	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	165519060	165519061	chr4:165519061:C:A	rs72705414	C	A	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	165555235	165555236	chr4:165555236:G:T	rs2139210	G	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	166156459	166156460	chr4:166156460:A:C	rs11939812	A	C	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr4	166280789	166280790	chr4:166280790:A:G	rs391309	A	G	A	Hoxa9_MA0594.1	7	1	+	7.994175372278161	1.0912416985752418	CCAGTAAATCA
chr4	166494014	166494015	chr4:166494015:C:G	rs9998119	C	G	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	166891811	166891812	chr4:166891812:G:A	rs10001800	G	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	166972207	166972208	chr4:166972208:G:A	rs143759131	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	167087599	167087600	chr4:167087600:C:T	rs7688165	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	167883496	167883497	chr4:167883497:T:C	rs559493774	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	168058164	168058165	chr4:168058165:C:A	rs11132004	C	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr4	168367273	168367274	chr4:168367274:G:A	rs2684360	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	168381001	168381002	chr4:168381002:G:C	rs2319811	G	C	G	Hoxa9_MA0594.1	2	1	-	7.727146254177281	1.2032462664289425	ACCCTAAATCA
chr4	168506234	168506235	chr4:168506235:A:G	rs12648051	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr4	168514627	168514628	chr4:168514628:C:T	rs13120709	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	168560955	168560956	chr4:168560956:A:G	rs79905534	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr4	168607386	168607387	chr4:168607387:A:G	rs11728258	A	G	G	Hoxa9_MA0594.1	8	1	-	9.95404143668966	3.080753386589772	GTAATCAATCA
chr4	168611331	168611332	chr4:168611332:A:G	rs12648174	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr4	168720731	168720732	chr4:168720732:A:C	rs17542402	A	C	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	168801840	168801841	chr4:168801841:A:G	rs17614822	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr4	168924568	168924569	chr4:168924569:C:T	rs4396955	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr4	169070346	169070347	chr4:169070347:G:A	rs6821924	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr4	169078587	169078588	chr4:169078588:G:T	rs35281738	G	T	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	169757530	169757531	chr4:169757531:G:A	rs116596756	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr4	169872922	169872923	chr4:169872923:C:A	rs10029344	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr4	169919575	169919576	chr4:169919576:C:T	rs79183989	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	169947211	169947212	chr4:169947212:T:C	rs13132348	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	169971466	169971467	chr4:169971467:G:A	rs3797042	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	169986643	169986644	chr4:169986644:A:T	rs12509103	A	T	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	170034216	170034217	chr4:170034217:G:T	rs11728005	G	T	G	Hoxa9_MA0594.1	5	1	-	8.642730421240351	9.196147443905666	GAAATCAATCA
chr4	170652668	170652669	chr4:170652669:C:G	rs28635058	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	170684794	170684795	chr4:170684795:T:C	rs4692849	T	C	T	Hoxa9_MA0594.1	7	1	-	8.260841894848062	1.3579082211451419	ACCATCTATCA
chr4	171285188	171285189	chr4:171285189:G:A	rs62325878	G	A	G	Hoxa9_MA0594.1	0	1	+	8.88286440866876	8.01767889594621	GCAATGAATCA
chr4	171565180	171565181	chr4:171565181:A:G	rs6553576	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr4	171880096	171880097	chr4:171880097:T:C	rs17057538	T	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr4	172035655	172035656	chr4:172035656:A:G	rs12510734	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	172954145	172954146	chr4:172954146:T:A	rs2610195	T	A	a	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	173047009	173047010	chr4:173047010:A:G	rs144970655	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	173153443	173153444	chr4:173153444:T:G	rs2006808	T	G	T	Hoxa9_MA0594.1	4	1	+	9.634354527964561	2.7255997486493415	CCCATAAATCC
chr4	173168173	173168174	chr4:173168174:A:G	rs571924780	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	173448756	173448757	chr4:173448757:C:T	rs1561792	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr4	173685658	173685659	chr4:173685659:C:A	rs75002406	C	A	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr4	173708158	173708159	chr4:173708159:A:G	rs75291101	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	174024105	174024106	chr4:174024106:C:T	rs13113162	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	174189818	174189819	chr4:174189819:C:T	rs12643048	C	T	C	Hoxa9_MA0594.1	5	1	+	9.181612572863987	6.761473565534297	ACTATCAATCA
chr4	174229011	174229012	chr4:174229012:A:G	rs17060409	A	G	G	Hoxa9_MA0594.1	3	1	+	11.544092747935409	8.56229632052655	CCCATCAATCA
chr4	174319397	174319398	chr4:174319398:G:C	rs1323957871	G	C	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr4	174390770	174390771	chr4:174390771:C:T	rs77652569	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	174582618	174582619	chr4:174582619:T:C	rs7662981	T	C	T	Hoxa9_MA0594.1	3	1	-	8.68180464866152	5.700008221252661	ACCATTAATCA
chr4	174593146	174593147	chr4:174593147:C:T	rs114045484	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr4	174718099	174718100	chr4:174718100:G:T	rs10035036	G	T	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	174718287	174718288	chr4:174718288:T:C	rs7658547	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	174827036	174827037	chr4:174827037:G:T	rs10017956	G	T	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr4	174841892	174841893	chr4:174841893:A:T	rs7692365	A	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	175068637	175068638	chr4:175068638:T:C	rs72698605	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	175720301	175720302	chr4:175720302:A:G	rs77545468	A	G	A	Hoxa9_MA0594.1	6	1	+	8.425059106811483	1.6074583210558264	CACATAAATCT
chr4	175720315	175720316	chr4:175720316:A:G	rs2581761	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	176052844	176052845	chr4:176052845:C:T	rs77552758	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr4	176067680	176067681	chr4:176067681:T:C	rs6814389	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	176084891	176084892	chr4:176084892:T:C	rs12641442	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr4	176325136	176325137	chr4:176325137:G:C	rs1840270	G	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	176451601	176451602	chr4:176451602:G:A	rs2167096	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr4	176575412	176575413	chr4:176575413:C:T	rs17063298	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	176781608	176781609	chr4:176781609:C:A	rs190113857	C	A	C	Hoxa9_MA0594.1	0	1	-	7.541247136946303	4.573245370959683	GCCATGAATCC
chr4	176789394	176789395	chr4:176789395:A:G	rs716712	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr4	177389611	177389612	chr4:177389612:T:G	rs13108563	T	G	T	Hoxa9_MA0594.1	3	1	-	9.60598952037383	5.677775095894589	GTCATCAATCT
chr4	177451620	177451621	chr4:177451621:A:G	rs6832802	A	G	A	Hoxa9_MA0594.1	10	1	+	11.205960009490326	4.569187023737557	CTCATAAATCA
chr4	177586624	177586625	chr4:177586625:G:C	rs1920966	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr4	177644934	177644935	chr4:177644935:C:T	rs34991612	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	178185580	178185581	chr4:178185581:G:A	rs7699641	G	A	G	Hoxa9_MA0594.1	2	1	-	9.123953740605721	7.203622657478498	CCCATTAATCA
chr4	178614496	178614497	chr4:178614497:G:A	rs1036314	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	179569842	179569843	chr4:179569843:C:T	rs3905711	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr4	179595902	179595903	chr4:179595903:C:T	rs68158635	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	179802016	179802017	chr4:179802017:T:C	rs35674693	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr4	180020489	180020490	chr4:180020490:A:T	rs2309135	A	T	.	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	180164940	180164941	chr4:180164941:A:T	rs1026073	A	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	180401729	180401730	chr4:180401730:C:T	rs62335706	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr4	180699093	180699094	chr4:180699094:G:A	rs12642879	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr4	180953697	180953698	chr4:180953698:T:C	rs143774823	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	181030532	181030533	chr4:181030533:C:G	rs4273513	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	181030862	181030863	chr4:181030863:A:G	rs112436841	A	G	-	Hoxa9_MA0594.1	3	1	+	8.88286440866876	5.901067981259902	GCAATGAATCA
chr4	181030871	181030872	chr4:181030872:G:A	rs192633533	G	A	-	Hoxa9_MA0594.1	12	0	+	0	0	.
chr4	181030889	181030890	chr4:181030890:C:A	rs4861461	C	A	-	Hoxa9_MA0594.1	30	0	+	0	0	.
chr4	181264796	181264797	chr4:181264797:A:G	rs6844811	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr4	181264797	181264798	chr4:181264798:C:T	rs58494574	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	181281345	181281346	chr4:181281346:T:C	rs6831337	T	C	T	Hoxa9_MA0594.1	7	1	-	9.00428321168444	2.101349537981519	GTCATAAATTA
chr4	181701564	181701565	chr4:181701565:T:C	rs7679830	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	181754090	181754091	chr4:181754091:G:A	rs4400033	G	A	G	Hoxa9_MA0594.1	0	1	+	10.60021510825185	9.7350295955293	GCTATAAATCA
chr4	182105747	182105748	chr4:182105748:C:T	rs7673611	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr4	182143843	182143844	chr4:182143844:C:T	rs141791355	C	T	C	Hoxa9_MA0594.1	2	1	+	8.169295346121482	6.248964262994259	CCCCTAAATCA
chr4	182143866	182143867	chr4:182143867:A:G	rs921331	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr4	182210072	182210073	chr4:182210073:C:G	rs188676712	C	G	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	182224091	182224092	chr4:182224092:T:A	rs17072897	T	A	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr4	182240133	182240134	chr4:182240134:A:C	rs7663302	A	C	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	182584368	182584369	chr4:182584369:C:G	rs13107775	C	G	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr4	182766635	182766636	chr4:182766636:T:C	rs10017238	T	C	T	Hoxa9_MA0594.1	4	1	+	8.260841894848062	1.3520871155328416	ACCATCTATCA
chr4	182892271	182892272	chr4:182892272:C:T	rs12507552	C	T	T	Hoxa9_MA0594.1	9	1	+	10.004402379582464	7.3796891609982245	GCCATGAATCA
chr4	183018987	183018988	chr4:183018988:G:A	rs9312310	G	A	G	Hoxa9_MA0594.1	9	1	-	7.565650261440604	4.9409370428563655	GCCATAAAGCA
chr4	183229587	183229588	chr4:183229588:T:C	chr4:183229588:T:C	T	C	T	Hoxa9_MA0594.1	4	1	+	7.968539260925265	1.0597844816100452	CTCATACATCA
chr4	183229607	183229608	chr4:183229608:G:T	rs114006223	G	T	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr4	183485952	183485953	chr4:183485953:G:C	rs60638998	G	C	t	Hoxa9_MA0594.1	16	0	+	0	0	.
chr4	184257066	184257067	chr4:184257067:C:T	rs4862344	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr4	184270385	184270386	chr4:184270386:T:C	rs562725471	T	C	t	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	184563724	184563725	chr4:184563725:A:C	rs35493127	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	184563743	184563744	chr4:184563744:A:G	rs67797822	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr4	184570683	184570684	chr4:184570684:A:G	rs10520563	A	G	a	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr4	184592720	184592721	chr4:184592721:T:A	rs6842425	T	A	T	Hoxa9_MA0594.1	8	1	+	9.929418333235837	6.459658280136385	GCAATAAATCT
chr4	184618744	184618745	chr4:184618745:T:A	rs2091476	T	A	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	184618747	184618748	chr4:184618748:G:A	rs2141256	G	A	-	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr4	184850969	184850970	chr4:184850970:G:A	rs62338251	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr4	184915103	184915104	chr4:184915104:T:C	rs4862464	T	C	T	Hoxa9_MA0594.1	3	1	-	9.064232820513286	6.082436393104428	ACAATAAATCT
chr4	184937476	184937477	chr4:184937477:C:T	rs6838025	C	T	C	Hoxa9_MA0594.1	1	1	+	8.11177607157458	7.2202263104641835	CCCATGAATCT
chr4	184937492	184937493	chr4:184937493:G:C	rs6838366	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr4	185245007	185245008	chr4:185245008:G:A	rs3108258	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr4	185467188	185467189	chr4:185467189:T:C	rs7677639	T	C	t	Hoxa9_MA0594.1	3	1	-	7.6696269796303795	4.68783055222152	ACCATGAATCT
chr4	185810718	185810719	chr4:185810719:A:G	rs73017857	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr4	186030763	186030764	chr4:186030764:T:C	rs116709862	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr4	186088949	186088950	chr4:186088950:C:T	rs4608848	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	186158028	186158029	chr4:186158029:G:A	rs12504044	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr4	186297263	186297264	chr4:186297264:C:T	chr4:186297264:C:T	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr4	186297285	186297286	chr4:186297286:C:T	rs34898834	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	186447309	186447310	chr4:186447310:G:A	rs4862699	G	A	A	Hoxa9_MA0594.1	1	1	-	9.623761664808185	8.73221190369779	CCTATCAATCA
chr4	186641523	186641524	chr4:186641524:G:A	rs114083248	G	A	G	Hoxa9_MA0594.1	5	1	-	11.101943655991207	8.68180464866152	ACCATCAATCA
chr4	186644734	186644735	chr4:186644735:C:A	rs75898359	C	A	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr4	186821931	186821932	chr4:186821932:C:T	rs75718659	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr4	186821943	186821944	chr4:186821944:C:G	rs12646515	C	G	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr4	186978079	186978080	chr4:186978080:T:C	rs6553030	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr4	187048012	187048013	chr4:187048013:G:A	rs34031283	G	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr4	187101831	187101832	chr4:187101832:G:C	rs6553037	G	C	G	Hoxa9_MA0594.1	1	1	-	8.18560062555707	5.1268326639101085	ACCATAAAACA
chr4	187109746	187109747	chr4:187109747:G:A	rs1487590	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr4	187176313	187176314	chr4:187176314:G:A	rs13113128	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	187181425	187181426	chr4:187181426:C:T	rs767268644	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr4	187426240	187426241	chr4:187426241:A:G	rs978629	A	G	A	Hoxa9_MA0594.1	8	1	-	9.285628926363104	2.412340876263215	CTTATAAATCA
chr4	188346436	188346437	chr4:188346437:G:A	rs72711459	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr4	188869867	188869868	chr4:188869868:T:C	rs62341821	T	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr4	188930834	188930835	chr4:188930835:A:G	rs2166951	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr4	189022559	189022560	chr4:189022560:A:C	rs74609709	A	C	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr4	189123219	189123220	chr4:189123220:G:T	rs7690324	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr4	189129487	189129488	chr4:189129488:C:G	rs11724646	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr4	189203370	189203371	chr4:189203371:G:A	rs189662037	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr4	190108238	190108239	chr4:190108239:T:C	rs1462940962	T	C	.	Hoxa9_MA0594.1	3	1	-	7.6543638533761875	4.672567425967328	CCCATTAATCT
chr4	190108253	190108254	chr4:190108254:G:T	rs1163957072	G	T	.	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	153314	153315	chr5:153315:C:T	rs77811383	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	214011	214012	chr5:214012:T:C	rs2099084	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	317360	317361	chr5:317361:C:T	rs183673588	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	317362	317363	chr5:317363:T:C	chr5:317363:T:C	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	317366	317367	chr5:317367:C:T	rs977371366	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	317404	317405	chr5:317405:T:C	rs55847527	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	418552	418553	chr5:418553:C:T	rs10059358	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	582553	582554	chr5:582554:A:G	rs56278696	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	1138158	1138159	chr5:1138159:T:C	rs4131150	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	1364902	1364903	chr5:1364903:T:C	rs113838085	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	1394961	1394962	chr5:1394962:C:T	rs40184	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	1418442	1418443	chr5:1418443:C:T	rs10040882	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	1418629	1418630	chr5:1418630:G:C	rs12332091	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr5	1473444	1473445	chr5:1473445:T:C	rs28336	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	1566854	1566855	chr5:1566855:C:T	rs4975661	C	T	C	Hoxa9_MA0594.1	5	1	+	9.080937505299248	6.6607984979695605	CCCATCAATCC
chr5	1692865	1692866	chr5:1692866:C:T	rs113417844	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	1826264	1826265	chr5:1826265:G:A	rs58926651	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	1842457	1842458	chr5:1842458:T:C	rs736228	T	C	T	Hoxa9_MA0594.1	0	1	-	8.843479834418904	9.708665347141455	ATTATAAATCA
chr5	2172824	2172825	chr5:2172825:C:T	rs143280992	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	2191224	2191225	chr5:2191225:C:T	rs13181974	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	2611881	2611882	chr5:2611882:A:G	rs10512677	A	G	a	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	2626915	2626916	chr5:2626916:A:G	rs6864728	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	2635776	2635777	chr5:2635777:A:G	rs6555117	A	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	2643478	2643479	chr5:2643479:G:A	rs77295740	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	2782600	2782601	chr5:2782601:G:A	rs1024052	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	2841474	2841475	chr5:2841475:C:G	rs4866686	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	2908501	2908502	chr5:2908502:G:A	rs1565808	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	2983966	2983967	chr5:2983967:C:A	rs6861422	C	A	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	3033786	3033787	chr5:3033787:C:T	rs62334537	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	3060796	3060797	chr5:3060797:G:C	rs6555172	G	C	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	3060928	3060929	chr5:3060929:C:T	rs138512628	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	3068875	3068876	chr5:3068876:A:T	rs2447672	A	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr5	3092794	3092795	chr5:3092795:G:A	rs16871061	G	A	G	Hoxa9_MA0594.1	1	1	-	8.038914744234518	7.147364983124122	GCCCTCAATCA
chr5	3109614	3109615	chr5:3109615:G:A	rs72729387	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	3200472	3200473	chr5:3200473:A:G	rs2404272	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	3206421	3206422	chr5:3206422:T:C	rs1691035	T	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	3223305	3223306	chr5:3223306:G:A	rs1215687	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	3309906	3309907	chr5:3309907:T:A	rs9313044	T	A	A	Hoxa9_MA0594.1	2	1	+	9.181612572863987	9.980405685077507	ACTATCAATCA
chr5	3310957	3310958	chr5:3310958:G:A	rs115188022	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	3364750	3364751	chr5:3364751:T:A	rs57580990	T	A	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	3397443	3397444	chr5:3397444:G:A	rs924609	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	3427872	3427873	chr5:3427873:C:A	rs369253	C	A	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	3574449	3574450	chr5:3574450:C:T	rs6867471	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	3836306	3836307	chr5:3836307:T:A	rs140314146	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	4001240	4001241	chr5:4001241:G:A	rs10058753	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	4020486	4020487	chr5:4020487:G:A	rs11738089	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	4093415	4093416	chr5:4093416:C:T	rs1187475	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	4356335	4356336	chr5:4356336:C:T	rs155034	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	4387543	4387544	chr5:4387544:A:G	rs261192	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	4480977	4480978	chr5:4480978:G:A	rs4257741	G	A	G	Hoxa9_MA0594.1	0	1	-	9.02967993770463	6.4847145924963625	CCCATAAATAA
chr5	4646989	4646990	chr5:4646990:G:T	rs10045887	G	T	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	4927356	4927357	chr5:4927357:G:A	rs116373431	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	5014958	5014959	chr5:5014959:G:A	rs186989555	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	5014996	5014997	chr5:5014997:C:T	rs191960973	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	5138627	5138628	chr5:5138628:C:T	rs11134093	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	5166081	5166082	chr5:5166082:A:T	rs1079296	A	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	5200167	5200168	chr5:5200168:C:T	rs6555335	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	5274301	5274302	chr5:5274302:A:G	rs10045494	A	G	a	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	5361355	5361356	chr5:5361356:G:T	rs2964459	G	T	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	5422319	5422320	chr5:5422320:C:T	rs538817586	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	5422323	5422324	chr5:5422324:C:G	rs1001219774	C	G	c	Hoxa9_MA0594.1	1	1	+	7.618418680842992	4.55965071919603	GCTGTAAATCA
chr5	5422345	5422346	chr5:5422346:T:C	rs151085383	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	5550550	5550551	chr5:5550551:G:T	rs252836	G	T	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	5588585	5588586	chr5:5588586:T:C	rs26426	T	C	C	Hoxa9_MA0594.1	10	1	-	9.285628926363104	2.6488559406103356	CTTATAAATCA
chr5	5615814	5615815	chr5:5615815:T:A	rs411052	T	A	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	5648683	5648684	chr5:5648684:T:C	rs35231852	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	5679056	5679057	chr5:5679057:G:C	chr5:5679057:G:C	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	5710774	5710775	chr5:5710775:T:G	rs74941215	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	5798739	5798740	chr5:5798740:C:T	rs32558	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	5881583	5881584	chr5:5881584:T:C	rs13189549	T	C	C	Hoxa9_MA0594.1	10	1	-	6.982587615172259	0.3458146294194897	GCCATCACTCA
chr5	6202682	6202683	chr5:6202683:A:C	rs2937779	A	C	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	6601384	6601385	chr5:6601385:C:G	rs3776442	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr5	6604025	6604026	chr5:6604026:A:C	rs76534720	A	C	A	Hoxa9_MA0594.1	6	1	+	9.45271635848298	6.21529560991792	GCCATAAATAA
chr5	6624281	6624282	chr5:6624282:G:A	rs62348980	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	6645044	6645045	chr5:6645045:A:G	rs8192181	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr5	6645049	6645050	chr5:6645050:G:A	rs8192182	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	7190852	7190853	chr5:7190853:G:T	rs139359915	G	T	G	Hoxa9_MA0594.1	5	1	-	7.260118532919163	7.813535555584478	GCCATCCATCT
chr5	7271908	7271909	chr5:7271909:A:G	rs62341785	A	G	A	Hoxa9_MA0594.1	8	1	+	8.62774971750127	7.1426138406622535	CCCATAAAACA
chr5	7315438	7315439	chr5:7315439:T:C	rs11959795	T	C	t	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	7445252	7445253	chr5:7445253:G:A	rs7715966	G	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	7525809	7525810	chr5:7525810:A:G	rs78880833	A	G	A	Hoxa9_MA0594.1	8	1	-	10.763810917546127	3.8905228674462373	ATCATAAATCA
chr5	7712586	7712587	chr5:7712587:A:G	rs7704763	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	8288012	8288013	chr5:8288013:C:A	rs79574392	C	A	C	Hoxa9_MA0594.1	1	1	+	8.4262430855653	6.223382309005595	GCCATAAATTT
chr5	8601681	8601682	chr5:8601682:A:C	rs2859843	A	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	8810913	8810914	chr5:8810914:T:C	rs3105426	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	8937052	8937053	chr5:8937053:A:G	rs2962650	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	9209833	9209834	chr5:9209834:T:A	rs1805963	T	A	A	Hoxa9_MA0594.1	8	1	+	8.425059106811483	4.955299053712031	CACATAAATCT
chr5	9239314	9239315	chr5:9239315:G:C	rs1806004	G	C	G	Hoxa9_MA0594.1	5	1	-	7.632183602891756	5.66945681376046	ACCATCAAACA
chr5	9348308	9348309	chr5:9348309:C:A	rs17196593	C	A	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	9401924	9401925	chr5:9401925:A:C	rs447322	A	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	9505731	9505732	chr5:9505732:T:A	rs952098202	T	A	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	9681685	9681686	chr5:9681686:C:T	rs12109904	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	9733663	9733664	chr5:9733664:G:A	rs376461374	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	9925801	9925802	chr5:9925802:G:A	rs68003943	G	A	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	9925820	9925821	chr5:9925821:A:T	rs72734863	A	T	A	Hoxa9_MA0594.1	8	1	-	9.764268392154055	6.294508339054602	GACATCAATCA
chr5	10223246	10223247	chr5:10223247:T:C	rs4702679	T	C	T	Hoxa9_MA0594.1	10	1	-	7.801541603022757	1.1647686172699885	GACATGAATCA
chr5	10233875	10233876	chr5:10233876:G:A	rs11133604	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	10258012	10258013	chr5:10258013:G:A	rs2457156	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	10290409	10290410	chr5:10290410:G:C	rs10038129	G	C	g	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	10290421	10290422	chr5:10290422:G:A	rs10038132	G	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	10504192	10504193	chr5:10504193:C:T	rs571864014	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	10507726	10507727	chr5:10507727:C:T	rs80256610	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	10606206	10606207	chr5:10606207:T:C	rs12187105	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	10664465	10664466	chr5:10664466:A:G	rs12523335	A	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	10664465	10664466	chr5:10664466:A:T	chr5:10664466:A:T	A	T	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	10707792	10707793	chr5:10707793:A:G	rs62337596	A	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	10734336	10734337	chr5:10734337:G:C	rs572683423	G	C	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	10876274	10876275	chr5:10876275:C:G	rs145237253	C	G	C	Hoxa9_MA0594.1	2	1	+	8.232403979495325	1.7085039917469849	CTCATTAATCA
chr5	10896778	10896779	chr5:10896779:A:G	rs4995976	A	G	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	10982863	10982864	chr5:10982864:A:G	rs7733042	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	11383771	11383772	chr5:11383772:A:C	rs2548403	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	11427785	11427786	chr5:11427786:T:C	rs31893	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	11427793	11427794	chr5:11427794:A:G	rs31894	A	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	11448010	11448011	chr5:11448011:T:C	rs31963	T	C	T	Hoxa9_MA0594.1	4	1	+	8.169295346121482	1.2605405668062617	CCCCTAAATCA
chr5	12109387	12109388	chr5:12109388:A:G	rs10045344	A	G	A	Hoxa9_MA0594.1	3	1	+	9.196147443905666	6.214351016496806	GAAATAAATCA
chr5	12662797	12662798	chr5:12662798:T:A	rs6868308	T	A	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	12662814	12662815	chr5:12662815:G:A	rs6887427	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	13108407	13108408	chr5:13108408:T:G	rs4702918	T	G	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	13250118	13250119	chr5:13250119:G:A	rs771112502	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	13326363	13326364	chr5:13326364:T:A	rs11742890	T	A	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	13750865	13750866	chr5:13750866:T:C	rs6889428	T	C	T	Hoxa9_MA0594.1	10	1	-	8.581246790906087	1.9444738051533186	CTCATAAATTA
chr5	13771257	13771258	chr5:13771258:G:T	rs113636240	G	T	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	14025742	14025743	chr5:14025743:G:A	rs10462718	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	14174109	14174110	chr5:14174110:G:C	rs26117	G	C	G	Hoxa9_MA0594.1	9	1	-	9.552544425392455	2.754213463691607	TCCATAAATCA
chr5	14178957	14178958	chr5:14178958:G:A	chr5:14178958:G:A	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	14186097	14186098	chr5:14186098:A:G	rs59539941	A	G	A	Hoxa9_MA0594.1	4	1	-	8.11177607157458	1.2030212922593584	CCCATGAATCT
chr5	14457965	14457966	chr5:14457966:G:T	rs16903523	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	14478491	14478492	chr5:14478492:G:A	rs6882373	G	A	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	14688307	14688308	chr5:14688308:G:A	rs250438	G	A	G	Hoxa9_MA0594.1	5	1	-	8.038914744234518	5.61877573690483	GCCCTCAATCA
chr5	14993348	14993349	chr5:14993349:A:G	rs147014922	A	G	a	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	15286434	15286435	chr5:15286435:T:A	rs57296905	T	A	T	Hoxa9_MA0594.1	10	1	-	8.074332694835956	6.6047428076064225	CCCATCAAACA
chr5	15559807	15559808	chr5:15559808:G:A	rs9312893	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr5	16034498	16034499	chr5:16034499:T:A	rs6892600	T	A	A	Hoxa9_MA0594.1	10	1	+	7.64612345596233	9.115713343191864	CCCGTAAATCT
chr5	16279065	16279066	chr5:16279066:C:A	rs986768	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	16547536	16547537	chr5:16547537:G:A	rs12187057	G	A	A	Hoxa9_MA0594.1	1	1	-	9.895832972794834	9.00428321168444	GCCATAAATTA
chr5	16565128	16565129	chr5:16565129:G:A	rs570829725	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	16626607	16626608	chr5:16626608:G:T	rs10520842	G	T	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	16810520	16810521	chr5:16810521:A:G	rs57125370	A	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	16964962	16964963	chr5:16964963:A:G	rs74699029	A	G	A	Hoxa9_MA0594.1	3	1	+	9.472796552016483	6.491000124607625	CCCATAAATTA
chr5	16964988	16964989	chr5:16964989:C:T	rs7734779	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	17097022	17097023	chr5:17097023:C:T	rs77472436	C	T	T	Hoxa9_MA0594.1	1	1	+	9.064232820513286	8.17268305940289	ACAATAAATCT
chr5	17148126	17148127	chr5:17148127:C:T	rs587977	C	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	17157895	17157896	chr5:17157896:T:C	rs75302300	T	C	T	Hoxa9_MA0594.1	6	1	+	8.787894669125532	8.391575681703616	GTCATATATCA
chr5	17231375	17231376	chr5:17231376:T:C	rs298525	T	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr5	17360344	17360345	chr5:17360345:C:T	rs6554998	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	17378154	17378155	chr5:17378155:T:C	rs114822597	T	C	T	Hoxa9_MA0594.1	10	1	-	10.1771786874735	3.540405701720731	CCTATAAATCA
chr5	18601668	18601669	chr5:18601669:C:T	rs77931308	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	18921735	18921736	chr5:18921736:G:A	rs11951193	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	19489216	19489217	chr5:19489217:A:T	rs28640200	A	T	A	Hoxa9_MA0594.1	2	1	+	8.484451549460127	7.685658437246607	GTAATCAATCT
chr5	19518351	19518352	chr5:19518352:T:C	rs114533165	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	19776899	19776900	chr5:19776900:T:C	rs55700215	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	20604948	20604949	chr5:20604949:A:T	rs1008050	A	T	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	20649136	20649137	chr5:20649137:C:T	rs72749143	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	20711884	20711885	chr5:20711885:A:G	rs59636641	A	G	-	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	20780858	20780859	chr5:20780859:C:T	rs112593978	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	20990284	20990285	chr5:20990285:C:G	rs7714560	C	G	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	21025054	21025055	chr5:21025055:A:T	rs114773525	A	T	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	21238890	21238891	chr5:21238891:A:G	rs6898263	A	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	21417049	21417050	chr5:21417050:G:A	rs11957493	G	A	.	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	21575453	21575454	chr5:21575454:G:A	rs7725903	G	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	22322917	22322918	chr5:22322918:G:A	rs33999452	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	22470121	22470122	chr5:22470122:T:C	rs1424477	T	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	22508804	22508805	chr5:22508805:G:A	rs142398884	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	22591066	22591067	chr5:22591067:G:C	rs199139	G	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	22596643	22596644	chr5:22596644:C:T	rs115007728	C	T	C	Hoxa9_MA0594.1	0	1	-	8.88286440866876	8.01767889594621	GCAATGAATCA
chr5	22669664	22669665	chr5:22669665:A:G	rs77813178	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	22703026	22703027	chr5:22703027:T:C	rs13161449	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	24727140	24727141	chr5:24727141:G:A	rs111428548	G	A	G	Hoxa9_MA0594.1	0	1	-	8.614832151347091	6.069866806138823	CTAATAAATCT
chr5	24864681	24864682	chr5:24864682:A:C	rs10737969	A	C	A	Hoxa9_MA0594.1	6	1	+	10.422554777021706	7.185134028456644	CCAATCAATCA
chr5	25191130	25191131	chr5:25191131:T:A	rs72755889	T	A	T	Hoxa9_MA0594.1	4	1	+	9.929418333235837	3.0206635539206164	GCAATAAATCT
chr5	26572245	26572246	chr5:26572246:T:A	rs10068500	T	A	A	Hoxa9_MA0594.1	6	1	-	8.843479834418904	6.002378073275757	ATTATAAATCA
chr5	26613142	26613143	chr5:26613143:T:C	rs62343654	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	26700998	26700999	chr5:26700999:T:A	rs143606805	T	A	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	26942649	26942650	chr5:26942650:G:A	rs1007586	G	A	A	Hoxa9_MA0594.1	2	1	-	8.247667105749517	6.327336022622293	ATCATGAATCA
chr5	27021479	27021480	chr5:27021480:T:C	chr5:27021480:T:C	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	27463165	27463166	chr5:27463166:G:A	rs2329551	G	A	g	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	27472947	27472948	chr5:27472948:G:A	chr5:27472948:G:A	G	A	G	Hoxa9_MA0594.1	9	1	-	8.689816197693718	6.065102979109478	CTCATGAATCA
chr5	27573962	27573963	chr5:27573963:C:T	rs13169053	C	T	c	Hoxa9_MA0594.1	0	1	+	8.773111023127315	6.228145677919046	CAAATAAATCA
chr5	27820064	27820065	chr5:27820065:C:T	rs7710218	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	27864624	27864625	chr5:27864625:C:T	rs72742847	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	28045454	28045455	chr5:28045455:G:A	rs11954919	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr5	28109252	28109253	chr5:28109253:G:A	rs58609842	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	28126864	28126865	chr5:28126865:T:C	rs72746252	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	29247736	29247737	chr5:29247737:G:C	rs11959636	G	C	.	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	29295844	29295845	chr5:29295845:A:C	rs72745419	A	C	a	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	29327803	29327804	chr5:29327804:G:A	rs2195316	G	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	29779510	29779511	chr5:29779511:C:T	rs12520342	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	29811874	29811875	chr5:29811875:A:C	rs12517227	A	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	30592999	30593000	chr5:30593000:G:A	rs6872269	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	30802326	30802327	chr5:30802327:T:C	rs12514119	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	30914563	30914564	chr5:30914564:C:T	rs35681824	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	30914569	30914570	chr5:30914570:G:A	rs60303617	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	31027952	31027953	chr5:31027953:C:A	rs559922255	C	A	C	Hoxa9_MA0594.1	1	1	+	9.050786138279621	6.847925361719915	GCCATAAAACA
chr5	31442250	31442251	chr5:31442251:T:C	rs957353002	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	31485558	31485559	chr5:31485559:C:A	rs74709927	C	A	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	31809537	31809538	chr5:31809538:C:A	rs10940969	C	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	32027777	32027778	chr5:32027778:C:A	rs60852811	C	A	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	32045112	32045113	chr5:32045113:A:C	rs13156866	A	C	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	32391158	32391159	chr5:32391159:T:G	chr5:32391159:T:G	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	32499982	32499983	chr5:32499983:C:G	rs2594825	C	G	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	32833496	32833497	chr5:32833497:C:T	rs12655026	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	32844746	32844747	chr5:32844747:A:G	rs1173704	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	33321140	33321141	chr5:33321141:A:G	rs17638186	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	33444470	33444471	chr5:33444471:T:C	rs10941055	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	33528719	33528720	chr5:33528720:G:A	rs72737382	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	33663236	33663237	chr5:33663237:C:T	rs75768007	C	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	33968396	33968397	chr5:33968397:C:A	rs73761626	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	34436986	34436987	chr5:34436987:C:G	rs10043812	C	G	g	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	34589780	34589781	chr5:34589781:C:G	rs7735949	C	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	34865422	34865423	chr5:34865423:A:G	rs13167483	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	35067879	35067880	chr5:35067880:C:G	rs115229432	C	G	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	35096467	35096468	chr5:35096468:A:C	rs190290133	A	C	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	35096471	35096472	chr5:35096472:G:A	rs552757619	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	35456680	35456681	chr5:35456681:T:C	rs77850698	T	C	T	Hoxa9_MA0594.1	7	1	-	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr5	35458428	35458429	chr5:35458429:C:T	rs1605684	C	T	c	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	35805022	35805023	chr5:35805023:T:C	rs991571	T	C	T	Hoxa9_MA0594.1	3	1	-	8.476262915039317	5.494466487630458	CCCATCAATAA
chr5	35857601	35857602	chr5:35857602:A:G	rs11567694	A	G	A	Hoxa9_MA0594.1	10	1	-	8.425059106811483	7.431493751404856	CACATAAATCT
chr5	35881788	35881789	chr5:35881789:G:T	rs143473524	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	35971084	35971085	chr5:35971085:G:A	rs1348705	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	35979442	35979443	chr5:35979443:G:T	rs113590482	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	36056476	36056477	chr5:36056477:G:C	rs1287263	G	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	36071418	36071419	chr5:36071419:G:A	rs267781	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	36157496	36157497	chr5:36157497:C:T	rs464202	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	36157498	36157499	chr5:36157499:A:G	rs464812	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	36371612	36371613	chr5:36371613:C:T	rs6451279	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	36371619	36371620	chr5:36371620:G:A	rs7729385	G	A	A	Hoxa9_MA0594.1	1	1	+	9.03874180895376	9.894648994041017	CGCATAAATCA
chr5	36445355	36445356	chr5:36445356:A:C	rs1104824	A	C	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	36630837	36630838	chr5:36630838:G:A	rs1170148314	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	36682638	36682639	chr5:36682639:C:T	rs7726798	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr5	36780080	36780081	chr5:36780081:A:G	rs7709776	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	37086296	37086297	chr5:37086297:T:C	rs186482266	T	C	T	Hoxa9_MA0594.1	3	1	-	9.623761664808185	6.641965237399327	CCTATCAATCA
chr5	37370695	37370696	chr5:37370696:A:T	rs189657877	A	T	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	37370706	37370707	chr5:37370707:C:T	rs116689196	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	37616451	37616452	chr5:37616452:C:G	rs11950295	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	37765954	37765955	chr5:37765955:T:C	rs4869547	T	C	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	37984970	37984971	chr5:37984971:A:G	rs74818966	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	38018144	38018145	chr5:38018145:C:T	rs16903834	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	38052115	38052116	chr5:38052116:C:T	rs57034263	C	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	38052116	38052117	chr5:38052117:A:G	rs58915619	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	38060307	38060308	chr5:38060308:T:A	rs2048218	T	A	T	Hoxa9_MA0594.1	10	1	-	7.605819354503911	6.136229467274378	GTCATCAAACA
chr5	38378173	38378174	chr5:38378174:G:C	rs2921220	G	C	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	38387326	38387327	chr5:38387327:C:G	rs2246549	C	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	38463695	38463696	chr5:38463696:C:T	rs141162776	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	38807872	38807873	chr5:38807873:A:G	rs62353356	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	38846036	38846037	chr5:38846037:C:T	rs2292017	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	39143345	39143346	chr5:39143346:T:C	rs10061639	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	39164720	39164721	chr5:39164721:A:G	rs17380263	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr5	39175326	39175327	chr5:39175327:G:A	rs115477990	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	39175368	39175369	chr5:39175369:A:T	rs114265891	A	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	39258289	39258290	chr5:39258290:G:A	rs113741668	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	39266417	39266418	chr5:39266418:G:A	rs16868511	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	39433246	39433247	chr5:39433247:T:G	rs190259482	T	G	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	39502652	39502653	chr5:39502653:G:A	rs4957476	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	39639884	39639885	chr5:39639885:C:A	rs144138239	C	A	C	Hoxa9_MA0594.1	9	1	+	9.181612572863987	6.113782739967895	ACTATCAATCA
chr5	39700849	39700850	chr5:39700850:A:T	rs139287154	A	T	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	39783950	39783951	chr5:39783951:T:G	rs62358178	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	40220096	40220097	chr5:40220097:A:T	rs72746147	A	T	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	40258414	40258415	chr5:40258415:C:T	rs2371680	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	40280762	40280763	chr5:40280763:G:T	rs182161404	G	T	g	Hoxa9_MA0594.1	2	1	-	11.628996430268678	10.507458459354975	GTCATAAATCA
chr5	40333167	40333168	chr5:40333168:G:A	rs762319911	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	40428698	40428699	chr5:40428699:A:G	rs10512738	A	G	A	Hoxa9_MA0594.1	3	1	+	12.520546191379072	9.538749763970214	GCCATAAATCA
chr5	40428708	40428709	chr5:40428709:G:A	rs10042027	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr5	40689893	40689894	chr5:40689894:A:G	rs10060234	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	41161386	41161387	chr5:41161387:A:T	rs3805716	A	T	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	41291349	41291350	chr5:41291350:A:G	rs75525146	A	G	A	Hoxa9_MA0594.1	7	1	+	8.899299335817666	1.996365662114747	GCCATCAATAA
chr5	41336725	41336726	chr5:41336726:T:C	rs765176	T	C	C	Hoxa9_MA0594.1	7	1	-	9.764268392154055	2.861334718451134	GACATCAATCA
chr5	41600888	41600889	chr5:41600889:C:T	rs75477097	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	41873628	41873629	chr5:41873629:G:A	rs7728482	G	A	A	Hoxa9_MA0594.1	0	1	+	8.848095527589834	7.982910014867283	GACATAAATCT
chr5	43664728	43664729	chr5:43664729:C:A	rs116565385	C	A	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	43680564	43680565	chr5:43680565:A:G	rs6893250	A	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	43730805	43730806	chr5:43730806:G:A	rs11737988	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	44808061	44808062	chr5:44808062:T:C	rs3761649	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	45029764	45029765	chr5:45029765:C:G	rs7716101	C	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	45926990	45926991	chr5:45926991:G:A	rs531330167	G	A	.	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	51047528	51047529	chr5:51047529:T:G	rs75390317	T	G	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	51188560	51188561	chr5:51188561:T:C	rs6881635	T	C	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	51382315	51382316	chr5:51382316:G:A	rs36216896	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	51382335	51382336	chr5:51382336:C:T	rs36216895	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	51396766	51396767	chr5:51396767:T:A	rs79435602	T	A	T	Hoxa9_MA0594.1	7	1	-	9.080937505299248	2.1780038315963273	CCCATCAATCC
chr5	51476669	51476670	chr5:51476670:G:A	rs77220925	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	51934491	51934492	chr5:51934492:C:A	rs4865524	C	A	C	Hoxa9_MA0594.1	0	1	-	7.541247136946303	4.573245370959683	GCCATGAATCC
chr5	52268048	52268049	chr5:52268049:G:A	rs10079174	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	52306088	52306089	chr5:52306089:C:T	rs2405843	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	52608933	52608934	chr5:52608934:A:G	rs830906	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	52690666	52690667	chr5:52690667:T:C	rs77317050	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	52690686	52690687	chr5:52690687:A:G	rs78896171	A	G	A	Hoxa9_MA0594.1	3	1	+	8.707588800243967	5.725792372835108	CCTATAAATCT
chr5	52690688	52690689	chr5:52690689:A:G	rs11739806	A	G	A	Hoxa9_MA0594.1	5	1	+	8.707588800243967	6.191444988447357	CCTATAAATCT
chr5	52695768	52695769	chr5:52695769:A:C	rs164611	A	C	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr5	52705920	52705921	chr5:52705921:A:G	rs72752532	A	G	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	52786783	52786784	chr5:52786784:A:T	rs10471813	A	T	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	52801348	52801349	chr5:52801349:A:G	rs2059202	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	52826908	52826909	chr5:52826909:A:T	rs1587398	A	T	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	52988344	52988345	chr5:52988345:C:G	rs26679	C	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	53917763	53917764	chr5:53917764:C:A	rs76319586	C	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	53917787	53917788	chr5:53917788:T:G	rs36026821	T	G	T	Hoxa9_MA0594.1	4	1	+	7.811441225681866	0.9026864463666464	CTCATCTATCA
chr5	53997367	53997368	chr5:53997368:T:C	rs6884936	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	54090940	54090941	chr5:54090941:G:T	chr5:54090941:G:T	G	T	G	Hoxa9_MA0594.1	9	1	-	9.050786138279621	5.982956305383529	GCCATAAAACA
chr5	54176774	54176775	chr5:54176775:T:C	rs997577450	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	54523104	54523105	chr5:54523105:A:T	rs7726479	A	T	A	Hoxa9_MA0594.1	7	1	+	8.189387744188851	1.2864540704859315	CTCATCAATCC
chr5	54578180	54578181	chr5:54578181:T:C	rs72750096	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	54596515	54596516	chr5:54596516:A:G	rs12652494	A	G	A	Hoxa9_MA0594.1	5	1	+	7.738551051121958	5.2224072393253484	CCAATACATCA
chr5	54981826	54981827	chr5:54981827:G:A	rs11745146	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	55160905	55160906	chr5:55160906:C:G	rs2270910	C	G	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	55302859	55302860	chr5:55302860:T:C	rs2606585	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	55634788	55634789	chr5:55634789:T:C	rs73119746	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	55993190	55993191	chr5:55993191:C:T	rs974846480	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	56038097	56038098	chr5:56038098:G:A	rs10045084	G	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	56099514	56099515	chr5:56099515:T:C	rs1978675	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	56099536	56099537	chr5:56099537:T:A	rs113276591	T	A	T	Hoxa9_MA0594.1	8	1	+	9.980405685077507	6.510645631978054	ACAATCAATCA
chr5	56278603	56278604	chr5:56278604:C:T	rs115922978	C	T	c	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	56314133	56314134	chr5:56314134:A:G	rs67896921	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	56566066	56566067	chr5:56566067:G:A	rs9687846	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	56615827	56615828	chr5:56615828:T:C	rs1050802044	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	56615831	56615832	chr5:56615832:C:G	rs10471987	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	56637974	56637975	chr5:56637975:T:C	rs1320494920	T	C	T	Hoxa9_MA0594.1	4	1	+	10.046798085586536	3.1380433062713164	GCTATCAATCA
chr5	56733889	56733890	chr5:56733890:C:T	rs7734920	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	56733898	56733899	chr5:56733899:A:G	rs146649106	A	G	A	Hoxa9_MA0594.1	7	1	+	7.632183602891756	0.7292499291888359	ACCATCAAACA
chr5	57042710	57042711	chr5:57042711:G:T	rs10461619	G	T	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	57435649	57435650	chr5:57435650:G:A	rs559898049	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	57687645	57687646	chr5:57687646:C:A	rs229959	C	A	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	57712087	57712088	chr5:57712088:C:T	rs10805498	C	T	C	Hoxa9_MA0594.1	1	1	+	8.497369115614307	7.605819354503911	GCCATCAAACA
chr5	57736720	57736721	chr5:57736721:A:G	rs115762577	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	57776732	57776733	chr5:57776733:C:T	rs10447121	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	57803945	57803946	chr5:57803946:A:C	rs854046	A	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	57840232	57840233	chr5:57840233:G:A	rs755406075	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	57880241	57880242	chr5:57880242:C:G	rs10072292	C	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	57902210	57902211	chr5:57902211:C:A	rs73757488	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	57956737	57956738	chr5:57956738:A:T	rs75645919	A	T	A	Hoxa9_MA0594.1	8	1	-	8.260841894848062	4.79108184174861	ACCATCTATCA
chr5	58019847	58019848	chr5:58019848:T:G	chr5:58019848:T:G	T	G	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	58070933	58070934	chr5:58070934:G:A	rs12659235	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	58087371	58087372	chr5:58087372:A:T	rs79362370	A	T	A	Hoxa9_MA0594.1	6	1	-	8.364858248347181	11.205960009490326	CTCATATATCA
chr5	58087372	58087373	chr5:58087373:T:G	rs10461440	T	G	T	Hoxa9_MA0594.1	5	1	-	8.364858248347181	7.811441225681866	CTCATATATCA
chr5	58120671	58120672	chr5:58120672:G:A	rs7704854	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	58182490	58182491	chr5:58182491:A:G	rs2964185	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	58235539	58235540	chr5:58235540:A:G	rs73093475	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	58235580	58235581	chr5:58235581:G:A	rs73093479	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	58314871	58314872	chr5:58314872:A:G	chr5:58314872:A:G	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	58456756	58456757	chr5:58456757:T:C	rs77452318	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	58456765	58456766	chr5:58456766:C:G	rs702724	C	G	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	58599266	58599267	chr5:58599267:A:G	rs12516344	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	58746168	58746169	chr5:58746169:T:G	rs11953345	T	G	T	Hoxa9_MA0594.1	6	1	-	7.747238652244652	4.50981790367959	ATCATCAATCC
chr5	58794039	58794040	chr5:58794040:C:T	rs35734784	C	T	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	58803619	58803620	chr5:58803620:G:T	rs2548249	G	T	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	58946492	58946493	chr5:58946493:C:A	rs468058	C	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	58999186	58999187	chr5:58999187:A:G	rs7714708	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	59206515	59206516	chr5:59206516:G:C	rs13155290	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	59355368	59355369	chr5:59355369:T:C	rs62358047	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	59544095	59544096	chr5:59544096:C:T	rs73761533	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	59544099	59544100	chr5:59544100:C:A	rs73099614	C	A	C	Hoxa9_MA0594.1	1	1	+	9.19220543602036	6.989344659460656	ACCATAAATCC
chr5	59544100	59544101	chr5:59544101:C:T	rs183708075	C	T	C	Hoxa9_MA0594.1	2	1	+	9.19220543602036	7.271874352893139	ACCATAAATCC
chr5	59563560	59563561	chr5:59563561:T:C	chr5:59563561:T:C	T	C	T	Hoxa9_MA0594.1	5	1	-	7.565650261440604	5.049506449643995	GCCATAAAGCA
chr5	59615256	59615257	chr5:59615257:C:T	rs72769743	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	60028521	60028522	chr5:60028522:A:C	rs12054971	A	C	A	Hoxa9_MA0594.1	2	1	+	10.97597179968702	12.097509770600722	CCAATAAATCA
chr5	60354837	60354838	chr5:60354838:C:T	rs16877923	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	60487699	60487700	chr5:60487700:T:G	rs1321729371	T	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	60487749	60487750	chr5:60487750:A:G	rs79563697	A	G	A	Hoxa9_MA0594.1	4	1	-	10.004402379582464	3.0956476002672426	GCCATGAATCA
chr5	60634336	60634337	chr5:60634337:C:A	rs79524768	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	61400597	61400598	chr5:61400598:C:T	rs10939901	C	T	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	61504443	61504444	chr5:61504444:A:G	rs79146029	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	62002478	62002479	chr5:62002479:G:C	rs2166371	G	C	C	Hoxa9_MA0594.1	3	1	+	7.994175372278161	7.047757375207779	CCAGTAAATCA
chr5	62042634	62042635	chr5:62042635:G:A	rs1972651	G	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	62163198	62163199	chr5:62163199:G:A	rs2910463	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	62184461	62184462	chr5:62184462:T:C	rs3909436	T	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	62249806	62249807	chr5:62249807:C:T	rs10074813	C	T	c	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	62249843	62249844	chr5:62249844:C:G	rs10074863	C	G	c	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	62405887	62405888	chr5:62405888:T:C	rs152209	T	C	c	Hoxa9_MA0594.1	8	1	+	7.801541603022757	0.9282535529228686	GACATGAATCA
chr5	62412301	62412302	chr5:62412302:T:G	rs78522246	T	G	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	62412318	62412319	chr5:62412319:C:G	rs115271691	C	G	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	62707732	62707733	chr5:62707733:T:C	rs37763	T	C	T	Hoxa9_MA0594.1	2	1	+	9.708665347141455	11.628996430268678	GTTATAAATCA
chr5	62816062	62816063	chr5:62816063:C:T	rs9291764	C	T	C	Hoxa9_MA0594.1	5	1	+	8.107577641616745	5.687438634287056	TTCATCAATCA
chr5	62969526	62969527	chr5:62969527:A:G	rs13176735	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	63952580	63952581	chr5:63952581:A:G	rs72767929	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	64594114	64594115	chr5:64594115:C:T	rs76702682	C	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	64617291	64617292	chr5:64617292:C:T	rs2216706	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	64630595	64630596	chr5:64630596:C:T	rs12153793	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	64688558	64688559	chr5:64688559:T:A	rs6869987	T	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	65262283	65262284	chr5:65262284:T:C	rs3776042	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	65790570	65790571	chr5:65790571:A:G	rs143808607	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	65861937	65861938	chr5:65861938:A:G	rs77591999	A	G	G	Hoxa9_MA0594.1	6	1	+	7.643262731242535	0.8256619454868772	GTCATGAATCT
chr5	66146251	66146252	chr5:66146252:A:G	rs139800256	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	66184151	66184152	chr5:66184152:A:G	rs77762257	A	G	A	Hoxa9_MA0594.1	7	1	+	7.656437520341079	0.753503846638159	GCCATCTATCT
chr5	66368160	66368161	chr5:66368161:G:A	rs62359646	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	66459905	66459906	chr5:66459906:A:G	rs10069486	A	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	66802730	66802731	chr5:66802731:C:T	rs33725	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr5	66879595	66879596	chr5:66879596:T:C	rs27989	T	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	66889322	66889323	chr5:66889323:T:C	rs39862	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	67031351	67031352	chr5:67031352:A:G	rs27204	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	67290251	67290252	chr5:67290252:C:T	rs143424818	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	67897691	67897692	chr5:67897692:C:G	rs989235	C	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	67911029	67911030	chr5:67911030:A:G	rs6862134	A	G	A	Hoxa9_MA0594.1	4	1	-	8.425059106811483	1.5163043274962626	CACATAAATCT
chr5	68017148	68017149	chr5:68017149:C:T	rs282296	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	68170948	68170949	chr5:68170949:C:A	rs116637346	C	A	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	68260797	68260798	chr5:68260798:A:G	rs116339088	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	68658422	68658423	chr5:68658423:C:G	rs3857277	C	G	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	68835195	68835196	chr5:68835196:G:C	rs2972427	G	C	G	Hoxa9_MA0594.1	9	1	-	9.980405685077507	3.182074723376659	ACAATCAATCA
chr5	68925081	68925082	chr5:68925082:A:G	rs11743274	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	71911007	71911008	chr5:71911008:G:T	rs12152924	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	72007480	72007481	chr5:72007481:G:A	rs1010376	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	72057657	72057658	chr5:72057658:C:T	rs1692395	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	72110842	72110843	chr5:72110843:T:C	rs12655953	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	72145761	72145762	chr5:72145762:T:C	rs4569852	T	C	t	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	72152759	72152760	chr5:72152760:T:C	rs6879689	T	C	T	Hoxa9_MA0594.1	4	1	+	9.285628926363104	2.376874147047883	CTTATAAATCA
chr5	72157020	72157021	chr5:72157021:T:A	rs62363205	T	A	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	72388057	72388058	chr5:72388058:G:A	rs9293289	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	72542098	72542099	chr5:72542099:C:G	rs16899497	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	72542100	72542101	chr5:72542101:T:C	rs62360613	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	72624793	72624794	chr5:72624794:C:T	rs142903919	C	T	C	Hoxa9_MA0594.1	5	1	+	9.341231971375704	6.921092964046014	CACATCAATCA
chr5	72692253	72692254	chr5:72692254:G:C	rs111671976	G	C	G	Hoxa9_MA0594.1	9	1	-	8.93585297782921	2.1375220161283632	GCAATAAATCC
chr5	72925877	72925878	chr5:72925878:G:A	rs198216	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	72955133	72955134	chr5:72955134:T:C	rs11746344	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	73197438	73197439	chr5:73197439:A:G	rs7702108	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	73282502	73282503	chr5:73282503:T:G	rs73762027	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	73283215	73283216	chr5:73283216:T:C	rs4235676	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	73388475	73388476	chr5:73388476:A:G	rs4346754	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	73388483	73388484	chr5:73388484:A:T	rs12653399	A	T	A	Hoxa9_MA0594.1	2	1	+	10.507458459354975	9.708665347141455	GTAATAAATCA
chr5	73624061	73624062	chr5:73624062:G:A	rs2112161	G	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	73819175	73819176	chr5:73819176:C:T	rs7705309	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	73820796	73820797	chr5:73820797:C:T	rs75174543	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	73839168	73839169	chr5:73839169:A:G	rs2973575	A	G	A	Hoxa9_MA0594.1	3	1	+	8.294678504924521	5.312882077515661	GACATCAATCT
chr5	73860305	73860306	chr5:73860306:G:T	rs142819628	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	73975492	73975493	chr5:73975493:C:G	rs453884	C	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	73998188	73998189	chr5:73998189:G:A	rs76918831	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	74122003	74122004	chr5:74122004:T:C	rs6453041	T	C	T	Hoxa9_MA0594.1	3	1	-	8.62774971750127	5.645953290092412	CCCATAAAACA
chr5	74122842	74122843	chr5:74122843:G:A	rs182309	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	74165034	74165035	chr5:74165035:G:A	rs78719417	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	74213670	74213671	chr5:74213671:G:A	rs12519078	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	74268759	74268760	chr5:74268760:C:T	rs2126040	C	T	T	Hoxa9_MA0594.1	0	1	-	7.838158659038301	6.97297314631575	GTCATCCATCA
chr5	74273437	74273438	chr5:74273438:T:C	rs569120	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	74530813	74530814	chr5:74530814:G:A	rs6882686	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	74652153	74652154	chr5:74652154:A:T	rs6896412	A	T	T	Hoxa9_MA0594.1	0	1	+	8.58753084576043	6.4847145924963625	ACCATAAATAA
chr5	74864629	74864630	chr5:74864630:A:G	rs16872364	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	74925479	74925480	chr5:74925480:T:G	rs79022856	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	74925488	74925489	chr5:74925489:G:T	rs76378420	G	T	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	75009819	75009820	chr5:75009820:G:A	rs62369162	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	75072293	75072294	chr5:75072294:C:A	rs78334671	C	A	C	Hoxa9_MA0594.1	9	1	+	8.397354331692144	5.329524498796053	GATATAAATCA
chr5	75405658	75405659	chr5:75405659:T:C	rs114200677	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	75673589	75673590	chr5:75673590:G:A	rs10056022	G	A	g	Hoxa9_MA0594.1	0	1	-	7.66103487567689	5.1160695304686215	CCTATGAATCA
chr5	75677579	75677580	chr5:75677580:C:A	rs16872760	C	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	75707230	75707231	chr5:75707231:A:G	rs3797580	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	76086271	76086272	chr5:76086272:C:T	rs115196313	C	T	c	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	76405133	76405134	chr5:76405134:G:A	rs114379804	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	76684541	76684542	chr5:76684542:A:T	rs7709577	A	T	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	76690140	76690141	chr5:76690141:G:A	rs11951337	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	76938353	76938354	chr5:76938354:A:C	rs1715757	A	C	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	77067450	77067451	chr5:77067451:A:G	rs72765119	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	77101466	77101467	chr5:77101467:C:A	rs149817376	C	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	77144807	77144808	chr5:77144808:C:G	rs11960007	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	77351771	77351772	chr5:77351772:G:A	rs4704412	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	77452547	77452548	chr5:77452548:C:G	rs335612	C	G	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	77774655	77774656	chr5:77774656:G:A	rs460302	G	A	G	Hoxa9_MA0594.1	2	1	-	9.764268392154055	7.84393730902683	GACATCAATCA
chr5	77774658	77774659	chr5:77774659:T:C	rs466754	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	77863571	77863572	chr5:77863572:G:A	rs10514124	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	78463538	78463539	chr5:78463539:A:G	rs10063742	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	78782005	78782006	chr5:78782006:A:G	rs7721866	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	78858553	78858554	chr5:78858554:T:C	rs74681910	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	79329765	79329766	chr5:79329766:A:T	rs13177425	A	T	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	79803174	79803175	chr5:79803175:C:T	rs259067	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	79898845	79898846	chr5:79898846:G:A	rs4235715	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	80066726	80066727	chr5:80066727:G:A	rs443095	G	A	G	Hoxa9_MA0594.1	1	1	-	8.93585297782921	8.044303216718815	GCAATAAATCC
chr5	80076583	80076584	chr5:80076584:C:T	rs384941	C	T	-	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	80094175	80094176	chr5:80094176:T:C	chr5:80094176:T:C	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	80102403	80102404	chr5:80102404:C:A	rs2434291	C	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	80104954	80104955	chr5:80104955:C:T	rs2015459	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	80126003	80126004	chr5:80126004:T:G	rs147953066	T	G	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	80142881	80142882	chr5:80142882:A:C	rs4703803	A	C	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	80159968	80159969	chr5:80159969:A:G	rs73772266	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	80220668	80220669	chr5:80220669:C:G	rs17200389	C	G	G	Hoxa9_MA0594.1	1	1	-	8.908361207066799	11.967129168713758	GGCATCAATCA
chr5	80638207	80638208	chr5:80638208:T:C	rs1643660	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	80678750	80678751	chr5:80678751:G:A	rs836808	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	80924939	80924940	chr5:80924940:T:C	rs6871067	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr5	81172082	81172083	chr5:81172083:G:C	rs6881941	G	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	81423359	81423360	chr5:81423360:A:G	rs10063111	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	81565957	81565958	chr5:81565958:G:C	rs13182474	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	82225726	82225727	chr5:82225727:T:C	rs923078987	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	82225744	82225745	chr5:82225745:T:C	rs994117724	T	C	T	Hoxa9_MA0594.1	3	1	-	8.729708420148697	5.747911992739839	GCCATCCATCA
chr5	82358819	82358820	chr5:82358820:C:T	rs10041360	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	82414228	82414229	chr5:82414229:G:T	rs224948	G	T	G	Hoxa9_MA0594.1	9	1	-	9.139216866859913	6.071387033963821	ACCATGAATCA
chr5	82426018	82426019	chr5:82426019:A:G	rs17790400	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	82640398	82640399	chr5:82640399:G:C	rs4703544	G	C	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	83134712	83134713	chr5:83134713:G:A	rs12517930	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	83167883	83167884	chr5:83167884:C:T	rs67683443	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	83516622	83516623	chr5:83516623:A:G	rs308359	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	83890032	83890033	chr5:83890033:A:T	rs73769670	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	83974144	83974145	chr5:83974145:G:A	rs12513999	G	A	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	84131231	84131232	chr5:84131232:C:T	rs164059	C	T	C	Hoxa9_MA0594.1	0	1	+	8.154171777578652	5.609206432370383	CCTATCAATCT
chr5	84636500	84636501	chr5:84636501:T:A	rs12153221	T	A	A	Hoxa9_MA0594.1	10	1	-	9.256408009457576	7.786818122228043	CCCATATATCA
chr5	85139990	85139991	chr5:85139991:A:G	rs10074510	A	G	A	Hoxa9_MA0594.1	4	1	-	7.801541603022757	0.8927868237075374	GACATGAATCA
chr5	85292824	85292825	chr5:85292825:A:G	rs1174550133	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	85441438	85441439	chr5:85441439:C:T	rs62358956	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	85823662	85823663	chr5:85823663:G:A	rs12659004	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	86093535	86093536	chr5:86093536:A:G	rs9293456	A	G	A	Hoxa9_MA0594.1	4	1	-	8.843479834418904	1.934725055103683	ATTATAAATCA
chr5	86171021	86171022	chr5:86171022:G:A	rs10805829	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	87048440	87048441	chr5:87048441:C:G	rs4289590	C	G	c	Hoxa9_MA0594.1	2	1	+	7.118210716167953	0.5943107284196116	CCCATGAATCC
chr5	87150585	87150586	chr5:87150586:C:T	rs2624218	C	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	87267604	87267605	chr5:87267605:C:G	rs1005000306	C	G	C	Hoxa9_MA0594.1	9	1	+	8.074332694835956	1.2760017331351092	CCCATCAAACA
chr5	87267622	87267623	chr5:87267623:G:A	rs561231534	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	87340165	87340166	chr5:87340166:T:C	rs7706214	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	88485350	88485351	chr5:88485351:C:T	rs10044618	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr5	88654471	88654472	chr5:88654472:G:A	rs26582	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	88785767	88785768	chr5:88785768:G:T	rs201838416	G	T	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	89418731	89418732	chr5:89418732:A:T	rs10454907	A	T	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	89884247	89884248	chr5:89884248:G:T	rs2112271	G	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	90369152	90369153	chr5:90369153:G:A	rs2935535	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	90747429	90747430	chr5:90747430:C:T	rs2438367	C	T	C	Hoxa9_MA0594.1	0	1	-	10.507458459354975	9.642272946632424	GTAATAAATCA
chr5	90915830	90915831	chr5:90915831:C:G	rs10078568	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	91052969	91052970	chr5:91052970:G:A	rs2697542	G	A	A	Hoxa9_MA0594.1	1	1	-	8.88286440866876	7.991314647558364	GCAATGAATCA
chr5	91816095	91816096	chr5:91816096:C:T	rs2973848	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	92190343	92190344	chr5:92190344:G:A	rs4916883	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	92190365	92190366	chr5:92190366:G:A	rs4916884	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	92468432	92468433	chr5:92468433:G:A	rs10780123	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	92991609	92991610	chr5:92991610:T:C	rs890589806	T	C	T	Hoxa9_MA0594.1	3	1	-	7.565650261440604	4.583853834031746	GCCATAAAGCA
chr5	93079032	93079033	chr5:93079033:T:C	rs1400796091	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	93079067	93079068	chr5:93079068:G:A	rs1496335	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	93208378	93208379	chr5:93208379:A:C	rs75903342	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	93253873	93253874	chr5:93253874:A:T	rs78078662	A	T	T	Hoxa9_MA0594.1	6	1	+	8.4262430855653	5.585141324422155	GCCATAAATTT
chr5	93601870	93601871	chr5:93601871:T:A	rs115026201	T	A	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	94266411	94266412	chr5:94266412:A:C	rs6890849	A	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	95423069	95423070	chr5:95423070:T:G	rs6894872	T	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	95707612	95707613	chr5:95707613:G:A	rs150047416	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	95912267	95912268	chr5:95912268:C:T	rs3777190	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	96287504	96287505	chr5:96287505:A:G	rs1158506293	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	96426772	96426773	chr5:96426773:A:G	rs3811951	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	96626067	96626068	chr5:96626068:A:T	rs261237	A	T	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	96626068	96626069	chr5:96626069:C:T	rs3853204	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	96638640	96638641	chr5:96638641:C:T	rs155056	C	T	c	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	96857562	96857563	chr5:96857563:A:T	rs116257357	A	T	T	Hoxa9_MA0594.1	7	1	+	7.747238652244652	0.844304978541732	ATCATCAATCC
chr5	96903553	96903554	chr5:96903554:T:A	rs17408150	T	A	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	97070881	97070882	chr5:97070882:G:A	chr5:97070882:G:A	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	97071353	97071354	chr5:97071354:G:A	rs182950591	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	97132051	97132052	chr5:97132052:G:T	rs444243	G	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr5	97535156	97535157	chr5:97535157:A:G	rs34673178	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	97544320	97544321	chr5:97544321:G:A	rs112142532	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr5	97563227	97563228	chr5:97563228:G:C	rs10076476	G	C	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	97628825	97628826	chr5:97628826:A:G	rs17087647	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	97970564	97970565	chr5:97970565:G:A	rs2352229	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	98121912	98121913	chr5:98121913:T:C	rs12055020	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	98219007	98219008	chr5:98219008:T:A	rs7727963	T	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	98556810	98556811	chr5:98556811:C:T	rs1550809	C	T	C	Hoxa9_MA0594.1	1	1	+	10.845591197800056	9.95404143668966	GCAATCAATCA
chr5	98752971	98752972	chr5:98752972:A:G	rs12515608	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	99807198	99807199	chr5:99807199:G:T	rs7443682	G	T	T	Hoxa9_MA0594.1	2	1	-	9.283125442814011	8.16158747190031	GCCATACATCA
chr5	99900743	99900744	chr5:99900744:G:C	rs149381712	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	99919858	99919859	chr5:99919859:C:T	rs2927427	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	100644978	100644979	chr5:100644979:G:C	rs905828	G	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	100644995	100644996	chr5:100644996:A:G	rs10053862	A	G	A	Hoxa9_MA0594.1	7	1	+	10.652542986825011	3.7496093131220922	CTCATCAATCA
chr5	100833294	100833295	chr5:100833295:G:A	rs1559059	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	100837688	100837689	chr5:100837689:G:T	rs58992676	G	T	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	101321082	101321083	chr5:101321083:A:C	rs13358232	A	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	101626930	101626931	chr5:101626931:T:C	rs7709667	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	101626959	101626960	chr5:101626960:T:C	rs7709686	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	101643649	101643650	chr5:101643650:T:A	rs9327633	T	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	101709514	101709515	chr5:101709515:C:G	rs1479061	C	G	G	Hoxa9_MA0594.1	0	1	-	8.53481249235293	8.11177607157458	GCCATGAATCT
chr5	102049696	102049697	chr5:102049697:A:G	rs6869524	A	G	-	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	102062991	102062992	chr5:102062992:T:C	rs1600024	T	C	T	Hoxa9_MA0594.1	7	1	-	8.219694000462	1.3167603267590802	CAAATCAATCA
chr5	102583918	102583919	chr5:102583919:T:G	rs75561673	T	G	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr5	102666778	102666779	chr5:102666779:G:C	rs2657436	G	C	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	102668454	102668455	chr5:102668455:G:C	rs149105588	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	102752945	102752946	chr5:102752946:T:A	rs435394	T	A	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr5	102966232	102966233	chr5:102966233:A:T	rs2241565	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	103506259	103506260	chr5:103506260:C:T	rs143993354	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	103514566	103514567	chr5:103514567:G:A	chr5:103514567:G:A	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	103681897	103681898	chr5:103681898:T:C	rs1152175	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	103861593	103861594	chr5:103861594:C:G	rs73197430	C	G	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	104372700	104372701	chr5:104372701:A:G	rs1248793560	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	104408030	104408031	chr5:104408031:C:T	rs55649128	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	104444876	104444877	chr5:104444877:T:C	rs17405024	T	C	T	Hoxa9_MA0594.1	3	1	-	8.899082879431504	5.917286452022643	AACATCAATCA
chr5	104491687	104491688	chr5:104491688:A:T	rs17165660	A	T	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	104501831	104501832	chr5:104501832:C:T	rs139656059	C	T	c	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	104770576	104770577	chr5:104770577:C:T	rs13169734	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	104942943	104942944	chr5:104942944:G:A	chr5:104942944:G:A	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	104942961	104942962	chr5:104942962:T:C	rs1438656	T	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	105158953	105158954	chr5:105158954:G:A	rs10066205	G	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	105392442	105392443	chr5:105392443:C:T	rs796344041	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	105525871	105525872	chr5:105525872:C:G	rs7722179	C	G	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	105698110	105698111	chr5:105698111:A:T	rs4601021	A	T	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	106497301	106497302	chr5:106497302:T:C	rs13173218	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	106827446	106827447	chr5:106827447:A:C	rs180807430	A	C	a	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	107149747	107149748	chr5:107149748:A:G	rs1833606	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	107286913	107286914	chr5:107286914:G:A	rs13179809	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	107337684	107337685	chr5:107337685:T:C	rs444702	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	107396442	107396443	chr5:107396443:T:C	rs431982	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	107520128	107520129	chr5:107520129:C:A	rs250252	C	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	107555320	107555321	chr5:107555321:C:A	rs11957374	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	107805825	107805826	chr5:107805826:C:T	rs6864994	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr5	107965018	107965019	chr5:107965019:C:T	rs79522323	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	108169058	108169059	chr5:108169059:G:C	rs34421	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	108366660	108366661	chr5:108366661:T:C	rs17161284	T	C	T	Hoxa9_MA0594.1	7	1	-	8.004489436656911	1.1015557629539905	GCAATCTATCA
chr5	108528901	108528902	chr5:108528902:A:G	rs56023946	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	108626301	108626302	chr5:108626302:G:A	rs11750495	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	108798265	108798266	chr5:108798266:A:G	rs2229085	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr5	108942243	108942244	chr5:108942244:A:G	rs66485253	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	109255910	109255911	chr5:109255911:T:C	rs1862202	T	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	109255952	109255953	chr5:109255953:C:T	rs72793039	C	T	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr5	109407070	109407071	chr5:109407071:A:T	rs77075929	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	109408325	109408326	chr5:109408326:C:T	rs77329528	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	109417088	109417089	chr5:109417089:G:A	rs2963027	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	110054386	110054387	chr5:110054387:T:C	rs186471464	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	110087265	110087266	chr5:110087266:T:C	rs115796934	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	110087272	110087273	chr5:110087273:T:A	rs1056894305	T	A	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	110391886	110391887	chr5:110391887:G:A	chr5:110391887:G:A	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	110414743	110414744	chr5:110414744:A:G	rs138758428	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	110414777	110414778	chr5:110414778:G:C	rs311709	G	C	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	110414781	110414782	chr5:110414782:G:A	rs12513985	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	110858069	110858070	chr5:110858070:A:G	rs4377748	A	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	110900178	110900179	chr5:110900179:G:A	rs1862532	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	111158547	111158548	chr5:111158548:G:A	rs9326826	G	A	G	Hoxa9_MA0594.1	9	1	-	9.642272946632424	7.017559728048186	ATAATAAATCA
chr5	111513854	111513855	chr5:111513855:G:T	rs79343006	G	T	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	111522181	111522182	chr5:111522182:T:A	rs72792075	T	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	111562691	111562692	chr5:111562692:A:G	rs518235	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	111603954	111603955	chr5:111603955:C:A	rs12658956	C	A	C	Hoxa9_MA0594.1	5	1	+	8.91937952935117	9.472796552016483	CCCATCAATTA
chr5	111624735	111624736	chr5:111624736:T:C	rs1351133	T	C	T	Hoxa9_MA0594.1	4	1	+	8.107577641616745	1.1988228623015238	TTCATCAATCA
chr5	111813782	111813783	chr5:111813783:A:C	rs6894855	A	C	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	111901334	111901335	chr5:111901335:A:C	rs78673119	A	C	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	111901342	111901343	chr5:111901343:G:T	rs75085016	G	T	G	Hoxa9_MA0594.1	9	1	-	8.787894669125532	5.72006483622944	GTCATATATCA
chr5	112064453	112064454	chr5:112064454:G:C	rs1389310	G	C	G	Hoxa9_MA0594.1	2	1	-	8.027829768240773	1.503929780492434	CTCATCAATTA
chr5	112333014	112333015	chr5:112333015:T:C	rs12517378	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr5	112706831	112706832	chr5:112706832:A:C	rs1028440726	A	C	A	Hoxa9_MA0594.1	7	1	+	7.632183602891756	2.6476420493502566	ACCATCAAACA
chr5	112914500	112914501	chr5:112914501:C:T	rs193527	C	T	c	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	113058682	113058683	chr5:113058683:T:G	rs6879589	T	G	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	113084956	113084957	chr5:113084957:G:C	rs114721114	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	113145586	113145587	chr5:113145587:C:A	rs10040328	C	A	C	Hoxa9_MA0594.1	1	1	+	8.034113823095115	5.831253046535411	ACCATCAATAA
chr5	113146951	113146952	chr5:113146952:G:A	rs7726679	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr5	113237142	113237143	chr5:113237143:C:T	rs13355627	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	113367849	113367850	chr5:113367850:A:T	rs10076511	A	T	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	113463671	113463672	chr5:113463672:C:A	rs463167	C	A	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	113479701	113479702	chr5:113479702:C:T	rs444322	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	113531222	113531223	chr5:113531223:C:T	rs13167659	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	113531229	113531230	chr5:113531230:C:G	rs6898425	C	G	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	113660727	113660728	chr5:113660728:C:A	rs187014636	C	A	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	113718682	113718683	chr5:113718683:A:G	rs6885608	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	113742590	113742591	chr5:113742591:C:G	rs931858196	C	G	c	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	113781130	113781131	chr5:113781131:A:G	rs10045721	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	113795000	113795001	chr5:113795001:T:C	rs17135985	T	C	T	Hoxa9_MA0594.1	7	1	-	9.050786138279621	2.1478524645767014	GCCATAAAACA
chr5	114243510	114243511	chr5:114243511:G:T	rs185460260	G	T	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	114309728	114309729	chr5:114309729:C:T	rs1379560	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	114412873	114412874	chr5:114412874:C:T	rs337711	C	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	114523900	114523901	chr5:114523901:T:G	rs11241283	T	G	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	115056561	115056562	chr5:115056562:A:G	rs4360034	A	G	A	Hoxa9_MA0594.1	5	1	+	8.62774971750127	6.111605905704661	CCCATAAAACA
chr5	115210936	115210937	chr5:115210937:T:G	rs73253463	T	G	T	Hoxa9_MA0594.1	4	1	+	9.642272946632424	2.7335181673172038	ATAATAAATCA
chr5	115258417	115258418	chr5:115258418:G:T	rs3805581	G	T	G	Hoxa9_MA0594.1	2	1	-	8.787894669125532	7.666356698211828	GTCATATATCA
chr5	115286357	115286358	chr5:115286358:G:A	rs2963772	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	115382179	115382180	chr5:115382180:A:G	rs527834659	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	115432939	115432940	chr5:115432940:C:T	rs269517	C	T	T	Hoxa9_MA0594.1	9	1	+	8.773111023127315	6.148397804543076	CAAATAAATCA
chr5	115452676	115452677	chr5:115452677:G:A	rs2546476	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	115560897	115560898	chr5:115560898:G:A	rs256971	G	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	115639700	115639701	chr5:115639701:G:A	rs13186296	G	A	G	Hoxa9_MA0594.1	5	1	-	9.08885592396711	6.668716916637422	ATAATCAATCA
chr5	115785657	115785658	chr5:115785658:C:T	rs12516716	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	115807586	115807587	chr5:115807587:G:A	rs35053218	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr5	116075610	116075611	chr5:116075611:A:C	rs12719212	A	C	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	116130328	116130329	chr5:116130329:T:C	rs11241364	T	C	T	Hoxa9_MA0594.1	10	1	-	9.126027407570612	2.4892544218178436	GCCATCTATCA
chr5	116153800	116153801	chr5:116153801:G:A	rs1508870	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	116238332	116238333	chr5:116238333:G:A	rs115868457	G	A	G	Hoxa9_MA0594.1	2	1	-	9.123953740605721	7.203622657478498	CCCATTAATCA
chr5	116386793	116386794	chr5:116386794:G:A	rs7703121	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	116765745	116765746	chr5:116765746:A:T	rs10062738	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	117407316	117407317	chr5:117407317:G:A	rs2624455	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	117498245	117498246	chr5:117498246:C:A	rs10062047	C	A	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	117521893	117521894	chr5:117521894:A:G	rs390708	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	117856343	117856344	chr5:117856344:G:A	rs140738442	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	118034715	118034716	chr5:118034716:C:T	rs12517363	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	118342802	118342803	chr5:118342803:A:G	rs6595120	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	118554962	118554963	chr5:118554963:C:T	rs77520493	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	118615165	118615166	chr5:118615166:G:A	rs78953845	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	118615189	118615190	chr5:118615190:A:G	rs6881807	A	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	118615192	118615193	chr5:118615193:G:A	rs184824963	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	118702033	118702034	chr5:118702034:A:C	rs10045248	A	C	C	Hoxa9_MA0594.1	7	1	+	8.234477646460217	3.249936092918718	GTCATCTATCA
chr5	119031975	119031976	chr5:119031976:T:C	rs373172892	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	119331914	119331915	chr5:119331915:C:G	rs7704386	C	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	119331946	119331947	chr5:119331947:C:T	rs7704398	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	119744118	119744119	chr5:119744119:T:C	rs162600	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	120104123	120104124	chr5:120104124:T:C	rs7721883	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	120160304	120160305	chr5:120160305:A:G	rs10069820	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	120568098	120568099	chr5:120568099:T:C	rs17146783	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	120568107	120568108	chr5:120568108:T:C	rs10478480	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	120672084	120672085	chr5:120672085:C:A	rs2011072	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr5	120684343	120684344	chr5:120684344:G:C	rs148070776	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	120684345	120684346	chr5:120684346:G:A	rs111958909	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	120862019	120862020	chr5:120862020:C:A	rs373825513	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	121189024	121189025	chr5:121189025:G:A	rs1896656	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	121391935	121391936	chr5:121391936:A:G	rs13184792	A	G	A	Hoxa9_MA0594.1	4	1	-	12.520546191379072	5.611791412063853	GCCATAAATCA
chr5	121503700	121503701	chr5:121503701:G:A	rs761823044	G	A	g	Hoxa9_MA0594.1	14	0	-	0	0	.
chr5	121694913	121694914	chr5:121694914:A:G	rs7727347	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	121762696	121762697	chr5:121762697:T:C	rs56012350	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	121819825	121819826	chr5:121819826:G:T	rs7736854	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	121923752	121923753	chr5:121923753:T:G	rs139441683	T	G	T	Hoxa9_MA0594.1	6	1	-	9.064232820513286	5.826812071948225	ACAATAAATCT
chr5	122024429	122024430	chr5:122024430:T:A	chr5:122024430:T:A	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	122036249	122036250	chr5:122036250:G:A	rs79063554	G	A	G	Hoxa9_MA0594.1	1	1	-	11.655360678656521	10.763810917546127	ACCATAAATCA
chr5	122126738	122126739	chr5:122126739:A:G	rs186277856	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	122493803	122493804	chr5:122493804:C:T	rs6866316	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr5	122502910	122502911	chr5:122502911:C:T	rs7726970	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	122916021	122916022	chr5:122916022:C:G	rs246303	C	G	C	Hoxa9_MA0594.1	5	1	-	8.01767889594621	9.980405685077507	ACAATGAATCA
chr5	122936597	122936598	chr5:122936598:G:C	rs30043	G	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	122997683	122997684	chr5:122997684:C:T	rs13187952	C	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	123001728	123001729	chr5:123001729:T:C	rs381007	T	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	123087777	123087778	chr5:123087778:C:T	rs4435861	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	123283704	123283705	chr5:123283705:G:T	rs151279543	G	T	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr5	123691163	123691164	chr5:123691164:C:G	rs531694564	C	G	C	Hoxa9_MA0594.1	1	1	+	8.134870038543875	5.076102076896912	CCAATATATCA
chr5	123691172	123691173	chr5:123691173:A:C	rs12521632	A	C	A	Hoxa9_MA0594.1	10	1	+	8.134870038543875	5.671714795907714	CCAATATATCA
chr5	123951829	123951830	chr5:123951830:T:C	rs189503449	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	124007952	124007953	chr5:124007953:G:T	rs12652207	G	T	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	124050886	124050887	chr5:124050887:A:C	rs17151182	A	C	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	124126560	124126561	chr5:124126561:T:C	rs6873606	T	C	C	Hoxa9_MA0594.1	4	1	+	7.801541603022757	0.8927868237075374	GACATGAATCA
chr5	124131020	124131021	chr5:124131021:G:A	rs4836066	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	124180069	124180070	chr5:124180070:T:G	rs12186497	T	G	G	Hoxa9_MA0594.1	10	1	-	9.552544425392455	7.089389182756294	TCCATAAATCA
chr5	124259548	124259549	chr5:124259549:G:A	rs116435601	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	124264020	124264021	chr5:124264021:A:C	rs7711913	A	C	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	124316256	124316257	chr5:124316257:A:T	rs17151579	A	T	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	124341684	124341685	chr5:124341685:A:G	rs188084286	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	124398815	124398816	chr5:124398816:C:T	rs895299	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	124519642	124519643	chr5:124519643:G:A	rs56369994	G	A	G	Hoxa9_MA0594.1	9	1	-	7.643262731242535	5.0185495126582955	GTCATGAATCT
chr5	124606317	124606318	chr5:124606318:A:G	rs12110019	A	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	124668982	124668983	chr5:124668983:A:G	rs13162118	A	G	A	Hoxa9_MA0594.1	4	1	-	11.050956304149539	4.142201524834319	GCCATAAATCT
chr5	125058335	125058336	chr5:125058336:G:A	rs72787443	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr5	125058356	125058357	chr5:125058357:A:G	rs116412217	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	125086432	125086433	chr5:125086433:C:T	rs150726897	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	125142783	125142784	chr5:125142784:T:A	rs4836151	T	A	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	125374002	125374003	chr5:125374003:C:A	rs72782935	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	125374014	125374015	chr5:125374015:C:T	rs72782936	C	T	C	Hoxa9_MA0594.1	1	1	-	8.485324786288448	9.341231971375704	CGCATCAATCA
chr5	125613403	125613404	chr5:125613404:A:C	rs72786826	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	125814238	125814239	chr5:125814239:G:C	rs72790832	G	C	G	Hoxa9_MA0594.1	5	1	-	7.656437520341079	5.693710731209784	GCCATCTATCT
chr5	126221607	126221608	chr5:126221608:T:C	rs138497523	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	126351265	126351266	chr5:126351266:T:C	rs116378577	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	126512663	126512664	chr5:126512664:C:G	rs77885874	C	G	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	126528028	126528029	chr5:126528029:A:C	rs10053600	A	C	C	Hoxa9_MA0594.1	10	1	+	7.1426138406622535	4.679458598026093	CCCATAAAGCA
chr5	126595079	126595080	chr5:126595080:G:C	chr5:126595080:G:C	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	126679698	126679699	chr5:126679699:C:T	rs144928435	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr5	126869002	126869003	chr5:126869003:T:G	rs552342905	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	126983647	126983648	chr5:126983648:T:C	rs116771298	T	C	T	Hoxa9_MA0594.1	0	1	-	10.763810917546127	11.628996430268678	ATCATAAATCA
chr5	127073293	127073294	chr5:127073294:A:G	rs73783529	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	127073295	127073296	chr5:127073296:T:C	rs1038117537	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	127182993	127182994	chr5:127182994:C:T	rs248105	C	T	C	Hoxa9_MA0594.1	9	1	+	9.929418333235837	7.304705114651599	GCAATAAATCT
chr5	127193156	127193157	chr5:127193157:G:T	rs193712	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	127193282	127193283	chr5:127193283:T:C	rs248131	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	127312375	127312376	chr5:127312376:G:A	rs189339682	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	127740084	127740085	chr5:127740085:G:A	rs790827	G	A	G	Hoxa9_MA0594.1	0	1	-	8.742804766854166	6.197839421645898	CTCATAAATCC
chr5	127813882	127813883	chr5:127813883:T:C	rs79452965	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	128237917	128237918	chr5:128237918:G:T	rs1478448	G	T	G	Hoxa9_MA0594.1	2	1	-	9.112852618472068	7.991314647558364	GTCATGAATCA
chr5	128272439	128272440	chr5:128272440:A:G	rs75856965	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	128579173	128579174	chr5:128579174:T:A	rs6898190	T	A	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	128737829	128737830	chr5:128737830:A:G	rs247183	A	G	A	Hoxa9_MA0594.1	3	1	+	10.652542986825011	7.670746559416154	CTCATCAATCA
chr5	128846350	128846351	chr5:128846351:C:T	rs62391242	C	T	c	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	129141745	129141746	chr5:129141746:G:A	rs17839618	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	129361435	129361436	chr5:129361436:T:C	rs10054817	T	C	T	Hoxa9_MA0594.1	4	1	+	9.342415950129519	2.4336611708142994	GCCATCAATTA
chr5	129377821	129377822	chr5:129377822:A:G	rs75324866	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	129575408	129575409	chr5:129575409:C:A	rs4836462	C	A	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	129739821	129739822	chr5:129739822:C:T	rs79834228	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	130333295	130333296	chr5:130333296:G:A	rs1157409	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	130760054	130760055	chr5:130760055:G:A	rs72799872	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	131833243	131833244	chr5:131833244:C:T	rs2404776	C	T	C	Hoxa9_MA0594.1	9	1	+	8.082954538162921	5.458241319578682	TCCATAAATCT
chr5	131998437	131998438	chr5:131998438:G:C	rs423957	G	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	132007960	132007961	chr5:132007961:T:C	rs116777133	T	C	T	Hoxa9_MA0594.1	4	1	+	7.118210716167953	0.20945593685273134	CCCATGAATCC
chr5	132024283	132024284	chr5:132024284:T:C	rs116215497	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	132052525	132052526	chr5:132052526:G:A	rs246752	G	A	G	Hoxa9_MA0594.1	3	1	+	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr5	132138291	132138292	chr5:132138292:A:G	rs115304450	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	132372199	132372200	chr5:132372200:C:T	rs2631359	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr5	132385586	132385587	chr5:132385587:C:G	rs75999741	C	G	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	132577732	132577733	chr5:132577733:T:C	rs78484432	T	C	T	Hoxa9_MA0594.1	6	1	-	8.848095527589834	2.0304947418341768	GACATAAATCT
chr5	132972260	132972261	chr5:132972261:C:T	rs12234077	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	133026182	133026183	chr5:133026183:C:T	rs142060819	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	133026201	133026202	chr5:133026202:G:A	rs3885730	G	A	G	Hoxa9_MA0594.1	0	1	+	9.461778229732111	8.59659271700956	GGCATAAATCA
chr5	133049590	133049591	chr5:133049591:A:G	rs77213250	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	133155869	133155870	chr5:133155870:A:G	rs7717377	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	133201162	133201163	chr5:133201163:T:C	rs10900815	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	133222420	133222421	chr5:133222421:G:A	rs890818	G	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr5	133516868	133516869	chr5:133516869:T:C	rs428184	T	C	C	Hoxa9_MA0594.1	10	1	-	9.030647460072283	2.3938744743195137	ACCATAAATTA
chr5	133664816	133664817	chr5:133664817:A:G	rs7727368	A	G	G	Hoxa9_MA0594.1	0	1	+	8.247667105749517	9.112852618472068	ATCATGAATCA
chr5	133715387	133715388	chr5:133715388:T:C	rs10052064	T	C	C	Hoxa9_MA0594.1	10	1	-	7.536004637837573	0.8992316520848043	GCCATAACTCA
chr5	133851066	133851067	chr5:133851067:A:G	rs35445236	A	G	A	Hoxa9_MA0594.1	3	1	+	8.00320666478695	5.021410237378092	CCCATAAATTT
chr5	133918157	133918158	chr5:133918158:A:G	rs17683751	A	G	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	134104184	134104185	chr5:134104185:T:C	rs30500	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	134137529	134137530	chr5:134137530:G:A	chr5:134137530:G:A	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	134255625	134255626	chr5:134255626:A:C	rs148125279	A	C	A	Hoxa9_MA0594.1	7	1	+	8.08407129645524	3.0995297429137416	GCTATGAATCA
chr5	134418914	134418915	chr5:134418915:C:G	rs28548942	C	G	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	134462590	134462591	chr5:134462591:A:G	rs7701457	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	135280884	135280885	chr5:135280885:G:C	rs3853685	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	135393831	135393832	chr5:135393832:T:C	rs779562	T	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	135863270	135863271	chr5:135863271:A:T	chr5:135863271:A:T	A	T	A	Hoxa9_MA0594.1	3	1	+	9.95404143668966	3.111304794081973	GTAATCAATCA
chr5	135941813	135941814	chr5:135941814:G:A	rs31546	G	A	A	Hoxa9_MA0594.1	9	1	-	7.608170449234994	4.983457230650756	GCAATCCATCA
chr5	136054895	136054896	chr5:136054896:G:A	rs115532933	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	136420551	136420552	chr5:136420552:T:G	rs115336549	T	G	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr5	136421930	136421931	chr5:136421931:T:G	rs6596303	T	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	136525615	136525616	chr5:136525616:G:A	rs77751064	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	136867645	136867646	chr5:136867646:T:G	rs2347578	T	G	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	137073321	137073322	chr5:137073322:G:T	rs113512183	G	T	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr5	137481469	137481470	chr5:137481470:G:A	rs1108547	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	137640002	137640003	chr5:137640003:C:T	rs11743510	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr5	137743191	137743192	chr5:137743192:A:C	rs141489715	A	C	A	Hoxa9_MA0594.1	3	1	+	8.11177607157458	4.183561647095338	CCCATGAATCT
chr5	137890936	137890937	chr5:137890937:C:G	rs12521309	C	G	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	138077096	138077097	chr5:138077097:G:A	rs11242415	G	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	138091078	138091079	chr5:138091079:C:T	rs12520886	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	138275551	138275552	chr5:138275552:T:C	rs142567664	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	138651302	138651303	chr5:138651303:A:G	rs74534317	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	138927870	138927871	chr5:138927871:C:T	rs59864201	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	138964145	138964146	chr5:138964146:A:G	rs17207828	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	138986386	138986387	chr5:138986387:C:G	rs549623337	C	G	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr5	139049977	139049978	chr5:139049978:A:G	rs541418131	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	139752883	139752884	chr5:139752884:G:A	rs112419009	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	139752928	139752929	chr5:139752929:A:C	rs260717	A	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	139752935	139752936	chr5:139752936:C:G	rs11954344	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	140151432	140151433	chr5:140151433:C:T	rs183869	C	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	141914021	141914022	chr5:141914022:A:G	rs17097850	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	141974374	141974375	chr5:141974375:T:G	rs77871833	T	G	T	Hoxa9_MA0594.1	6	1	-	9.581365958804113	6.343945210239051	CCCATGAATCA
chr5	142280230	142280231	chr5:142280231:A:G	rs4537084	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	142280232	142280233	chr5:142280233:C:T	rs111695194	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	142545575	142545576	chr5:142545576:A:G	rs10059649	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr5	142545581	142545582	chr5:142545582:G:A	rs114702855	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	142600475	142600476	chr5:142600476:A:C	rs2282793	A	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	142607115	142607116	chr5:142607116:T:G	rs13159871	T	G	T	Hoxa9_MA0594.1	8	1	-	8.159236377169226	4.755708380168788	GTCATAAAACA
chr5	142671090	142671091	chr5:142671091:A:C	rs17216853	A	C	A	Hoxa9_MA0594.1	0	1	+	8.260841894848062	8.702990986792262	ACCATCTATCA
chr5	142726997	142726998	chr5:142726998:C:G	rs558946160	C	G	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	142740965	142740966	chr5:142740966:A:C	rs2339286	A	C	C	Hoxa9_MA0594.1	7	1	+	7.0122332387752895	2.027691685233791	GCCATCAAGCA
chr5	142740965	142740966	chr5:142740966:A:T	chr5:142740966:A:T	A	T	C	Hoxa9_MA0594.1	7	1	+	7.0122332387752895	0.10929956507237026	GCCATCAAGCA
chr5	143054859	143054860	chr5:143054860:C:A	rs3776343	C	A	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	143061407	143061408	chr5:143061408:G:A	rs76889300	G	A	g	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	143133617	143133618	chr5:143133618:A:G	rs7723598	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	143148054	143148055	chr5:143148055:A:T	rs59774766	A	T	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	143153429	143153430	chr5:143153430:A:G	rs258801	A	G	A	Hoxa9_MA0594.1	3	1	+	9.196147443905666	6.214351016496806	GAAATAAATCA
chr5	143176166	143176167	chr5:143176167:A:G	rs6894946	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr5	143246482	143246483	chr5:143246483:G:C	rs853154	G	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	143353501	143353502	chr5:143353502:C:T	rs75689709	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	143829099	143829100	chr5:143829100:G:C	rs11167833	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	143913753	143913754	chr5:143913754:C:G	rs17101210	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	143916569	143916570	chr5:143916570:C:T	rs11951696	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	144085173	144085174	chr5:144085174:C:A	rs80217894	C	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	144321295	144321296	chr5:144321296:C:T	rs17101780	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	144329339	144329340	chr5:144329340:A:G	rs29894	A	G	G	Hoxa9_MA0594.1	1	1	-	9.165841187632518	10.057390948742912	GTCATAAATCC
chr5	144406265	144406266	chr5:144406266:A:G	rs74615001	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	144665979	144665980	chr5:144665980:G:C	rs3910187	G	C	C	Hoxa9_MA0594.1	2	1	-	9.452499902096816	2.928599914348477	AACATAAATCA
chr5	144723811	144723812	chr5:144723812:A:G	rs2041070	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	144775125	144775126	chr5:144775126:G:A	rs247565	G	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	145027521	145027522	chr5:145027522:A:G	rs31913	A	G	A	Hoxa9_MA0594.1	7	1	+	9.452499902096816	2.5495662283938967	AACATAAATCA
chr5	145350692	145350693	chr5:145350693:A:G	rs72815885	A	G	A	Hoxa9_MA0594.1	3	1	+	8.01767889594621	5.035882468537351	ACAATGAATCA
chr5	145352765	145352766	chr5:145352766:T:G	rs10044213	T	G	t	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	145619631	145619632	chr5:145619632:G:A	rs116608983	G	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	145856105	145856106	chr5:145856106:G:A	rs3995495	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	145938884	145938885	chr5:145938885:G:A	rs974869010	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	146199164	146199165	chr5:146199165:C:G	rs112919620	C	G	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr5	146409542	146409543	chr5:146409543:G:T	rs4705295	G	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr5	146608011	146608012	chr5:146608012:A:G	rs56791426	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	147188587	147188588	chr5:147188588:T:C	rs2042873	T	C	T	Hoxa9_MA0594.1	3	1	-	8.66099466428206	5.6791982368732	TTCATAAATCA
chr5	147217190	147217191	chr5:147217191:T:C	rs40477	T	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	147382903	147382904	chr5:147382904:A:G	rs115480034	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	147504137	147504138	chr5:147504138:A:G	rs190820451	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	147504140	147504141	chr5:147504141:G:A	rs11952675	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr5	147508595	147508596	chr5:147508596:T:A	rs562542737	T	A	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	147800555	147800556	chr5:147800556:C:A	rs1560677	C	A	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	147805156	147805157	chr5:147805157:C:T	rs73274040	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr5	147805173	147805174	chr5:147805174:G:A	rs992737877	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	147821646	147821647	chr5:147821647:T:A	rs6878679	T	A	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	147946883	147946884	chr5:147946884:A:G	rs2080962	A	G	G	Hoxa9_MA0594.1	3	1	+	8.729708420148697	5.747911992739839	GCCATCCATCA
chr5	148745446	148745447	chr5:148745447:T:C	rs59598688	T	C	T	Hoxa9_MA0594.1	8	1	+	7.415122238259951	0.5418341881600619	CTCATCCATCA
chr5	148989854	148989855	chr5:148989855:G:T	rs891920	G	T	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr5	148993590	148993591	chr5:148993591:C:T	rs2069087	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	149001754	149001755	chr5:149001755:G:A	rs3763020	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	149186040	149186041	chr5:149186041:A:G	rs6884531	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	149186051	149186052	chr5:149186052:A:T	rs4705326	A	T	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	149422834	149422835	chr5:149422835:G:T	rs186855878	G	T	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr5	149448553	149448554	chr5:149448554:C:A	rs73279570	C	A	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	149651776	149651777	chr5:149651777:A:G	rs35121730	A	G	a	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	149757394	149757395	chr5:149757395:A:G	rs4705369	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	150073886	150073887	chr5:150073887:T:C	rs1549919	T	C	C	Hoxa9_MA0594.1	9	1	+	9.00428321168444	11.628996430268678	GTCATAAATTA
chr5	150540952	150540953	chr5:150540953:G:A	rs932850723	G	A	G	Hoxa9_MA0594.1	1	1	-	9.080937505299248	8.189387744188851	CCCATCAATCC
chr5	150758505	150758506	chr5:150758506:T:A	rs17111322	T	A	T	Hoxa9_MA0594.1	8	1	+	8.93585297782921	5.466092924729758	GCAATAAATCC
chr5	150779904	150779905	chr5:150779905:A:T	rs73280106	A	T	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	151120171	151120172	chr5:151120172:C:T	rs4958897	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	151120206	151120207	chr5:151120207:G:A	rs79865212	G	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	151284581	151284582	chr5:151284582:G:A	rs367817277	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	151284621	151284622	chr5:151284622:G:C	rs17111902	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	151314014	151314015	chr5:151314015:C:G	rs383777	C	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	151433850	151433851	chr5:151433851:A:G	rs78219536	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	151740045	151740046	chr5:151740046:C:G	rs186998346	C	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	151805871	151805872	chr5:151805872:T:C	rs12522670	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	151805900	151805901	chr5:151805901:A:T	rs10036616	A	T	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	152008258	152008259	chr5:152008259:G:A	rs72802268	G	A	G	Hoxa9_MA0594.1	5	1	-	9.08885592396711	6.668716916637422	ATAATCAATCA
chr5	152143302	152143303	chr5:152143303:T:C	rs153530	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	152143316	152143317	chr5:152143317:T:C	rs11167571	T	C	T	Hoxa9_MA0594.1	4	1	+	9.037868572125442	2.129113792810221	GTAATAAATCT
chr5	152386317	152386318	chr5:152386318:C:T	rs1156933	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	152527564	152527565	chr5:152527565:T:C	rs79522802	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	152676536	152676537	chr5:152676537:C:T	rs11750746	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	153188801	153188802	chr5:153188802:T:C	rs11167615	T	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	154049626	154049627	chr5:154049627:T:A	rs689715	T	A	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	154241077	154241078	chr5:154241078:T:C	rs1541663	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr5	154401431	154401432	chr5:154401432:C:A	rs181028431	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	154650314	154650315	chr5:154650315:T:C	rs66508886	T	C	T	Hoxa9_MA0594.1	4	1	+	8.561166597372587	1.6524118180573657	GTCATAAATAA
chr5	154744032	154744033	chr5:154744033:G:A	rs59525998	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	154820702	154820703	chr5:154820703:G:A	rs11167702	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	154944968	154944969	chr5:154944969:C:G	rs348752	C	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	154970982	154970983	chr5:154970983:A:G	rs55747013	A	G	A	Hoxa9_MA0594.1	3	1	+	8.88286440866876	5.901067981259902	GCAATGAATCA
chr5	155004467	155004468	chr5:155004468:T:C	rs77656625	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	155053831	155053832	chr5:155053832:T:C	rs445362	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	155053836	155053837	chr5:155053837:C:T	rs395874	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	155139323	155139324	chr5:155139324:G:A	rs17116996	G	A	g	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	155460081	155460082	chr5:155460082:A:G	rs1385109	A	G	A	Hoxa9_MA0594.1	7	1	+	9.126027407570612	2.223093733867693	GCCATCTATCA
chr5	155460085	155460086	chr5:155460086:C:T	rs1385108	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	155549545	155549546	chr5:155549546:G:T	rs4312936	G	T	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	156344568	156344569	chr5:156344569:T:C	rs1801193	T	C	C	Hoxa9_MA0594.1	3	1	-	10.057390948742912	7.075594521334054	GCCATAAATCC
chr5	156437857	156437858	chr5:156437858:T:C	rs6880816	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	156590588	156590589	chr5:156590589:T:C	rs72801157	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr5	156920700	156920701	chr5:156920701:A:G	rs7718799	A	G	A	Hoxa9_MA0594.1	7	1	+	8.027829768240773	1.1248960945378537	CTCATCAATTA
chr5	157034264	157034265	chr5:157034265:T:G	rs6896306	T	G	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	157107714	157107715	chr5:157107715:G:A	rs74626883	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	157177862	157177863	chr5:157177863:C:T	rs115947447	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	157346776	157346777	chr5:157346777:G:A	rs962459	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	157369475	157369476	chr5:157369476:G:A	rs150866710	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr5	157519040	157519041	chr5:157519041:A:G	rs2042247	A	G	G	Hoxa9_MA0594.1	3	1	+	6.982587615172259	4.000791187763402	GCCATCACTCA
chr5	157569749	157569750	chr5:157569750:C:G	rs7707786	C	G	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	157609962	157609963	chr5:157609963:A:G	rs62390771	A	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	157714082	157714083	chr5:157714083:T:C	rs114056081	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr5	157714084	157714085	chr5:157714085:G:C	rs13356556	G	C	G	Hoxa9_MA0594.1	0	1	+	9.196147443905666	8.773111023127315	GAAATAAATCA
chr5	157718397	157718398	chr5:157718398:C:T	rs10053680	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr5	158026346	158026347	chr5:158026347:G:A	rs533074922	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	158241431	158241432	chr5:158241432:G:T	rs1173608	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	158278244	158278245	chr5:158278245:T:C	rs1173459	T	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr5	158389983	158389984	chr5:158389984:T:C	rs10076730	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	158411533	158411534	chr5:158411534:G:A	rs4551053	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	158606628	158606629	chr5:158606629:T:C	rs1651262	T	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	158750406	158750407	chr5:158750407:T:A	rs55768258	T	A	T	Hoxa9_MA0594.1	7	1	-	8.66099466428206	1.7580609905791387	TTCATAAATCA
chr5	158754273	158754274	chr5:158754274:C:G	rs72810383	C	G	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	158976163	158976164	chr5:158976164:G:T	rs80292847	G	T	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr5	159156710	159156711	chr5:159156711:T:C	rs145092198	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	159181871	159181872	chr5:159181872:T:C	rs34175829	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	159206634	159206635	chr5:159206635:G:A	rs62378717	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr5	159210987	159210988	chr5:159210988:T:G	rs2195933	T	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	159817603	159817604	chr5:159817604:C:T	rs114607122	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr5	159850452	159850453	chr5:159850453:G:A	rs115275643	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	159890408	159890409	chr5:159890409:C:T	rs6556460	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr5	159928908	159928909	chr5:159928909:T:C	rs74319842	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	159928934	159928935	chr5:159928935:G:A	rs114663835	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	160306705	160306706	chr5:160306706:T:C	rs13180487	T	C	t	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr5	160455789	160455790	chr5:160455790:C:A	rs1582418	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	160468473	160468474	chr5:160468474:A:T	rs538648160	A	T	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	160535184	160535185	chr5:160535185:A:G	rs4921146	A	G	G	Hoxa9_MA0594.1	7	1	+	9.196147443905666	2.2932137702027453	GAAATAAATCA
chr5	160549258	160549259	chr5:160549259:T:C	rs10059502	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr5	160668997	160668998	chr5:160668998:G:C	rs77423861	G	C	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	160888061	160888062	chr5:160888062:G:T	rs10074326	G	T	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	161084815	161084816	chr5:161084816:G:C	rs902149	G	C	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	161535887	161535888	chr5:161535888:A:G	rs56394217	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	162408616	162408617	chr5:162408617:T:G	rs6556605	T	G	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr5	162485209	162485210	chr5:162485210:G:A	rs10042997	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	162543677	162543678	chr5:162543678:T:C	rs1905582	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr5	163208510	163208511	chr5:163208511:G:C	rs59389435	G	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	163256767	163256768	chr5:163256768:T:C	rs214114	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	163437488	163437489	chr5:163437489:G:C	chr5:163437489:G:C	G	C	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	163439178	163439179	chr5:163439179:G:C	rs550507893	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	163489406	163489407	chr5:163489407:C:T	rs11748030	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr5	163489421	163489422	chr5:163489422:A:G	rs299316	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr5	164052992	164052993	chr5:164052993:G:T	rs28575298	G	T	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	164058637	164058638	chr5:164058638:G:A	rs147999261	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	164397288	164397289	chr5:164397289:A:G	rs10475742	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	164562501	164562502	chr5:164562502:C:G	rs250590	C	G	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	164799291	164799292	chr5:164799292:A:G	rs2963125	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	165003356	165003357	chr5:165003357:A:G	rs13173293	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr5	165093532	165093533	chr5:165093533:T:C	rs72809532	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	165093547	165093548	chr5:165093548:C:A	rs72809533	C	A	C	Hoxa9_MA0594.1	9	1	+	11.101943655991207	8.034113823095115	ACCATCAATCA
chr5	165188549	165188550	chr5:165188550:T:G	rs3095950	T	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	166233970	166233971	chr5:166233971:T:A	rs1392277	T	A	T	Hoxa9_MA0594.1	5	1	-	9.00428321168444	6.0307271816894366	GTCATAAATTA
chr5	166400799	166400800	chr5:166400800:C:T	rs830920	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	166643434	166643435	chr5:166643435:G:A	rs3110975	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr5	166722873	166722874	chr5:166722874:A:T	rs116570012	A	T	A	Hoxa9_MA0594.1	4	1	-	9.08885592396711	2.180101144651889	ATAATCAATCA
chr5	167294188	167294189	chr5:167294189:C:A	rs10475839	C	A	A	Hoxa9_MA0594.1	10	1	+	8.638788413355046	11.101943655991207	ACCATCAATCC
chr5	167405912	167405913	chr5:167405913:C:G	rs13162461	C	G	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr5	167671317	167671318	chr5:167671318:T:C	rs4432913	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	167713474	167713475	chr5:167713475:A:G	rs6555766	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	167790199	167790200	chr5:167790200:T:G	chr5:167790200:T:G	T	G	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr5	167807055	167807056	chr5:167807056:G:A	rs7707689	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	167832204	167832205	chr5:167832205:A:G	rs4869075	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr5	167877603	167877604	chr5:167877604:T:C	rs17526010	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	167913019	167913020	chr5:167913020:A:C	rs12109455	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	167968056	167968057	chr5:167968057:T:C	rs1422934	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	168147786	168147787	chr5:168147787:G:A	rs2337129	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	168793860	168793861	chr5:168793861:C:T	rs569001313	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr5	168878622	168878623	chr5:168878623:C:T	rs13187833	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	168884228	168884229	chr5:168884229:C:T	rs139847360	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr5	169079174	169079175	chr5:169079175:T:G	rs6874729	T	G	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	169585124	169585125	chr5:169585125:C:A	rs116538656	C	A	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr5	169814868	169814869	chr5:169814869:A:C	rs246768	A	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr5	169876014	169876015	chr5:169876015:G:A	rs724160	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	169971247	169971248	chr5:169971248:A:G	rs17738164	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr5	169971254	169971255	chr5:169971255:C:A	rs61447875	C	A	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	170201226	170201227	chr5:170201227:T:C	rs11741033	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr5	170424060	170424061	chr5:170424061:G:A	rs2174416	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	170436875	170436876	chr5:170436876:G:T	rs6897122	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	170439204	170439205	chr5:170439205:G:A	rs35263968	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr5	171322274	171322275	chr5:171322275:C:T	rs919325	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr5	171393311	171393312	chr5:171393312:G:A	rs11134697	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr5	171395669	171395670	chr5:171395670:C:T	rs17680871	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr5	171611487	171611488	chr5:171611488:A:G	rs29619	A	G	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr5	171648945	171648946	chr5:171648946:C:A	rs154362	C	A	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	171661616	171661617	chr5:171661617:G:T	rs257370	G	T	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	171661622	171661623	chr5:171661623:T:C	rs56920429	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	171845338	171845339	chr5:171845339:G:A	rs571518672	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr5	172089582	172089583	chr5:172089583:A:G	rs62381964	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr5	172219427	172219428	chr5:172219428:C:T	rs10035786	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	172245896	172245897	chr5:172245897:G:A	rs6882674	G	A	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr5	172411076	172411077	chr5:172411077:C:T	rs4407643	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	172573323	172573324	chr5:172573324:T:C	rs10044047	T	C	T	Hoxa9_MA0594.1	3	1	-	8.08407129645524	5.102274869046382	GCTATGAATCA
chr5	172758307	172758308	chr5:172758308:C:G	rs79411743	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	172770035	172770036	chr5:172770036:T:C	rs35084382	T	C	T	Hoxa9_MA0594.1	8	1	+	8.34024025881841	1.4669522087185203	GGAATAAATCA
chr5	172844003	172844004	chr5:172844004:A:G	rs792975	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	172868710	172868711	chr5:172868711:G:C	rs143895544	G	C	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr5	172868746	172868747	chr5:172868747:A:T	rs11949987	A	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	172894904	172894905	chr5:172894905:G:T	rs490928	G	T	G	Hoxa9_MA0594.1	1	1	-	7.656437520341079	5.453576743781373	GCCATCTATCT
chr5	173187699	173187700	chr5:173187700:T:C	rs17075673	T	C	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr5	173235938	173235939	chr5:173235939:C:G	rs115194292	C	G	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr5	173537496	173537497	chr5:173537497:G:T	rs7721535	G	T	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	173572523	173572524	chr5:173572524:T:C	rs7703857	T	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr5	173746448	173746449	chr5:173746449:A:G	rs58707582	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	173764919	173764920	chr5:173764920:C:T	rs10042438	C	T	C	Hoxa9_MA0594.1	5	1	+	7.864522907426146	5.444383900096458	ACCATCCATCA
chr5	173772717	173772718	chr5:173772718:G:C	rs1248820935	G	C	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr5	173772750	173772751	chr5:173772751:C:A	rs2594831	C	A	c	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	173858985	173858986	chr5:173858986:T:C	rs184510850	T	C	t	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr5	173866506	173866507	chr5:173866507:C:T	rs1052850893	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr5	174150377	174150378	chr5:174150378:C:T	rs79787868	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr5	174189769	174189770	chr5:174189770:C:T	rs6866159	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr5	174203500	174203501	chr5:174203501:A:C	rs11952072	A	C	A	Hoxa9_MA0594.1	8	1	-	9.030647460072283	4.0757515301338145	ACCATAAATTA
chr5	174293223	174293224	chr5:174293224:C:T	rs12658280	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr5	174409293	174409294	chr5:174409294:C:T	rs57853601	C	T	C	Hoxa9_MA0594.1	9	1	+	9.894648994041017	7.269935775456778	CACATAAATCA
chr5	174511562	174511563	chr5:174511563:T:C	rs58393289	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	174574990	174574991	chr5:174574991:A:C	rs183436034	A	C	A	Hoxa9_MA0594.1	2	1	+	9.506381912457487	10.627919883371188	CCAATAAATCT
chr5	174608708	174608709	chr5:174608709:G:A	rs6866646	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr5	174608723	174608724	chr5:174608724:G:A	chr5:174608724:G:A	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	174735668	174735669	chr5:174735669:G:A	rs950499719	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr5	175003340	175003341	chr5:175003341:T:C	rs28669813	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr5	175288563	175288564	chr5:175288564:A:G	rs887436232	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	175341794	175341795	chr5:175341795:G:T	rs4242186	G	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr5	175484229	175484230	chr5:175484230:C:T	rs13180322	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr5	175563228	175563229	chr5:175563229:A:C	rs10044262	A	C	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr5	176606661	176606662	chr5:176606662:A:G	rs10044781	A	G	A	Hoxa9_MA0594.1	10	1	+	11.967129168713758	5.330356182960989	GCCATCAATCA
chr5	176706067	176706068	chr5:176706068:G:A	rs17078428	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	176733550	176733551	chr5:176733551:C:T	rs185499932	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	176733551	176733552	chr5:176733552:G:A	rs533930842	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr5	177374395	177374396	chr5:177374396:T:G	rs59436610	T	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	177692684	177692685	chr5:177692685:G:C	rs75399987	G	C	.	Hoxa9_MA0594.1	25	0	+	0	0	.
chr5	177959327	177959328	chr5:177959328:T:A	rs73339883	T	A	.	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr5	178106772	178106773	chr5:178106773:A:G	rs57472053	A	G	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr5	178151268	178151269	chr5:178151269:C:T	rs78118854	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	178320689	178320690	chr5:178320690:T:C	rs17081072	T	C	T	Hoxa9_MA0594.1	7	1	-	9.112852618472068	2.209918944769148	GTCATGAATCA
chr5	178332326	178332327	chr5:178332327:T:C	rs191623567	T	C	t	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr5	178349146	178349147	chr5:178349147:G:T	rs751181	G	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr5	178476355	178476356	chr5:178476356:C:T	rs682003	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr5	178538631	178538632	chr5:178538632:T:C	rs564195	T	C	T	Hoxa9_MA0594.1	8	1	+	8.476262915039317	1.6029748649394273	CCCATCAATAA
chr5	178562687	178562688	chr5:178562688:C:A	rs262038	C	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr5	178989061	178989062	chr5:178989062:G:A	rs2645339	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr5	179111470	179111471	chr5:179111471:G:A	rs3797615	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr5	179123867	179123868	chr5:179123868:T:C	rs10447302	T	C	T	Hoxa9_MA0594.1	10	1	-	8.306671999370346	1.6698990136175773	CCCATCCATCA
chr5	179481968	179481969	chr5:179481969:G:T	rs4700834	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr5	179527096	179527097	chr5:179527097:G:C	rs1044858	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr5	179606959	179606960	chr5:179606960:T:C	rs68054433	T	C	t	Hoxa9_MA0594.1	28	0	+	0	0	.
chr5	179753568	179753569	chr5:179753569:G:A	rs78703004	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr5	180075450	180075451	chr5:180075451:C:G	rs187686648	C	G	C	Hoxa9_MA0594.1	9	1	+	8.07066746510666	1.272336503405812	ACAATAAATCC
chr5	180304694	180304695	chr5:180304695:C:T	rs729652	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	180315987	180315988	chr5:180315988:T:C	rs59000272	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr5	180315989	180315990	chr5:180315990:C:T	rs58575540	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr5	180493377	180493378	chr5:180493378:T:C	rs77611814	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr5	180494977	180494978	chr5:180494978:G:C	rs553636165	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	180608346	180608347	chr5:180608347:C:T	rs2387212	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr5	180689873	180689874	chr5:180689874:C:T	rs4074596	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr5	180843855	180843856	chr5:180843856:A:G	rs113804486	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr5	181473687	181473688	chr5:181473688:A:G	rs11744237	A	G	.	Hoxa9_MA0594.1	3	1	+	10.004402379582464	7.022605952173604	GCCATGAATCA
chr6	191672	191673	chr6:191673:G:A	rs72650625	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	209976	209977	chr6:209977:T:A	rs79283275	T	A	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	209979	209980	chr6:209980:T:C	rs17133787	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	290832	290833	chr6:290833:T:G	rs1381179352	T	G	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	300164	300165	chr6:300165:C:T	rs59772395	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	405451	405452	chr6:405452:T:A	rs11242862	T	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	405456	405457	chr6:405457:T:C	rs2280118	T	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	422630	422631	chr6:422631:C:A	rs62389424	C	A	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	451841	451842	chr6:451842:A:T	rs529044177	A	T	A	Hoxa9_MA0594.1	6	1	+	8.484451549460127	5.64334978831698	GTAATCAATCT
chr6	683803	683804	chr6:683804:C:T	rs17834207	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	740914	740915	chr6:740915:C:A	rs2788233	C	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	1102252	1102253	chr6:1102253:G:A	rs7749569	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	1193231	1193232	chr6:1193232:T:G	rs238016	T	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	1256034	1256035	chr6:1256035:A:G	rs1812102	A	G	G	Hoxa9_MA0594.1	3	1	+	8.59659271700956	5.614796289600702	AGCATAAATCA
chr6	1365030	1365031	chr6:1365031:C:G	rs9392285	C	G	C	Hoxa9_MA0594.1	1	1	+	9.581365958804113	6.522597997157151	CCCATGAATCA
chr6	1365044	1365045	chr6:1365045:G:C	rs1711944	G	C	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	1438288	1438289	chr6:1438289:C:T	rs2816234	C	T	C	Hoxa9_MA0594.1	9	1	+	8.232403979495325	5.607690760911086	CTCATTAATCA
chr6	1519510	1519511	chr6:1519511:A:T	rs57770600	A	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	1626671	1626672	chr6:1626672:C:G	rs55702212	C	G	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	1702887	1702888	chr6:1702888:C:T	rs7745272	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	1816397	1816398	chr6:1816398:G:A	rs9378314	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	1838804	1838805	chr6:1838805:C:T	rs114184769	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	1904014	1904015	chr6:1904015:C:G	rs139725726	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	1904039	1904040	chr6:1904040:G:A	rs115911646	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	2243768	2243769	chr6:2243769:T:A	rs111687588	T	A	T	Hoxa9_MA0594.1	4	1	+	8.417211793056513	1.508457013741292	GCAGTAAATCA
chr6	2449173	2449174	chr6:2449174:A:C	rs34077848	A	C	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	2504266	2504267	chr6:2504267:T:C	rs76220589	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	2529610	2529611	chr6:2529611:A:G	rs2794570	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	2715912	2715913	chr6:2715913:T:C	rs149388849	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	2716248	2716249	chr6:2716249:C:T	rs57084793	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	2716284	2716285	chr6:2716285:A:T	rs6913006	A	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	2861376	2861377	chr6:2861377:A:G	rs66792821	A	G	A	Hoxa9_MA0594.1	3	1	+	9.929418333235837	6.947621905826979	GCAATAAATCT
chr6	2861396	2861397	chr6:2861397:T:C	rs62391492	T	C	-	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	2943236	2943237	chr6:2943237:T:G	rs77625977	T	G	T	Hoxa9_MA0594.1	1	1	+	8.614832151347091	6.447613950810525	CTAATAAATCT
chr6	2956978	2956979	chr6:2956979:G:A	rs4959749	G	A	g	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	2979664	2979665	chr6:2979665:C:T	rs111789886	C	T	c	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	3086771	3086772	chr6:3086772:C:G	rs9391981	C	G	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	3200236	3200237	chr6:3200237:G:A	rs367761565	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	3367044	3367045	chr6:3367045:C:T	rs139857797	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	3419196	3419197	chr6:3419197:A:G	rs6915982	A	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	3720028	3720029	chr6:3720029:G:A	rs12198284	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	3743380	3743381	chr6:3743381:C:T	rs144414546	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	3748955	3748956	chr6:3748956:C:T	rs111978682	C	T	T	Hoxa9_MA0594.1	1	1	+	9.064232820513286	8.17268305940289	ACAATAAATCT
chr6	3768540	3768541	chr6:3768541:T:C	rs62392421	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	3796725	3796726	chr6:3796726:T:C	rs192926004	T	C	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	4016113	4016114	chr6:4016114:T:C	rs12110567	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	4018097	4018098	chr6:4018098:T:C	rs17137488	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	4282197	4282198	chr6:4282198:C:T	rs371189223	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	4289902	4289903	chr6:4289903:C:T	rs6934489	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	4376940	4376941	chr6:4376941:G:A	rs569489	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	4574551	4574552	chr6:4574552:T:C	rs80256896	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	4937919	4937920	chr6:4937920:T:C	rs550336833	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	4986015	4986016	chr6:4986016:G:A	rs13197142	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	5011488	5011489	chr6:5011489:C:T	rs2764189	C	T	.	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	5435222	5435223	chr6:5435223:G:A	rs2432761	G	A	g	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	5442819	5442820	chr6:5442820:A:G	rs200202	A	G	a	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	5453873	5453874	chr6:5453874:C:T	rs138217638	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	5457988	5457989	chr6:5457989:A:T	rs2791457	A	T	A	Hoxa9_MA0594.1	8	1	-	8.038914744234518	4.569154691135066	GCCCTCAATCA
chr6	5701307	5701308	chr6:5701308:G:A	rs9405281	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	5910095	5910096	chr6:5910096:T:C	rs1001290	T	C	C	Hoxa9_MA0594.1	7	1	-	9.452499902096816	2.5495662283938967	AACATAAATCA
chr6	5983542	5983543	chr6:5983543:C:T	rs6597173	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	6271380	6271381	chr6:6271381:G:T	rs13196774	G	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	6391139	6391140	chr6:6391140:C:G	rs6940363	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	6703867	6703868	chr6:6703868:A:G	rs201035	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	6736909	6736910	chr6:6736910:G:C	rs137971138	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	6736938	6736939	chr6:6736939:C:T	rs9504911	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	6841334	6841335	chr6:6841335:G:A	rs7741029	G	A	G	Hoxa9_MA0594.1	5	1	-	7.811441225681866	5.391302218352179	CTCATCTATCA
chr6	7074071	7074072	chr6:7074072:C:T	rs147912720	C	T	C	Hoxa9_MA0594.1	9	1	+	9.19220543602036	6.567492217436122	ACCATAAATCC
chr6	7314998	7314999	chr6:7314999:A:C	rs10080449	A	C	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	7315041	7315042	chr6:7315042:G:A	rs10080677	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	7340878	7340879	chr6:7340879:T:C	rs1555769	T	C	C	Hoxa9_MA0594.1	5	1	-	9.283125442814011	6.766981631017401	GCCATACATCA
chr6	7355284	7355285	chr6:7355285:C:T	rs2764075	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	7467446	7467447	chr6:7467447:G:A	rs2806204	G	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	7592905	7592906	chr6:7592906:C:T	rs2806223	C	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	7674641	7674642	chr6:7674642:A:G	rs2327014	A	G	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	7749738	7749739	chr6:7749739:T:G	rs17685208	T	G	T	Hoxa9_MA0594.1	6	1	-	8.01767889594621	4.780258147381148	ACAATGAATCA
chr6	7762995	7762996	chr6:7762996:C:T	rs34777872	C	T	c	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	7821644	7821645	chr6:7821645:A:T	rs79845371	A	T	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	7827106	7827107	chr6:7827107:G:A	rs7741946	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	7887900	7887901	chr6:7887901:C:T	rs7759451	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	7887934	7887935	chr6:7887935:C:T	rs89715	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	7908236	7908237	chr6:7908237:T:C	rs1225960	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	7954657	7954658	chr6:7954658:T:C	rs79727521	T	C	T	Hoxa9_MA0594.1	4	1	+	10.422554777021706	3.513799997706486	CCAATCAATCA
chr6	8101978	8101979	chr6:8101979:T:C	rs74471300	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	8102006	8102007	chr6:8102007:G:T	rs74575985	G	T	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	8434419	8434420	chr6:8434420:T:G	rs58929031	T	G	T	Hoxa9_MA0594.1	4	1	+	7.7868232361530945	0.8780684568378745	GGAATCAATCA
chr6	8434424	8434425	chr6:8434425:C:T	rs59964126	C	T	C	Hoxa9_MA0594.1	9	1	+	7.7868232361530945	5.162110017568856	GGAATCAATCA
chr6	8436224	8436225	chr6:8436225:G:T	rs554711554	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	9225570	9225571	chr6:9225571:T:A	rs145553420	T	A	T	Hoxa9_MA0594.1	6	1	-	9.764268392154055	6.923166631010907	GACATCAATCA
chr6	9564165	9564166	chr6:9564166:G:A	rs12195551	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	9564169	9564170	chr6:9564170:C:T	rs76373692	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	10112181	10112182	chr6:10112182:C:T	rs1207009	C	T	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	10147325	10147326	chr6:10147326:G:A	rs4710891	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	10202331	10202332	chr6:10202332:T:A	rs78447403	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	10202348	10202349	chr6:10202349:G:A	chr6:10202349:G:A	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	10236095	10236096	chr6:10236096:T:A	rs6456295	T	A	A	Hoxa9_MA0594.1	7	1	-	8.773111023127315	1.8701773494243947	CAAATAAATCA
chr6	10276215	10276216	chr6:10276216:T:C	rs9465760	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	10338259	10338260	chr6:10338260:A:G	rs4601120	A	G	A	Hoxa9_MA0594.1	2	1	+	9.929418333235837	4.527056316401199	GCAATAAATCT
chr6	10349691	10349692	chr6:10349692:C:T	rs13193174	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	10383998	10383999	chr6:10383999:A:T	rs572633	A	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	10451635	10451636	chr6:10451636:T:A	rs71561197	T	A	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	10463791	10463792	chr6:10463792:G:A	rs501436	G	A	G	Hoxa9_MA0594.1	9	1	-	7.811441225681866	5.186728007097628	CTCATCTATCA
chr6	10601462	10601463	chr6:10601463:G:T	rs76344834	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	10722085	10722086	chr6:10722086:T:C	rs2327308	T	C	C	Hoxa9_MA0594.1	4	1	+	7.8728260628999855	0.9640712835847656	GCCATCAATTT
chr6	10741927	10741928	chr6:10741928:C:T	rs524544	C	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	11088212	11088213	chr6:11088213:A:G	rs116495592	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	11094708	11094709	chr6:11094709:A:T	rs1314964258	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	11211244	11211245	chr6:11211245:G:A	rs151298952	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	11215869	11215870	chr6:11215870:A:C	rs10484450	A	C	A	Hoxa9_MA0594.1	6	1	+	8.59659271700956	5.359171968444499	AGCATAAATCA
chr6	11333450	11333451	chr6:11333451:T:C	rs4713432	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	11439409	11439410	chr6:11439410:T:A	rs16871350	T	A	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	11667799	11667800	chr6:11667800:C:T	rs79745705	C	T	T	Hoxa9_MA0594.1	5	1	+	8.306671999370346	5.886532992040658	CCCATCCATCA
chr6	11672299	11672300	chr6:11672300:T:C	rs1195540	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	11715109	11715110	chr6:11715110:T:C	rs369981545	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr6	11738982	11738983	chr6:11738983:G:T	rs210891	G	T	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	11876798	11876799	chr6:11876799:T:C	rs2206928	T	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	11978507	11978508	chr6:11978508:C:T	rs12204035	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	12017457	12017458	chr6:12017458:G:A	rs193017390	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	12017459	12017460	chr6:12017460:G:C	rs546165754	G	C	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr6	12150200	12150201	chr6:12150201:G:A	rs16872314	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	12172833	12172834	chr6:12172834:A:G	rs9380878	A	G	A	Hoxa9_MA0594.1	8	1	-	10.763810917546127	3.8905228674462373	ATCATAAATCA
chr6	12420704	12420705	chr6:12420705:C:T	rs1329138253	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	12512103	12512104	chr6:12512104:A:G	rs9369393	A	G	A	Hoxa9_MA0594.1	4	1	-	9.929418333235837	3.0206635539206164	GCAATAAATCT
chr6	12512111	12512112	chr6:12512112:A:G	rs9369394	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	12570565	12570566	chr6:12570566:T:C	rs78725675	T	C	T	Hoxa9_MA0594.1	4	1	+	10.004402379582464	3.0956476002672426	GCCATGAATCA
chr6	12648488	12648489	chr6:12648489:G:A	rs763480860	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	12762581	12762582	chr6:12762582:T:G	rs13217579	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	13188538	13188539	chr6:13188539:G:T	rs1150604	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	13279319	13279320	chr6:13279320:T:C	rs3817742	T	C	T	Hoxa9_MA0594.1	7	1	-	8.450866189019125	1.5479325153162042	GTCATCAATTA
chr6	13283970	13283971	chr6:13283971:C:T	rs435465	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	13283971	13283972	chr6:13283972:C:T	rs435466	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	13289859	13289860	chr6:13289860:G:A	rs76551156	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	13340125	13340126	chr6:13340126:G:A	rs576060169	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	13395378	13395379	chr6:13395379:A:G	rs500197	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	13548549	13548550	chr6:13548550:A:G	rs9474526	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	13575407	13575408	chr6:13575408:G:A	rs931433767	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	13575412	13575413	chr6:13575413:C:T	chr6:13575413:C:T	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	13575449	13575450	chr6:13575450:G:A	rs2804926	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	13771210	13771211	chr6:13771211:C:T	rs13219011	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	13871140	13871141	chr6:13871141:T:C	rs1204233	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	14016931	14016932	chr6:14016932:A:G	rs13194113	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	14016966	14016967	chr6:14016967:G:C	rs1999198	G	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	14026904	14026905	chr6:14026905:C:T	rs376383357	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	14055918	14055919	chr6:14055919:G:A	rs16874628	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	14142392	14142393	chr6:14142393:A:G	rs115645562	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	14286424	14286425	chr6:14286425:T:C	chr6:14286425:T:C	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	14317106	14317107	chr6:14317107:G:A	rs185448366	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	14573251	14573252	chr6:14573252:T:G	rs77569977	T	G	T	Hoxa9_MA0594.1	4	1	+	8.899082879431504	1.9903281001162816	AACATCAATCA
chr6	14665285	14665286	chr6:14665286:T:C	rs2092918	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	14736418	14736419	chr6:14736419:T:C	rs9396529	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	14792244	14792245	chr6:14792245:A:C	rs768543	A	C	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	14905291	14905292	chr6:14905292:C:G	rs402670	C	G	G	Hoxa9_MA0594.1	0	1	-	7.700782005789437	7.277745585011086	GTCCTAAATCA
chr6	14921343	14921344	chr6:14921344:G:C	rs767862843	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	14921347	14921348	chr6:14921348:C:T	rs148930316	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	14944844	14944845	chr6:14944845:C:A	rs2045223	C	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	15262779	15262780	chr6:15262780:G:A	rs10949290	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	15417937	15417938	chr6:15417938:C:G	rs115368595	C	G	c	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	15481147	15481148	chr6:15481148:T:C	rs2179167	T	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	15755386	15755387	chr6:15755387:A:G	rs1927579	A	G	A	Hoxa9_MA0594.1	4	1	-	10.507458459354975	3.5987036800397547	GTAATAAATCA
chr6	15829323	15829324	chr6:15829324:A:G	rs7745776	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	16174790	16174791	chr6:16174791:G:A	rs13206249	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	16174791	16174792	chr6:16174792:T:C	rs6906805	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	16174798	16174799	chr6:16174799:C:T	rs6922889	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	16197260	16197261	chr6:16197261:A:G	rs2142670	A	G	g	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	16239718	16239719	chr6:16239719:C:T	rs76905409	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	16423348	16423349	chr6:16423349:T:C	rs1543359	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	16514176	16514177	chr6:16514177:G:A	rs16878314	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	16658863	16658864	chr6:16658864:C:T	rs909786	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	16658899	16658900	chr6:16658900:T:A	rs760882	T	A	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	16776619	16776620	chr6:16776620:A:G	rs78585626	A	G	A	Hoxa9_MA0594.1	7	1	+	9.196147443905666	2.2932137702027453	GAAATAAATCA
chr6	17119288	17119289	chr6:17119289:T:C	rs11965937	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	17295940	17295941	chr6:17295941:A:G	rs9370972	A	G	A	Hoxa9_MA0594.1	8	1	-	8.082954538162921	1.2096664880630312	TCCATAAATCT
chr6	17297732	17297733	chr6:17297733:C:A	rs74365341	C	A	C	Hoxa9_MA0594.1	0	1	-	9.130625221022317	6.162623455035698	GCTATAAATCT
chr6	17397799	17397800	chr6:17397800:G:A	rs73367826	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	17473695	17473696	chr6:17473696:T:G	rs1320995	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	17478539	17478540	chr6:17478540:C:G	rs73375255	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	17821733	17821734	chr6:17821734:A:G	rs12205910	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	17851938	17851939	chr6:17851939:A:T	rs77900401	A	T	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	18165920	18165921	chr6:18165921:C:T	rs74954445	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	18371666	18371667	chr6:18371667:G:A	rs9885802	G	A	t	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	18371715	18371716	chr6:18371716:T:G	rs9885748	T	G	g	Hoxa9_MA0594.1	0	1	-	9.19220543602036	9.634354527964561	ACCATAAATCC
chr6	18381919	18381920	chr6:18381920:G:A	rs115037515	G	A	a	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	18405539	18405540	chr6:18405540:G:A	rs6924478	G	A	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	18486630	18486631	chr6:18486631:C:T	rs9383398	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	18976527	18976528	chr6:18976528:A:C	rs77257918	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	19013158	19013159	chr6:19013159:C:T	rs607237	C	T	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	19271364	19271365	chr6:19271365:C:T	rs113791389	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	19327886	19327887	chr6:19327887:G:A	rs7750685	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	19721449	19721450	chr6:19721450:T:A	rs6918737	T	A	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	19804874	19804875	chr6:19804875:A:C	chr6:19804875:A:C	A	C	A	Hoxa9_MA0594.1	3	1	+	8.45982798789041	4.531613563411169	CCAATGAATCA
chr6	19804889	19804890	chr6:19804890:G:C	rs369111289	G	C	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	19804893	19804894	chr6:19804894:G:A	rs116293473	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	20278849	20278850	chr6:20278850:A:C	rs75826536	A	C	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	20317643	20317644	chr6:20317644:A:G	rs76482305	A	G	A	Hoxa9_MA0594.1	5	1	-	8.655440400273676	11.075579407603364	GTCATTAATCA
chr6	20528602	20528603	chr6:20528603:G:A	rs9460517	G	A	a	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	20647751	20647752	chr6:20647752:T:C	rs6936199	T	C	t	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	20647754	20647755	chr6:20647755:A:C	rs6913126	A	C	a	Hoxa9_MA0594.1	8	1	-	9.452499902096816	4.497603972158348	AACATAAATCA
chr6	20647765	20647766	chr6:20647766:A:G	rs563389120	A	G	a	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	20847156	20847157	chr6:20847157:C:T	rs7742468	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	20990890	20990891	chr6:20990891:A:G	chr6:20990891:A:G	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	21078852	21078853	chr6:21078853:T:C	rs10080639	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	21167746	21167747	chr6:21167747:A:C	rs9368285	A	C	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	21281704	21281705	chr6:21281705:T:G	rs807839	T	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	21589212	21589213	chr6:21589213:T:G	chr6:21589213:T:G	T	G	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr6	21609403	21609404	chr6:21609404:G:A	rs7740142	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	21808891	21808892	chr6:21808892:C:T	rs529179530	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	21837133	21837134	chr6:21837134:G:A	rs79148278	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	21922327	21922328	chr6:21922328:G:A	rs12206540	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	21967733	21967734	chr6:21967734:G:A	rs114592800	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	21999127	21999128	chr6:21999128:C:T	rs186814768	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	22063216	22063217	chr6:22063217:G:A	chr6:22063217:G:A	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	22133535	22133536	chr6:22133536:G:T	rs77443438	G	T	G	Hoxa9_MA0594.1	0	1	+	12.520546191379072	9.552544425392455	GCCATAAATCA
chr6	22314292	22314293	chr6:22314293:T:C	rs2185590	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	22471494	22471495	chr6:22471495:A:G	rs76441448	A	G	A	Hoxa9_MA0594.1	10	1	-	7.643262731242535	6.649697375835908	GTCATGAATCT
chr6	22596276	22596277	chr6:22596277:G:A	rs73382749	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	22809313	22809314	chr6:22809314:G:C	rs2206340	G	C	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	23278187	23278188	chr6:23278188:A:G	rs73384831	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	23319816	23319817	chr6:23319817:T:C	rs2147855	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	23630889	23630890	chr6:23630890:G:T	rs17211240	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	23643032	23643033	chr6:23643033:T:C	rs2031390	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	23689115	23689116	chr6:23689116:C:A	rs17213333	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	24010035	24010036	chr6:24010036:G:A	rs9295612	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	24010113	24010114	chr6:24010114:G:C	rs1397845	G	C	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	24053160	24053161	chr6:24053161:T:C	rs9358745	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	24250008	24250009	chr6:24250009:C:G	rs72830843	C	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	24385503	24385504	chr6:24385504:C:T	rs793708	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	24468793	24468794	chr6:24468794:C:T	rs2817231	C	T	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	24669243	24669244	chr6:24669244:C:G	rs2223589	C	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	24930473	24930474	chr6:24930474:A:G	rs139666716	A	G	a	Hoxa9_MA0594.1	5	1	+	12.520546191379072	10.004402379582464	GCCATAAATCA
chr6	25026352	25026353	chr6:25026353:G:A	rs9356955	G	A	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	25062046	25062047	chr6:25062047:C:G	rs9379711	C	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	25219001	25219002	chr6:25219002:G:A	rs6939764	G	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	25265761	25265762	chr6:25265762:G:A	rs16890271	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	25311645	25311646	chr6:25311646:G:T	rs74390266	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	25910396	25910397	chr6:25910397:T:C	rs2181802	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr6	25925594	25925595	chr6:25925595:A:G	rs7770139	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	26027082	26027083	chr6:26027083:C:T	rs751486416	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	26109919	26109920	chr6:26109920:T:C	rs13206501	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	26206655	26206656	chr6:26206656:A:G	rs56220351	A	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	26286814	26286815	chr6:26286815:G:T	rs1124999	G	T	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	26354551	26354552	chr6:26354552:A:C	rs9379851	A	C	C	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	26365889	26365890	chr6:26365890:A:G	rs187574944	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	27062858	27062859	chr6:27062859:C:T	rs73401117	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	27133585	27133586	chr6:27133586:C:T	rs552827326	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	27275645	27275646	chr6:27275646:C:G	rs9357034	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	27424330	27424331	chr6:27424331:A:G	rs12528904	A	G	g	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	27568470	27568471	chr6:27568471:T:C	rs187625863	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr6	27727549	27727550	chr6:27727550:C:T	rs9348775	C	T	c	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	27816649	27816650	chr6:27816650:A:G	rs9295750	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	28383171	28383172	chr6:28383172:G:A	rs916232102	G	A	G	Hoxa9_MA0594.1	5	1	+	8.247667105749517	10.763810917546127	ATCATGAATCA
chr6	28383191	28383192	chr6:28383192:A:G	rs72854546	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	28607140	28607141	chr6:28607141:A:G	rs573490069	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	28735503	28735504	chr6:28735504:T:C	rs2893970	T	C	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	28995470	28995471	chr6:28995471:T:G	rs6456880	T	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	29268941	29268942	chr6:29268942:A:G	rs186042794	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	29466517	29466518	chr6:29466518:C:T	rs2107191	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	29563704	29563705	chr6:29563705:T:C	rs362528	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	29596708	29596709	chr6:29596709:T:G	rs28893514	T	G	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	29624867	29624868	chr6:29624868:T:C	rs28359982	T	C	T	Hoxa9_MA0594.1	7	1	-	8.787894669125532	1.8849609954226119	GTCATATATCA
chr6	29693678	29693679	chr6:29693679:A:T	rs2894113	A	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	29734165	29734166	chr6:29734166:T:C	rs7755571	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	29736622	29736623	chr6:29736623:T:C	rs1736913	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	29736665	29736666	chr6:29736666:C:T	rs9258207	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	29741456	29741457	chr6:29741457:C:T	rs2743951	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	29769785	29769786	chr6:29769786:A:G	rs1737030	A	G	G	Hoxa9_MA0594.1	8	1	-	8.209854543006394	1.3365664929065044	GCCATATATCT
chr6	29888470	29888471	chr6:29888471:T:C	rs1611612	T	C	-	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	29894310	29894311	chr6:29894311:A:G	rs1611548	A	G	-	Hoxa9_MA0594.1	1	1	-	9.08885592396711	9.980405685077507	ATAATCAATCA
chr6	29924562	29924563	chr6:29924563:C:G	rs9259805	C	G	-	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	30319449	30319450	chr6:30319450:A:G	rs181030896	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	30465066	30465067	chr6:30465067:A:G	rs2524173	A	G	g	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	30702922	30702923	chr6:30702923:A:C	rs2239886	A	C	C	Hoxa9_MA0594.1	7	1	+	7.615878323456167	2.631336769914668	CCCCTCAATCA
chr6	30728308	30728309	chr6:30728309:C:T	rs41270533	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	30769808	30769809	chr6:30769809:C:T	rs139458054	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	30769813	30769814	chr6:30769814:G:C	rs3095337	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	30769822	30769823	chr6:30769823:A:G	rs1045107331	A	G	A	Hoxa9_MA0594.1	7	1	+	8.612424164967203	1.709490491264282	GTCATCAATCC
chr6	30770264	30770265	chr6:30770265:C:T	rs9262182	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	30779305	30779306	chr6:30779306:T:C	rs73425726	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	30788115	30788116	chr6:30788116:C:A	rs16897900	C	A	C	Hoxa9_MA0594.1	2	1	+	10.057390948742912	8.93585297782921	GCCATAAATCC
chr6	30815451	30815452	chr6:30815452:T:C	rs114101140	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	30815464	30815465	chr6:30815465:G:A	rs9501489	G	A	g	Hoxa9_MA0594.1	9	1	-	9.929418333235837	7.304705114651599	GCAATAAATCT
chr6	30939623	30939624	chr6:30939624:C:T	rs75205812	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	31074830	31074831	chr6:31074831:T:G	rs2523881	T	G	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	31184030	31184031	chr6:31184031:A:C	rs9348855	A	C	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	31184032	31184033	chr6:31184033:G:A	rs117672584	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	31186483	31186484	chr6:31186484:G:A	rs7772153	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	31186484	31186485	chr6:31186485:T:C	rs7753892	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	31196446	31196447	chr6:31196447:C:G	rs9501070	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	31196457	31196458	chr6:31196458:T:C	rs3094611	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	31196485	31196486	chr6:31196486:A:G	rs150632192	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	31196493	31196494	chr6:31196494:G:A	rs6922994	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	31229515	31229516	chr6:31229516:C:T	rs3130942	C	T	T	Hoxa9_MA0594.1	9	1	+	8.510815797847973	5.886102579263734	ACAATCAATCT
chr6	31277183	31277184	chr6:31277184:G:A	rs116553115	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	31280656	31280657	chr6:31280657:A:G	rs9264758	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	31345085	31345086	chr6:31345086:G:C	rs2508002	G	C	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	31345086	31345087	chr6:31345087:C:A	rs2508001	C	A	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	31349834	31349835	chr6:31349835:T:G	rs2844587	T	G	-	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	31351889	31351890	chr6:31351890:G:A	rs2442727	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	31351919	31351920	chr6:31351920:A:G	rs9391847	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	31381833	31381834	chr6:31381834:A:G	rs9266713	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr6	31381837	31381838	chr6:31381838:G:A	rs9266714	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	31442024	31442025	chr6:31442025:A:T	rs115660274	A	T	-	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	31508356	31508357	chr6:31508357:A:G	rs3131635	A	G	a	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	32038539	32038540	chr6:32038540:C:T	rs6468	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	32038559	32038560	chr6:32038560:C:A	rs6464	C	A	C	Hoxa9_MA0594.1	2	1	+	7.2334010995627285	6.111863128649026	CCCATCTATCT
chr6	32058479	32058480	chr6:32058480:T:C	rs3130285	T	C	c	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	32462584	32462585	chr6:32462585:C:G	rs4428528	C	G	.	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	32623212	32623213	chr6:32623213:T:C	rs35399661	T	C	.	Hoxa9_MA0594.1	8	1	+	8.848095527589834	1.9748074774899445	GACATAAATCT
chr6	32623223	32623224	chr6:32623224:A:G	rs34136716	A	G	.	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	32635458	32635459	chr6:32635459:T:A	rs9272260	T	A	.	Hoxa9_MA0594.1	5	1	+	8.68180464866152	11.655360678656521	ACCATTAATCA
chr6	32635464	32635465	chr6:32635465:G:A	rs9272261	G	A	.	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	32665935	32665936	chr6:32665936:A:G	rs9274477	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	32665966	32665967	chr6:32665967:C:T	rs9274478	C	T	c	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	32799313	32799314	chr6:32799314:G:T	rs2621371	G	T	t	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	33057608	33057609	chr6:33057609:G:A	rs17220829	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	33092018	33092019	chr6:33092019:A:G	rs2281389	A	G	A	Hoxa9_MA0594.1	3	1	+	8.18560062555707	5.2038041981482115	ACCATAAAACA
chr6	33144618	33144619	chr6:33144619:T:C	rs114350520	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	33271980	33271981	chr6:33271981:A:G	rs191951482	A	G	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	33347374	33347375	chr6:33347375:A:G	rs583129	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	33416559	33416560	chr6:33416560:C:T	rs1337213550	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	33791923	33791924	chr6:33791924:T:A	rs9394168	T	A	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	34072042	34072043	chr6:34072043:T:C	rs111209646	T	C	-	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	34100014	34100015	chr6:34100015:T:C	rs9380406	T	C	T	Hoxa9_MA0594.1	4	1	+	8.232403979495325	1.3236492001801046	CTCATTAATCA
chr6	34227233	34227234	chr6:34227234:G:T	rs1776897	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	34425497	34425498	chr6:34425498:G:C	rs28671566	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	34425498	34425499	chr6:34425499:G:A	rs73744899	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	34448571	34448572	chr6:34448572:G:A	rs12529603	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	34592515	34592516	chr6:34592516:G:A	rs205266	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	35034739	35034740	chr6:35034740:A:G	rs2689093	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	35060036	35060037	chr6:35060037:G:C	rs820086	G	C	C	Hoxa9_MA0594.1	5	1	-	7.632183602891756	5.66945681376046	ACCATCAAACA
chr6	35558812	35558813	chr6:35558813:C:A	rs9470059	C	A	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	35601784	35601785	chr6:35601785:A:G	rs16878812	A	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	36018924	36018925	chr6:36018925:C:G	rs851036	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	36510148	36510149	chr6:36510149:A:G	rs10947609	A	G	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	36775543	36775544	chr6:36775544:T:C	rs236421	T	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	36810446	36810447	chr6:36810447:T:C	rs9462227	T	C	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	36920382	36920383	chr6:36920383:T:A	rs13192293	T	A	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	36944726	36944727	chr6:36944727:A:G	rs1887763	A	G	G	Hoxa9_MA0594.1	3	1	+	7.0122332387752895	4.030436811366433	GCCATCAAGCA
chr6	36973028	36973029	chr6:36973029:T:C	rs831506	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	37005689	37005690	chr6:37005690:A:G	rs542216976	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	37177118	37177119	chr6:37177119:A:G	rs9380650	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	37210985	37210986	chr6:37210986:C:T	rs76448868	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	37211009	37211010	chr6:37211010:T:C	rs1150788	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	37241840	37241841	chr6:37241841:C:T	rs55914827	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	37315093	37315094	chr6:37315094:T:G	chr6:37315094:T:G	T	G	T	Hoxa9_MA0594.1	1	1	+	11.075579407603364	8.908361207066799	GTCATCAATCA
chr6	37315099	37315100	chr6:37315100:A:G	rs73732933	A	G	A	Hoxa9_MA0594.1	7	1	+	11.075579407603364	4.172645733900443	GTCATCAATCA
chr6	37484214	37484215	chr6:37484215:T:C	rs78862533	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	37490763	37490764	chr6:37490764:A:G	rs138568659	A	G	A	Hoxa9_MA0594.1	7	1	+	6.52217749866874	-0.3807561750341799	GCCGTCAATCC
chr6	37517071	37517072	chr6:37517072:C:T	rs73730780	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	37973183	37973184	chr6:37973184:G:A	rs11756030	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	38169161	38169162	chr6:38169162:C:A	rs57243891	C	A	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	38183866	38183867	chr6:38183867:C:T	rs79334662	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	38413556	38413557	chr6:38413557:C:T	rs2745380	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	39180445	39180446	chr6:39180446:G:A	rs186719319	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	39180463	39180464	chr6:39180464:C:T	rs13213552	C	T	C	Hoxa9_MA0594.1	0	1	+	8.62774971750127	6.082784372293002	CCCATAAAACA
chr6	39213330	39213331	chr6:39213331:C:T	chr6:39213331:C:T	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr6	39294074	39294075	chr6:39294075:C:T	rs2815061	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	39470693	39470694	chr6:39470694:C:G	rs28533484	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	39567234	39567235	chr6:39567235:C:G	rs79834553	C	G	c	Hoxa9_MA0594.1	0	1	+	9.080937505299248	9.503973926077597	CCCATCAATCC
chr6	40337554	40337555	chr6:40337555:G:A	rs12530143	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	40341198	40341199	chr6:40341199:A:G	rs9471314	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	40393741	40393742	chr6:40393742:C:G	rs1991873	C	G	G	Hoxa9_MA0594.1	0	1	-	8.53481249235293	8.11177607157458	GCCATGAATCT
chr6	40393751	40393752	chr6:40393752:C:A	rs56084097	C	A	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	40439392	40439393	chr6:40439393:G:A	rs1865255	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	40477494	40477495	chr6:40477495:G:A	rs16893656	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	40600016	40600017	chr6:40600017:C:G	rs75981274	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	40763211	40763212	chr6:40763212:C:T	rs117449200	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	40849773	40849774	chr6:40849774:C:T	rs116559647	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	40983806	40983807	chr6:40983807:G:A	rs7743897	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	41471510	41471511	chr6:41471511:T:C	rs12528612	T	C	T	Hoxa9_MA0594.1	7	1	-	10.845591197800056	3.942657524097136	GCAATCAATCA
chr6	41560736	41560737	chr6:41560737:G:A	rs776090519	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	41562939	41562940	chr6:41562940:C:G	rs186816008	C	G	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	41908596	41908597	chr6:41908597:C:T	rs3806113	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	42007313	42007314	chr6:42007314:G:A	rs118103136	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	42013280	42013281	chr6:42013281:C:T	rs115139943	C	T	C	Hoxa9_MA0594.1	5	1	-	8.689816197693718	11.205960009490326	CTCATGAATCA
chr6	42139373	42139374	chr6:42139374:C:T	rs17624071	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	42139381	42139382	chr6:42139382:T:C	rs202152527	T	C	T	Hoxa9_MA0594.1	1	1	+	9.642272946632424	10.53382270774282	ATAATAAATCA
chr6	42198048	42198049	chr6:42198049:T:C	rs114119027	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	42338683	42338684	chr6:42338684:C:A	rs260271	C	A	C	Hoxa9_MA0594.1	0	1	-	9.165841187632518	6.197839421645898	GTCATAAATCC
chr6	42345882	42345883	chr6:42345883:C:G	rs113123531	C	G	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	42356853	42356854	chr6:42356854:G:C	rs140916487	G	C	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	42747735	42747736	chr6:42747736:C:T	rs75651354	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	42864823	42864824	chr6:42864824:T:G	rs144252837	T	G	T	Hoxa9_MA0594.1	4	1	+	9.581365958804113	2.672611179488892	CCCATGAATCA
chr6	43396304	43396305	chr6:43396305:C:T	rs77241311	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	43422180	43422181	chr6:43422181:A:T	rs2396027	A	T	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	43706956	43706957	chr6:43706957:T:C	rs148855758	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	43728757	43728758	chr6:43728758:T:C	chr6:43728758:T:C	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	43762017	43762018	chr6:43762018:G:T	rs1109324	G	T	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	43817517	43817518	chr6:43817518:C:T	rs35349911	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	43931790	43931791	chr6:43931791:C:T	rs864430	C	T	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	44028977	44028978	chr6:44028978:C:G	rs80331336	C	G	c	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	44105125	44105126	chr6:44105126:G:A	rs7743249	G	A	a	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	44221177	44221178	chr6:44221178:C:T	chr6:44221178:C:T	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	44247802	44247803	chr6:44247803:C:T	rs139381738	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	44541598	44541599	chr6:44541599:C:T	rs547894178	C	T	C	Hoxa9_MA0594.1	0	1	-	7.838158659038301	6.97297314631575	GTCATCCATCA
chr6	44576223	44576224	chr6:44576224:T:A	rs184475	T	A	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	44576253	44576254	chr6:44576254:G:C	rs112570749	G	C	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	44625447	44625448	chr6:44625448:C:G	rs4090309	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	44660522	44660523	chr6:44660523:T:G	rs116274798	T	G	t	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	44661838	44661839	chr6:44661839:A:G	rs4257850	A	G	a	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	44709587	44709588	chr6:44709588:C:T	rs227822	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	44709594	44709595	chr6:44709595:G:A	rs227823	G	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	44723964	44723965	chr6:44723965:C:T	rs1283948	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	44723965	44723966	chr6:44723966:A:G	rs227843	A	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	44779994	44779995	chr6:44779995:C:T	rs1342370	C	T	T	Hoxa9_MA0594.1	3	1	-	7.440758349612847	10.422554777021706	CCAGTCAATCA
chr6	45036795	45036796	chr6:45036796:T:C	rs9369529	T	C	T	Hoxa9_MA0594.1	1	1	+	8.044303216718815	8.93585297782921	GTAATAAATCC
chr6	45075819	45075820	chr6:45075820:T:A	rs2396380	T	A	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	45188044	45188045	chr6:45188045:C:A	rs1797145	C	A	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	45251961	45251962	chr6:45251962:T:C	rs10456548	T	C	T	Hoxa9_MA0594.1	0	1	+	8.431006454478752	10.97597179968702	TCAATAAATCA
chr6	45512761	45512762	chr6:45512762:G:C	rs62400365	G	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	45512778	45512779	chr6:45512779:A:T	rs62400366	A	T	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	45611166	45611167	chr6:45611167:C:T	rs7760394	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	45949512	45949513	chr6:45949513:T:C	rs141231603	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	46039838	46039839	chr6:46039839:A:C	chr6:46039839:A:C	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	46043110	46043111	chr6:46043111:C:T	rs74960891	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	46046946	46046947	chr6:46046947:A:G	rs16874161	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	46186772	46186773	chr6:46186773:T:C	rs9381431	T	C	C	Hoxa9_MA0594.1	8	1	+	8.614832151347091	1.7415441012472017	CTAATAAATCT
chr6	46217662	46217663	chr6:46217663:G:C	rs7754989	G	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	46340049	46340050	chr6:46340050:T:A	rs6934148	T	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	46378525	46378526	chr6:46378526:T:C	rs9395183	T	C	T	Hoxa9_MA0594.1	4	1	+	7.390499134806127	0.4817443554909066	CCCATACATCT
chr6	46379049	46379050	chr6:46379050:G:A	rs578164330	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	46893873	46893874	chr6:46893874:G:A	chr6:46893874:G:A	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	46912558	46912559	chr6:46912559:G:A	rs220711	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	46979103	46979104	chr6:46979104:C:T	rs6922176	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	47058196	47058197	chr6:47058197:C:G	rs1226522	C	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr6	47058222	47058223	chr6:47058223:C:T	rs1226523	C	T	T	Hoxa9_MA0594.1	0	1	-	9.037868572125442	8.17268305940289	GTAATAAATCT
chr6	47147417	47147418	chr6:47147418:C:T	rs12206787	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	47169769	47169770	chr6:47169770:G:A	rs11755212	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	47195276	47195277	chr6:47195277:C:T	rs9473027	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	47195285	47195286	chr6:47195286:T:C	rs76480727	T	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	47301246	47301247	chr6:47301247:C:G	rs2017424	C	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	47731635	47731636	chr6:47731636:T:A	rs79581367	T	A	T	Hoxa9_MA0594.1	5	1	-	8.581246790906087	5.607690760911086	CTCATAAATTA
chr6	47731660	47731661	chr6:47731661:A:T	rs1854526	A	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	48736299	48736300	chr6:48736300:C:T	rs4316002	C	T	C	Hoxa9_MA0594.1	0	1	-	8.93585297782921	8.07066746510666	GCAATAAATCC
chr6	48765914	48765915	chr6:48765915:T:G	rs2490128	T	G	G	Hoxa9_MA0594.1	3	1	-	8.425059106811483	4.4968446823322425	CACATAAATCT
chr6	49387131	49387132	chr6:49387132:T:C	rs6903158	T	C	C	Hoxa9_MA0594.1	7	1	-	8.729708420148697	1.826774746445777	GCCATCCATCA
chr6	50207965	50207966	chr6:50207966:C:T	rs9395563	C	T	t	Hoxa9_MA0594.1	3	1	-	7.994175372278161	10.97597179968702	CCAGTAAATCA
chr6	50272579	50272580	chr6:50272580:T:A	rs4143783	T	A	T	Hoxa9_MA0594.1	4	1	+	9.506381912457487	2.597627133142266	CCAATAAATCT
chr6	50849827	50849828	chr6:50849828:C:T	rs35965172	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	51407695	51407696	chr6:51407696:T:G	rs6940087	T	G	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	51644632	51644633	chr6:51644633:C:A	rs2661504	C	A	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	51805992	51805993	chr6:51805993:G:A	rs6941078	G	A	g	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	52124921	52124922	chr6:52124922:A:G	rs140657056	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	52224404	52224405	chr6:52224405:T:A	rs6458821	T	A	T	Hoxa9_MA0594.1	3	1	-	8.306671999370346	1.4639353567626583	CCCATCCATCA
chr6	52224414	52224415	chr6:52224415:C:T	rs6458822	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	52340672	52340673	chr6:52340673:C:A	rs12665711	C	A	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	52419446	52419447	chr6:52419447:T:C	rs78157248	T	C	T	Hoxa9_MA0594.1	7	1	-	8.638788413355046	1.7358547396521267	ACCATCAATCC
chr6	52736039	52736040	chr6:52736040:C:T	rs4631283	C	T	C	Hoxa9_MA0594.1	9	1	+	9.503973926077597	6.8792607074933585	GCCATCAATCC
chr6	52808588	52808589	chr6:52808589:T:G	rs72936066	T	G	t	Hoxa9_MA0594.1	4	1	+	7.6696269796303795	0.760872200315158	ACCATGAATCT
chr6	52808589	52808590	chr6:52808590:G:T	rs11961624	G	T	g	Hoxa9_MA0594.1	5	1	+	7.6696269796303795	7.212214761431986	ACCATGAATCT
chr6	53062461	53062462	chr6:53062462:T:C	rs117842514	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	53258741	53258742	chr6:53258742:T:C	rs78510520	T	C	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	53309408	53309409	chr6:53309409:C:T	rs9370192	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	53382673	53382674	chr6:53382674:G:A	rs75553765	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	53447396	53447397	chr6:53447397:A:C	rs77001899	A	C	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	53735909	53735910	chr6:53735910:T:C	rs7759593	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	54031356	54031357	chr6:54031357:A:G	rs1325833	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	54515147	54515148	chr6:54515148:G:T	rs4715462	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	54602468	54602469	chr6:54602469:A:G	rs1951694	A	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	54719546	54719547	chr6:54719547:A:C	rs12527124	A	C	A	Hoxa9_MA0594.1	1	1	-	8.007749574707272	5.840531374170706	GTCATCAATAA
chr6	54801444	54801445	chr6:54801445:A:C	rs4715482	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	54801959	54801960	chr6:54801960:T:G	rs116488764	T	G	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	55080290	55080291	chr6:55080291:G:C	rs34005409	G	C	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	55142813	55142814	chr6:55142814:C:T	rs9475166	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	55400165	55400166	chr6:55400166:C:T	rs6918921	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	55524552	55524553	chr6:55524553:T:A	rs6936172	T	A	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	55557819	55557820	chr6:55557820:C:T	rs3925003	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	55754798	55754799	chr6:55754799:C:G	rs189098561	C	G	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	55869119	55869120	chr6:55869120:T:G	chr6:55869120:T:G	T	G	T	Hoxa9_MA0594.1	6	1	-	8.561166597372587	5.323745848807524	GTCATAAATAA
chr6	55916255	55916256	chr6:55916256:T:A	rs76830184	T	A	T	Hoxa9_MA0594.1	2	1	+	9.15524832447614	9.95404143668966	GTTATCAATCA
chr6	55951437	55951438	chr6:55951438:G:A	rs12189860	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	56022475	56022476	chr6:56022476:A:G	rs4712111	A	G	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	56144783	56144784	chr6:56144784:A:G	chr6:56144784:A:G	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	56297672	56297673	chr6:56297673:C:A	rs13202635	C	A	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	56361765	56361766	chr6:56361766:G:A	rs10948999	G	A	-	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	56695906	56695907	chr6:56695907:C:A	rs116619847	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	56840670	56840671	chr6:56840671:C:T	rs115007167	C	T	C	Hoxa9_MA0594.1	2	1	+	8.58753084576043	6.667199762633208	ACCATAAATAA
chr6	57013474	57013475	chr6:57013475:T:A	rs56059696	T	A	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	57150251	57150252	chr6:57150252:A:G	rs72867059	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	57283775	57283776	chr6:57283776:T:C	rs1330632	T	C	C	Hoxa9_MA0594.1	4	1	+	7.541247136946303	0.6324923576310819	GCCATGAATCC
chr6	57302902	57302903	chr6:57302903:T:C	rs6459186	T	C	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	57489878	57489879	chr6:57489879:G:A	rs113298867	G	A	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	60269777	60269778	chr6:60269778:T:C	rs1440929454	T	C	.	Hoxa9_MA0594.1	7	1	-	8.74080400765128	1.837870333948359	ATCATCAATCT
chr6	60371825	60371826	chr6:60371826:G:A	rs4715712	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	60732836	60732837	chr6:60732837:C:A	rs960320	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	62763712	62763713	chr6:62763713:T:C	rs6942234	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	63804493	63804494	chr6:63804494:A:G	rs569258491	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	63927171	63927172	chr6:63927172:C:A	rs1016380	C	A	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	63927171	63927172	chr6:63927172:C:T	chr6:63927172:C:T	C	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	63927172	63927173	chr6:63927173:G:A	rs9450379	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	64432049	64432050	chr6:64432050:G:A	rs1338829	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	64538971	64538972	chr6:64538972:A:G	rs35623328	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	64955604	64955605	chr6:64955605:A:G	rs1380125459	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	65363015	65363016	chr6:65363016:T:C	rs9445524	T	C	T	Hoxa9_MA0594.1	8	1	+	7.700782005789437	0.827493955689548	GTCCTAAATCA
chr6	65447658	65447659	chr6:65447659:C:G	rs12190548	C	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	65706678	65706679	chr6:65706679:T:C	rs116431337	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr6	65987763	65987764	chr6:65987764:G:T	chr6:65987764:G:T	G	T	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	66336370	66336371	chr6:66336371:A:G	rs7750608	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	66410925	66410926	chr6:66410926:A:C	rs62416334	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	67724053	67724054	chr6:67724054:T:A	rs112657998	T	A	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	67821709	67821710	chr6:67821710:T:C	rs7750694	T	C	t	Hoxa9_MA0594.1	5	1	-	9.294221030316594	6.778077218519983	ATCATAAATCT
chr6	68011113	68011114	chr6:68011114:T:C	rs56281061	T	C	T	Hoxa9_MA0594.1	10	1	+	8.53481249235293	7.541247136946303	GCCATGAATCT
chr6	68011128	68011129	chr6:68011129:C:T	rs9346112	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	68883474	68883475	chr6:68883475:T:C	rs28594921	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	69020106	69020107	chr6:69020107:A:G	rs3757048	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	69815786	69815787	chr6:69815787:A:G	rs13195232	A	G	A	Hoxa9_MA0594.1	10	1	+	8.219694000462	1.582921014709231	CAAATCAATCA
chr6	70111028	70111029	chr6:70111029:A:C	rs941862	A	C	a	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	70348037	70348038	chr6:70348038:C:T	rs1812988	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	71247801	71247802	chr6:71247802:C:A	rs10755550	C	A	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	71291452	71291453	chr6:71291453:C:T	rs1407595	C	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	71513249	71513250	chr6:71513250:A:T	rs73747164	A	T	A	Hoxa9_MA0594.1	5	1	+	9.115713343191864	6.142157313196861	CCCGTAAATCA
chr6	72181620	72181621	chr6:72181621:A:C	rs2496506	A	C	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	72282379	72282380	chr6:72282380:G:A	rs7738408	G	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	72282392	72282393	chr6:72282393:C:G	rs77691751	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	72788223	72788224	chr6:72788224:A:G	rs9446754	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	73326775	73326776	chr6:73326776:C:T	rs12662261	C	T	c	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	73326796	73326797	chr6:73326797:T:A	rs77915765	T	A	t	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	73614969	73614970	chr6:73614970:G:A	rs615052	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	73680667	73680668	chr6:73680668:C:G	rs4544874	C	G	g	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	73680698	73680699	chr6:73680699:G:A	rs10943122	G	A	g	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	73807628	73807629	chr6:73807629:G:A	rs4708090	G	A	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	73980685	73980686	chr6:73980686:G:T	rs113885978	G	T	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	74075560	74075561	chr6:74075561:G:A	rs77437535	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	74187344	74187345	chr6:74187345:A:G	rs1934022	A	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	75397977	75397978	chr6:75397978:T:C	rs145048796	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	75527707	75527708	chr6:75527708:C:T	rs35402776	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	76000758	76000759	chr6:76000759:C:A	rs76445500	C	A	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	76000759	76000760	chr6:76000760:C:T	rs79103317	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	76043594	76043595	chr6:76043595:T:C	rs720155	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	76439073	76439074	chr6:76439074:T:G	rs9341576	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	76708891	76708892	chr6:76708892:A:C	rs1350405	A	C	C	Hoxa9_MA0594.1	1	1	-	8.159236377169226	5.9920181766326595	GTCATAAAACA
chr6	76708896	76708897	chr6:76708897:G:T	rs12523833	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	77333755	77333756	chr6:77333756:A:G	rs79425885	A	G	A	Hoxa9_MA0594.1	3	1	+	9.581365958804113	6.599569531395254	CCCATGAATCA
chr6	77504503	77504504	chr6:77504504:A:T	rs1419086	A	T	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	77849016	77849017	chr6:77849017:G:T	rs4056845	G	T	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	77894394	77894395	chr6:77894395:A:T	rs9443485	A	T	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	78156180	78156181	chr6:78156181:G:C	rs9361376	G	C	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	78607323	78607324	chr6:78607324:G:T	rs147820460	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	79426811	79426812	chr6:79426812:A:G	rs80289594	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	79431359	79431360	chr6:79431360:C:T	rs12213051	C	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	79469605	79469606	chr6:79469606:C:G	rs2575204	C	G	G	Hoxa9_MA0594.1	0	1	-	9.112852618472068	8.689816197693718	GTCATGAATCA
chr6	79603352	79603353	chr6:79603353:A:G	rs115768626	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	79615146	79615147	chr6:79615147:T:G	rs4706099	T	G	T	Hoxa9_MA0594.1	2	1	-	7.959399534385545	9.080937505299248	CCAATCAATCC
chr6	79763451	79763452	chr6:79763452:C:T	rs6936094	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	80332162	80332163	chr6:80332163:A:G	rs1988589	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	80440360	80440361	chr6:80440361:A:G	rs9352838	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	80522080	80522081	chr6:80522081:C:G	rs541841	C	G	C	Hoxa9_MA0594.1	10	1	+	7.5836428429503755	3.410025099833767	GCTATCAATCC
chr6	80556994	80556995	chr6:80556995:C:T	rs72903917	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	80728496	80728497	chr6:80728497:G:A	rs1890597	G	A	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	80941236	80941237	chr6:80941237:C:T	rs572622	C	T	T	Hoxa9_MA0594.1	2	1	+	9.895832972794834	7.975501889667612	GCCATAAATTA
chr6	81031739	81031740	chr6:81031740:G:A	rs13220122	G	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	81241282	81241283	chr6:81241283:G:A	rs10943784	G	A	G	Hoxa9_MA0594.1	0	1	-	9.341231971375704	6.796266626167434	CACATCAATCA
chr6	81241287	81241288	chr6:81241288:A:G	rs75563712	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	81594495	81594496	chr6:81594496:G:A	rs6910041	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr6	81962437	81962438	chr6:81962438:A:G	rs185603259	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	82017563	82017564	chr6:82017564:T:G	rs757589791	T	G	T	Hoxa9_MA0594.1	8	1	+	8.189387744188851	3.234491814250384	CTCATCAATCC
chr6	82243535	82243536	chr6:82243536:T:C	rs76935622	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	82397550	82397551	chr6:82397551:G:A	rs114019822	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	82410790	82410791	chr6:82410791:C:T	rs12211875	C	T	C	Hoxa9_MA0594.1	2	1	+	8.66099466428206	6.740663581154836	TTCATAAATCA
chr6	82481489	82481490	chr6:82481490:A:G	rs2983865	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	82494674	82494675	chr6:82494675:G:C	rs6934417	G	C	G	Hoxa9_MA0594.1	5	1	-	10.497539281484224	8.53481249235293	GCCATCAATCT
chr6	82521614	82521615	chr6:82521615:C:T	rs35301711	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	82971059	82971060	chr6:82971060:A:C	rs293483	A	C	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	83184662	83184663	chr6:83184663:T:C	rs628629	T	C	C	Hoxa9_MA0594.1	4	1	+	9.256408009457576	2.347653230142356	CCCATATATCA
chr6	84193506	84193507	chr6:84193507:G:C	rs9444146	G	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	84521840	84521841	chr6:84521841:T:C	rs79343088	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	84718759	84718760	chr6:84718760:C:T	rs9344421	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	84772877	84772878	chr6:84772878:C:T	rs858735	C	T	C	Hoxa9_MA0594.1	1	1	+	11.655360678656521	10.763810917546127	ACCATAAATCA
chr6	84973686	84973687	chr6:84973687:G:A	rs962054	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	85059100	85059101	chr6:85059101:A:G	rs16875611	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	85063172	85063173	chr6:85063173:A:G	rs4707118	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	85063178	85063179	chr6:85063179:A:G	rs66513010	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	85650709	85650710	chr6:85650710:A:G	rs9351065	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	85840327	85840328	chr6:85840328:C:T	rs1268930603	C	T	c	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	86016871	86016872	chr6:86016872:G:C	rs1337853	G	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	86253118	86253119	chr6:86253119:T:C	rs3013792	T	C	C	Hoxa9_MA0594.1	10	1	-	11.205960009490326	4.569187023737557	CTCATAAATCA
chr6	87129378	87129379	chr6:87129379:A:G	rs9344677	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	87297260	87297261	chr6:87297261:G:C	rs56678817	G	C	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	87424792	87424793	chr6:87424793:T:C	rs6454622	T	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	87578415	87578416	chr6:87578416:C:A	rs4132445	C	A	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	87869841	87869842	chr6:87869842:G:A	rs4129674	G	A	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	88398270	88398271	chr6:88398271:C:T	rs1408699	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	88699372	88699373	chr6:88699373:C:T	rs2756362	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	89022933	89022934	chr6:89022934:A:G	rs112712739	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	89146997	89146998	chr6:89146998:C:T	rs989454	C	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	89350266	89350267	chr6:89350267:G:A	rs541813124	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	89456888	89456889	chr6:89456889:A:G	rs58623344	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	89952429	89952430	chr6:89952430:C:T	rs530250136	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	90039142	90039143	chr6:90039143:G:A	rs371855701	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	90370480	90370481	chr6:90370481:C:T	rs7741944	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	90462308	90462309	chr6:90462309:C:T	rs791043	C	T	T	Hoxa9_MA0594.1	1	1	+	11.39900822046537	10.507458459354975	GCAATAAATCA
chr6	90477640	90477641	chr6:90477641:A:G	rs1221631	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	90679148	90679149	chr6:90679149:T:C	rs2750423	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	90719957	90719958	chr6:90719958:G:A	rs113554083	G	A	G	Hoxa9_MA0594.1	0	1	+	8.08407129645524	7.21888578373269	GCTATGAATCA
chr6	90955014	90955015	chr6:90955015:C:T	rs62408492	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	90993898	90993899	chr6:90993899:C:T	rs13207757	C	T	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	91132298	91132299	chr6:91132299:C:T	rs112565235	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	91266630	91266631	chr6:91266631:A:G	rs7759032	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	91751644	91751645	chr6:91751645:T:G	rs9451791	T	G	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr6	91962333	91962334	chr6:91962334:T:C	rs79455867	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	92667906	92667907	chr6:92667907:G:A	rs1418168	G	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	93261044	93261045	chr6:93261045:G:A	rs74914275	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	93413634	93413635	chr6:93413635:T:C	rs499034	T	C	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	93423627	93423628	chr6:93423628:A:G	rs75173887	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	93760710	93760711	chr6:93760711:A:G	rs1360909	A	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	93993297	93993298	chr6:93993298:G:A	rs1872991	G	A	g	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	94456773	94456774	chr6:94456774:T:C	rs9360067	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	94537712	94537713	chr6:94537713:A:G	rs80146795	A	G	A	Hoxa9_MA0594.1	5	1	+	8.557906459322226	6.041762647525615	GCAATATATCA
chr6	95650353	95650354	chr6:95650354:G:C	rs6935316	G	C	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	95974154	95974155	chr6:95974155:C:T	rs673044	C	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	96164039	96164040	chr6:96164040:A:C	rs12205400	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	96301185	96301186	chr6:96301186:A:G	rs78085201	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	96451239	96451240	chr6:96451240:G:T	rs28623445	G	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	97059748	97059749	chr6:97059749:G:A	rs76421537	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	97102537	97102538	chr6:97102538:G:A	rs760829	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	97125301	97125302	chr6:97125302:C:T	rs9400583	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	97176880	97176881	chr6:97176881:C:G	rs6904552	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	97216835	97216836	chr6:97216836:T:G	rs6929533	T	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	97216853	97216854	chr6:97216854:C:T	rs9374430	C	T	C	Hoxa9_MA0594.1	0	1	-	11.39900822046537	10.53382270774282	GCAATAAATCA
chr6	97438601	97438602	chr6:97438602:C:T	rs67506144	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	97461074	97461075	chr6:97461075:A:C	rs62422084	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	98463199	98463200	chr6:98463200:C:A	chr6:98463200:C:A	C	A	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	98590553	98590554	chr6:98590554:G:A	rs12663996	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	98845187	98845188	chr6:98845188:G:A	rs1048701031	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	99050344	99050345	chr6:99050345:C:T	rs149794385	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	99822722	99822723	chr6:99822723:G:A	rs4840090	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	100706542	100706543	chr6:100706543:T:A	rs12199888	T	A	T	Hoxa9_MA0594.1	4	1	+	8.34024025881841	1.431485479503189	GGAATAAATCA
chr6	100828821	100828822	chr6:100828822:C:G	rs2895068	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	101014046	101014047	chr6:101014047:T:C	rs17801075	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	101203740	101203741	chr6:101203741:T:A	rs2764271	T	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	101204215	101204216	chr6:101204216:G:A	rs6900880	G	A	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr6	101313097	101313098	chr6:101313098:A:G	rs117524874	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr6	101398677	101398678	chr6:101398678:G:A	rs2852512	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	101513144	101513145	chr6:101513145:C:T	rs6917120	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	101909255	101909256	chr6:101909256:A:T	rs9377321	A	T	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	102258104	102258105	chr6:102258105:C:T	rs66958830	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	102408162	102408163	chr6:102408163:A:G	rs12660340	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	102474766	102474767	chr6:102474767:A:G	rs601907	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	103326914	103326915	chr6:103326915:G:A	rs12207319	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	103650271	103650272	chr6:103650272:C:T	rs72983260	C	T	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	103715532	103715533	chr6:103715533:T:A	rs77613140	T	A	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	103748531	103748532	chr6:103748532:T:G	rs12206482	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	103864874	103864875	chr6:103864875:G:C	rs9322776	G	C	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	104538591	104538592	chr6:104538592:C:A	rs9377650	C	A	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	104566391	104566392	chr6:104566392:C:T	rs78660494	C	T	c	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	104956322	104956323	chr6:104956323:G:A	rs12194974	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	105042099	105042100	chr6:105042100:A:C	rs73771343	A	C	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	105513902	105513903	chr6:105513903:C:T	rs73520067	C	T	C	Hoxa9_MA0594.1	1	1	+	8.729708420148697	7.838158659038301	GCCATCCATCA
chr6	105604139	105604140	chr6:105604140:C:T	rs149129803	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	105692845	105692846	chr6:105692846:G:A	rs145168100	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	105909123	105909124	chr6:105909124:T:G	rs938338732	T	G	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	105930171	105930172	chr6:105930172:C:T	rs117378100	C	T	c	Hoxa9_MA0594.1	1	1	+	7.656437520341079	6.7648877592306835	GCCATCTATCT
chr6	106339579	106339580	chr6:106339580:T:C	rs1023538283	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	106450918	106450919	chr6:106450919:C:T	rs2236072	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	106450923	106450924	chr6:106450924:G:A	rs9400006	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	106522045	106522046	chr6:106522046:T:G	rs142608884	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr6	106534581	106534582	chr6:106534582:G:A	rs72941307	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	106534612	106534613	chr6:106534613:T:C	rs1462147	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	106626945	106626946	chr6:106626946:G:A	rs7759021	G	A	g	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	106637800	106637801	chr6:106637801:A:C	rs60992370	A	C	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	106917885	106917886	chr6:106917886:T:C	rs36165927	T	C	C	Hoxa9_MA0594.1	4	1	+	9.165841187632518	2.2570864083172966	GTCATAAATCC
chr6	107132858	107132859	chr6:107132859:G:A	rs34084328	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	107607176	107607177	chr6:107607177:G:A	rs9398136	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	107607181	107607182	chr6:107607182:G:A	rs2818256	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	107675001	107675002	chr6:107675002:C:T	rs1237365022	C	T	C	Hoxa9_MA0594.1	0	1	-	9.461778229732111	8.59659271700956	GGCATAAATCA
chr6	108584476	108584477	chr6:108584477:G:A	rs2802290	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	108771559	108771560	chr6:108771560:A:G	rs59631236	A	G	a	Hoxa9_MA0594.1	3	1	+	9.342415950129519	6.360619522720662	GCCATCAATTA
chr6	108794143	108794144	chr6:108794144:A:C	rs472656	A	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	109203878	109203879	chr6:109203879:T:C	rs371960	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	109432967	109432968	chr6:109432968:G:A	rs9480958	G	A	A	Hoxa9_MA0594.1	0	1	+	10.60021510825185	9.7350295955293	GCTATAAATCA
chr6	109458970	109458971	chr6:109458971:T:C	rs9487113	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	109459015	109459016	chr6:109459016:C:T	rs9480962	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	109817062	109817063	chr6:109817063:T:C	rs72944996	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	109897572	109897573	chr6:109897573:A:G	rs9386858	A	G	A	Hoxa9_MA0594.1	1	1	-	8.614832151347091	9.506381912457487	CTAATAAATCT
chr6	109927236	109927237	chr6:109927237:G:A	rs140821575	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	110296505	110296506	chr6:110296506:G:A	rs2334324	G	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	110377518	110377519	chr6:110377519:A:G	rs9384739	A	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	110415911	110415912	chr6:110415912:G:A	rs4945862	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	110511030	110511031	chr6:110511031:A:C	rs75138427	A	C	c	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	110562590	110562591	chr6:110562591:C:T	rs2691165	C	T	C	Hoxa9_MA0594.1	0	1	-	7.801541603022757	6.936356090300206	GACATGAATCA
chr6	110568128	110568129	chr6:110568129:T:A	rs12665517	T	A	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	110816363	110816364	chr6:110816364:A:T	rs147718018	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	110816373	110816374	chr6:110816374:G:A	rs1378421617	G	A	G	Hoxa9_MA0594.1	5	1	-	8.642730421240351	6.222591413910663	GAAATCAATCA
chr6	110816384	110816385	chr6:110816385:G:T	rs706933	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	110864646	110864647	chr6:110864647:G:A	rs1150107	G	A	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	110981428	110981429	chr6:110981429:C:T	rs34994540	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	111228553	111228554	chr6:111228554:A:G	rs6902442	A	G	A	Hoxa9_MA0594.1	8	1	-	8.391575681703616	1.518287631603727	GTCATACATCA
chr6	111872094	111872095	chr6:111872095:G:C	rs9387048	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	111872111	111872112	chr6:111872112:G:T	rs72944245	G	T	G	Hoxa9_MA0594.1	0	1	-	10.97597179968702	10.53382270774282	CCAATAAATCA
chr6	112204708	112204709	chr6:112204709:G:A	rs3777927	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	112506604	112506605	chr6:112506605:G:A	rs76320943	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	112558051	112558052	chr6:112558052:A:C	rs79311907	A	C	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr6	112620740	112620741	chr6:112620741:T:C	rs9372333	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	113060809	113060810	chr6:113060810:C:T	rs9387116	C	T	T	Hoxa9_MA0594.1	1	1	+	8.01767889594621	7.126129134835814	ACAATGAATCA
chr6	113192371	113192372	chr6:113192372:C:T	rs9488099	C	T	C	Hoxa9_MA0594.1	1	1	+	10.185770791426988	9.294221030316594	ACCATAAATCT
chr6	113293289	113293290	chr6:113293290:G:A	rs62421482	G	A	G	Hoxa9_MA0594.1	8	1	+	7.1426138406622535	8.62774971750127	CCCATAAAGCA
chr6	113461638	113461639	chr6:113461639:A:G	rs9481369	A	G	G	Hoxa9_MA0594.1	5	1	+	9.7350295955293	7.21888578373269	ACTATAAATCA
chr6	113623429	113623430	chr6:113623430:G:A	rs9398357	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	113632315	113632316	chr6:113632316:C:T	chr6:113632316:C:T	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	114013344	114013345	chr6:114013345:T:C	rs7767184	T	C	t	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	114277149	114277150	chr6:114277150:G:C	rs796768	G	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	114513017	114513018	chr6:114513018:A:T	rs10456893	A	T	A	Hoxa9_MA0594.1	0	1	+	9.7350295955293	7.632213342265231	ACTATAAATCA
chr6	114874345	114874346	chr6:114874346:T:C	rs7757220	T	C	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	115241093	115241094	chr6:115241094:C:G	rs2818184	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	115959192	115959193	chr6:115959193:C:T	rs12203739	C	T	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	115999519	115999520	chr6:115999520:C:T	rs3798229	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	116254472	116254473	chr6:116254473:G:A	rs2232465	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	118554521	118554522	chr6:118554522:T:C	rs12153955	T	C	T	Hoxa9_MA0594.1	3	1	-	8.431006454478752	5.449210027069893	TCAATAAATCA
chr6	118589618	118589619	chr6:118589619:C:G	rs12191529	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	118744784	118744785	chr6:118744785:A:G	rs62424007	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	118821902	118821903	chr6:118821903:G:A	rs112167811	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	119040887	119040888	chr6:119040888:G:A	rs115067554	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	119129191	119129192	chr6:119129192:C:T	rs706980	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	119170975	119170976	chr6:119170976:G:A	rs78004543	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	119196817	119196818	chr6:119196818:G:A	rs4590306	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	119196842	119196843	chr6:119196843:T:C	rs17442147	T	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	119308458	119308459	chr6:119308459:C:G	rs195093	C	G	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	119314934	119314935	chr6:119314935:G:A	rs11153811	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	119314943	119314944	chr6:119314944:T:A	rs186435923	T	A	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	119546683	119546684	chr6:119546684:T:C	rs8180610	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	119669235	119669236	chr6:119669236:C:T	rs9401162	C	T	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	119806765	119806766	chr6:119806766:T:C	rs17240135	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	120556211	120556212	chr6:120556212:C:G	rs9398581	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	121414056	121414057	chr6:121414057:G:C	rs17083560	G	C	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	121516564	121516565	chr6:121516565:C:A	rs112131952	C	A	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	121755627	121755628	chr6:121755628:A:G	rs79053966	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	121822752	121822753	chr6:121822753:C:A	rs7762960	C	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	121835757	121835758	chr6:121835758:T:C	rs2269580	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	122049248	122049249	chr6:122049249:C:A	rs11154065	C	A	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	122200388	122200389	chr6:122200389:G:T	rs1379091	G	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	122642072	122642073	chr6:122642073:C:A	rs9385263	C	A	c	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	122710138	122710139	chr6:122710139:T:G	rs1049172484	T	G	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	122827450	122827451	chr6:122827451:A:G	rs12210012	A	G	A	Hoxa9_MA0594.1	7	1	+	8.510815797847973	1.6078821241450525	ACAATCAATCT
chr6	122887587	122887588	chr6:122887588:T:C	rs7774131	T	C	T	Hoxa9_MA0594.1	7	1	-	9.126027407570612	2.223093733867693	GCCATCTATCA
chr6	123177002	123177003	chr6:123177003:T:A	rs13203531	T	A	T	Hoxa9_MA0594.1	0	1	-	9.452499902096816	7.349683648832748	AACATAAATCA
chr6	123177005	123177006	chr6:123177006:G:A	rs13218088	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	123571191	123571192	chr6:123571192:G:A	rs2295732	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	123643812	123643813	chr6:123643813:T:C	rs7453704	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	123886949	123886950	chr6:123886950:T:C	rs1352679	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	123917054	123917055	chr6:123917055:C:T	rs584050	C	T	c	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	124371820	124371821	chr6:124371821:C:T	rs11751246	C	T	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	124558226	124558227	chr6:124558227:A:G	rs530822	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	124753302	124753303	chr6:124753303:A:C	rs12661994	A	C	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	124868686	124868687	chr6:124868687:T:C	rs60980833	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	124933862	124933863	chr6:124933863:A:G	rs2875743	A	G	A	Hoxa9_MA0594.1	0	1	+	8.59659271700956	9.461778229732111	AGCATAAATCA
chr6	125571608	125571609	chr6:125571609:G:A	rs377623495	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	125985866	125985867	chr6:125985867:G:A	rs2326215	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	126575021	126575022	chr6:126575022:G:C	rs4621656	G	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	127303105	127303106	chr6:127303106:T:C	rs184427755	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	127428510	127428511	chr6:127428511:C:G	rs7771391	C	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	128001985	128001986	chr6:128001986:T:C	rs118191185	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	129073861	129073862	chr6:129073862:C:A	rs74810388	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	129184686	129184687	chr6:129184687:T:C	rs9492262	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr6	129235534	129235535	chr6:129235535:T:C	rs77870407	T	C	T	Hoxa9_MA0594.1	7	1	-	9.623761664808185	2.7208279911052657	CCTATCAATCA
chr6	129499234	129499235	chr6:129499235:A:G	rs577945290	A	G	A	Hoxa9_MA0594.1	10	1	-	9.182953099595478	8.189387744188851	CTCATCAATCT
chr6	130239128	130239129	chr6:130239129:T:G	rs6930501	T	G	G	Hoxa9_MA0594.1	1	1	+	7.605819354503911	5.438601153967346	GTCATCAAACA
chr6	130377209	130377210	chr6:130377210:C:T	rs62432230	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	130558213	130558214	chr6:130558214:G:A	rs1933759	G	A	G	Hoxa9_MA0594.1	9	1	-	9.064232820513286	6.439519601929048	ACAATAAATCT
chr6	130601039	130601040	chr6:130601040:C:G	rs2225945	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	130629480	130629481	chr6:130629481:T:C	rs73622718	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	130838136	130838137	chr6:130838137:C:G	rs75739442	C	G	C	Hoxa9_MA0594.1	1	1	+	7.632183602891756	4.573415641244794	ACCATCAAACA
chr6	131172268	131172269	chr6:131172269:C:T	rs10499182	C	T	c	Hoxa9_MA0594.1	9	1	+	8.34024025881841	5.7155270402341705	GGAATAAATCA
chr6	131251879	131251880	chr6:131251880:A:G	rs920548890	A	G	A	Hoxa9_MA0594.1	4	1	-	8.773111023127315	1.8643562438120942	CAAATAAATCA
chr6	131398275	131398276	chr6:131398276:C:T	rs17060229	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	131547731	131547732	chr6:131547732:G:A	rs2781647	G	A	G	Hoxa9_MA0594.1	0	1	+	9.112852618472068	8.247667105749517	GTCATGAATCA
chr6	131552194	131552195	chr6:131552195:A:T	rs2608919	A	T	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	131761634	131761635	chr6:131761635:T:C	rs557602813	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	131816233	131816234	chr6:131816234:C:G	rs73780760	C	G	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr6	131937504	131937505	chr6:131937505:G:A	rs146183387	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	132524837	132524838	chr6:132524838:T:C	rs1001860	T	C	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr6	132539120	132539121	chr6:132539121:G:A	rs9389004	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	132815534	132815535	chr6:132815535:A:G	rs534413117	A	G	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	133158225	133158226	chr6:133158226:T:C	rs77562673	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	133160051	133160052	chr6:133160052:G:A	rs531156	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	133343298	133343299	chr6:133343299:T:A	rs2765783	T	A	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	133407619	133407620	chr6:133407620:G:A	rs211621	G	A	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	133568963	133568964	chr6:133568964:A:T	rs78311371	A	T	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	133568988	133568989	chr6:133568989:T:C	rs80286568	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr6	134138850	134138851	chr6:134138851:G:A	rs6911836	G	A	G	Hoxa9_MA0594.1	2	1	-	8.53481249235293	6.614481409225707	GCCATGAATCT
chr6	134189736	134189737	chr6:134189737:G:A	rs1763504	G	A	A	Hoxa9_MA0594.1	0	1	+	7.854530172183207	6.989344659460656	GACATAAATCC
chr6	134453082	134453083	chr6:134453083:C:T	rs4266506	C	T	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	134453084	134453085	chr6:134453085:G:T	rs4467792	G	T	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	134453125	134453126	chr6:134453126:A:G	rs1281494063	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	134633232	134633233	chr6:134633233:G:A	rs112309419	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	134649385	134649386	chr6:134649386:G:C	rs72986408	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	134735910	134735911	chr6:134735911:C:A	rs6569969	C	A	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	134823068	134823069	chr6:134823069:G:A	rs79128687	G	A	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	134823078	134823079	chr6:134823079:G:A	rs1435819160	G	A	g	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	134823095	134823096	chr6:134823096:C:T	rs563590799	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	135113470	135113471	chr6:135113471:C:A	rs9483787	C	A	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	135539164	135539165	chr6:135539165:A:G	rs77545322	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	135663749	135663750	chr6:135663750:A:G	rs79144397	A	G	C	Hoxa9_MA0594.1	7	1	+	10.084422038576625	3.1814883648737045	CTAATAAATCA
chr6	136103345	136103346	chr6:136103346:A:T	rs118108700	A	T	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	136155547	136155548	chr6:136155548:G:A	rs115050139	G	A	G	Hoxa9_MA0594.1	1	1	-	8.01767889594621	7.126129134835814	ACAATGAATCA
chr6	136180826	136180827	chr6:136180827:G:A	rs74449314	G	A	A	Hoxa9_MA0594.1	0	1	-	8.86008902203566	6.315123676827392	CCCATACATCA
chr6	136351964	136351965	chr6:136351965:G:A	rs9376182	G	A	G	Hoxa9_MA0594.1	2	1	-	7.6696269796303795	5.749295896503156	ACCATGAATCT
chr6	136615200	136615201	chr6:136615201:T:C	rs77415843	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	136696382	136696383	chr6:136696383:G:A	rs757153765	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	136728694	136728695	chr6:136728695:A:T	rs9376226	A	T	T	Hoxa9_MA0594.1	5	1	+	9.452499902096816	6.478943872101814	AACATAAATCA
chr6	136760348	136760349	chr6:136760349:T:G	rs368342687	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	137005497	137005498	chr6:137005498:G:A	rs1744065	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	137088106	137088107	chr6:137088107:T:C	rs112431630	T	C	T	Hoxa9_MA0594.1	4	1	+	8.417211793056513	1.508457013741292	GCAGTAAATCA
chr6	137099602	137099603	chr6:137099603:A:G	rs1322553	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	137180776	137180777	chr6:137180777:G:T	rs6570138	G	T	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	137390462	137390463	chr6:137390463:C:T	rs62420992	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	137409457	137409458	chr6:137409458:T:C	rs74541524	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	137415948	137415949	chr6:137415949:G:A	rs145257936	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	137631109	137631110	chr6:137631110:A:T	rs368175844	A	T	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	137982678	137982679	chr6:137982679:T:C	rs141498954	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	138293598	138293599	chr6:138293599:A:C	rs79163120	A	C	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	138307811	138307812	chr6:138307812:G:A	rs34178134	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	138509428	138509429	chr6:138509429:T:C	rs6922771	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	138592928	138592929	chr6:138592929:C:T	rs76982498	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	138594567	138594568	chr6:138594568:T:C	rs6908050	T	C	T	Hoxa9_MA0594.1	7	1	-	7.390499134806127	0.48756546110320714	CCCATACATCT
chr6	138782386	138782387	chr6:138782387:A:G	rs72985053	A	G	A	Hoxa9_MA0594.1	7	1	+	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr6	138797006	138797007	chr6:138797007:G:A	rs6570283	G	A	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	138843396	138843397	chr6:138843397:T:G	rs868825909	T	G	T	Hoxa9_MA0594.1	7	1	-	8.027829768240773	3.0432882146992744	CTCATCAATTA
chr6	139080536	139080537	chr6:139080537:C:T	rs73774959	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	139240466	139240467	chr6:139240467:G:C	rs57130404	G	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	139508422	139508423	chr6:139508423:A:G	rs651837	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr6	139884480	139884481	chr6:139884481:A:G	rs9376479	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	139974523	139974524	chr6:139974524:A:G	rs17811661	A	G	A	Hoxa9_MA0594.1	3	1	+	8.107577641616745	5.125781214207885	TTCATCAATCA
chr6	140053224	140053225	chr6:140053225:A:G	rs9403139	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	140286601	140286602	chr6:140286602:T:A	rs675432	T	A	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	140633073	140633074	chr6:140633074:A:T	rs4301319	A	T	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	140830026	140830027	chr6:140830027:A:G	rs669528	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	140830034	140830035	chr6:140830035:A:C	rs668256	A	C	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	141647745	141647746	chr6:141647746:T:A	rs4628118	T	A	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	141653577	141653578	chr6:141653578:T:A	rs9376641	T	A	T	Hoxa9_MA0594.1	3	1	-	8.077400274154538	1.2346636315468487	GCCATTAATCT
chr6	142112602	142112603	chr6:142112603:G:A	rs754942611	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	142265440	142265441	chr6:142265441:G:A	rs1931989	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr6	142384925	142384926	chr6:142384926:C:T	rs12197866	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	142684060	142684061	chr6:142684061:A:T	rs58294323	A	T	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	142686027	142686028	chr6:142686028:T:G	rs11155262	T	G	T	Hoxa9_MA0594.1	3	1	-	7.0122332387752895	3.0840188142960496	GCCATCAAGCA
chr6	142694405	142694406	chr6:142694406:A:G	rs3900869	A	G	G	Hoxa9_MA0594.1	6	1	+	7.8716420841461705	1.0540412983905123	CACATCAATCT
chr6	142735418	142735419	chr6:142735419:T:C	rs9390022	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	142798694	142798695	chr6:142798695:A:G	rs12211360	A	G	A	Hoxa9_MA0594.1	0	1	-	8.107577641616745	10.652542986825011	TTCATCAATCA
chr6	142867464	142867465	chr6:142867465:C:T	rs561519912	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	142867495	142867496	chr6:142867496:T:C	rs150728058	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	142871518	142871519	chr6:142871519:T:C	rs62432360	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	142907025	142907026	chr6:142907026:G:A	rs6570533	G	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	143325645	143325646	chr6:143325646:C:T	rs9373388	C	T	C	Hoxa9_MA0594.1	5	1	+	9.53100501591131	7.110866008581622	CTAATCAATCA
chr6	143334844	143334845	chr6:143334845:G:C	rs77919378	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	143405935	143405936	chr6:143405936:C:T	rs143156478	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	143441608	143441609	chr6:143441609:C:T	rs72988635	C	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	143477010	143477011	chr6:143477011:A:G	rs4895615	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	144034536	144034537	chr6:144034537:C:T	rs6930429	C	T	T	Hoxa9_MA0594.1	9	1	+	8.431006454478752	5.806293235894513	TCAATAAATCA
chr6	144123376	144123377	chr6:144123377:A:G	rs6570606	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	144377442	144377443	chr6:144377443:T:A	rs74613567	T	A	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	144435019	144435020	chr6:144435020:G:A	rs12202807	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	144823601	144823602	chr6:144823602:G:A	rs9399506	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	144878540	144878541	chr6:144878541:G:A	rs6570656	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	144892463	144892464	chr6:144892464:T:C	rs9322001	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	144944239	144944240	chr6:144944240:A:T	rs9390263	A	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	145271250	145271251	chr6:145271251:G:A	rs505814	G	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr6	145347486	145347487	chr6:145347487:G:A	rs1974276	G	A	G	Hoxa9_MA0594.1	9	1	-	9.341231971375704	6.7165187527914645	CACATCAATCA
chr6	145497236	145497237	chr6:145497237:G:A	rs12663204	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr6	145553506	145553507	chr6:145553507:T:C	rs408443	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	145755970	145755971	chr6:145755971:A:G	rs1415746	A	G	a	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	146200503	146200504	chr6:146200504:C:T	rs184477022	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	146338921	146338922	chr6:146338922:A:G	rs362831	A	G	a	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	146866100	146866101	chr6:146866101:T:C	rs6937015	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	147141921	147141922	chr6:147141922:T:A	rs188691141	T	A	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	147283655	147283656	chr6:147283656:C:T	rs9485158	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	147283818	147283819	chr6:147283819:C:T	chr6:147283819:C:T	C	T	C	Hoxa9_MA0594.1	1	1	+	9.538749763970214	8.647200002859819	GCCGTAAATCA
chr6	147283842	147283843	chr6:147283843:T:A	rs182950886	T	A	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	147390798	147390799	chr6:147390799:T:C	rs187014410	T	C	T	Hoxa9_MA0594.1	10	1	-	8.88286440866876	2.246091422915992	GCAATGAATCA
chr6	147436421	147436422	chr6:147436422:G:T	rs566729	G	T	T	Hoxa9_MA0594.1	1	1	-	9.064232820513286	6.861372043953581	ACAATAAATCT
chr6	147547697	147547698	chr6:147547698:C:A	rs75339732	C	A	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	147566432	147566433	chr6:147566433:C:T	rs702347	C	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	147665579	147665580	chr6:147665580:T:C	rs9386189	T	C	T	Hoxa9_MA0594.1	5	1	-	7.992188342502578	5.476044530705968	GGCATAAATCT
chr6	147677085	147677086	chr6:147677086:C:T	rs11757812	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	147884283	147884284	chr6:147884284:T:C	rs508902	T	C	T	Hoxa9_MA0594.1	7	1	-	9.182953099595478	2.2800194258925583	CTCATCAATCT
chr6	147910001	147910002	chr6:147910002:T:C	rs9497891	T	C	T	Hoxa9_MA0594.1	3	1	-	8.41793993009146	5.436143502682602	ACCATACATCA
chr6	147983950	147983951	chr6:147983951:A:G	rs34972738	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	148037973	148037974	chr6:148037974:G:A	rs2876677	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	148044222	148044223	chr6:148044223:C:T	rs7772940	C	T	C	Hoxa9_MA0594.1	1	1	+	7.2334010995627285	6.341851338452333	CCCATCTATCT
chr6	148128210	148128211	chr6:148128211:C:G	rs182477264	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	148249898	148249899	chr6:148249899:T:C	rs17078227	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	148305057	148305058	chr6:148305058:A:G	rs530812735	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr6	148323594	148323595	chr6:148323595:T:A	rs6940190	T	A	A	Hoxa9_MA0594.1	8	1	+	8.425452190470368	4.955692137370916	GCAATTAATCA
chr6	148324510	148324511	chr6:148324511:C:T	rs72563836	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr6	148793889	148793890	chr6:148793890:A:G	rs11155594	A	G	A	Hoxa9_MA0594.1	4	1	-	8.99912740272714	2.090372623411919	TCCATCAATCA
chr6	148868715	148868716	chr6:148868716:C:G	rs151011529	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	148869898	148869899	chr6:148869899:C:G	chr6:148869899:C:G	C	G	C	Hoxa9_MA0594.1	5	1	+	8.074332694835956	6.111605905704661	CCCATCAAACA
chr6	148959849	148959850	chr6:148959850:A:G	rs7746457	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	149008352	149008353	chr6:149008353:C:A	rs2500536	C	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	149050475	149050476	chr6:149050476:A:T	rs4332004	A	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	149076220	149076221	chr6:149076221:A:G	rs147943299	A	G	A	Hoxa9_MA0594.1	7	1	+	10.046798085586536	3.143864411883616	GCTATCAATCA
chr6	149161271	149161272	chr6:149161272:T:C	rs56222993	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr6	149161273	149161274	chr6:149161274:G:A	rs12212622	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	149161305	149161306	chr6:149161306:A:G	rs9498236	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	149458959	149458960	chr6:149458960:T:A	rs382084	T	A	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr6	149475830	149475831	chr6:149475831:C:T	rs448874	C	T	T	Hoxa9_MA0594.1	0	1	-	9.126027407570612	8.260841894848062	GCCATCTATCA
chr6	149475838	149475839	chr6:149475839:T:G	rs394526	T	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	149565788	149565789	chr6:149565789:G:A	rs73781231	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	149705059	149705060	chr6:149705060:T:C	rs6913486	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	149740654	149740655	chr6:149740655:T:C	rs9688517	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr6	149913909	149913910	chr6:149913910:A:G	rs1457784138	A	G	-	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr6	149920888	149920889	chr6:149920889:T:G	rs6915465	T	G	t	Hoxa9_MA0594.1	3	1	-	7.838158659038301	3.9099442345590605	GTCATCCATCA
chr6	149990357	149990358	chr6:149990358:A:G	rs9479341	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	150016712	150016713	chr6:150016713:C:A	rs9479404	C	A	C	Hoxa9_MA0594.1	9	1	+	7.0122332387752895	3.944403405879198	GCCATCAAGCA
chr6	150038743	150038744	chr6:150038744:C:G	rs9371657	C	G	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	150041835	150041836	chr6:150041836:A:C	rs115430073	A	C	A	Hoxa9_MA0594.1	10	1	+	8.093782980194504	5.630627737558344	GTCGTCAATCA
chr6	150153399	150153400	chr6:150153400:T:C	rs73782218	T	C	T	Hoxa9_MA0594.1	3	1	-	7.390499134806127	4.408702707397269	CCCATACATCT
chr6	150196185	150196186	chr6:150196186:G:T	rs146585515	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr6	150285204	150285205	chr6:150285205:A:G	rs6928831	A	G	A	Hoxa9_MA0594.1	4	1	-	8.843479834418904	1.934725055103683	ATTATAAATCA
chr6	150373687	150373688	chr6:150373688:C:G	rs116711825	C	G	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	150417871	150417872	chr6:150417872:T:C	rs58352826	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	150453248	150453249	chr6:150453249:A:G	rs1033446	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	150515466	150515467	chr6:150515467:T:C	rs10499263	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	150576095	150576096	chr6:150576096:T:C	rs9322267	T	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	150582334	150582335	chr6:150582335:G:A	rs143728340	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	150654724	150654725	chr6:150654725:C:G	rs75569882	C	G	g	Hoxa9_MA0594.1	30	0	-	0	0	.
chr6	150654765	150654766	chr6:150654766:A:T	rs118128099	A	T	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	150806936	150806937	chr6:150806937:T:C	rs76521446	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	150806968	150806969	chr6:150806969:C:G	rs6924094	C	G	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	150857919	150857920	chr6:150857920:G:A	rs377441820	G	A	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	150902767	150902768	chr6:150902768:G:A	rs175869	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	150941068	150941069	chr6:150941069:C:A	rs74579419	C	A	C	Hoxa9_MA0594.1	9	1	+	9.642272946632424	6.574443113736333	ATAATAAATCA
chr6	150969320	150969321	chr6:150969321:T:G	rs803513	T	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	150978392	150978393	chr6:150978393:G:T	rs6912960	G	T	G	Hoxa9_MA0594.1	5	1	-	8.220877979215818	8.774295001881132	GCAATCAATTA
chr6	151001898	151001899	chr6:151001899:A:G	rs117790084	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	151020217	151020218	chr6:151020218:G:A	rs56082939	G	A	G	Hoxa9_MA0594.1	3	1	-	7.727146254177281	4.812624036048834	ACCCTAAATCA
chr6	151045218	151045219	chr6:151045219:G:A	rs74752198	G	A	G	Hoxa9_MA0594.1	1	1	-	8.069159876740681	7.177610115630285	GCCGTAAATCT
chr6	151122282	151122283	chr6:151122283:T:A	rs56094157	T	A	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	151140829	151140830	chr6:151140830:C:T	rs12660147	C	T	C	Hoxa9_MA0594.1	0	1	-	8.34024025881841	7.475054746095858	GGAATAAATCA
chr6	151166633	151166634	chr6:151166634:T:G	rs143918934	T	G	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	151413427	151413428	chr6:151413428:T:C	rs6937971	T	C	C	Hoxa9_MA0594.1	3	1	-	9.472796552016483	6.491000124607625	CCCATAAATTA
chr6	151706819	151706820	chr6:151706820:T:C	rs851980	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	152063664	152063665	chr6:152063665:T:C	rs3798571	T	C	C	Hoxa9_MA0594.1	10	1	-	10.004402379582464	3.367629393829695	GCCATGAATCA
chr6	152189821	152189822	chr6:152189822:A:G	rs2813524	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	152205043	152205044	chr6:152205044:C:T	rs2763025	C	T	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr6	152245552	152245553	chr6:152245553:T:C	rs17082383	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	152663225	152663226	chr6:152663226:G:C	rs1322510	G	C	G	Hoxa9_MA0594.1	9	1	-	8.577208198357003	1.7788772366561554	GCTATCAATCT
chr6	152701538	152701539	chr6:152701539:T:C	rs2038616	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	152949768	152949769	chr6:152949769:G:A	rs12212131	G	A	G	Hoxa9_MA0594.1	2	1	-	9.472796552016483	7.552465468889261	CCCATAAATTA
chr6	153534029	153534030	chr6:153534030:T:G	rs9371705	T	G	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	153791127	153791128	chr6:153791128:T:G	rs1892356	T	G	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	153948266	153948267	chr6:153948267:T:C	rs654359	T	C	T	Hoxa9_MA0594.1	3	1	-	7.738551051121958	4.7567546237131	CCAATACATCA
chr6	153980439	153980440	chr6:153980440:A:G	rs12207125	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	154156777	154156778	chr6:154156778:T:C	rs17277929	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	154285882	154285883	chr6:154285883:A:G	rs11966566	A	G	A	Hoxa9_MA0594.1	1	1	+	9.452499902096816	8.59659271700956	AACATAAATCA
chr6	154450314	154450315	chr6:154450315:T:C	rs4870285	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	154480018	154480019	chr6:154480019:T:C	rs530729004	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	154493807	154493808	chr6:154493808:C:T	rs2351131	C	T	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	154493808	154493809	chr6:154493809:T:G	rs2351132	T	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	154930346	154930347	chr6:154930347:C:T	rs7752042	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr6	155259133	155259134	chr6:155259134:T:C	rs6929157	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	155273502	155273503	chr6:155273503:C:T	rs9397797	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	155292771	155292772	chr6:155292772:A:G	rs4869851	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	155327360	155327361	chr6:155327361:G:A	rs9478638	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	155694228	155694229	chr6:155694229:G:A	rs9397835	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	155694639	155694640	chr6:155694640:A:G	rs920928311	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	155850713	155850714	chr6:155850714:T:G	rs11759141	T	G	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr6	155993989	155993990	chr6:155993990:T:C	rs76339933	T	C	T	Hoxa9_MA0594.1	4	1	+	9.708665347141455	2.7999105678262337	GTTATAAATCA
chr6	156004995	156004996	chr6:156004996:A:G	rs6931064	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	156016381	156016382	chr6:156016382:C:G	rs6925014	C	G	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr6	156065845	156065846	chr6:156065846:G:T	rs6557469	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	156279181	156279182	chr6:156279182:G:C	rs6937546	G	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr6	156379681	156379682	chr6:156379682:G:A	rs2819083	G	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr6	156425156	156425157	chr6:156425157:T:A	rs114764146	T	A	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr6	156774220	156774221	chr6:156774221:G:T	chr6:156774221:G:T	G	T	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	156880437	156880438	chr6:156880438:A:T	rs10457936	A	T	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	157424785	157424786	chr6:157424786:C:T	rs149087749	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	157491425	157491426	chr6:157491426:G:T	rs139768627	G	T	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	157637512	157637513	chr6:157637513:C:T	rs618823	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	157688239	157688240	chr6:157688240:A:G	rs662095	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr6	157707006	157707007	chr6:157707007:A:G	rs658195	A	G	a	Hoxa9_MA0594.1	26	0	+	0	0	.
chr6	157707007	157707008	chr6:157707008:A:T	rs658196	A	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	157881261	157881262	chr6:157881262:A:G	rs6455869	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr6	157940862	157940863	chr6:157940863:T:C	rs145641917	T	C	T	Hoxa9_MA0594.1	3	1	-	8.899082879431504	5.917286452022643	AACATCAATCA
chr6	157940866	157940867	chr6:157940867:C:T	rs912879	C	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	158009342	158009343	chr6:158009343:A:C	chr6:158009343:A:C	A	C	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	158289990	158289991	chr6:158289991:A:G	rs827864	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr6	158300749	158300750	chr6:158300750:A:G	rs112566257	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	158300780	158300781	chr6:158300781:G:A	rs1832872	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr6	158474973	158474974	chr6:158474974:C:G	rs627967	C	G	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	158506618	158506619	chr6:158506619:A:G	rs3828712	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	158752589	158752590	chr6:158752590:G:A	rs117007920	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr6	159040304	159040305	chr6:159040305:G:A	rs2235819	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr6	159106925	159106926	chr6:159106926:G:T	rs9457550	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr6	159726408	159726409	chr6:159726409:A:G	rs1853259	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr6	159726411	159726412	chr6:159726412:T:C	rs150082296	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	159726435	159726436	chr6:159726436:C:T	chr6:159726436:C:T	C	T	C	Hoxa9_MA0594.1	9	1	+	10.084422038576625	7.459708819992386	CTAATAAATCA
chr6	159828484	159828485	chr6:159828485:T:G	rs56331712	T	G	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	159852888	159852889	chr6:159852889:G:A	rs73586404	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	159904565	159904566	chr6:159904566:T:C	rs12333081	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	159969885	159969886	chr6:159969886:G:C	rs76232680	G	C	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr6	159969897	159969898	chr6:159969898:G:T	rs1169244331	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	159969898	159969899	chr6:159969899:C:A	rs116227660	C	A	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	160248707	160248708	chr6:160248708:C:T	rs762102569	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr6	160254871	160254872	chr6:160254872:T:G	rs946704956	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	160385102	160385103	chr6:160385103:T:C	rs4235926	T	C	T	Hoxa9_MA0594.1	7	1	-	8.425452190470368	1.5225185167674486	GCAATTAATCA
chr6	160883209	160883210	chr6:160883210:A:T	rs62435349	A	T	a	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	161002197	161002198	chr6:161002198:T:G	rs79191531	T	G	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	161106955	161106956	chr6:161106956:C:G	rs1543261	C	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr6	161150527	161150528	chr6:161150528:T:C	rs9458141	T	C	t	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	161251410	161251411	chr6:161251411:T:G	rs1884480	T	G	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	161326077	161326078	chr6:161326078:C:T	rs187437341	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr6	161478158	161478159	chr6:161478159:T:A	rs6922432	T	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr6	161562043	161562044	chr6:161562044:G:A	rs538976560	G	A	g	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	161882500	161882501	chr6:161882501:C:G	rs62438265	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr6	161945221	161945222	chr6:161945222:A:G	rs1790021	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr6	162243117	162243118	chr6:162243118:T:C	rs752012047	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	162291154	162291155	chr6:162291155:G:C	rs115783267	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	162435377	162435378	chr6:162435378:T:C	rs9365433	T	C	C	Hoxa9_MA0594.1	6	1	-	8.899299335817666	2.0816985500620104	GCCATCAATAA
chr6	162854653	162854654	chr6:162854654:A:G	rs117786524	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	163297611	163297612	chr6:163297612:A:G	rs6901924	A	G	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	163428271	163428272	chr6:163428272:T:G	rs186698846	T	G	T	Hoxa9_MA0594.1	7	1	-	9.376001310570523	4.391459757029024	GCAATCAATCT
chr6	163747526	163747527	chr6:163747527:T:C	rs7750152	T	C	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr6	163807045	163807046	chr6:163807046:C:T	rs74944213	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	163811239	163811240	chr6:163811240:C:T	rs34811073	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr6	163816946	163816947	chr6:163816947:A:T	rs13194833	A	T	A	Hoxa9_MA0594.1	8	1	-	10.1771786874735	6.707418634374048	CCTATAAATCA
chr6	163860669	163860670	chr6:163860670:C:T	rs16895433	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	163860670	163860671	chr6:163860671:G:A	rs56936161	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr6	164109151	164109152	chr6:164109152:G:A	rs767939053	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr6	164209108	164209109	chr6:164209109:C:T	rs1548307	C	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr6	164897625	164897626	chr6:164897626:T:C	rs9457017	T	C	C	Hoxa9_MA0594.1	8	1	+	8.814258917513376	1.9409708674134873	ACCATATATCA
chr6	165516363	165516364	chr6:165516364:C:T	rs62443788	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr6	165617752	165617753	chr6:165617753:G:A	rs147888164	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr6	165626891	165626892	chr6:165626892:A:G	rs9348023	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr6	165717129	165717130	chr6:165717130:A:G	rs150379906	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr6	165775552	165775553	chr6:165775553:T:C	rs12200184	T	C	T	Hoxa9_MA0594.1	4	1	+	8.306671999370346	1.3979172200551262	CCCATCCATCA
chr6	165856009	165856010	chr6:165856010:A:T	rs79027708	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr6	165878030	165878031	chr6:165878031:T:C	rs34092665	T	C	T	Hoxa9_MA0594.1	7	1	-	8.74080400765128	1.837870333948359	ATCATCAATCT
chr6	165890414	165890415	chr6:165890415:T:C	rs9457117	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	166404284	166404285	chr6:166404285:A:G	rs9355577	A	G	G	Hoxa9_MA0594.1	3	1	+	9.139216866859913	6.157420439451053	ACCATGAATCA
chr6	166682362	166682363	chr6:166682363:T:C	rs2281143	T	C	.	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr6	166734171	166734172	chr6:166734172:G:C	rs9459731	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	166958475	166958476	chr6:166958476:G:T	rs201391082	G	T	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	166968960	166968961	chr6:166968961:T:C	rs434093	T	C	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr6	167100992	167100993	chr6:167100993:T:C	rs204293	T	C	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr6	167114329	167114330	chr6:167114330:C:A	rs6456157	C	A	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	167217363	167217364	chr6:167217364:C:T	rs6931054	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr6	167521354	167521355	chr6:167521355:T:C	rs6605486	T	C	C	Hoxa9_MA0594.1	7	1	-	7.700782005789437	0.7978483320865171	GTCCTAAATCA
chr6	167748973	167748974	chr6:167748974:A:G	rs541991	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	167765498	167765499	chr6:167765499:T:C	rs9364307	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr6	167776533	167776534	chr6:167776534:C:G	rs489901	C	G	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr6	167998370	167998371	chr6:167998371:C:T	rs114924023	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	168098666	168098667	chr6:168098667:G:A	rs73032045	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr6	168133330	168133331	chr6:168133331:T:C	rs374621280	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr6	168133363	168133364	chr6:168133364:G:T	rs2046848	G	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr6	168152486	168152487	chr6:168152487:T:C	rs12199340	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr6	168152513	168152514	chr6:168152514:A:C	rs12197691	A	C	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	168172176	168172177	chr6:168172177:G:A	rs192555432	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr6	168197671	168197672	chr6:168197672:G:A	rs77237508	G	A	g	Hoxa9_MA0594.1	14	0	-	0	0	.
chr6	168304149	168304150	chr6:168304150:C:T	rs576146044	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr6	168304177	168304178	chr6:168304178:A:G	rs7762976	A	G	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr6	168304184	168304185	chr6:168304185:G:A	rs7740368	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr6	168305141	168305142	chr6:168305142:G:A	rs9346686	G	A	N	Hoxa9_MA0594.1	21	0	-	0	0	.
chr6	168342413	168342414	chr6:168342414:T:C	rs7744524	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	168708783	168708784	chr6:168708784:T:C	rs686357	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr6	168927636	168927637	chr6:168927637:A:G	rs9355110	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr6	168950545	168950546	chr6:168950546:C:T	rs111458924	C	T	T	Hoxa9_MA0594.1	5	1	-	8.53481249235293	11.050956304149539	GCCATGAATCT
chr6	168950563	168950564	chr6:168950564:G:A	rs9455507	G	A	A	Hoxa9_MA0594.1	9	1	-	8.294678504924521	5.669965286340282	GACATCAATCT
chr6	168992653	168992654	chr6:168992654:A:G	rs148087013	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr6	168992666	168992667	chr6:168992667:G:A	rs1757973	G	A	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr6	168996731	168996732	chr6:168996732:A:C	rs10945353	A	C	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr6	169024096	169024097	chr6:169024097:A:G	rs11967180	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr6	169092668	169092669	chr6:169092669:T:C	rs17788870	T	C	T	Hoxa9_MA0594.1	7	1	-	8.642730421240351	1.7397967475374307	GAAATCAATCA
chr6	169174472	169174473	chr6:169174473:T:C	rs1888835	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr6	169200987	169200988	chr6:169200988:G:A	rs7759987	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr6	169245032	169245033	chr6:169245033:T:C	rs73046005	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr6	169581323	169581324	chr6:169581324:A:G	rs7764627	A	G	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	169590023	169590024	chr6:169590024:A:G	rs77432181	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr6	169810942	169810943	chr6:169810943:C:T	chr6:169810943:C:T	C	T	C	Hoxa9_MA0594.1	9	1	+	9.15524832447614	6.530535105891902	GTTATCAATCA
chr6	169866208	169866209	chr6:169866209:G:T	rs567780125	G	T	g	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr6	169868436	169868437	chr6:169868437:T:C	rs4716349	T	C	t	Hoxa9_MA0594.1	13	0	+	0	0	.
chr6	170023928	170023929	chr6:170023929:G:C	rs78092595	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr6	170159405	170159406	chr6:170159406:T:C	rs62422654	T	C	T	Hoxa9_MA0594.1	0	1	-	9.08885592396711	9.95404143668966	ATAATCAATCA
chr6	170212062	170212063	chr6:170212063:T:C	rs73790402	T	C	t	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr6	170262619	170262620	chr6:170262620:A:G	rs563648790	A	G	A	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	93723	93724	chr7:93724:G:C	rs55980615	G	C	g	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	113145	113146	chr7:113146:G:A	rs12718097	G	A	g	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr7	439572	439573	chr7:439573:C:T	rs149190344	C	T	c	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	482916	482917	chr7:482917:G:A	rs116846920	G	A	g	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	658363	658364	chr7:658364:G:A	rs79478853	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	658365	658366	chr7:658366:T:G	rs75398562	T	G	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	669229	669230	chr7:669230:G:C	rs71536300	G	C	G	Hoxa9_MA0594.1	0	1	+	8.787894669125532	8.364858248347181	GTCATATATCA
chr7	742677	742678	chr7:742678:A:G	rs183423096	A	G	-	Hoxa9_MA0594.1	7	1	+	8.219694000462	1.3167603267590802	CAAATCAATCA
chr7	842905	842906	chr7:842906:G:A	rs76550570	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	1096038	1096039	chr7:1096039:C:G	rs6978413	C	G	c	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	1217912	1217913	chr7:1217913:A:G	rs13226483	A	G	G	Hoxa9_MA0594.1	4	1	-	7.656437520341079	0.7476827410258584	GCCATCTATCT
chr7	1225040	1225041	chr7:1225041:A:G	rs186343276	A	G	-	Hoxa9_MA0594.1	3	1	+	9.02967993770463	6.047883510295772	CCCATAAATAA
chr7	1232186	1232187	chr7:1232187:C:A	rs554229908	C	A	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	1292259	1292260	chr7:1292260:T:C	rs73264499	T	C	T	Hoxa9_MA0594.1	10	1	-	9.53100501591131	2.894232030158541	CTAATCAATCA
chr7	1292283	1292284	chr7:1292284:C:A	rs10240008	C	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr7	1587198	1587199	chr7:1587199:G:A	rs73289427	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr7	1768970	1768971	chr7:1768971:C:T	rs5008569	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	1768991	1768992	chr7:1768992:C:G	rs10248201	C	G	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	1801094	1801095	chr7:1801095:C:T	rs540633239	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	1819088	1819089	chr7:1819089:G:A	rs6963853	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	1843277	1843278	chr7:1843278:G:T	rs11767177	G	T	G	Hoxa9_MA0594.1	0	1	+	8.417211793056513	5.449210027069893	GCAGTAAATCA
chr7	1845507	1845508	chr7:1845508:T:G	rs13226911	T	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	1902862	1902863	chr7:1902863:C:A	rs10950429	C	A	c	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	1903229	1903230	chr7:1903230:T:C	rs12699439	T	C	-	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	2104809	2104810	chr7:2104810:C:G	rs75415668	C	G	C	Hoxa9_MA0594.1	9	1	+	9.894648994041017	3.09631803234017	CACATAAATCA
chr7	2104816	2104817	chr7:2104817:G:C	rs143872879	G	C	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	2104824	2104825	chr7:2104825:G:A	rs535419974	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	2296240	2296241	chr7:2296241:A:G	rs138472728	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	2359372	2359373	chr7:2359373:G:T	rs13236428	G	T	g	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	2373693	2373694	chr7:2373694:G:T	rs3807432	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	2681095	2681096	chr7:2681096:C:T	rs114671760	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	2717578	2717579	chr7:2717579:C:T	rs950299413	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	2735144	2735145	chr7:2735145:C:T	rs141582036	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	2972382	2972383	chr7:2972383:G:C	rs748078499	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	3697774	3697775	chr7:3697775:C:T	rs73302247	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	3805130	3805131	chr7:3805131:C:T	rs12113979	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr7	3851656	3851657	chr7:3851657:G:T	rs12532912	G	T	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr7	3971698	3971699	chr7:3971699:C:T	rs6965800	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	4093766	4093767	chr7:4093767:C:T	rs12701401	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	4230107	4230108	chr7:4230108:G:A	rs80203773	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	4330838	4330839	chr7:4330839:C:T	rs2342822	C	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	4401616	4401617	chr7:4401617:T:G	rs10155898	T	G	G	Hoxa9_MA0594.1	4	1	+	8.18560062555707	1.2768458462418502	ACCATAAAACA
chr7	4760062	4760063	chr7:4760063:T:C	rs6463034	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	4806069	4806070	chr7:4806070:A:G	rs6963791	A	G	G	Hoxa9_MA0594.1	3	1	+	8.642730421240351	5.660933993831492	GAAATCAATCA
chr7	5045373	5045374	chr7:5045374:T:C	rs13239077	T	C	c	Hoxa9_MA0594.1	3	1	-	7.7140234448373395	4.732227017428481	CCTATAAATCC
chr7	5166406	5166407	chr7:5166407:T:G	rs4263660	T	G	G	Hoxa9_MA0594.1	3	1	-	7.390499134806127	3.462284710326886	CCCATACATCT
chr7	5191628	5191629	chr7:5191629:T:C	rs73046135	T	C	T	Hoxa9_MA0594.1	3	1	-	7.1129682170592226	4.131171789650365	CCCATAACTCA
chr7	5426345	5426346	chr7:5426346:T:G	rs1042137221	T	G	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	5428226	5428227	chr7:5428227:A:G	rs73333875	A	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	5471184	5471185	chr7:5471185:G:A	rs4724695	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	5636930	5636931	chr7:5636931:G:A	rs141557075	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	6049271	6049272	chr7:6049272:C:T	rs147948265	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	6081067	6081068	chr7:6081068:C:G	rs2527401	C	G	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	6175987	6175988	chr7:6175988:G:A	chr7:6175988:G:A	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	6302734	6302735	chr7:6302735:G:A	rs117126293	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	6370186	6370187	chr7:6370187:A:G	rs10261256	A	G	g	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	6676303	6676304	chr7:6676304:C:T	rs12702533	C	T	C	Hoxa9_MA0594.1	9	1	+	10.652542986825011	8.027829768240773	CTCATCAATCA
chr7	6827383	6827384	chr7:6827384:A:C	chr7:6827384:A:C	A	C	a	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	6827386	6827387	chr7:6827387:C:T	rs71524083	C	T	c	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	6917391	6917392	chr7:6917392:G:T	rs72585263	G	T	.	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	6917432	6917433	chr7:6917433:C:A	rs150270556	C	A	.	Hoxa9_MA0594.1	23	0	+	0	0	.
chr7	7136704	7136705	chr7:7136705:C:T	rs575253260	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	7183414	7183415	chr7:7183415:A:C	rs547569532	A	C	A	Hoxa9_MA0594.1	4	1	-	9.196147443905666	2.2873926645904445	GAAATAAATCA
chr7	7183427	7183428	chr7:7183428:T:C	chr7:7183428:T:C	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	7222114	7222115	chr7:7222115:C:G	rs1005750302	C	G	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	7222119	7222120	chr7:7222120:A:G	rs2024122	A	G	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	7495347	7495348	chr7:7495348:G:A	rs13312659	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	7564967	7564968	chr7:7564968:C:T	rs10486183	C	T	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	7648194	7648195	chr7:7648195:T:G	rs1859604	T	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	7738307	7738308	chr7:7738308:T:G	rs7796096	T	G	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	7739612	7739613	chr7:7739613:G:A	rs12702640	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	7762052	7762053	chr7:7762053:C:T	rs17137415	C	T	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	7772517	7772518	chr7:7772518:T:G	rs773094625	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	7919163	7919164	chr7:7919164:A:C	rs79275687	A	C	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	7963191	7963192	chr7:7963192:C:T	rs7807433	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	8477944	8477945	chr7:8477945:T:C	rs1157604	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	8710573	8710574	chr7:8710574:T:C	rs10280299	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	9024053	9024054	chr7:9024054:C:G	rs10234620	C	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	9029832	9029833	chr7:9029833:A:G	rs887939	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	9232929	9232930	chr7:9232930:G:T	rs77312552	G	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	9391489	9391490	chr7:9391490:A:G	rs79929498	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	9628312	9628313	chr7:9628313:C:G	chr7:9628313:C:G	C	G	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr7	9776805	9776806	chr7:9776806:G:A	rs28577952	G	A	G	Hoxa9_MA0594.1	0	1	-	6.837082112140813	4.292116766932545	CCCATCCATCT
chr7	9886400	9886401	chr7:9886401:T:C	rs2915131	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	10121990	10121991	chr7:10121991:A:T	rs17162655	A	T	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	10643233	10643234	chr7:10643234:A:G	rs3950561	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	10787758	10787759	chr7:10787759:A:G	rs10233178	A	G	A	Hoxa9_MA0594.1	3	1	+	8.59659271700956	5.614796289600702	AGCATAAATCA
chr7	10967465	10967466	chr7:10967466:C:G	rs112261492	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	11127846	11127847	chr7:11127847:A:G	rs7792131	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	11430374	11430375	chr7:11430375:C:T	rs34105511	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	11871442	11871443	chr7:11871443:G:A	rs77885387	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	11912269	11912270	chr7:11912270:C:A	rs17165372	C	A	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	12062300	12062301	chr7:12062301:A:G	rs79604863	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	12091285	12091286	chr7:12091286:T:C	rs2192743	T	C	T	Hoxa9_MA0594.1	3	1	-	8.034113823095115	5.0523173956862575	ACCATCAATAA
chr7	12091285	12091286	chr7:12091286:T:G	chr7:12091286:T:G	T	G	T	Hoxa9_MA0594.1	3	1	-	8.034113823095115	4.105899398615875	ACCATCAATAA
chr7	12162639	12162640	chr7:12162640:T:C	rs12699312	T	C	C	Hoxa9_MA0594.1	10	1	-	8.08407129645524	1.4472983107024717	GCTATGAATCA
chr7	12212456	12212457	chr7:12212457:A:G	rs145074253	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	12288155	12288156	chr7:12288156:C:T	rs57681723	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	12404863	12404864	chr7:12404864:C:T	rs7778670	C	T	C	Hoxa9_MA0594.1	5	1	+	8.306671999370346	5.886532992040658	CCCATCCATCA
chr7	12497220	12497221	chr7:12497221:G:A	rs531800043	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	12630453	12630454	chr7:12630454:A:G	rs11980671	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	12694948	12694949	chr7:12694949:C:T	rs12533880	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	12694989	12694990	chr7:12694990:C:A	rs55909982	C	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	12710451	12710452	chr7:12710452:G:C	rs116049943	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	12737682	12737683	chr7:12737683:A:G	rs1524937	A	G	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	12749018	12749019	chr7:12749019:C:T	rs849732	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	12785591	12785592	chr7:12785592:T:A	rs2108472	T	A	A	Hoxa9_MA0594.1	7	1	-	9.452499902096816	2.5495662283938967	AACATAAATCA
chr7	12958588	12958589	chr7:12958589:C:G	rs10253223	C	G	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	13153554	13153555	chr7:13153555:G:T	rs57092450	G	T	G	Hoxa9_MA0594.1	0	1	+	7.536004637837573	4.568002871850955	GCCATAACTCA
chr7	13171869	13171870	chr7:13171870:C:T	rs2191038	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	13370014	13370015	chr7:13370015:A:G	rs1432498	A	G	a	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	13779439	13779440	chr7:13779440:T:C	rs11766318	T	C	T	Hoxa9_MA0594.1	0	1	-	9.642272946632424	10.507458459354975	ATAATAAATCA
chr7	14495897	14495898	chr7:14495898:C:G	rs2116314	C	G	C	Hoxa9_MA0594.1	0	1	-	8.425452190470368	8.002415769692018	GCAATTAATCA
chr7	14639807	14639808	chr7:14639808:A:G	rs10256605	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	14762899	14762900	chr7:14762900:T:G	rs561156645	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	15137076	15137077	chr7:15137077:G:A	rs10950553	G	A	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	15229205	15229206	chr7:15229206:A:T	rs10253882	A	T	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	15243969	15243970	chr7:15243970:G:A	rs28477564	G	A	A	Hoxa9_MA0594.1	0	1	+	11.628996430268678	10.763810917546127	GTCATAAATCA
chr7	15489527	15489528	chr7:15489528:A:C	rs564181067	A	C	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	15571527	15571528	chr7:15571528:C:G	rs6970169	C	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	15620718	15620719	chr7:15620719:A:G	rs17334667	A	G	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	15625460	15625461	chr7:15625461:C:G	rs2282932	C	G	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	15629111	15629112	chr7:15629112:C:T	rs17168927	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	15721051	15721052	chr7:15721052:C:T	rs531653	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	15721063	15721064	chr7:15721064:T:A	rs78002148	T	A	T	Hoxa9_MA0594.1	8	1	+	8.01767889594621	4.547918842846758	ACAATGAATCA
chr7	15746574	15746575	chr7:15746575:G:A	rs37418	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	15973251	15973252	chr7:15973252:C:T	rs73305950	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	16045862	16045863	chr7:16045863:G:A	rs13235193	G	A	A	Hoxa9_MA0594.1	9	1	-	7.438771319837264	4.814058101253026	GGCATCAATCT
chr7	16269040	16269041	chr7:16269041:T:C	rs932878411	T	C	T	Hoxa9_MA0594.1	7	1	-	8.729708420148697	1.826774746445777	GCCATCCATCA
chr7	16371083	16371084	chr7:16371084:T:C	rs117041036	T	C	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	16460867	16460868	chr7:16460868:T:C	rs9791820	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	16647718	16647719	chr7:16647719:A:T	rs190590945	A	T	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	16663241	16663242	chr7:16663242:C:T	rs17625938	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	16728723	16728724	chr7:16728724:G:A	rs10260978	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	16728729	16728730	chr7:16728730:C:T	rs71540766	C	T	C	Hoxa9_MA0594.1	0	1	+	10.1771786874735	7.632213342265231	CCTATAAATCA
chr7	16811897	16811898	chr7:16811898:A:G	rs117803377	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	16846469	16846470	chr7:16846470:G:A	rs17136741	G	A	G	Hoxa9_MA0594.1	5	1	-	8.899082879431504	6.478943872101814	AACATCAATCA
chr7	16880681	16880682	chr7:16880682:A:C	rs117351380	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	17143198	17143199	chr7:17143199:G:A	rs7809312	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	17406997	17406998	chr7:17406998:A:G	chr7:17406998:A:G	A	G	A	Hoxa9_MA0594.1	3	1	+	8.614832151347091	5.633035723938232	CTAATAAATCT
chr7	17523657	17523658	chr7:17523658:A:G	rs11772776	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	17677018	17677019	chr7:17677019:G:C	rs7803752	G	C	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	17774380	17774381	chr7:17774381:C:G	rs2723519	C	G	G	Hoxa9_MA0594.1	5	1	+	8.107577641616745	6.144850852485448	TTCATCAATCA
chr7	17774404	17774405	chr7:17774405:C:T	rs1404419	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr7	17855951	17855952	chr7:17855952:G:C	rs2140710	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	18716022	18716023	chr7:18716023:T:C	rs4721722	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	18768467	18768468	chr7:18768468:C:T	rs114407570	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	18977309	18977310	chr7:18977310:G:C	rs12533489	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	18978597	18978598	chr7:18978598:C:T	rs2240278	C	T	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	19030666	19030667	chr7:19030667:G:A	rs115076323	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr7	19269473	19269474	chr7:19269474:T:C	rs76070784	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	19327457	19327458	chr7:19327458:C:T	rs77842085	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	19377915	19377916	chr7:19377916:G:A	rs79396488	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	19470246	19470247	chr7:19470247:T:C	rs2110470	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	19526896	19526897	chr7:19526897:A:G	rs116326545	A	G	A	Hoxa9_MA0594.1	3	1	+	10.60021510825185	7.618418680842992	GCTATAAATCA
chr7	19665409	19665410	chr7:19665410:G:T	rs60221291	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	19665412	19665413	chr7:19665413:C:T	rs75412405	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	19665413	19665414	chr7:19665414:A:G	rs57589602	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	19665452	19665453	chr7:19665453:T:G	rs111863518	T	G	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	19728844	19728845	chr7:19728845:T:C	rs10262988	T	C	C	Hoxa9_MA0594.1	4	1	+	8.18560062555707	1.2768458462418502	ACCATAAAACA
chr7	19777367	19777368	chr7:19777368:G:A	rs764674270	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	19900188	19900189	chr7:19900189:G:C	rs10249779	G	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	20491346	20491347	chr7:20491347:C:T	rs75308186	C	T	-	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	20514602	20514603	chr7:20514603:C:G	rs1054265857	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	20575259	20575260	chr7:20575260:T:C	rs12700220	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	20696261	20696262	chr7:20696262:G:A	rs2158856	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	20862668	20862669	chr7:20862669:C:T	rs204585	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	21172769	21172770	chr7:21172770:T:G	rs10224542	T	G	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	21318317	21318318	chr7:21318318:G:C	rs2700294	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	21328152	21328153	chr7:21328153:C:T	rs2700296	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	21486699	21486700	chr7:21486700:T:C	rs74794293	T	C	t	Hoxa9_MA0594.1	5	1	-	7.738551051121958	5.2224072393253484	CCAATACATCA
chr7	21542693	21542694	chr7:21542694:C:G	rs11773317	C	G	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	21898876	21898877	chr7:21898877:C:T	rs75439933	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	21898915	21898916	chr7:21898916:G:A	rs73683008	G	A	g	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	21984207	21984208	chr7:21984208:A:G	rs74298655	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	22194055	22194056	chr7:22194056:T:C	rs6965394	T	C	T	Hoxa9_MA0594.1	7	1	-	7.415122238259951	0.512188564557031	CTCATCCATCA
chr7	22325879	22325880	chr7:22325880:T:C	rs33951611	T	C	C	Hoxa9_MA0594.1	7	1	-	11.205960009490326	4.303026335787407	CTCATAAATCA
chr7	22482240	22482241	chr7:22482241:G:A	rs28469242	G	A	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	22993085	22993086	chr7:22993086:T:A	rs1583512	T	A	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	23098727	23098728	chr7:23098728:C:A	chr7:23098728:C:A	C	A	C	Hoxa9_MA0594.1	5	1	-	7.801541603022757	7.344129384824365	GACATGAATCA
chr7	23117962	23117963	chr7:23117963:A:G	rs17147682	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	23213827	23213828	chr7:23213828:A:T	rs534474886	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	23654081	23654082	chr7:23654082:G:C	chr7:23654082:G:C	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	23654092	23654093	chr7:23654093:G:C	chr7:23654093:G:C	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	23710065	23710066	chr7:23710066:G:A	rs113393234	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr7	23915374	23915375	chr7:23915375:T:C	rs142334739	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	23915380	23915381	chr7:23915381:G:A	rs6959471	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	23915412	23915413	chr7:23915413:T:C	rs2059446	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	24039461	24039462	chr7:24039462:T:C	rs80067671	T	C	T	Hoxa9_MA0594.1	8	1	-	8.18560062555707	6.700464748718053	ACCATAAAACA
chr7	24135697	24135698	chr7:24135698:G:A	rs12536274	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	24246997	24246998	chr7:24246998:T:C	rs16191	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	24318580	24318581	chr7:24318581:G:A	rs6461791	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	24407289	24407290	chr7:24407290:T:C	rs13221610	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	24609353	24609354	chr7:24609354:T:C	rs7805228	T	C	T	Hoxa9_MA0594.1	3	1	-	8.707588800243967	5.725792372835108	CCTATAAATCT
chr7	24719198	24719199	chr7:24719199:G:T	rs754554	G	T	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	24719232	24719233	chr7:24719233:C:T	rs754553	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	24883215	24883216	chr7:24883216:A:T	rs10255575	A	T	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	24891695	24891696	chr7:24891696:T:G	rs17150460	T	G	T	Hoxa9_MA0594.1	2	1	-	8.614832151347091	9.736370122260793	CTAATAAATCT
chr7	24923131	24923132	chr7:24923132:C:T	rs10486440	C	T	C	Hoxa9_MA0594.1	5	1	+	8.99912740272714	6.5789883953974515	TCCATCAATCA
chr7	25566991	25566992	chr7:25566992:T:A	rs17727166	T	A	T	Hoxa9_MA0594.1	4	1	+	8.952964889792172	2.044210110476952	CCAATCAATCT
chr7	25670414	25670415	chr7:25670415:G:A	rs117990749	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	25670441	25670442	chr7:25670442:T:G	rs916720467	T	G	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr7	25778081	25778082	chr7:25778082:C:T	rs75792884	C	T	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr7	25852508	25852509	chr7:25852509:A:C	chr7:25852509:A:C	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr7	25852656	25852657	chr7:25852657:C:T	rs77601902	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	25892922	25892923	chr7:25892923:A:G	rs4722539	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	25922537	25922538	chr7:25922538:C:G	rs77484044	C	G	A	Hoxa9_MA0594.1	1	1	+	8.45982798789041	5.4010600262434485	CCAATGAATCA
chr7	26008524	26008525	chr7:26008525:G:C	rs1295218333	G	C	G	Hoxa9_MA0594.1	2	1	-	7.173729231511967	0.6498292437636279	ACCCTCAATCA
chr7	26091466	26091467	chr7:26091467:A:G	rs7793753	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	26198460	26198461	chr7:26198461:T:C	rs76814747	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	26198479	26198480	chr7:26198480:G:A	rs6968551	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	26316376	26316377	chr7:26316377:A:G	rs79293489	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	26519340	26519341	chr7:26519341:T:G	rs11766718	T	G	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr7	26525873	26525874	chr7:26525874:A:G	rs6979763	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	27091848	27091849	chr7:27091849:G:C	rs750302213	G	C	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	27101868	27101869	chr7:27101869:G:C	rs77382168	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	27111895	27111896	chr7:27111896:G:A	rs17471751	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	27115277	27115278	chr7:27115278:C:G	rs921211977	C	G	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	27118136	27118137	chr7:27118137:G:A	rs4722657	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	27147987	27147988	chr7:27147988:C:T	rs181098649	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	27193739	27193740	chr7:27193740:C:T	rs17437551	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	27202739	27202740	chr7:27202740:A:C	rs1859168	A	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	27413595	27413596	chr7:27413596:G:A	rs79773221	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr7	27874484	27874485	chr7:27874485:G:A	rs17155971	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	27910323	27910324	chr7:27910324:C:G	rs7804617	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	27910335	27910336	chr7:27910336:A:C	rs7804500	A	C	A	Hoxa9_MA0594.1	10	1	-	8.00320666478695	2.836023566263714	CCCATAAATTT
chr7	27965774	27965775	chr7:27965775:C:T	rs73089168	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	28042961	28042962	chr7:28042962:A:G	rs117536071	A	G	G	Hoxa9_MA0594.1	6	1	-	8.787894669125532	8.391575681703616	GTCATATATCA
chr7	28113216	28113217	chr7:28113217:G:A	rs4722755	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	28113220	28113221	chr7:28113221:G:A	rs17156404	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	28152344	28152345	chr7:28152345:A:C	rs75466631	A	C	A	Hoxa9_MA0594.1	5	1	+	8.34024025881841	7.7868232361530945	GGAATAAATCA
chr7	28173204	28173205	chr7:28173205:T:C	rs508347	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	28266554	28266555	chr7:28266555:C:T	rs494458	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	28316476	28316477	chr7:28316477:T:A	rs73082440	T	A	T	Hoxa9_MA0594.1	4	1	+	8.219694000462	1.3109392211467799	CAAATCAATCA
chr7	28445336	28445337	chr7:28445337:A:G	rs17156694	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	28450192	28450193	chr7:28450193:T:C	rs6970730	T	C	T	Hoxa9_MA0594.1	3	1	-	8.107577641616745	5.125781214207885	TTCATCAATCA
chr7	28466532	28466533	chr7:28466533:G:A	rs2391666	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	28531495	28531496	chr7:28531496:G:A	rs114145953	G	A	G	Hoxa9_MA0594.1	9	1	-	7.58145301587856	4.956739797294321	CCAATCTATCA
chr7	28551563	28551564	chr7:28551564:G:A	chr7:28551564:G:A	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	28596209	28596210	chr7:28596210:C:T	rs6979922	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	28647105	28647106	chr7:28647106:A:G	rs41322	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	28785373	28785374	chr7:28785374:C:T	rs73079958	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	28785374	28785375	chr7:28785375:A:G	rs73079960	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	28831123	28831124	chr7:28831124:C:T	rs6462107	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	28940025	28940026	chr7:28940026:T:A	rs221138	T	A	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	28989085	28989086	chr7:28989086:G:A	rs114985804	G	A	g	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	29190229	29190230	chr7:29190230:G:T	rs4722891	G	T	G	Hoxa9_MA0594.1	5	1	-	7.8728260628999855	8.4262430855653	GCCATCAATTT
chr7	29196670	29196671	chr7:29196671:T:C	rs7784530	T	C	T	Hoxa9_MA0594.1	2	1	-	7.994175372278161	2.5918133554435236	CCAGTAAATCA
chr7	29202603	29202604	chr7:29202604:A:G	rs3812391	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	29255702	29255703	chr7:29255703:A:G	rs12113986	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	29255719	29255720	chr7:29255720:C:T	rs7796223	C	T	C	Hoxa9_MA0594.1	0	1	-	9.764268392154055	8.899082879431504	GACATCAATCA
chr7	29332114	29332115	chr7:29332115:C:T	rs39130	C	T	c	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	29458013	29458014	chr7:29458014:A:C	rs3909209	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr7	29552593	29552594	chr7:29552594:G:T	rs2391763	G	T	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	29572996	29572997	chr7:29572997:T:C	rs1344479	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	29589062	29589063	chr7:29589063:T:A	rs10807849	T	A	T	Hoxa9_MA0594.1	4	1	+	11.544092747935409	4.635337968620187	CCCATCAATCA
chr7	29611326	29611327	chr7:29611327:T:C	rs76173442	T	C	T	Hoxa9_MA0594.1	7	1	-	7.983126471253447	1.0801927975505277	GCCATAAATAT
chr7	29794061	29794062	chr7:29794062:A:C	rs10238381	A	C	C	Hoxa9_MA0594.1	6	1	+	8.18560062555707	4.9481798769920085	ACCATAAAACA
chr7	29940407	29940408	chr7:29940408:C:T	rs2107898	C	T	t	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	30242644	30242645	chr7:30242645:A:T	rs118106975	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	30505070	30505071	chr7:30505071:C:T	chr7:30505071:C:T	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	30505071	30505072	chr7:30505072:A:T	rs61161650	A	T	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr7	30725924	30725925	chr7:30725925:G:A	rs187258406	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	30725925	30725926	chr7:30725926:G:A	rs117256225	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	30795652	30795653	chr7:30795653:G:A	rs765508	G	A	G	Hoxa9_MA0594.1	9	1	-	9.632353768761673	7.007640550177435	ACCATCAATCT
chr7	30828875	30828876	chr7:30828876:T:C	rs7808904	T	C	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	31043668	31043669	chr7:31043669:G:A	rs75871930	G	A	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	31072009	31072010	chr7:31072010:C:T	rs144275262	C	T	-	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	31121638	31121639	chr7:31121639:A:G	rs7808175	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	31517093	31517094	chr7:31517094:C:A	rs10239614	C	A	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	31812073	31812074	chr7:31812074:C:T	rs75179349	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	32227556	32227557	chr7:32227557:A:G	rs34579111	A	G	A	Hoxa9_MA0594.1	7	1	+	8.58753084576043	1.6845971720575106	ACCATAAATAA
chr7	32513878	32513879	chr7:32513879:G:T	chr7:32513879:G:T	G	T	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	32611037	32611038	chr7:32611038:G:A	rs55953527	G	A	g	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	33061692	33061693	chr7:33061693:A:G	rs187539762	A	G	A	Hoxa9_MA0594.1	0	1	+	10.763810917546127	11.628996430268678	ATCATAAATCA
chr7	33130163	33130164	chr7:33130164:A:T	rs187411516	A	T	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	33286686	33286687	chr7:33286687:T:G	rs72496118	T	G	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	33433022	33433023	chr7:33433023:A:C	chr7:33433023:A:C	A	C	A	Hoxa9_MA0594.1	10	1	+	8.99912740272714	6.53597216009098	TCCATCAATCA
chr7	33500734	33500735	chr7:33500735:T:C	rs140607905	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	33550715	33550716	chr7:33550716:A:C	rs75608008	A	C	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	33550733	33550734	chr7:33550734:A:G	rs73109629	A	G	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	33601943	33601944	chr7:33601944:A:G	rs1451022	A	G	G	Hoxa9_MA0594.1	4	1	-	7.260118532919163	0.35136375360394306	GCCATCCATCT
chr7	33698732	33698733	chr7:33698733:A:G	rs921413	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	33903361	33903362	chr7:33903362:T:C	rs775896084	T	C	T	Hoxa9_MA0594.1	7	1	-	8.4262430855653	1.5233094118623804	GCCATAAATTT
chr7	34123370	34123371	chr7:34123371:T:C	rs1362462	T	C	C	Hoxa9_MA0594.1	8	1	+	8.247667105749517	1.3743790556496278	ATCATGAATCA
chr7	34530511	34530512	chr7:34530512:T:C	rs188782593	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr7	34676899	34676900	chr7:34676900:T:A	rs56043957	T	A	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	34723992	34723993	chr7:34723993:C:T	rs11773493	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	35047961	35047962	chr7:35047962:G:T	rs35206184	G	T	.	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	35355437	35355438	chr7:35355438:C:T	rs12701423	C	T	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	35389854	35389855	chr7:35389855:G:T	rs11766731	G	T	G	Hoxa9_MA0594.1	1	1	-	7.727146254177281	5.524285477617576	ACCCTAAATCA
chr7	35522154	35522155	chr7:35522155:G:A	rs73334204	G	A	G	Hoxa9_MA0594.1	0	1	+	7.581196251050087	6.716010738327537	GCCATAAAACT
chr7	35567863	35567864	chr7:35567864:C:T	rs6973837	C	T	C	Hoxa9_MA0594.1	1	1	+	9.506381912457487	8.614832151347091	CCAATAAATCT
chr7	35617645	35617646	chr7:35617646:G:A	rs1408519942	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	35730519	35730520	chr7:35730520:T:C	rs187855237	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	35749511	35749512	chr7:35749512:T:C	rs62452776	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	35799753	35799754	chr7:35799754:G:A	rs150168614	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	36095235	36095236	chr7:36095236:C:T	rs113756893	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	36277306	36277307	chr7:36277307:C:T	rs72622379	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	36487808	36487809	chr7:36487809:C:A	rs12673399	C	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	36488013	36488014	chr7:36488014:T:C	rs541812025	T	C	T	Hoxa9_MA0594.1	6	1	-	8.484451549460127	1.6668507637044698	GTAATCAATCT
chr7	36669061	36669062	chr7:36669062:G:A	rs3857746	G	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	36712247	36712248	chr7:36712248:T:C	rs4723560	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr7	36723954	36723955	chr7:36723955:C:T	rs6462703	C	T	T	Hoxa9_MA0594.1	0	1	-	10.507458459354975	9.642272946632424	GTAATAAATCA
chr7	36790099	36790100	chr7:36790100:A:G	rs10259514	A	G	A	Hoxa9_MA0594.1	5	1	+	8.814258917513376	6.298115105716766	ACCATATATCA
chr7	36861437	36861438	chr7:36861438:C:T	rs117950694	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	36987410	36987411	chr7:36987411:A:T	rs576489930	A	T	A	Hoxa9_MA0594.1	8	1	-	7.529537515497607	4.059777462398155	TCCATCAATCT
chr7	37009978	37009979	chr7:37009979:A:G	rs17170830	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	37329799	37329800	chr7:37329800:A:T	rs10269144	A	T	A	Hoxa9_MA0594.1	10	1	+	9.08885592396711	7.619266036737576	ATAATCAATCA
chr7	37330558	37330559	chr7:37330559:A:G	rs2717943	A	G	A	Hoxa9_MA0594.1	3	1	+	11.967129168713758	8.985332741304902	GCCATCAATCA
chr7	37353572	37353573	chr7:37353573:G:T	rs12532822	G	T	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	37421526	37421527	chr7:37421527:T:G	rs12533811	T	G	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	37421541	37421542	chr7:37421542:G:A	rs75129780	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	37427547	37427548	chr7:37427548:T:A	rs117533343	T	A	T	Hoxa9_MA0594.1	1	1	+	8.561166597372587	7.249855581923276	GTCATAAATAA
chr7	37434603	37434604	chr7:37434604:T:A	rs1647789	T	A	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	37549749	37549750	chr7:37549750:G:A	rs149952142	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	37550230	37550231	chr7:37550231:A:C	rs2033044	A	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	37974133	37974134	chr7:37974134:C:A	rs118034834	C	A	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	38020387	38020388	chr7:38020388:G:T	chr7:38020388:G:T	G	T	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	38179006	38179007	chr7:38179007:T:C	rs34928238	T	C	t	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	38291400	38291401	chr7:38291401:G:C	rs1860519	G	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	38907816	38907817	chr7:38907817:T:C	rs9638944	T	C	T	Hoxa9_MA0594.1	4	1	+	8.18560062555707	1.2768458462418502	ACCATAAAACA
chr7	39034151	39034152	chr7:39034152:G:A	rs12532009	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	39324541	39324542	chr7:39324542:G:C	rs12701733	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	39553551	39553552	chr7:39553552:C:T	rs2329452	C	T	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	39617085	39617086	chr7:39617086:T:A	rs11771326	T	A	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	39617086	39617087	chr7:39617087:C:A	rs11767632	C	A	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	39754997	39754998	chr7:39754998:C:T	rs113116271	C	T	.	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	40306802	40306803	chr7:40306803:T:A	chr7:40306803:T:A	T	A	T	Hoxa9_MA0594.1	10	1	-	7.440758349612847	5.9711684623833134	CCAGTCAATCA
chr7	40439854	40439855	chr7:40439855:A:G	rs1445091359	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	40642004	40642005	chr7:40642005:A:C	chr7:40642005:A:C	A	C	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	40716378	40716379	chr7:40716379:C:G	rs1203730	C	G	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr7	40840600	40840601	chr7:40840601:G:A	rs7777500	G	A	-	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	41144043	41144044	chr7:41144044:C:T	rs117796908	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	41478446	41478447	chr7:41478447:T:C	rs273158	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	41508088	41508089	chr7:41508089:T:C	rs17171891	T	C	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr7	41559603	41559604	chr7:41559604:G:A	rs140511064	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr7	41884725	41884726	chr7:41884726:A:T	rs2330263	A	T	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	41997011	41997012	chr7:41997012:T:C	rs182994866	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	42076288	42076289	chr7:42076289:C:T	rs10951666	C	T	C	Hoxa9_MA0594.1	2	1	+	11.544092747935409	9.623761664808185	CCCATCAATCA
chr7	42407872	42407873	chr7:42407873:A:G	rs1560618	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	42552556	42552557	chr7:42552557:T:C	rs13223827	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	42674759	42674760	chr7:42674760:C:T	rs76904215	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	43254118	43254119	chr7:43254119:G:A	rs17723390	G	A	G	Hoxa9_MA0594.1	9	1	-	7.440758349612847	4.816045131028608	CCAGTCAATCA
chr7	43363714	43363715	chr7:43363715:G:A	rs36014678	G	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	43363737	43363738	chr7:43363738:G:A	rs34140960	G	A	A	Hoxa9_MA0594.1	2	1	-	8.497369115614307	6.577038032487084	GCCATCAAACA
chr7	43435479	43435480	chr7:43435480:G:A	rs17207421	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr7	43461487	43461488	chr7:43461488:G:A	rs3919666	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr7	43694190	43694191	chr7:43694191:A:T	rs369035505	A	T	A	Hoxa9_MA0594.1	7	1	+	8.689816197693718	1.7868825239907973	CTCATGAATCA
chr7	43762383	43762384	chr7:43762384:A:G	rs10486752	A	G	A	Hoxa9_MA0594.1	8	1	-	8.774295001881132	1.901006951781243	GCAATAAATTA
chr7	44163406	44163407	chr7:44163407:C:T	rs758989	C	T	T	Hoxa9_MA0594.1	3	1	-	9.538749763970214	12.520546191379072	GCCGTAAATCA
chr7	44163424	44163425	chr7:44163425:A:G	rs931046349	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	44449087	44449088	chr7:44449088:C:T	rs17711652	C	T	C	Hoxa9_MA0594.1	0	1	-	7.813535555584478	6.948350042861927	GCCATACATCT
chr7	44606834	44606835	chr7:44606835:C:G	rs1014839205	C	G	c	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	44630554	44630555	chr7:44630555:T:C	rs886651	T	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	44735591	44735592	chr7:44735592:C:A	rs530754916	C	A	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	44735592	44735593	chr7:44735593:G:A	rs183020961	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	44883137	44883138	chr7:44883138:T:C	rs56066170	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	45028983	45028984	chr7:45028984:C:G	rs11763408	C	G	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	45185555	45185556	chr7:45185556:T:G	rs13235986	T	G	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	45185581	45185582	chr7:45185582:T:A	rs11974651	T	A	A	Hoxa9_MA0594.1	8	1	+	8.038914744234518	4.569154691135066	GCCCTCAATCA
chr7	45202546	45202547	chr7:45202547:A:G	rs34328967	A	G	A	Hoxa9_MA0594.1	10	1	+	9.256408009457576	2.6196350237048076	CCCATATATCA
chr7	45204955	45204956	chr7:45204956:A:G	rs1294886	A	G	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	45270719	45270720	chr7:45270720:G:C	rs1527970	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	45548943	45548944	chr7:45548944:A:G	rs112630305	A	G	A	Hoxa9_MA0594.1	7	1	+	9.506381912457487	2.603448238754566	CCAATAAATCT
chr7	45642336	45642337	chr7:45642337:T:C	rs75112838	T	C	T	Hoxa9_MA0594.1	7	1	-	8.592331766899832	1.6893980931969126	GCCCTAAATCA
chr7	45677636	45677637	chr7:45677637:A:C	rs77043744	A	C	A	Hoxa9_MA0594.1	3	1	+	6.982587615172259	3.0543731906930187	GCCATCACTCA
chr7	45721751	45721752	chr7:45721752:G:A	rs10249706	G	A	G	Hoxa9_MA0594.1	5	1	-	7.864522907426146	5.444383900096458	ACCATCCATCA
chr7	45979243	45979244	chr7:45979244:G:A	rs118045680	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	46011293	46011294	chr7:46011294:C:T	rs10225437	C	T	c	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	46192345	46192346	chr7:46192346:C:G	rs2035571	C	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	46233652	46233653	chr7:46233653:C:A	rs1601540	C	A	C	Hoxa9_MA0594.1	5	1	+	11.101943655991207	11.655360678656521	ACCATCAATCA
chr7	46508757	46508758	chr7:46508758:G:C	rs34957490	G	C	G	Hoxa9_MA0594.1	0	1	-	8.00320666478695	8.4262430855653	CCCATAAATTT
chr7	46513360	46513361	chr7:46513361:A:T	rs116914745	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	46606923	46606924	chr7:46606924:C:T	chr7:46606924:C:T	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	46607136	46607137	chr7:46607137:A:G	rs10249036	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	46764391	46764392	chr7:46764392:G:A	rs190908184	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	46772461	46772462	chr7:46772462:A:G	rs73322770	A	G	A	Hoxa9_MA0594.1	4	1	-	8.431006454478752	1.5222516751635324	TCAATAAATCA
chr7	46847455	46847456	chr7:46847456:T:C	rs73091727	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr7	46850790	46850791	chr7:46850791:C:T	rs4404831	C	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	46955692	46955693	chr7:46955693:C:T	rs116034374	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	47046234	47046235	chr7:47046235:T:A	rs17172810	T	A	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	47046238	47046239	chr7:47046239:G:C	rs35862931	G	C	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	47105961	47105962	chr7:47105962:G:A	rs75843596	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	47264093	47264094	chr7:47264094:T:G	rs10951898	T	G	T	Hoxa9_MA0594.1	10	1	+	9.130625221022317	3.9634421224990817	GCTATAAATCT
chr7	47337190	47337191	chr7:47337191:G:A	rs374273941	G	A	G	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	47623521	47623522	chr7:47623522:C:T	rs569872096	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	47648824	47648825	chr7:47648825:C:T	rs10081231	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	47654810	47654811	chr7:47654811:G:A	rs73697722	G	A	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	47759393	47759394	chr7:47759394:G:C	rs17627595	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	48004362	48004363	chr7:48004363:A:C	rs78977999	A	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	48112659	48112660	chr7:48112660:C:T	rs57405662	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	48120366	48120367	chr7:48120367:T:A	rs10226546	T	A	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	48616463	48616464	chr7:48616464:T:C	rs10269521	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	48657346	48657347	chr7:48657347:G:A	rs11771405	G	A	A	Hoxa9_MA0594.1	1	1	-	9.632353768761673	8.74080400765128	ACCATCAATCT
chr7	49010911	49010912	chr7:49010912:A:G	rs13234991	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	49580927	49580928	chr7:49580928:G:A	rs6961052	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	49643831	49643832	chr7:49643832:T:C	rs145898454	T	C	T	Hoxa9_MA0594.1	4	1	+	7.632183602891756	0.723428823576536	ACCATCAAACA
chr7	49643836	49643837	chr7:49643837:C:A	rs73343919	C	A	C	Hoxa9_MA0594.1	9	1	+	7.632183602891756	4.564353769995664	ACCATCAAACA
chr7	50454722	50454723	chr7:50454723:G:A	rs4947980	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	50502228	50502229	chr7:50502229:G:C	rs880029	G	C	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	50595954	50595955	chr7:50595955:G:A	rs7802879	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	50645784	50645785	chr7:50645785:A:G	rs6974769	A	G	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	50679274	50679275	chr7:50679275:G:A	rs757999	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	50679289	50679290	chr7:50679290:C:T	rs61125116	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	50694347	50694348	chr7:50694348:T:A	rs2011899	T	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	51081899	51081900	chr7:51081900:A:C	rs6593324	A	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	51242158	51242159	chr7:51242159:T:C	rs191534946	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr7	51449695	51449696	chr7:51449696:A:G	rs13221079	A	G	a	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	51456326	51456327	chr7:51456327:A:G	rs12718497	A	G	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	51880893	51880894	chr7:51880894:G:A	rs57248172	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	51950880	51950881	chr7:51950881:T:C	rs17204439	T	C	T	Hoxa9_MA0594.1	8	1	+	8.773111023127315	1.8998229730274256	CAAATAAATCA
chr7	52053665	52053666	chr7:52053666:G:A	rs7792651	G	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr7	52120858	52120859	chr7:52120859:G:A	rs2953432	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	52270549	52270550	chr7:52270550:C:A	rs117837722	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	52831493	52831494	chr7:52831494:T:C	rs1863786	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr7	52832722	52832723	chr7:52832723:A:G	rs2965617	A	G	G	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	52857945	52857946	chr7:52857946:A:C	rs77737967	A	C	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	52903859	52903860	chr7:52903860:C:T	rs11773742	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	53983807	53983808	chr7:53983808:G:A	rs12666230	G	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	54090950	54090951	chr7:54090951:A:T	rs1524390	A	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	54481487	54481488	chr7:54481488:T:C	rs568197	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	54664184	54664185	chr7:54664185:T:G	rs1220778	T	G	G	Hoxa9_MA0594.1	4	1	+	9.08885592396711	2.180101144651889	ATAATCAATCA
chr7	54795438	54795439	chr7:54795439:C:T	rs28587170	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	55288299	55288300	chr7:55288300:C:A	rs12718954	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	55308113	55308114	chr7:55308114:T:C	rs114066043	T	C	T	Hoxa9_MA0594.1	7	1	-	8.247667105749517	1.344733432046597	ATCATGAATCA
chr7	55641510	55641511	chr7:55641511:T:C	rs946529962	T	C	.	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr7	55690070	55690071	chr7:55690071:T:A	rs62455751	T	A	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr7	55786982	55786983	chr7:55786983:C:T	rs6950112	C	T	.	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	55976255	55976256	chr7:55976256:T:C	rs116600510	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	55976284	55976285	chr7:55976285:C:T	rs75276564	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	56345031	56345032	chr7:56345032:T:G	rs10257173	T	G	T	Hoxa9_MA0594.1	8	1	+	7.786818122228043	2.8319221922895745	CCCATATATCT
chr7	56476295	56476296	chr7:56476296:G:T	rs561409095	G	T	g	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	57580635	57580636	chr7:57580636:T:C	rs10236410	T	C	.	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	63902622	63902623	chr7:63902623:A:G	rs6962010	A	G	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	64873787	64873788	chr7:64873788:T:C	rs867630	T	C	C	Hoxa9_MA0594.1	1	1	-	8.899082879431504	8.043175694344246	AACATCAATCA
chr7	65449682	65449683	chr7:65449683:T:G	rs6972850	T	G	N	Hoxa9_MA0594.1	8	1	+	11.967129168713758	7.0122332387752895	GCCATCAATCA
chr7	65449700	65449701	chr7:65449701:A:T	rs547729287	A	T	a	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	65892788	65892789	chr7:65892789:A:G	rs35850374	A	G	.	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	66149269	66149270	chr7:66149270:C:T	rs316316	C	T	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	66154116	66154117	chr7:66154117:G:A	rs1129531	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	66183743	66183744	chr7:66183744:A:G	rs4718316	A	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	66491296	66491297	chr7:66491297:T:C	rs62465403	T	C	t	Hoxa9_MA0594.1	7	1	-	8.774295001881132	1.871361328178212	GCAATAAATTA
chr7	66928399	66928400	chr7:66928400:A:G	rs10950055	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	66933211	66933212	chr7:66933212:C:T	rs111383434	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	67162014	67162015	chr7:67162015:G:T	rs12155051	G	T	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	67241410	67241411	chr7:67241411:A:G	rs7791642	A	G	.	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	67268265	67268266	chr7:67268266:G:T	rs11770046	G	T	.	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	67311950	67311951	chr7:67311951:T:A	rs62466395	T	A	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	67486494	67486495	chr7:67486495:C:T	rs77397787	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	67637365	67637366	chr7:67637366:T:C	rs12539606	T	C	c	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	67640510	67640511	chr7:67640511:T:C	rs6948969	T	C	c	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	68173451	68173452	chr7:68173452:T:A	rs62456633	T	A	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	68176869	68176870	chr7:68176870:A:G	rs75980220	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr7	68184859	68184860	chr7:68184860:T:G	rs10236956	T	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	68220531	68220532	chr7:68220532:T:C	rs6964267	T	C	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	68406360	68406361	chr7:68406361:G:A	rs62457505	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	68487491	68487492	chr7:68487492:T:C	rs903526	T	C	C	Hoxa9_MA0594.1	10	1	-	7.838158659038301	1.2013856732855324	GTCATCCATCA
chr7	68586192	68586193	chr7:68586193:C:T	rs7808041	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	68938273	68938274	chr7:68938274:G:A	rs62458558	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	69189394	69189395	chr7:69189395:C:A	rs73151375	C	A	c	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	69283752	69283753	chr7:69283753:T:G	rs112862609	T	G	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	69283768	69283769	chr7:69283769:C:A	rs117301900	C	A	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	69365937	69365938	chr7:69365938:G:T	rs1011630	G	T	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	70026041	70026042	chr7:70026042:A:G	rs11771768	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	70044284	70044285	chr7:70044285:A:G	rs6970670	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	70143683	70143684	chr7:70143684:G:A	rs1055536325	G	A	G	Hoxa9_MA0594.1	0	1	+	8.044303216718815	7.179117703996264	GTAATAAATCC
chr7	70238701	70238702	chr7:70238702:A:C	rs12698878	A	C	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	70271757	70271758	chr7:70271758:A:G	chr7:70271758:A:G	A	G	a	Hoxa9_MA0594.1	4	1	-	8.773111023127315	1.8643562438120942	CAAATAAATCA
chr7	70650896	70650897	chr7:70650897:A:G	rs10807724	A	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	70736621	70736622	chr7:70736622:A:G	rs73181096	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	71179357	71179358	chr7:71179358:G:A	rs2707419	G	A	G	Hoxa9_MA0594.1	2	1	-	9.764268392154055	7.84393730902683	GACATCAATCA
chr7	71208921	71208922	chr7:71208922:G:A	rs17592881	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	71329496	71329497	chr7:71329497:A:G	rs144749257	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	71352413	71352414	chr7:71352414:T:C	rs10271589	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	71414571	71414572	chr7:71414572:G:A	rs75497340	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	71521746	71521747	chr7:71521747:A:G	rs147560620	A	G	A	Hoxa9_MA0594.1	0	1	+	10.210393894880813	11.075579407603364	ATCATCAATCA
chr7	71521758	71521759	chr7:71521759:G:A	rs56670487	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	71871720	71871721	chr7:71871721:A:G	rs35591931	A	G	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	71949130	71949131	chr7:71949131:A:C	rs10215280	A	C	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	72025757	72025758	chr7:72025758:G:C	rs1525130	G	C	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	72029931	72029932	chr7:72029932:C:T	rs145896446	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	72454730	72454731	chr7:72454731:G:A	rs11765238	G	A	G	Hoxa9_MA0594.1	9	1	-	8.773111023127315	6.148397804543076	CAAATAAATCA
chr7	72454755	72454756	chr7:72454756:A:C	rs2909988	A	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	72524335	72524336	chr7:72524336:G:T	rs73702960	G	T	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	72554524	72554525	chr7:72554525:G:T	rs28693687	G	T	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	73507902	73507903	chr7:73507903:A:G	rs13221253	A	G	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	73684199	73684200	chr7:73684200:A:G	rs79097318	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	73812034	73812035	chr7:73812035:G:T	rs558388210	G	T	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	73844419	73844420	chr7:73844420:G:A	rs10225983	G	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	73879480	73879481	chr7:73879481:C:T	rs71556750	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	74008194	74008195	chr7:74008195:G:A	rs6971698	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	74466279	74466280	chr7:74466280:T:C	rs111748341	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	74993879	74993880	chr7:74993880:G:A	rs1398754789	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	75946007	75946008	chr7:75946008:C:T	rs28696382	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr7	76294400	76294401	chr7:76294401:A:C	chr7:76294401:A:C	A	C	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	76333851	76333852	chr7:76333852:T:C	rs2109857	T	C	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	76343554	76343555	chr7:76343555:T:G	rs6465096	T	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	76366057	76366058	chr7:76366058:G:A	rs143709670	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	76761062	76761063	chr7:76761063:T:G	rs143979869	T	G	.	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	76912292	76912293	chr7:76912293:C:T	rs3930019	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	77362695	77362696	chr7:77362696:A:G	rs10487622	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	77382724	77382725	chr7:77382725:C:T	rs6972651	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	77697430	77697431	chr7:77697431:G:T	rs3750127	G	T	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	77724710	77724711	chr7:77724711:C:T	rs55980640	C	T	c	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	78090435	78090436	chr7:78090436:A:C	rs80186520	A	C	A	Hoxa9_MA0594.1	8	1	-	9.546990161384072	4.592094231445603	GCCATTAATCA
chr7	78468834	78468835	chr7:78468835:T:C	rs11972334	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	78488998	78488999	chr7:78488999:T:A	rs1861224	T	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	78677614	78677615	chr7:78677615:C:A	rs73380234	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	78693181	78693182	chr7:78693182:T:C	rs12530747	T	C	T	Hoxa9_MA0594.1	4	1	+	7.529537515497607	0.6207827361823852	TCCATCAATCT
chr7	79187459	79187460	chr7:79187460:T:C	rs6961062	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	79406616	79406617	chr7:79406617:T:C	rs76553235	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr7	79554018	79554019	chr7:79554019:T:G	rs62459059	T	G	.	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	79767518	79767519	chr7:79767519:A:G	rs2714642	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	79828333	79828334	chr7:79828334:A:G	rs2707891	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	80113955	80113956	chr7:80113956:A:G	rs6949030	A	G	A	Hoxa9_MA0594.1	3	1	+	9.064232820513286	6.082436393104428	ACAATAAATCT
chr7	80278998	80278999	chr7:80278999:T:A	rs7792873	T	A	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr7	80626446	80626447	chr7:80626447:A:T	rs10247260	A	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	80741590	80741591	chr7:80741591:A:G	rs531924453	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	80748858	80748859	chr7:80748859:T:C	rs2886793	T	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	80833584	80833585	chr7:80833585:T:C	rs9942709	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	80833587	80833588	chr7:80833588:G:A	rs929346	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	81051873	81051874	chr7:81051874:C:T	rs1729456	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	81783738	81783739	chr7:81783739:A:G	rs7788432	A	G	a	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	81965088	81965089	chr7:81965089:A:C	rs10447881	A	C	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr7	82012594	82012595	chr7:82012595:G:A	rs183372197	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	82021237	82021238	chr7:82021238:A:G	rs184764433	A	G	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	82082208	82082209	chr7:82082209:G:A	rs6957415	G	A	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	82167319	82167320	chr7:82167320:G:A	rs17155962	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr7	82212364	82212365	chr7:82212365:T:A	rs79660137	T	A	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	82288948	82288949	chr7:82288949:G:A	rs116894339	G	A	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	82295639	82295640	chr7:82295640:C:A	rs77582645	C	A	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	82322668	82322669	chr7:82322669:T:C	rs42047	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr7	82443818	82443819	chr7:82443819:G:T	rs1052850959	G	T	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	82519574	82519575	chr7:82519575:C:T	rs75794101	C	T	C	Hoxa9_MA0594.1	6	1	+	7.738551051121958	8.134870038543875	CCAATACATCA
chr7	82563464	82563465	chr7:82563465:A:T	rs77566088	A	T	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	82688798	82688799	chr7:82688799:G:A	rs12707514	G	A	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	83191564	83191565	chr7:83191565:T:C	rs17286384	T	C	T	Hoxa9_MA0594.1	7	1	-	11.967129168713758	5.064195495010838	GCCATCAATCA
chr7	83361660	83361661	chr7:83361661:C:T	rs2371656	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	83579864	83579865	chr7:83579865:T:C	rs183345	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	83666357	83666358	chr7:83666358:C:A	rs7807686	C	A	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	83674367	83674368	chr7:83674368:T:C	rs565318	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	83803829	83803830	chr7:83803830:A:G	rs10260714	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	84114378	84114379	chr7:84114379:G:A	rs10231580	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	84281831	84281832	chr7:84281832:G:A	rs1006795	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	85301549	85301550	chr7:85301550:T:A	rs28631263	T	A	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	85358539	85358540	chr7:85358540:T:C	rs4281052	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	85713518	85713519	chr7:85713519:T:A	rs3934484	T	A	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	85987894	85987895	chr7:85987895:C:A	rs6465034	C	A	C	Hoxa9_MA0594.1	1	1	+	10.53382270774282	8.330961931183115	ACAATAAATCA
chr7	86212176	86212177	chr7:86212177:G:A	rs7782694	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	86407347	86407348	chr7:86407348:C:T	rs60735198	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr7	87236838	87236839	chr7:87236839:A:G	rs77633631	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	87474353	87474354	chr7:87474354:C:G	rs2888611	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	87542342	87542343	chr7:87542343:T:C	rs4728700	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	87564345	87564346	chr7:87564346:C:T	rs78711460	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr7	87785070	87785071	chr7:87785071:G:A	rs73200335	G	A	g	Hoxa9_MA0594.1	10	1	-	8.13705986561569	9.130625221022317	GCTATAAATCC
chr7	87873893	87873894	chr7:87873894:T:C	rs10280397	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	87964872	87964873	chr7:87964873:T:G	rs1637500	T	G	T	Hoxa9_MA0594.1	3	1	-	8.848095527589834	4.919881103110593	GACATAAATCT
chr7	87964878	87964879	chr7:87964879:A:G	rs536978494	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	88071559	88071560	chr7:88071560:G:A	rs12670301	G	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	88361575	88361576	chr7:88361576:A:G	rs4727162	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	88500212	88500213	chr7:88500213:C:T	rs181042	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	89730186	89730187	chr7:89730187:C:G	rs2428283	C	G	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr7	89914841	89914842	chr7:89914842:T:C	rs73211534	T	C	T	Hoxa9_MA0594.1	6	1	-	8.91937952935117	2.1017787435955126	CCCATCAATTA
chr7	90512588	90512589	chr7:90512589:G:T	rs12704547	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	90701712	90701713	chr7:90701713:A:G	rs773324962	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	90788141	90788142	chr7:90788142:C:T	rs17163201	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	90828707	90828708	chr7:90828708:T:A	rs2374369	T	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	90828727	90828728	chr7:90828728:A:G	rs5009746	A	G	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	91110461	91110462	chr7:91110462:C:T	rs803157	C	T	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	91113441	91113442	chr7:91113442:G:T	rs803159	G	T	G	Hoxa9_MA0594.1	1	1	-	10.057390948742912	7.854530172183207	GCCATAAATCC
chr7	91942230	91942231	chr7:91942231:G:T	rs73403710	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	92135266	92135267	chr7:92135267:A:G	rs936085028	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	92424186	92424187	chr7:92424187:G:C	rs189863548	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr7	92424937	92424938	chr7:92424938:T:G	rs138923631	T	G	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	92525219	92525220	chr7:92525220:T:A	chr7:92525220:T:A	T	A	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	92851945	92851946	chr7:92851946:G:A	rs141313583	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	93623087	93623088	chr7:93623088:T:C	rs957728	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	93945156	93945157	chr7:93945157:G:A	rs10241311	G	A	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr7	94157804	94157805	chr7:94157805:T:A	rs114984498	T	A	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	94304287	94304288	chr7:94304288:C:T	rs148346345	C	T	C	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	94397389	94397390	chr7:94397390:C:T	rs420702	C	T	C	Hoxa9_MA0594.1	9	1	+	9.182953099595478	6.5582398810112394	CTCATCAATCT
chr7	94415490	94415491	chr7:94415491:C:A	rs2250365	C	A	A	Hoxa9_MA0594.1	2	1	+	9.894648994041017	8.773111023127315	CACATAAATCA
chr7	94451853	94451854	chr7:94451854:G:A	rs74374003	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	94451868	94451869	chr7:94451869:C:A	rs10487261	C	A	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	94712696	94712697	chr7:94712697:A:G	rs28662328	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr7	94777112	94777113	chr7:94777113:A:G	rs4376436	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	94851630	94851631	chr7:94851631:G:T	rs12704767	G	T	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	94972555	94972556	chr7:94972556:C:T	rs13242203	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	95526465	95526466	chr7:95526466:T:G	rs12539224	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	95534766	95534767	chr7:95534767:G:C	rs62467698	G	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	95665558	95665559	chr7:95665559:C:T	rs772256686	C	T	C	Hoxa9_MA0594.1	0	1	-	10.159406543039145	9.294221030316594	GTCATAAATCT
chr7	95684106	95684107	chr7:95684107:A:C	rs321289	A	C	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	95980441	95980442	chr7:95980442:T:G	rs4729229	T	G	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	96303602	96303603	chr7:96303603:C:G	chr7:96303603:C:G	C	G	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	96304802	96304803	chr7:96304803:G:A	rs76151951	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	96495662	96495663	chr7:96495663:A:G	rs10238953	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr7	96623078	96623079	chr7:96623079:G:C	rs6970996	G	C	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	96734412	96734413	chr7:96734413:C:T	rs17497711	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	97016016	97016017	chr7:97016017:A:G	rs1207730	A	G	A	Hoxa9_MA0594.1	3	1	+	12.097509770600722	9.115713343191864	CCCATAAATCA
chr7	97467368	97467369	chr7:97467369:C:A	rs1003620	C	A	A	Hoxa9_MA0594.1	0	1	-	10.497539281484224	7.529537515497607	GCCATCAATCT
chr7	97872722	97872723	chr7:97872723:G:A	rs3757676	G	A	.	Hoxa9_MA0594.1	16	0	-	0	0	.
chr7	97973496	97973497	chr7:97973497:C:T	rs56323096	C	T	.	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	98463193	98463194	chr7:98463194:G:A	rs2161	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	98640581	98640582	chr7:98640582:A:G	rs10265038	A	G	G	Hoxa9_MA0594.1	7	1	+	8.729708420148697	1.826774746445777	GCCATCCATCA
chr7	98668455	98668456	chr7:98668456:G:A	rs547019833	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	98668461	98668462	chr7:98668462:G:A	rs6969174	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	98706070	98706071	chr7:98706071:T:C	rs4729477	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	98791146	98791147	chr7:98791147:G:T	rs4727411	G	T	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	98813671	98813672	chr7:98813672:T:C	rs77722506	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	99024248	99024249	chr7:99024249:C:T	rs6960083	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	99155534	99155535	chr7:99155535:T:C	rs4454228	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	99990356	99990357	chr7:99990357:T:C	rs6465759	T	C	.	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	100003809	100003810	chr7:100003810:C:T	chr7:100003810:C:T	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	100012897	100012898	chr7:100012898:C:G	rs1005577399	C	G	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	100026446	100026447	chr7:100026447:A:T	rs79152233	A	T	A	Hoxa9_MA0594.1	10	1	+	9.642272946632424	8.17268305940289	ATAATAAATCA
chr7	100049813	100049814	chr7:100049814:C:A	rs61522747	C	A	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr7	100103584	100103585	chr7:100103585:T:C	rs199955162	T	C	T	Hoxa9_MA0594.1	10	1	-	10.845591197800056	4.208818212047287	GCAATCAATCA
chr7	100138435	100138436	chr7:100138436:G:A	rs11771139	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	100984656	100984657	chr7:100984657:T:C	rs12530867	T	C	c	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	101107824	101107825	chr7:101107825:A:G	rs11972491	A	G	G	Hoxa9_MA0594.1	4	1	-	7.260118532919163	0.35136375360394306	GCCATCCATCT
chr7	101128670	101128671	chr7:101128671:C:T	chr7:101128671:C:T	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	101454084	101454085	chr7:101454085:T:C	rs1476653	T	C	C	Hoxa9_MA0594.1	4	1	+	8.169295346121482	1.2605405668062617	CCCCTAAATCA
chr7	101606234	101606235	chr7:101606235:C:T	rs76972281	C	T	C	Hoxa9_MA0594.1	1	1	-	9.03874180895376	9.894648994041017	CGCATAAATCA
chr7	101676454	101676455	chr7:101676455:C:T	rs893162377	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	101729544	101729545	chr7:101729545:A:C	rs77275637	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr7	102284649	102284650	chr7:102284650:T:C	rs2906711	T	C	C	Hoxa9_MA0594.1	10	1	+	10.074502860705875	9.080937505299248	CCCATCAATCT
chr7	102295174	102295175	chr7:102295175:T:A	rs73402325	T	A	T	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	102745712	102745713	chr7:102745713:T:G	rs189315613	T	G	N	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	102745727	102745728	chr7:102745728:G:A	rs141664396	G	A	N	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	103444640	103444641	chr7:103444641:G:A	rs6465921	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	103488958	103488959	chr7:103488959:A:C	rs117805575	A	C	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	103566786	103566787	chr7:103566787:T:C	rs362726	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	103652717	103652718	chr7:103652718:C:T	rs41276154	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	103785667	103785668	chr7:103785668:A:T	rs262355	A	T	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	104664814	104664815	chr7:104664815:C:A	rs4513902	C	A	A	Hoxa9_MA0594.1	5	1	+	9.126027407570612	9.679444430235927	GCCATCTATCA
chr7	104943590	104943591	chr7:104943591:C:T	rs770092357	C	T	c	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	104979115	104979116	chr7:104979116:A:G	rs6972229	A	G	G	Hoxa9_MA0594.1	7	1	+	7.7140234448373395	0.8110897711344192	CCTATAAATCC
chr7	105734505	105734506	chr7:105734506:T:C	rs73717262	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	105769791	105769792	chr7:105769792:C:T	rs60087520	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	105823227	105823228	chr7:105823228:A:C	rs75276948	A	C	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	106187827	106187828	chr7:106187828:C:T	rs10248549	C	T	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	106345844	106345845	chr7:106345845:G:A	rs113641485	G	A	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	106417951	106417952	chr7:106417952:T:C	rs17153076	T	C	T	Hoxa9_MA0594.1	5	1	-	9.196147443905666	6.680003632109054	GAAATAAATCA
chr7	106523869	106523870	chr7:106523870:G:A	rs17367541	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	106535823	106535824	chr7:106535824:G:A	rs28676577	G	A	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	106589504	106589505	chr7:106589505:T:C	rs41798	T	C	T	Hoxa9_MA0594.1	3	1	-	8.689816197693718	5.708019770284858	CTCATGAATCA
chr7	106806969	106806970	chr7:106806970:C:A	rs2392934	C	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr7	106863047	106863048	chr7:106863048:A:G	rs190504837	A	G	A	Hoxa9_MA0594.1	7	1	+	8.58753084576043	1.6845971720575106	ACCATAAATAA
chr7	107026305	107026306	chr7:107026306:A:C	rs56132452	A	C	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	107029842	107029843	chr7:107029843:G:A	rs6946733	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	107317591	107317592	chr7:107317592:T:C	rs74745121	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	107436579	107436580	chr7:107436580:T:C	rs79340623	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	107564634	107564635	chr7:107564635:T:C	chr7:107564635:T:C	T	C	T	Hoxa9_MA0594.1	0	1	-	8.260841894848062	9.126027407570612	ACCATCTATCA
chr7	107838641	107838642	chr7:107838642:C:T	rs58547687	C	T	c	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	107983492	107983493	chr7:107983493:C:T	rs75205671	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	107998291	107998292	chr7:107998292:C:G	rs58208921	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	108191075	108191076	chr7:108191076:T:C	rs6962066	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	108206758	108206759	chr7:108206759:C:T	rs13242621	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	108233498	108233499	chr7:108233499:T:C	rs2267877	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	108359158	108359159	chr7:108359159:A:G	rs2284286	A	G	A	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	108449705	108449706	chr7:108449706:T:C	rs995310	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	108452671	108452672	chr7:108452672:T:C	rs35617326	T	C	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	108454653	108454654	chr7:108454654:T:C	rs1221791431	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	108535896	108535897	chr7:108535897:T:C	rs7802956	T	C	t	Hoxa9_MA0594.1	11	0	+	0	0	.
chr7	110065326	110065327	chr7:110065327:G:T	rs1525513	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	110264549	110264550	chr7:110264550:T:A	rs116999470	T	A	T	Hoxa9_MA0594.1	6	1	-	7.747238652244652	4.9061368911015055	ATCATCAATCC
chr7	110407516	110407517	chr7:110407517:C:A	chr7:110407517:C:A	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	110508820	110508821	chr7:110508821:A:G	rs6972522	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	110508825	110508826	chr7:110508826:G:A	rs12705699	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	110851524	110851525	chr7:110851525:C:T	rs1528037	C	T	C	Hoxa9_MA0594.1	9	1	+	8.004489436656911	5.379776218072672	GCAATCTATCA
chr7	111086977	111086978	chr7:111086978:G:A	rs7800862	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	111174937	111174938	chr7:111174938:A:G	rs2189322	A	G	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr7	111262658	111262659	chr7:111262659:A:T	rs37736	A	T	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	111440184	111440185	chr7:111440185:T:G	rs10215967	T	G	T	Hoxa9_MA0594.1	4	1	+	9.581365958804113	2.672611179488892	CCCATGAATCA
chr7	111615973	111615974	chr7:111615974:A:T	rs6952484	A	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	111936706	111936707	chr7:111936707:G:C	rs17159023	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	112132159	112132160	chr7:112132160:A:C	rs569186226	A	C	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr7	112462490	112462491	chr7:112462491:C:T	rs1020805017	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	112462678	112462679	chr7:112462679:A:G	rs2529587	A	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	112562125	112562126	chr7:112562126:A:C	rs73432540	A	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	112567210	112567211	chr7:112567211:T:C	rs4473967	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	113343869	113343870	chr7:113343870:C:T	rs10500025	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	113343872	113343873	chr7:113343873:C:A	rs77320634	C	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	113343880	113343881	chr7:113343881:A:G	rs141270359	A	G	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr7	113503503	113503504	chr7:113503504:A:G	rs17415242	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	114007112	114007113	chr7:114007113:C:A	rs74756693	C	A	C	Hoxa9_MA0594.1	1	1	+	9.064232820513286	6.861372043953581	ACAATAAATCT
chr7	114229483	114229484	chr7:114229484:G:T	rs556732779	G	T	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	115154449	115154450	chr7:115154450:C:T	rs17137651	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	115355712	115355713	chr7:115355713:C:T	rs73717059	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	115357121	115357122	chr7:115357122:A:G	rs12706030	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	115387924	115387925	chr7:115387925:T:A	rs73201933	T	A	T	Hoxa9_MA0594.1	10	1	+	7.6543638533761875	9.123953740605721	CCCATTAATCT
chr7	115492018	115492019	chr7:115492019:G:A	rs79804846	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	115562595	115562596	chr7:115562596:A:T	rs78535226	A	T	A	Hoxa9_MA0594.1	4	1	-	7.992188342502578	1.0834335631873573	GGCATAAATCT
chr7	115634644	115634645	chr7:115634645:G:C	rs78411397	G	C	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	115984423	115984424	chr7:115984424:C:G	rs35695387	C	G	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	116143665	116143666	chr7:116143666:C:T	rs17244139	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	116176317	116176318	chr7:116176318:C:G	rs6949241	C	G	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	116176324	116176325	chr7:116176325:G:A	rs76765383	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	116554173	116554174	chr7:116554174:T:A	rs7804372	T	A	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	116778152	116778153	chr7:116778153:A:C	rs563631358	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	117091091	117091092	chr7:117091092:G:A	rs145115066	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	117795909	117795910	chr7:117795910:T:C	rs28626909	T	C	C	Hoxa9_MA0594.1	1	1	+	10.210393894880813	11.101943655991207	ATCATCAATCA
chr7	117929342	117929343	chr7:117929343:A:T	rs6466636	A	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	118076810	118076811	chr7:118076811:T:G	rs17140765	T	G	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	118573813	118573814	chr7:118573814:T:C	rs6466665	T	C	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	118719125	118719126	chr7:118719126:G:A	rs80182111	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	118746287	118746288	chr7:118746288:A:T	rs2689744	A	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	118970600	118970601	chr7:118970601:G:A	rs4518581	G	A	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	118995519	118995520	chr7:118995520:G:T	rs7788041	G	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	119664742	119664743	chr7:119664743:G:C	rs73211860	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	120990214	120990215	chr7:120990215:T:G	rs2721361	T	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	121076852	121076853	chr7:121076853:A:G	rs73221271	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	121105490	121105491	chr7:121105491:C:T	rs775861621	C	T	c	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	121157726	121157727	chr7:121157727:G:A	rs1444187177	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr7	121372717	121372718	chr7:121372718:T:G	rs2707463	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	121474110	121474111	chr7:121474111:C:A	rs80033001	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	121531074	121531075	chr7:121531075:G:C	rs1406192	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	121544766	121544767	chr7:121544767:C:A	rs140795341	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr7	121796532	121796533	chr7:121796533:G:A	rs10238868	G	A	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr7	122155795	122155796	chr7:122155796:G:A	rs157655	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	122976435	122976436	chr7:122976436:G:A	rs11762227	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	123231224	123231225	chr7:123231225:C:T	rs13437846	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr7	123749322	123749323	chr7:123749323:A:G	rs939580015	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	123797574	123797575	chr7:123797575:A:C	rs73224200	A	C	a	Hoxa9_MA0594.1	6	1	+	8.773111023127315	5.535690274562253	CAAATAAATCA
chr7	124074477	124074478	chr7:124074478:T:A	rs369491918	T	A	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	124088849	124088850	chr7:124088850:T:C	rs10269752	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr7	124106740	124106741	chr7:124106741:C:T	rs6967321	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr7	124402270	124402271	chr7:124402271:A:G	rs2040933	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr7	124459028	124459029	chr7:124459029:T:C	rs59834974	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr7	124630519	124630520	chr7:124630520:A:C	rs2049438	A	C	C	Hoxa9_MA0594.1	9	1	-	9.895832972794834	5.722215229678225	GCCATAAATTA
chr7	125386546	125386547	chr7:125386547:C:T	rs10085895	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	125386567	125386568	chr7:125386568:A:G	rs10085610	A	G	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr7	125629438	125629439	chr7:125629439:G:T	rs1419700	G	T	G	Hoxa9_MA0594.1	1	1	+	9.461778229732111	11.628996430268678	GGCATAAATCA
chr7	126449264	126449265	chr7:126449265:C:T	rs13240504	C	T	T	Hoxa9_MA0594.1	1	1	+	8.952964889792172	8.061415128681777	CCAATCAATCT
chr7	126665251	126665252	chr7:126665252:C:A	rs116998487	C	A	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	126848743	126848744	chr7:126848744:C:T	rs35505390	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	126930933	126930934	chr7:126930934:C:G	rs1419469	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	127245164	127245165	chr7:127245165:T:C	rs17866910	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	127364963	127364964	chr7:127364964:T:A	rs17874842	T	A	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	127485315	127485316	chr7:127485316:T:C	rs13228164	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr7	127539883	127539884	chr7:127539884:G:T	rs57867532	G	T	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	127596283	127596284	chr7:127596284:C:G	rs3735640	C	G	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr7	127820548	127820549	chr7:127820549:T:C	rs145314878	T	C	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	127884422	127884423	chr7:127884423:A:G	rs762874281	A	G	A	Hoxa9_MA0594.1	7	1	+	8.642730421240351	1.7397967475374307	GAAATCAATCA
chr7	128041366	128041367	chr7:128041367:A:T	rs6952784	A	T	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	128041367	128041368	chr7:128041368:T:C	rs6972847	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr7	128057022	128057023	chr7:128057023:G:C	rs73455779	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	128057039	128057040	chr7:128057040:T:C	rs1013414813	T	C	T	Hoxa9_MA0594.1	3	1	-	7.801541603022757	4.819745175613899	GACATGAATCA
chr7	128102969	128102970	chr7:128102970:T:G	rs12534062	T	G	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	128106135	128106136	chr7:128106136:G:A	rs322809	G	A	G	Hoxa9_MA0594.1	1	1	-	8.497369115614307	7.605819354503911	GCCATCAAACA
chr7	128141982	128141983	chr7:128141983:T:G	rs73226616	T	G	T	Hoxa9_MA0594.1	7	1	-	8.306671999370346	3.322130445828847	CCCATCCATCA
chr7	128323499	128323500	chr7:128323500:G:A	rs73230652	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr7	128406714	128406715	chr7:128406715:T:G	rs28364722	T	G	T	Hoxa9_MA0594.1	10	1	-	10.004402379582464	7.541247136946303	GCCATGAATCA
chr7	129081669	129081670	chr7:129081670:C:T	rs17425212	C	T	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	129101849	129101850	chr7:129101850:A:G	rs4731548	A	G	A	Hoxa9_MA0594.1	7	1	+	8.431006454478752	1.5280727807758319	TCAATAAATCA
chr7	129101858	129101859	chr7:129101859:C:T	rs4731549	C	T	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	129354782	129354783	chr7:129354783:A:C	rs4460315	A	C	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	129402674	129402675	chr7:129402675:A:C	rs564854066	A	C	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	129852122	129852123	chr7:129852123:A:C	rs2727461	A	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	130207825	130207826	chr7:130207826:T:C	rs141272715	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	130242763	130242764	chr7:130242764:C:T	rs1983491	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	130242766	130242767	chr7:130242767:G:A	chr7:130242767:G:A	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr7	130276674	130276675	chr7:130276675:T:C	rs17590	T	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	130350293	130350294	chr7:130350294:A:G	rs6957041	A	G	G	Hoxa9_MA0594.1	8	1	-	7.118210716167953	0.2449226660680628	CCCATGAATCC
chr7	130475478	130475479	chr7:130475479:C:G	rs61549458	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	130475485	130475486	chr7:130475486:C:T	rs59989563	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	130789740	130789741	chr7:130789741:A:T	rs67622126	A	T	A	Hoxa9_MA0594.1	6	1	+	10.763810917546127	7.922709156402981	ATCATAAATCA
chr7	130853805	130853806	chr7:130853806:G:A	rs78085191	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr7	130878953	130878954	chr7:130878954:T:C	chr7:130878954:T:C	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	131059816	131059817	chr7:131059817:C:G	rs12672658	C	G	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	131208929	131208930	chr7:131208930:A:G	rs34735202	A	G	a	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	131371881	131371882	chr7:131371882:G:A	rs9640866	G	A	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	131620587	131620588	chr7:131620588:C:G	rs1077246	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	131769240	131769241	chr7:131769241:T:C	rs2333894	T	C	C	Hoxa9_MA0594.1	10	1	-	7.632183602891756	0.9954106171389867	ACCATCAAACA
chr7	131786548	131786549	chr7:131786549:T:C	rs62470684	T	C	T	Hoxa9_MA0594.1	3	1	-	8.043175694344246	5.061379266935387	AGCATCAATCA
chr7	132001464	132001465	chr7:132001465:G:T	rs10231527	G	T	G	Hoxa9_MA0594.1	5	1	-	7.173729231511967	7.727146254177281	ACCCTCAATCA
chr7	132189739	132189740	chr7:132189740:T:C	rs10275752	T	C	T	Hoxa9_MA0594.1	7	1	-	8.702990986792262	1.8000573130893422	CCCATCTATCA
chr7	132211691	132211692	chr7:132211692:C:T	rs2341819	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	132299170	132299171	chr7:132299171:G:T	rs6957015	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	132374202	132374203	chr7:132374203:T:C	rs6467436	T	C	T	Hoxa9_MA0594.1	7	1	-	9.53100501591131	2.6280713422083903	CTAATCAATCA
chr7	132398630	132398631	chr7:132398631:C:A	rs76498803	C	A	C	Hoxa9_MA0594.1	9	1	+	8.843479834418904	5.775650001522812	ATTATAAATCA
chr7	132474373	132474374	chr7:132474374:A:C	rs113247352	A	C	a	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	132624832	132624833	chr7:132624833:C:T	rs6957896	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr7	132728264	132728265	chr7:132728265:C:T	rs640339	C	T	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	132739629	132739630	chr7:132739630:G:A	rs1337046043	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	132777535	132777536	chr7:132777536:T:C	rs73726444	T	C	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	132799290	132799291	chr7:132799291:C:T	rs56009006	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	132972919	132972920	chr7:132972920:A:T	rs7787607	A	T	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	133092411	133092412	chr7:133092412:G:T	rs10954405	G	T	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	133133601	133133602	chr7:133133602:C:T	rs10253530	C	T	c	Hoxa9_MA0594.1	21	0	-	0	0	.
chr7	133285919	133285920	chr7:133285920:C:T	rs11977339	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	133291893	133291894	chr7:133291894:A:G	rs66905772	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	133511370	133511371	chr7:133511371:G:C	rs6467495	G	C	C	Hoxa9_MA0594.1	9	1	-	7.786818122228043	0.9884871605271959	CCCATATATCT
chr7	133625772	133625773	chr7:133625773:G:C	rs7811015	G	C	G	Hoxa9_MA0594.1	0	1	+	8.729708420148697	8.306671999370346	GCCATCCATCA
chr7	133737125	133737126	chr7:133737126:C:T	rs10267901	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	134130637	134130638	chr7:134130638:A:G	rs11971451	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	134337808	134337809	chr7:134337809:T:A	rs2346975	T	A	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	134370494	134370495	chr7:134370495:G:T	rs187712009	G	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	134406681	134406682	chr7:134406682:G:A	rs741606	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	134480193	134480194	chr7:134480194:A:C	rs782537	A	C	C	Hoxa9_MA0594.1	9	1	+	7.983126471253447	11.050956304149539	GCCATAAATAT
chr7	134699251	134699252	chr7:134699252:G:A	rs77284408	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	134733068	134733069	chr7:134733069:A:G	rs10258722	A	G	A	Hoxa9_MA0594.1	3	1	+	8.351258581102782	5.369462153693923	CCAATAAATTA
chr7	134804752	134804753	chr7:134804753:G:T	rs35478375	G	T	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	134814232	134814233	chr7:134814233:G:T	rs9641997	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	135174252	135174253	chr7:135174253:A:C	rs292518	A	C	A	Hoxa9_MA0594.1	7	1	+	8.73221190369779	3.747670350156291	CTTATCAATCA
chr7	135180045	135180046	chr7:135180046:C:T	rs56233231	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr7	135196178	135196179	chr7:135196179:C:T	rs2288240	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	135281535	135281536	chr7:135281536:C:T	rs13224172	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr7	135287538	135287539	chr7:135287539:T:G	rs17168358	T	G	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr7	135621199	135621200	chr7:135621200:T:G	chr7:135621200:T:G	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	135878059	135878060	chr7:135878060:C:T	rs11762963	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	136189585	136189586	chr7:136189586:T:C	rs2033093	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	136290651	136290652	chr7:136290652:C:T	rs62489354	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	136528541	136528542	chr7:136528542:G:A	rs1863247	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr7	136698823	136698824	chr7:136698824:T:C	rs7794080	T	C	c	Hoxa9_MA0594.1	23	0	-	0	0	.
chr7	137018628	137018629	chr7:137018629:T:C	rs6967953	T	C	C	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	137043016	137043017	chr7:137043017:T:C	rs17168910	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	137146555	137146556	chr7:137146556:T:C	rs832971	T	C	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	137165479	137165480	chr7:137165480:T:C	rs4338046	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr7	137316817	137316818	chr7:137316818:G:A	rs141856512	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	137440168	137440169	chr7:137440169:T:C	rs1731913	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	138127177	138127178	chr7:138127178:G:C	rs78852479	G	C	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr7	138299400	138299401	chr7:138299401:A:G	rs357375	A	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	138352509	138352510	chr7:138352510:G:T	rs10262321	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr7	138719516	138719517	chr7:138719517:C:G	rs11764307	C	G	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr7	138739277	138739278	chr7:138739278:G:A	rs3734939	G	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	138739300	138739301	chr7:138739301:T:C	rs3734938	T	C	T	Hoxa9_MA0594.1	7	1	-	8.99912740272714	2.0961937290242205	TCCATCAATCA
chr7	138819959	138819960	chr7:138819960:C:T	rs12668843	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr7	138882972	138882973	chr7:138882973:T:C	rs6961366	T	C	t	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	138980354	138980355	chr7:138980355:C:T	rs55635149	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	138983041	138983042	chr7:138983042:A:G	rs6977460	A	G	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr7	139464565	139464566	chr7:139464566:C:T	rs11764434	C	T	c	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	139641848	139641849	chr7:139641849:A:G	rs17161078	A	G	A	Hoxa9_MA0594.1	5	1	+	9.037868572125442	6.521724760328831	GTAATAAATCT
chr7	139820490	139820491	chr7:139820491:G:A	rs76345931	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	140396356	140396357	chr7:140396357:C:T	rs9640465	C	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	140396374	140396375	chr7:140396375:C:G	rs9640466	C	G	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	140396402	140396403	chr7:140396403:C:T	rs9640467	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	140488579	140488580	chr7:140488580:C:T	rs73163266	C	T	T	Hoxa9_MA0594.1	3	1	-	8.985332741304902	11.967129168713758	GCCGTCAATCA
chr7	140672778	140672779	chr7:140672779:T:C	rs6464937	T	C	C	Hoxa9_MA0594.1	4	1	+	6.837082112140813	-0.07167266717440773	CCCATCCATCT
chr7	141385713	141385714	chr7:141385714:A:G	rs10215677	A	G	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	141864979	141864980	chr7:141864980:T:C	rs1285896	T	C	t	Hoxa9_MA0594.1	7	1	-	12.520546191379072	5.617612517676153	GCCATAAATCA
chr7	142322811	142322812	chr7:142322812:G:A	rs17162991	G	A	G	Hoxa9_MA0594.1	2	1	-	8.612424164967203	6.69209308183998	GTCATCAATCC
chr7	142348129	142348130	chr7:142348130:C:T	rs2855235	C	T	c	Hoxa9_MA0594.1	22	0	+	0	0	.
chr7	142355338	142355339	chr7:142355339:A:G	rs2854533	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	142355356	142355357	chr7:142355357:A:G	rs983455829	A	G	A	Hoxa9_MA0594.1	7	1	+	8.189387744188851	1.2864540704859315	CTCATCAATCC
chr7	142438345	142438346	chr7:142438346:A:T	rs141088258	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	142567644	142567645	chr7:142567645:C:T	rs12672113	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	142666087	142666088	chr7:142666088:A:G	rs4726553	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	142666088	142666089	chr7:142666089:T:C	rs4726554	T	C	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	142771004	142771005	chr7:142771005:C:T	rs62473563	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr7	143051107	143051108	chr7:143051108:A:G	rs7801166	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr7	143492080	143492081	chr7:143492081:G:C	rs137898637	G	C	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr7	143504826	143504827	chr7:143504827:C:T	rs2949751	C	T	c	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	143504863	143504864	chr7:143504864:C:T	rs55716333	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	144036907	144036908	chr7:144036908:T:C	rs7784532	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr7	144049650	144049651	chr7:144049651:A:G	rs55999989	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	144520000	144520001	chr7:144520001:C:T	rs10248004	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	144602056	144602057	chr7:144602057:T:C	rs17170241	T	C	C	Hoxa9_MA0594.1	8	1	+	10.60021510825185	3.7269270581519613	GCTATAAATCA
chr7	144776444	144776445	chr7:144776445:C:T	rs1731106	C	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr7	145249338	145249339	chr7:145249339:C:T	rs10952611	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	145293479	145293480	chr7:145293480:A:G	rs2015788	A	G	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	146121512	146121513	chr7:146121513:T:C	rs62504786	T	C	T	Hoxa9_MA0594.1	7	1	-	9.764268392154055	2.861334718451134	GACATCAATCA
chr7	147419398	147419399	chr7:147419399:G:A	rs826647	G	A	G	Hoxa9_MA0594.1	1	1	-	8.209854543006394	7.318304781895998	GCCATATATCT
chr7	147479095	147479096	chr7:147479096:T:C	rs4725734	T	C	T	Hoxa9_MA0594.1	6	1	-	10.507458459354975	3.6898576735993176	GTAATAAATCA
chr7	147509196	147509197	chr7:147509197:T:C	rs147628055	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	147747979	147747980	chr7:147747980:A:G	rs12112564	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	147771240	147771241	chr7:147771241:A:T	rs75967419	A	T	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr7	147776099	147776100	chr7:147776100:A:C	chr7:147776100:A:C	A	C	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	148037133	148037134	chr7:148037134:C:T	rs2527061	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	148211565	148211566	chr7:148211566:T:C	rs4520084	T	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	148211601	148211602	chr7:148211602:C:T	rs4513897	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	148535654	148535655	chr7:148535655:A:G	rs2717771	A	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	148688632	148688633	chr7:148688633:T:C	rs10257756	T	C	T	Hoxa9_MA0594.1	10	1	-	9.461778229732111	2.8250052439793425	GGCATAAATCA
chr7	149023612	149023613	chr7:149023613:T:C	rs12534095	T	C	-	Hoxa9_MA0594.1	7	1	-	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr7	149172158	149172159	chr7:149172159:C:T	rs1202455	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	149172184	149172185	chr7:149172185:G:A	rs4727027	G	A	G	Hoxa9_MA0594.1	1	1	-	8.034113823095115	7.1425640619847215	ACCATCAATAA
chr7	149626228	149626229	chr7:149626229:C:G	rs7783990	C	G	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	150355342	150355343	chr7:150355343:C:T	rs968869147	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr7	150359836	150359837	chr7:150359837:C:T	rs532748156	C	T	-	Hoxa9_MA0594.1	22	0	+	0	0	.
chr7	150439390	150439391	chr7:150439391:G:C	rs7777466	G	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	150444566	150444567	chr7:150444567:T:G	rs11764806	T	G	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr7	150488702	150488703	chr7:150488703:C:T	rs10242107	C	T	c	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr7	150564430	150564431	chr7:150564431:G:C	rs73727323	G	C	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	150901570	150901571	chr7:150901571:T:C	rs17173656	T	C	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	151085529	151085530	chr7:151085530:G:A	rs4725388	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr7	151228951	151228952	chr7:151228952:C:T	rs141065124	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	151318525	151318526	chr7:151318526:T:G	rs62492424	T	G	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr7	151445046	151445047	chr7:151445047:G:A	rs75790492	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	151460326	151460327	chr7:151460327:G:C	rs193167866	G	C	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	151460327	151460328	chr7:151460328:T:G	chr7:151460328:T:G	T	G	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	151470740	151470741	chr7:151470741:G:A	rs74418292	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	151609577	151609578	chr7:151609578:C:G	rs7792920	C	G	-	Hoxa9_MA0594.1	1	1	+	9.632353768761673	6.573585807114712	ACCATCAATCT
chr7	151611480	151611481	chr7:151611481:T:C	rs4726060	T	C	-	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr7	151668313	151668314	chr7:151668314:T:C	rs1362235	T	C	-	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	151736609	151736610	chr7:151736610:C:T	chr7:151736610:C:T	C	T	-	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr7	151905631	151905632	chr7:151905632:A:G	rs55845539	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	151944815	151944816	chr7:151944816:G:T	rs7785611	G	T	G	Hoxa9_MA0594.1	5	1	-	8.729708420148697	9.283125442814011	GCCATCCATCA
chr7	152028109	152028110	chr7:152028110:A:G	rs76030055	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	152136740	152136741	chr7:152136741:A:G	rs142171905	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	152335983	152335984	chr7:152335984:A:C	rs74819138	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr7	152513404	152513405	chr7:152513405:G:C	rs7806275	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr7	152587414	152587415	chr7:152587415:C:T	rs57395410	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr7	152587424	152587425	chr7:152587425:G:A	rs62494008	G	A	G	Hoxa9_MA0594.1	2	1	-	8.159236377169226	6.238905294042002	GTCATAAAACA
chr7	152668234	152668235	chr7:152668235:C:T	rs3218418	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr7	152717532	152717533	chr7:152717533:C:T	rs10265123	C	T	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr7	152860489	152860490	chr7:152860490:T:C	rs73490980	T	C	T	Hoxa9_MA0594.1	3	1	-	9.050786138279621	6.068989710870762	GCCATAAAACA
chr7	152947768	152947769	chr7:152947769:A:C	rs11974832	A	C	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr7	153070375	153070376	chr7:153070376:A:G	rs6958881	A	G	A	Hoxa9_MA0594.1	7	1	+	11.967129168713758	5.064195495010838	GCCATCAATCA
chr7	153172971	153172972	chr7:153172972:A:C	rs55973021	A	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	153206150	153206151	chr7:153206151:G:C	rs2312593	G	C	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr7	153408512	153408513	chr7:153408513:A:G	rs2083992	A	G	A	Hoxa9_MA0594.1	4	1	-	10.084422038576625	3.175667259261404	CTAATAAATCA
chr7	153454734	153454735	chr7:153454735:C:T	rs66641357	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	153567416	153567417	chr7:153567417:T:C	rs58193351	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr7	153628630	153628631	chr7:153628631:G:A	rs36046851	G	A	.	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	153628636	153628637	chr7:153628637:G:A	rs142780559	G	A	.	Hoxa9_MA0594.1	26	0	-	0	0	.
chr7	153886275	153886276	chr7:153886276:C:A	rs38981	C	A	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	154416182	154416183	chr7:154416183:G:A	rs4725541	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr7	154817346	154817347	chr7:154817347:G:A	rs4960620	G	A	g	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	154881006	154881007	chr7:154881007:G:A	rs3817519	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr7	154916790	154916791	chr7:154916791:C:T	rs114225235	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr7	155210953	155210954	chr7:155210954:A:C	rs12719668	A	C	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr7	155228718	155228719	chr7:155228719:G:C	rs79541239	G	C	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr7	155228739	155228740	chr7:155228740:T:C	rs56031075	T	C	C	Hoxa9_MA0594.1	8	1	+	8.88286440866876	2.009576358568872	GCAATGAATCA
chr7	155234087	155234088	chr7:155234088:C:T	rs10236527	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr7	155296032	155296033	chr7:155296033:T:G	rs2721	T	G	G	Hoxa9_MA0594.1	4	1	+	8.425059106811483	1.5163043274962626	CACATAAATCT
chr7	155312070	155312071	chr7:155312071:G:T	rs13223383	G	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	155376478	155376479	chr7:155376479:T:C	rs1421316	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	155414684	155414685	chr7:155414685:C:T	rs182167264	C	T	-	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr7	155414718	155414719	chr7:155414719:T:C	rs11768205	T	C	-	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	155414750	155414751	chr7:155414751:C:T	rs1231293390	C	T	C	Hoxa9_MA0594.1	2	1	+	9.764268392154055	7.84393730902683	GACATCAATCA
chr7	155414765	155414766	chr7:155414766:G:A	rs11772318	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	155414775	155414776	chr7:155414776:C:T	rs112215769	C	T	C	Hoxa9_MA0594.1	27	0	+	0	0	.
chr7	155511459	155511460	chr7:155511460:T:C	rs79996697	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	155849013	155849014	chr7:155849014:C:T	rs1225381	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr7	155872686	155872687	chr7:155872687:T:C	rs74798141	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr7	155927108	155927109	chr7:155927109:G:C	rs7791016	G	C	G	Hoxa9_MA0594.1	2	1	-	7.415122238259951	0.8912222505116119	CTCATCCATCA
chr7	155951557	155951558	chr7:155951558:C:G	rs62480403	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr7	156065835	156065836	chr7:156065836:T:C	rs4078489	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr7	156920595	156920596	chr7:156920596:G:A	rs112354039	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr7	157004248	157004249	chr7:157004249:T:C	rs1161147331	T	C	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr7	157021438	157021439	chr7:157021439:G:A	rs1490852637	G	A	g	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	157057768	157057769	chr7:157057769:A:G	rs28649708	A	G	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	157079100	157079101	chr7:157079101:T:C	rs2365999	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	157318615	157318616	chr7:157318616:G:A	rs76985996	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr7	157318619	157318620	chr7:157318620:C:A	rs74726638	C	A	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr7	157318620	157318621	chr7:157318621:C:T	rs115444417	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr7	157465681	157465682	chr7:157465682:G:T	rs11766634	G	T	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	157645139	157645140	chr7:157645140:A:G	rs1796272	A	G	G	Hoxa9_MA0594.1	4	1	-	8.899082879431504	1.9903281001162816	AACATCAATCA
chr7	157688357	157688358	chr7:157688358:A:G	rs10266233	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr7	157712404	157712405	chr7:157712405:G:A	rs115645793	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	157842229	157842230	chr7:157842230:C:T	rs7777198	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr7	157882015	157882016	chr7:157882016:T:C	rs4645466	T	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr7	157899036	157899037	chr7:157899037:G:C	rs1434987	G	C	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr7	158024354	158024355	chr7:158024355:A:G	rs4716881	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr7	158049172	158049173	chr7:158049173:G:A	rs74824587	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr7	158091906	158091907	chr7:158091907:G:A	rs57774330	G	A	-	Hoxa9_MA0594.1	1	1	-	6.837082112140813	5.945532351030417	CCCATCCATCT
chr7	158092083	158092084	chr7:158092084:G:A	rs377540472	G	A	g	Hoxa9_MA0594.1	28	0	-	0	0	.
chr7	158152230	158152231	chr7:158152231:G:A	rs73173628	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr7	158414532	158414533	chr7:158414533:C:T	rs555065658	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr7	158473753	158473754	chr7:158473754:A:G	rs1476201	A	G	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr7	158487760	158487761	chr7:158487761:A:G	rs79207561	A	G	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr7	158533681	158533682	chr7:158533682:G:A	rs60574959	G	A	G	Hoxa9_MA0594.1	3	1	+	7.515742854075367	10.497539281484224	GCCGTCAATCT
chr7	158623310	158623311	chr7:158623311:T:C	rs11760681	T	C	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr7	158681027	158681028	chr7:158681028:G:A	rs4909258	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr7	158824026	158824027	chr7:158824027:T:A	rs36067117	T	A	t	Hoxa9_MA0594.1	2	1	-	7.608170449234994	6.809377337021474	GCAATCCATCA
chr7	158864447	158864448	chr7:158864448:A:G	rs540943176	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr7	159098170	159098171	chr7:159098171:C:T	rs115475783	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr7	159127954	159127955	chr7:159127955:G:C	rs73169270	G	C	G	Hoxa9_MA0594.1	9	1	-	9.294221030316594	2.4958900686157466	ATCATAAATCT
chr7	159127969	159127970	chr7:159127970:C:T	rs74790021	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr7	159146796	159146797	chr7:159146797:C:T	rs111559132	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr7	159146939	159146940	chr7:159146940:A:G	rs13234747	A	G	A	Hoxa9_MA0594.1	7	1	+	8.234477646460217	1.3315439727572973	GTCATCTATCA
chr7	159147206	159147207	chr7:159147207:C:T	rs112827039	C	T	-	Hoxa9_MA0594.1	6	1	+	7.838158659038301	8.234477646460217	GTCATCCATCA
chr8	217809	217810	chr8:217810:G:A	rs150320721	G	A	.	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	275086	275087	chr8:275087:T:C	rs77043228	T	C	.	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	331571	331572	chr8:331572:T:C	rs6990287	T	C	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	333602	333603	chr8:333603:T:C	rs11136555	T	C	.	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	613387	613388	chr8:613388:C:T	rs79635084	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	626808	626809	chr8:626809:T:C	rs336432	T	C	C	Hoxa9_MA0594.1	7	1	-	8.397354331692144	1.4944206579892247	GATATAAATCA
chr8	686870	686871	chr8:686871:C:T	rs150264543	C	T	-	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	930054	930055	chr8:930055:G:C	rs6984680	G	C	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	1007975	1007976	chr8:1007976:G:A	rs12680707	G	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	1132738	1132739	chr8:1132739:T:G	rs2100320	T	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	1132749	1132750	chr8:1132750:A:G	rs2100321	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	1182060	1182061	chr8:1182061:T:C	rs17065743	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	1203015	1203016	chr8:1203016:A:G	rs12155802	A	G	G	Hoxa9_MA0594.1	3	1	+	6.837082112140813	3.8552856847319537	CCCATCCATCT
chr8	1203026	1203027	chr8:1203027:G:A	rs56070019	G	A	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	1243619	1243620	chr8:1243620:T:C	rs56357387	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	1245215	1245216	chr8:1245216:G:A	rs60603727	G	A	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	1245737	1245738	chr8:1245738:C:T	rs28582003	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	1258518	1258519	chr8:1258519:T:G	rs55653235	T	G	G	Hoxa9_MA0594.1	0	1	-	8.638788413355046	9.080937505299248	ACCATCAATCC
chr8	1285267	1285268	chr8:1285268:A:G	rs74417836	A	G	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	1355726	1355727	chr8:1355727:C:G	rs11784555	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	1455899	1455900	chr8:1455900:C:T	rs73672711	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	1528069	1528070	chr8:1528070:T:C	rs73172594	T	C	T	Hoxa9_MA0594.1	4	1	+	8.034113823095115	1.1253590437798962	ACCATCAATAA
chr8	1550264	1550265	chr8:1550265:G:A	chr8:1550265:G:A	G	A	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	1633672	1633673	chr8:1633673:C:T	rs6980953	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	1754301	1754302	chr8:1754302:A:G	rs13274339	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr8	1803071	1803072	chr8:1803072:T:C	rs6996586	T	C	T	Hoxa9_MA0594.1	3	1	-	9.764268392154055	6.782471964745194	GACATCAATCA
chr8	1967960	1967961	chr8:1967961:T:G	rs13259513	T	G	t	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	1967977	1967978	chr8:1967978:T:G	rs4876266	T	G	t	Hoxa9_MA0594.1	1	1	-	9.894648994041017	12.097509770600722	CACATAAATCA
chr8	2053988	2053989	chr8:2053989:C:G	rs9285034	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	2114071	2114072	chr8:2114072:G:C	rs73169411	G	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	2138078	2138079	chr8:2138079:C:A	chr8:2138079:C:A	C	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	2163105	2163106	chr8:2163106:A:C	rs17685326	A	C	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	2163904	2163905	chr8:2163905:G:A	rs17064803	G	A	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	2194617	2194618	chr8:2194618:A:G	rs10101831	A	G	a	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	2197825	2197826	chr8:2197826:G:A	rs317220	G	A	G	Hoxa9_MA0594.1	1	1	-	9.929418333235837	9.037868572125442	GCAATAAATCT
chr8	2482530	2482531	chr8:2482531:C:A	rs62489661	C	A	c	Hoxa9_MA0594.1	20	0	-	0	0	.
chr8	2482546	2482547	chr8:2482547:A:C	rs11775243	A	C	c	Hoxa9_MA0594.1	4	1	-	9.894648994041017	2.9858942147257963	CACATAAATCA
chr8	2491024	2491025	chr8:2491025:G:A	rs10866940	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	2501684	2501685	chr8:2501685:T:C	rs2897105	T	C	C	Hoxa9_MA0594.1	8	1	+	8.689816197693718	1.8165281475938282	CTCATGAATCA
chr8	2501693	2501694	chr8:2501694:G:C	rs144980013	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	2647736	2647737	chr8:2647737:T:C	rs10089592	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	2803414	2803415	chr8:2803415:T:C	rs74650283	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	2814289	2814290	chr8:2814290:G:C	rs7010216	G	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	2814319	2814320	chr8:2814320:G:C	rs7010347	G	C	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	2868450	2868451	chr8:2868451:C:A	rs17756913	C	A	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr8	3036254	3036255	chr8:3036255:C:G	rs147815433	C	G	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	3108805	3108806	chr8:3108806:T:C	rs3802292	T	C	T	Hoxa9_MA0594.1	3	1	-	8.082954538162921	5.101158110754062	TCCATAAATCT
chr8	3269041	3269042	chr8:3269042:A:G	rs13256957	A	G	A	Hoxa9_MA0594.1	7	1	+	8.484451549460127	1.581517875757207	GTAATCAATCT
chr8	3269399	3269400	chr8:3269400:G:T	rs13261870	G	T	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	3269430	3269431	chr8:3269431:C:T	rs13264018	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	3478208	3478209	chr8:3478209:C:T	rs10090206	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	3767636	3767637	chr8:3767637:G:A	rs61296875	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	3830181	3830182	chr8:3830182:T:A	rs2975378	T	A	A	Hoxa9_MA0594.1	5	1	-	8.66099466428206	5.687438634287056	TTCATAAATCA
chr8	3859689	3859690	chr8:3859690:G:T	rs75204667	G	T	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	4670345	4670346	chr8:4670346:G:A	rs77167802	G	A	g	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	4763494	4763495	chr8:4763495:A:G	rs7003205	A	G	a	Hoxa9_MA0594.1	8	1	-	8.007749574707272	1.1344615246073824	GTCATCAATAA
chr8	5438171	5438172	chr8:5438172:A:G	rs76425144	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	5486503	5486504	chr8:5486504:C:T	rs6999045	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	5599743	5599744	chr8:5599744:C:G	rs2733049	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	5614050	5614051	chr8:5614051:G:A	rs117892374	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	5675215	5675216	chr8:5675216:A:G	rs10503324	A	G	a	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	5675238	5675239	chr8:5675239:G:A	rs10503325	G	A	a	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	5745752	5745753	chr8:5745753:T:C	rs17454451	T	C	T	Hoxa9_MA0594.1	4	1	+	7.565650261440604	0.6568954821253845	GCCATAAAGCA
chr8	5855020	5855021	chr8:5855021:T:A	rs12679395	T	A	A	Hoxa9_MA0594.1	7	1	-	9.165841187632518	2.262907513929597	GTCATAAATCC
chr8	5855041	5855042	chr8:5855042:C:G	rs12676869	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	5916840	5916841	chr8:5916841:T:C	rs2703258	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	6063259	6063260	chr8:6063260:T:A	rs141080178	T	A	T	Hoxa9_MA0594.1	4	1	+	8.425059106811483	1.5163043274962626	CACATAAATCT
chr8	6344095	6344096	chr8:6344096:T:C	rs77607952	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	6532192	6532193	chr8:6532193:T:C	rs1984857	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	6605481	6605482	chr8:6605482:A:G	rs3020252	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	6662073	6662074	chr8:6662074:A:G	rs74717880	A	G	A	Hoxa9_MA0594.1	4	1	-	8.614832151347091	1.7060773720318705	CTAATAAATCT
chr8	6720656	6720657	chr8:6720657:A:C	rs2980691	A	C	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	6783921	6783922	chr8:6783922:C:G	rs113523170	C	G	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	6783922	6783923	chr8:6783923:A:G	rs2936537	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	6836344	6836345	chr8:6836345:A:C	rs79485561	A	C	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	6859234	6859235	chr8:6859235:A:G	rs6988759	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	6859264	6859265	chr8:6859265:C:G	rs10095208	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	6880260	6880261	chr8:6880261:C:T	rs2472143	C	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	6890363	6890364	chr8:6890364:G:A	rs2741717	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	7029540	7029541	chr8:7029541:T:G	rs11137086	T	G	.	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	7088810	7088811	chr8:7088811:T:C	rs55655912	T	C	.	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	7369307	7369308	chr8:7369308:A:G	rs3989715	A	G	a	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr8	7445634	7445635	chr8:7445635:C:T	rs2740056	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	8181092	8181093	chr8:8181093:C:A	rs866908201	C	A	.	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	8219767	8219768	chr8:8219768:C:T	rs371441513	C	T	.	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	8316375	8316376	chr8:8316376:C:T	rs28529742	C	T	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	8322848	8322849	chr8:8322849:T:C	rs1914823	T	C	T	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	8455809	8455810	chr8:8455810:C:T	rs2921069	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	8455819	8455820	chr8:8455820:T:A	rs116307497	T	A	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	8601070	8601071	chr8:8601071:C:T	rs184320384	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	8618245	8618246	chr8:8618246:A:C	rs9987367	A	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	8627691	8627692	chr8:8627692:C:T	rs117556026	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	8627702	8627703	chr8:8627703:C:G	rs187393452	C	G	C	Hoxa9_MA0594.1	9	1	+	7.991314647558364	1.1929836858575176	GTAATGAATCA
chr8	8635624	8635625	chr8:8635625:C:A	rs1522840	C	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	8669776	8669777	chr8:8669777:C:T	rs192026757	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	8957513	8957514	chr8:8957514:T:A	rs7843864	T	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	8973140	8973141	chr8:8973141:T:C	rs57719687	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	8994370	8994371	chr8:8994371:G:A	rs2953802	G	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	9037742	9037743	chr8:9037743:C:T	rs13276537	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	9071218	9071219	chr8:9071219:G:T	rs10091937	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	9071233	9071234	chr8:9071234:T:C	rs920974	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	9118016	9118017	chr8:9118017:G:C	rs17155257	G	C	C	Hoxa9_MA0594.1	1	1	-	8.4262430855653	5.367475123918339	GCCATAAATTT
chr8	9218341	9218342	chr8:9218342:G:A	rs2017182	G	A	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	9320700	9320701	chr8:9320701:G:A	rs570057990	G	A	.	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	9329013	9329014	chr8:9329014:C:G	rs4841134	C	G	c	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	9337159	9337160	chr8:9337160:G:A	rs56731460	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	9626410	9626411	chr8:9626411:G:A	rs10903315	G	A	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	10062177	10062178	chr8:10062178:G:A	rs115656383	G	A	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	10095243	10095244	chr8:10095244:G:A	rs182405042	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr8	10213364	10213365	chr8:10213365:A:G	rs62491577	A	G	a	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	10417316	10417317	chr8:10417317:T:G	rs17710558	T	G	T	Hoxa9_MA0594.1	6	1	-	11.075579407603364	7.838158659038301	GTCATCAATCA
chr8	10555796	10555797	chr8:10555797:G:C	rs7820528	G	C	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	10663989	10663990	chr8:10663990:A:G	rs28468400	A	G	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	10709319	10709320	chr8:10709320:T:G	rs12676319	T	G	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	10727633	10727634	chr8:10727634:A:G	rs7005905	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	10727651	10727652	chr8:10727652:T:C	rs7009920	T	C	T	Hoxa9_MA0594.1	8	1	+	7.811441225681866	0.9381531755819776	CTCATCTATCA
chr8	10772367	10772368	chr8:10772368:C:G	rs4240668	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	10806518	10806519	chr8:10806519:T:A	rs13265197	T	A	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	11064250	11064251	chr8:11064251:A:G	rs4407841	A	G	A	Hoxa9_MA0594.1	6	1	+	7.6543638533761875	0.8367630676205298	CCCATTAATCT
chr8	11368400	11368401	chr8:11368401:A:G	rs2736283	A	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	11461127	11461128	chr8:11461128:C:T	rs146862731	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	11514037	11514038	chr8:11514038:C:T	rs12674768	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	11564754	11564755	chr8:11564755:C:A	rs77902233	C	A	c	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	11564767	11564768	chr8:11564768:G:A	rs144735885	G	A	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr8	11589358	11589359	chr8:11589359:T:C	rs11778830	T	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	11594299	11594300	chr8:11594300:A:T	rs79519271	A	T	A	Hoxa9_MA0594.1	8	1	-	8.306671999370346	4.836911946270894	CCCATCCATCA
chr8	11594314	11594315	chr8:11594315:C:G	rs76079851	C	G	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	11645779	11645780	chr8:11645780:C:G	rs1564263	C	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr8	11658582	11658583	chr8:11658583:G:C	rs62489278	G	C	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	11679128	11679129	chr8:11679129:G:T	rs4840575	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	11688591	11688592	chr8:11688592:G:A	rs10110029	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	11723397	11723398	chr8:11723398:A:G	rs9329247	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	11990951	11990952	chr8:11990952:T:C	rs79433440	T	C	.	Hoxa9_MA0594.1	3	1	-	10.317685414819367	7.335888987410509	GACATAAATCA
chr8	12384012	12384013	chr8:12384013:G:T	rs2739979	G	T	a	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	12554998	12554999	chr8:12554999:G:C	rs4258027	G	C	.	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	12568337	12568338	chr8:12568338:C:T	rs2409954	C	T	.	Hoxa9_MA0594.1	0	1	+	8.425059106811483	5.880093761603215	CACATAAATCT
chr8	12568343	12568344	chr8:12568344:A:G	rs55667927	A	G	.	Hoxa9_MA0594.1	6	1	+	8.425059106811483	1.6074583210558264	CACATAAATCT
chr8	12668576	12668577	chr8:12668577:G:A	rs602409	G	A	.	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	12774816	12774817	chr8:12774817:G:A	rs7463211	G	A	g	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	12805543	12805544	chr8:12805544:T:C	rs10888128	T	C	t	Hoxa9_MA0594.1	1	1	+	8.247667105749517	9.139216866859913	ATCATGAATCA
chr8	12875811	12875812	chr8:12875812:C:T	rs2977171	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	12950843	12950844	chr8:12950844:A:G	rs542125136	A	G	A	Hoxa9_MA0594.1	5	1	+	9.02967993770463	6.513536125908021	CCCATAAATAA
chr8	13081041	13081042	chr8:13081042:C:T	rs59290063	C	T	C	Hoxa9_MA0594.1	3	1	-	8.224163582081468	11.205960009490326	CTCGTAAATCA
chr8	13109110	13109111	chr8:13109111:A:G	rs508958	A	G	A	Hoxa9_MA0594.1	7	1	+	7.2334010995627285	0.3304674258598083	CCCATCTATCT
chr8	13131252	13131253	chr8:13131253:C:T	rs184111451	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	13194358	13194359	chr8:13194359:C:T	rs750964640	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	13372897	13372898	chr8:13372898:T:A	rs17092222	T	A	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	13537504	13537505	chr8:13537505:A:C	chr8:13537505:A:C	A	C	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	13546793	13546794	chr8:13546794:T:C	rs7835899	T	C	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	13546835	13546836	chr8:13546836:C:T	rs7814354	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	13655342	13655343	chr8:13655343:C:A	rs7826779	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	13655357	13655358	chr8:13655358:A:T	rs13275815	A	T	A	Hoxa9_MA0594.1	5	1	+	9.452499902096816	6.478943872101814	AACATAAATCA
chr8	13743691	13743692	chr8:13743692:C:T	rs5012670	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	13814422	13814423	chr8:13814423:C:G	rs117918717	C	G	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	13814465	13814466	chr8:13814466:C:T	rs62493157	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	14070491	14070492	chr8:14070492:C:T	rs9650351	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	14155029	14155030	chr8:14155030:A:C	chr8:14155030:A:C	A	C	A	Hoxa9_MA0594.1	4	1	-	7.618418680842992	0.7096639015277719	GCTGTAAATCA
chr8	14166915	14166916	chr8:14166916:A:G	rs10102785	A	G	A	Hoxa9_MA0594.1	3	1	+	9.45271635848298	6.470919931074123	GCCATAAATAA
chr8	14428680	14428681	chr8:14428681:A:G	rs1903600	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	14428695	14428696	chr8:14428696:T:A	rs1903601	T	A	T	Hoxa9_MA0594.1	2	1	-	8.773111023127315	7.974317910913794	CAAATAAATCA
chr8	14592161	14592162	chr8:14592162:G:A	rs2036825	G	A	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr8	14661586	14661587	chr8:14661587:T:A	rs17119956	T	A	t	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	14661597	14661598	chr8:14661598:G:A	rs11203651	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	15148577	15148578	chr8:15148578:A:G	rs28439504	A	G	A	Hoxa9_MA0594.1	3	1	+	8.477230437406968	5.49543400999811	ACCATCAATTA
chr8	15162471	15162472	chr8:15162472:T:G	rs268413	T	G	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	15196226	15196227	chr8:15196227:C:T	rs62501991	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	15377545	15377546	chr8:15377546:T:C	rs148211595	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	15683271	15683272	chr8:15683272:C:T	rs3940343	C	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	16149885	16149886	chr8:16149886:A:C	rs351554	A	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	16346313	16346314	chr8:16346314:T:C	rs67998746	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	16499680	16499681	chr8:16499681:T:C	rs1830139	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	16754787	16754788	chr8:16754788:T:A	rs13281448	T	A	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	16759906	16759907	chr8:16759907:C:A	rs13252764	C	A	a	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	17424434	17424435	chr8:17424435:A:G	rs79246244	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	17474912	17474913	chr8:17474913:A:G	rs2588249	A	G	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	17538905	17538906	chr8:17538906:G:A	chr8:17538906:G:A	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	17538905	17538906	chr8:17538906:G:C	rs13259978	G	C	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	17581426	17581427	chr8:17581427:G:A	rs71526138	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	17618489	17618490	chr8:17618490:T:C	rs2283105	T	C	C	Hoxa9_MA0594.1	8	1	+	8.01767889594621	1.144390845846321	ACAATGAATCA
chr8	17662989	17662990	chr8:17662990:A:G	rs76912134	A	G	A	Hoxa9_MA0594.1	3	1	+	8.88286440866876	5.901067981259902	GCAATGAATCA
chr8	17678012	17678013	chr8:17678013:T:C	rs117560744	T	C	T	Hoxa9_MA0594.1	4	1	+	8.234477646460217	1.325722867144997	GTCATCTATCA
chr8	17721625	17721626	chr8:17721626:C:T	rs6982255	C	T	c	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	17793137	17793138	chr8:17793138:T:C	rs117638499	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	17836334	17836335	chr8:17836335:T:C	rs7017785	T	C	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	18055485	18055486	chr8:18055486:A:G	rs373258	A	G	A	Hoxa9_MA0594.1	3	1	+	8.73221190369779	5.750415476288931	CTTATCAATCA
chr8	18074194	18074195	chr8:18074195:C:T	rs3753118	C	T	C	Hoxa9_MA0594.1	5	1	+	9.08885592396711	6.668716916637422	ATAATCAATCA
chr8	18074195	18074196	chr8:18074196:A:T	rs60429850	A	T	A	Hoxa9_MA0594.1	6	1	+	9.08885592396711	6.247754162823964	ATAATCAATCA
chr8	18076519	18076520	chr8:18076520:T:C	rs7462991	T	C	T	Hoxa9_MA0594.1	0	1	-	9.294221030316594	10.159406543039145	ATCATAAATCT
chr8	18239150	18239151	chr8:18239151:C:A	rs6999439	C	A	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	18434931	18434932	chr8:18434932:G:T	rs28385408	G	T	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr8	18550143	18550144	chr8:18550144:G:C	rs17694550	G	C	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	18580939	18580940	chr8:18580940:T:C	rs80207364	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	18626987	18626988	chr8:18626988:G:A	rs1487740	G	A	a	Hoxa9_MA0594.1	5	1	+	8.247667105749517	10.763810917546127	ATCATGAATCA
chr8	18676598	18676599	chr8:18676599:A:G	rs11774205	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	18817385	18817386	chr8:18817386:C:T	rs2638611	C	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	18821194	18821195	chr8:18821195:T:G	rs1022758	T	G	T	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	18870438	18870439	chr8:18870439:A:G	rs3758141	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	19036803	19036804	chr8:19036804:T:A	rs898460497	T	A	T	Hoxa9_MA0594.1	4	1	+	7.991314647558364	1.0825598682431452	GTAATGAATCA
chr8	19047128	19047129	chr8:19047129:A:G	rs146030564	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	19106112	19106113	chr8:19106113:G:T	rs10091443	G	T	T	Hoxa9_MA0594.1	0	1	+	7.992188342502578	5.024186576515959	GGCATAAATCT
chr8	19151848	19151849	chr8:19151849:G:A	rs118060632	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	19176407	19176408	chr8:19176408:C:T	rs112472013	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	19184129	19184130	chr8:19184130:G:T	rs28576774	G	T	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	19192945	19192946	chr8:19192946:G:A	rs545684774	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	19199657	19199658	chr8:19199658:T:C	rs9657496	T	C	C	Hoxa9_MA0594.1	7	1	-	9.95404143668966	3.051107762986741	GTAATCAATCA
chr8	19254448	19254449	chr8:19254449:A:T	rs6990340	A	T	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	19254456	19254457	chr8:19254457:A:G	rs11774268	A	G	A	Hoxa9_MA0594.1	8	1	-	7.8728260628999855	0.9995380128000959	GCCATCAATTT
chr8	19286566	19286567	chr8:19286567:G:C	rs111249230	G	C	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	19294276	19294277	chr8:19294277:T:C	rs113200375	T	C	T	Hoxa9_MA0594.1	7	1	-	9.60598952037383	2.703055846670909	GTCATCAATCT
chr8	19307018	19307019	chr8:19307019:G:A	rs1193304	G	A	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	19414121	19414122	chr8:19414122:T:C	rs185026745	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	19414156	19414157	chr8:19414157:C:G	rs4541947	C	G	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	19501672	19501673	chr8:19501673:C:T	rs3923920	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	19621283	19621284	chr8:19621284:A:T	rs76160238	A	T	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	19688019	19688020	chr8:19688020:A:G	rs115638832	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr8	20076655	20076656	chr8:20076656:T:C	rs76311192	T	C	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr8	20114856	20114857	chr8:20114857:C:T	rs1039122	C	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	20272141	20272142	chr8:20272142:A:G	rs11784923	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	20272144	20272145	chr8:20272145:G:A	rs2410640	G	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	20634187	20634188	chr8:20634188:G:A	rs10099082	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	20691305	20691306	chr8:20691306:A:G	rs7839655	A	G	A	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	20774234	20774235	chr8:20774235:C:T	rs2597416	C	T	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	20914192	20914193	chr8:20914193:C:T	rs17093353	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	21094141	21094142	chr8:21094142:T:G	rs75796267	T	G	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr8	21170491	21170492	chr8:21170492:C:T	rs73623822	C	T	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	21281195	21281196	chr8:21281196:C:A	rs10110590	C	A	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr8	21340315	21340316	chr8:21340316:G:A	rs6988569	G	A	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	21441023	21441024	chr8:21441024:T:C	rs734364	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	21544567	21544568	chr8:21544568:A:G	rs62497439	A	G	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	21590625	21590626	chr8:21590626:G:C	rs11204179	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	22216117	22216118	chr8:22216118:A:C	rs7845248	A	C	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	22354242	22354243	chr8:22354243:T:A	rs66554545	T	A	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	22401461	22401462	chr8:22401462:A:G	rs73544036	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	22401483	22401484	chr8:22401484:A:G	rs548692799	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	22431579	22431580	chr8:22431580:T:C	rs7837700	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	22459387	22459388	chr8:22459388:C:T	rs6984908	C	T	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	22485886	22485887	chr8:22485887:T:G	rs11783838	T	G	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	22586577	22586578	chr8:22586578:G:A	rs73229816	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	22594744	22594745	chr8:22594745:G:C	rs61082641	G	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	22594745	22594746	chr8:22594746:A:T	rs58580064	A	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	22601476	22601477	chr8:22601477:A:G	rs117610214	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	22904083	22904084	chr8:22904084:G:C	rs28498602	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	22918341	22918342	chr8:22918342:G:A	rs10503722	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	23040890	23040891	chr8:23040891:C:T	rs7834266	C	T	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	23069000	23069001	chr8:23069001:C:G	rs576864679	C	G	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	23134440	23134441	chr8:23134441:A:G	rs55976000	A	G	A	Hoxa9_MA0594.1	3	1	+	11.050956304149539	8.069159876740681	GCCATAAATCT
chr8	23162140	23162141	chr8:23162141:T:C	rs7463799	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr8	23244571	23244572	chr8:23244572:T:A	rs11135710	T	A	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	23275899	23275900	chr8:23275900:T:C	rs7818295	T	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	23315539	23315540	chr8:23315540:A:G	rs4273857	A	G	A	Hoxa9_MA0594.1	3	1	+	9.736370122260793	6.754573694851935	CTCATAAATCT
chr8	23335093	23335094	chr8:23335094:G:A	rs6994800	G	A	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	23350752	23350753	chr8:23350753:T:C	rs56065531	T	C	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	23544556	23544557	chr8:23544557:G:A	rs7015818	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	23559620	23559621	chr8:23559621:T:C	rs1964070	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	23850655	23850656	chr8:23850656:G:A	rs77260821	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	23850671	23850672	chr8:23850672:C:T	rs118170086	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	24194452	24194453	chr8:24194453:T:G	rs4871913	T	G	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	24727072	24727073	chr8:24727073:C:T	rs191043394	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	24996328	24996329	chr8:24996329:A:C	rs13264292	A	C	A	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	25135825	25135826	chr8:25135826:A:G	rs11989652	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	25144243	25144244	chr8:25144244:A:T	rs2950303	A	T	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	25179823	25179824	chr8:25179824:G:C	rs186607244	G	C	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	25280886	25280887	chr8:25280887:G:A	rs2666160	G	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	25385455	25385456	chr8:25385456:T:C	rs925032	T	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	25577991	25577992	chr8:25577992:A:G	rs56255577	A	G	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	25620873	25620874	chr8:25620874:A:G	rs74908374	A	G	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	25922119	25922120	chr8:25922120:C:G	rs4872378	C	G	C	Hoxa9_MA0594.1	1	1	+	12.097509770600722	9.03874180895376	CCCATAAATCA
chr8	25962788	25962789	chr8:25962789:C:A	rs1048755902	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	26302498	26302499	chr8:26302499:C:T	rs7005099	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	26617806	26617807	chr8:26617807:C:T	rs73226184	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	26708168	26708169	chr8:26708169:A:T	rs7007717	A	T	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	26856189	26856190	chr8:26856190:C:G	rs580739	C	G	C	Hoxa9_MA0594.1	0	1	+	9.736370122260793	10.159406543039145	CTCATAAATCT
chr8	27050171	27050172	chr8:27050172:G:A	rs17056715	G	A	a	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	27081286	27081287	chr8:27081287:A:G	rs997984	A	G	a	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	27254430	27254431	chr8:27254431:T:A	rs12545925	T	A	A	Hoxa9_MA0594.1	16	0	+	0	0	.
chr8	27267104	27267105	chr8:27267105:A:G	rs73681508	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	27299700	27299701	chr8:27299701:G:A	rs567207103	G	A	a	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	27307356	27307357	chr8:27307357:C:T	rs76694908	C	T	c	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	27331301	27331302	chr8:27331302:C:A	rs36057699	C	A	c	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	27418131	27418132	chr8:27418132:T:G	rs750537	T	G	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	27459819	27459820	chr8:27459820:A:G	rs2280375	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	27724129	27724130	chr8:27724130:A:T	rs117235380	A	T	a	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	28203172	28203173	chr8:28203173:A:G	rs7821358	A	G	a	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr8	28203183	28203184	chr8:28203184:G:A	rs149612454	G	A	g	Hoxa9_MA0594.1	0	1	+	7.565650261440604	6.700464748718053	GCCATAAAGCA
chr8	28203211	28203212	chr8:28203212:T:C	rs7828675	T	C	c	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	28258862	28258863	chr8:28258863:G:A	rs78553440	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	28261742	28261743	chr8:28261743:C:T	rs2722887	C	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	28600974	28600975	chr8:28600975:A:C	rs111241309	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	28848912	28848913	chr8:28848913:A:C	chr8:28848913:A:C	A	C	A	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	29592428	29592429	chr8:29592429:A:G	rs79565427	A	G	A	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	29723306	29723307	chr8:29723307:A:G	rs60206381	A	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	29787754	29787755	chr8:29787755:A:G	rs73568248	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	29932342	29932343	chr8:29932343:C:T	rs7841598	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	29987948	29987949	chr8:29987949:T:G	rs4428059	T	G	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	29994933	29994934	chr8:29994934:C:G	rs2595040	C	G	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	30020212	30020213	chr8:30020213:G:A	rs991124	G	A	G	Hoxa9_MA0594.1	1	1	+	8.485324786288448	9.341231971375704	CGCATCAATCA
chr8	30093171	30093172	chr8:30093172:G:T	rs73224572	G	T	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	30140578	30140579	chr8:30140579:C:G	rs12678118	C	G	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr8	30189226	30189227	chr8:30189227:C:G	rs968273209	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	30320584	30320585	chr8:30320585:G:A	rs76035302	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	31286255	31286256	chr8:31286256:G:A	rs78913979	G	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	31673026	31673027	chr8:31673027:A:G	rs56233954	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	32221584	32221585	chr8:32221585:C:T	rs1383965	C	T	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	32331886	32331887	chr8:32331887:T:C	rs147881091	T	C	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	32440663	32440664	chr8:32440664:G:C	rs1579033	G	C	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	32563868	32563869	chr8:32563869:A:G	rs73234147	A	G	A	Hoxa9_MA0594.1	4	1	-	11.628996430268678	4.720241650953457	GTCATAAATCA
chr8	32568224	32568225	chr8:32568225:C:G	rs4733132	C	G	C	Hoxa9_MA0594.1	2	1	+	10.185770791426988	3.661870803678649	ACCATAAATCT
chr8	32583577	32583578	chr8:32583578:A:G	rs66877262	A	G	A	Hoxa9_MA0594.1	4	1	-	7.118210716167953	0.20945593685273134	CCCATGAATCC
chr8	32589363	32589364	chr8:32589364:G:A	rs2439292	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	32838127	32838128	chr8:32838128:T:C	rs4733385	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	33071255	33071256	chr8:33071256:T:G	rs116626812	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	33203893	33203894	chr8:33203894:A:G	rs10092532	A	G	A	Hoxa9_MA0594.1	3	1	+	8.232403979495325	5.250607552086466	CTCATTAATCA
chr8	33574751	33574752	chr8:33574752:A:G	rs187200200	A	G	A	Hoxa9_MA0594.1	6	1	+	9.929418333235837	3.11181754748018	GCAATAAATCT
chr8	33896398	33896399	chr8:33896399:C:T	rs67067119	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	33943925	33943926	chr8:33943926:G:A	rs187396446	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	34398480	34398481	chr8:34398481:A:G	rs76083813	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	34501053	34501054	chr8:34501054:G:C	rs112476302	G	C	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	35249219	35249220	chr8:35249220:A:G	rs13279514	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	35313590	35313591	chr8:35313591:T:C	rs2980408	T	C	T	Hoxa9_MA0594.1	7	1	-	9.95404143668966	3.051107762986741	GTAATCAATCA
chr8	36976341	36976342	chr8:36976342:T:G	rs3015786	T	G	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	37020219	37020220	chr8:37020220:G:A	rs145406720	G	A	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr8	37099791	37099792	chr8:37099792:G:A	rs16885903	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	37100383	37100384	chr8:37100384:C:G	rs145806406	C	G	C	Hoxa9_MA0594.1	1	1	+	6.837082112140813	3.7783141504938516	CCCATCCATCT
chr8	37147897	37147898	chr8:37147898:T:C	rs17405160	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	37225049	37225050	chr8:37225050:G:A	rs473731	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	37326167	37326168	chr8:37326168:C:T	rs446276	C	T	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	37452525	37452526	chr8:37452526:A:G	rs78932743	A	G	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	37479572	37479573	chr8:37479573:C:T	rs10504007	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	37539908	37539909	chr8:37539909:T:C	rs75348464	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	37547031	37547032	chr8:37547032:G:A	rs2843758	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	37547204	37547205	chr8:37547205:C:T	rs147394377	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	37570015	37570016	chr8:37570016:G:T	rs73675858	G	T	G	Hoxa9_MA0594.1	5	1	+	8.08407129645524	7.626659078256848	GCTATGAATCA
chr8	37638167	37638168	chr8:37638168:G:A	rs149047481	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	37727365	37727366	chr8:37727366:C:A	rs117052561	C	A	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	37879515	37879516	chr8:37879516:C:T	rs4976895	C	T	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	37914026	37914027	chr8:37914027:T:G	rs55717729	T	G	T	Hoxa9_MA0594.1	4	1	+	7.541247136946303	0.6324923576310819	GCCATGAATCC
chr8	38034542	38034543	chr8:38034543:A:G	rs62503904	A	G	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	38037140	38037141	chr8:38037141:C:A	rs115677666	C	A	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	38129155	38129156	chr8:38129156:T:C	rs76191429	T	C	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	38502010	38502011	chr8:38502011:C:G	rs35804490	C	G	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	38732600	38732601	chr8:38732601:T:C	rs552523063	T	C	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	38865620	38865621	chr8:38865621:A:G	rs115685887	A	G	A	Hoxa9_MA0594.1	5	1	+	8.561166597372587	6.045022785575976	GTCATAAATAA
chr8	38869945	38869946	chr8:38869946:G:A	rs7003661	G	A	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	39533296	39533297	chr8:39533297:C:T	rs67882526	C	T	.	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	39581998	39581999	chr8:39581999:T:C	rs10108019	T	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	39941387	39941388	chr8:39941388:T:C	rs188975331	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	39942774	39942775	chr8:39942775:G:A	rs34137953	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	39944039	39944040	chr8:39944040:G:A	rs558697411	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	40099944	40099945	chr8:40099945:T:C	rs72633023	T	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr8	40230915	40230916	chr8:40230916:A:G	rs140389985	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	40514943	40514944	chr8:40514944:A:C	rs1429956	A	C	A	Hoxa9_MA0594.1	10	1	+	8.260841894848062	5.797686652211901	ACCATCTATCA
chr8	40698332	40698333	chr8:40698333:A:G	rs7012695	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	40731181	40731182	chr8:40731182:G:T	rs10958632	G	T	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	40733827	40733828	chr8:40733828:A:G	rs62497412	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	40984573	40984574	chr8:40984574:C:T	rs77578639	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	41045975	41045976	chr8:41045976:C:T	rs35797229	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	41072422	41072423	chr8:41072423:A:G	rs11774707	A	G	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	41250039	41250040	chr8:41250040:T:C	rs10441601	T	C	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	41325204	41325205	chr8:41325205:G:A	rs1158696	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	41452826	41452827	chr8:41452827:T:C	rs1559737	T	C	C	Hoxa9_MA0594.1	7	1	-	7.260118532919163	0.35718485921624316	GCCATCCATCT
chr8	41713223	41713224	chr8:41713224:C:T	rs763579018	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	42568156	42568157	chr8:42568157:A:G	rs2084710	A	G	A	Hoxa9_MA0594.1	4	1	-	9.064232820513286	2.1554780411980654	ACAATAAATCT
chr8	42682986	42682987	chr8:42682987:A:C	rs112185955	A	C	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	42694838	42694839	chr8:42694839:G:A	rs13277254	G	A	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	42909988	42909989	chr8:42909989:G:A	rs1625050	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	43052290	43052291	chr8:43052291:C:G	rs77974391	C	G	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	43557901	43557902	chr8:43557902:T:C	rs147406553	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	47562954	47562955	chr8:47562955:G:A	rs56092229	G	A	G	Hoxa9_MA0594.1	6	1	-	8.391575681703616	8.787894669125532	GTCATACATCA
chr8	47659924	47659925	chr8:47659925:C:T	rs183336442	C	T	C	Hoxa9_MA0594.1	2	1	+	7.1129682170592226	5.192637133932001	CCCATAACTCA
chr8	47659945	47659946	chr8:47659946:A:G	rs958134469	A	G	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	48668460	48668461	chr8:48668461:A:G	rs7003444	A	G	A	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	49093198	49093199	chr8:49093199:T:C	rs341829	T	C	T	Hoxa9_MA0594.1	6	1	-	9.764268392154055	2.946667606398397	GACATCAATCA
chr8	49111307	49111308	chr8:49111308:G:A	rs12548464	G	A	G	Hoxa9_MA0594.1	2	1	-	9.452499902096816	7.532168818969594	AACATAAATCA
chr8	49398239	49398240	chr8:49398240:G:T	rs7836383	G	T	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr8	50000054	50000055	chr8:50000055:C:A	rs10957737	C	A	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	50482094	50482095	chr8:50482095:T:C	rs896218979	T	C	T	Hoxa9_MA0594.1	10	1	+	8.061415128681777	7.0678497732751495	CTAATCAATCT
chr8	50643117	50643118	chr8:50643118:G:T	rs10958003	G	T	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr8	50841960	50841961	chr8:50841961:T:C	rs11777012	T	C	T	Hoxa9_MA0594.1	7	1	-	8.450866189019125	1.5479325153162042	GTCATCAATTA
chr8	51059632	51059633	chr8:51059633:A:G	rs62508520	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	51396014	51396015	chr8:51396015:A:G	rs2977008	A	G	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	51930319	51930320	chr8:51930320:G:A	rs17284746	G	A	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	52146881	52146882	chr8:52146882:C:T	rs78815764	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	52146925	52146926	chr8:52146926:G:A	rs3891723	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	52249640	52249641	chr8:52249641:A:T	rs16917562	A	T	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	52391463	52391464	chr8:52391464:C:T	rs35361856	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	52628885	52628886	chr8:52628886:G:A	rs35085480	G	A	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	52631432	52631433	chr8:52631433:C:T	rs73595477	C	T	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	53032534	53032535	chr8:53032535:C:A	rs57772121	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	53533704	53533705	chr8:53533705:T:C	rs10958372	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	53931052	53931053	chr8:53931053:C:G	rs2128821	C	G	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	54338762	54338763	chr8:54338763:G:A	rs8181030	G	A	G	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	54573094	54573095	chr8:54573095:A:T	rs11787436	A	T	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	54629582	54629583	chr8:54629583:C:T	rs113793810	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	55058136	55058137	chr8:55058137:T:G	rs2726426	T	G	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	55212931	55212932	chr8:55212932:C:A	rs13272822	C	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	55237808	55237809	chr8:55237809:G:A	rs7462267	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	55687217	55687218	chr8:55687218:G:A	rs4738393	G	A	g	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	56185690	56185691	chr8:56185691:G:A	rs36077344	G	A	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	56393293	56393294	chr8:56393294:G:A	rs73604215	G	A	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	56454291	56454292	chr8:56454292:T:G	rs28622985	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	56454302	56454303	chr8:56454303:A:G	rs34079032	A	G	A	Hoxa9_MA0594.1	8	1	+	9.050786138279621	7.565650261440604	GCCATAAAACA
chr8	56587277	56587278	chr8:56587278:T:C	rs1440749	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	56682395	56682396	chr8:56682396:G:A	rs75523753	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	56785930	56785931	chr8:56785931:G:T	rs353727	G	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	56820230	56820231	chr8:56820231:G:A	rs78437243	G	A	G	Hoxa9_MA0594.1	5	1	+	7.643262731242535	10.159406543039145	GTCATGAATCT
chr8	56821020	56821021	chr8:56821021:C:T	chr8:56821021:C:T	C	T	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	56844264	56844265	chr8:56844265:G:A	rs954264	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	56844298	56844299	chr8:56844299:C:G	rs954266	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	57561337	57561338	chr8:57561338:G:A	rs116403339	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	57564502	57564503	chr8:57564503:G:T	rs56218904	G	T	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	57588123	57588124	chr8:57588124:G:A	rs73603723	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	57714153	57714154	chr8:57714154:T:G	rs4400371	T	G	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	57841424	57841425	chr8:57841425:C:T	rs184335208	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	58195903	58195904	chr8:58195904:T:C	rs149466980	T	C	T	Hoxa9_MA0594.1	1	1	+	8.247667105749517	9.139216866859913	ATCATGAATCA
chr8	58244324	58244325	chr8:58244325:T:C	rs78710358	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	58244700	58244701	chr8:58244701:T:C	rs78833945	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	58281753	58281754	chr8:58281754:G:A	rs13249339	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	58285196	58285197	chr8:58285197:G:A	rs111787389	G	A	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	58355891	58355892	chr8:58355892:A:G	rs2925667	A	G	A	Hoxa9_MA0594.1	6	1	-	7.811441225681866	7.415122238259951	CTCATCTATCA
chr8	58414275	58414276	chr8:58414276:T:C	rs7829017	T	C	T	Hoxa9_MA0594.1	3	1	-	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr8	58594795	58594796	chr8:58594796:T:C	rs73250303	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	59054717	59054718	chr8:59054718:T:A	rs541859729	T	A	T	Hoxa9_MA0594.1	4	1	+	8.581246790906087	1.672492011590868	CTCATAAATTA
chr8	59137938	59137939	chr8:59137939:G:A	rs3122648	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	59761477	59761478	chr8:59761478:A:T	rs2326443	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	59767462	59767463	chr8:59767463:C:T	rs1511027	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	60255048	60255049	chr8:60255049:A:G	rs6996114	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	60281979	60281980	chr8:60281980:T:G	rs6990370	T	G	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	60808010	60808011	chr8:60808011:G:A	chr8:60808011:G:A	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr8	60902298	60902299	chr8:60902299:T:C	rs4738842	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	60910658	60910659	chr8:60910659:G:A	rs62525901	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	60965025	60965026	chr8:60965026:A:T	rs535675346	A	T	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	61376203	61376204	chr8:61376204:T:C	rs117666125	T	C	T	Hoxa9_MA0594.1	7	1	-	8.01767889594621	1.11474522224329	ACAATGAATCA
chr8	61453512	61453513	chr8:61453513:A:G	rs6992756	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	61563666	61563667	chr8:61563667:G:A	rs10096503	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr8	61734193	61734194	chr8:61734194:A:G	rs62505988	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	61946762	61946763	chr8:61946763:G:A	rs58599260	G	A	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	62097703	62097704	chr8:62097704:T:A	rs978255	T	A	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	62617866	62617867	chr8:62617867:G:A	rs1871590	G	A	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	63950601	63950602	chr8:63950602:G:T	rs779253929	G	T	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	64363646	64363647	chr8:64363647:G:T	rs298193	G	T	T	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	64580401	64580402	chr8:64580402:T:A	rs768488777	T	A	t	Hoxa9_MA0594.1	3	1	-	8.074332694835956	1.231596052228268	CCCATCAAACA
chr8	64668303	64668304	chr8:64668304:C:G	rs16931360	C	G	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	65224940	65224941	chr8:65224941:A:G	rs10283265	A	G	A	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	65842279	65842280	chr8:65842280:C:T	rs899498250	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	65842286	65842287	chr8:65842287:G:C	chr8:65842287:G:C	G	C	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr8	65960839	65960840	chr8:65960840:A:G	rs56665861	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	66042379	66042380	chr8:66042380:C:A	rs2357666	C	A	A	Hoxa9_MA0594.1	5	1	-	8.01767889594621	7.560266677747817	ACAATGAATCA
chr8	66179143	66179144	chr8:66179144:A:G	rs3176921	A	G	G	Hoxa9_MA0594.1	7	1	+	9.506381912457487	2.603448238754566	CCAATAAATCT
chr8	66186501	66186502	chr8:66186502:A:C	rs1870393	A	C	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	66284144	66284145	chr8:66284145:A:G	rs76056996	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	66712069	66712070	chr8:66712070:G:A	rs112281853	G	A	G	Hoxa9_MA0594.1	2	1	-	7.6543638533761875	5.734032770248964	CCCATTAATCT
chr8	67263112	67263113	chr8:67263113:A:G	rs16933220	A	G	A	Hoxa9_MA0594.1	5	1	+	9.256408009457576	6.7402641976609665	CCCATATATCA
chr8	67307328	67307329	chr8:67307329:C:A	rs10957384	C	A	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr8	67968624	67968625	chr8:67968625:T:C	rs188980914	T	C	T	Hoxa9_MA0594.1	4	1	+	7.968539260925265	1.0597844816100452	CTCATACATCA
chr8	68094566	68094567	chr8:68094567:T:C	rs13262561	T	C	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr8	68203276	68203277	chr8:68203277:T:C	rs7838512	T	C	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	68369269	68369270	chr8:68369270:G:A	rs7001418	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	68391833	68391834	chr8:68391834:C:T	rs2243700	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	68768033	68768034	chr8:68768034:A:G	rs2953969	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	68783707	68783708	chr8:68783708:G:A	rs143736862	G	A	G	Hoxa9_MA0594.1	9	1	-	9.764268392154055	7.139555173569815	GACATCAATCA
chr8	68789896	68789897	chr8:68789897:G:C	rs73270258	G	C	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	68887933	68887934	chr8:68887934:C:G	rs7825981	C	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr8	69061765	69061766	chr8:69061766:C:A	rs2217103	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	69396882	69396883	chr8:69396883:A:C	chr8:69396883:A:C	A	C	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	69516629	69516630	chr8:69516630:T:C	rs4737282	T	C	C	Hoxa9_MA0594.1	4	1	+	8.58753084576043	1.6787760664452103	ACCATAAATAA
chr8	69677458	69677459	chr8:69677459:G:A	rs62512220	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	69787394	69787395	chr8:69787395:T:G	rs10110400	T	G	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	69787436	69787437	chr8:69787437:T:A	rs2890467	T	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr8	70088856	70088857	chr8:70088857:T:G	rs79721546	T	G	T	Hoxa9_MA0594.1	8	1	+	11.39900822046537	6.444112290526903	GCAATAAATCA
chr8	71010966	71010967	chr8:71010967:G:A	rs2639957	G	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr8	71561655	71561656	chr8:71561656:T:A	rs1424864	T	A	A	Hoxa9_MA0594.1	1	1	+	9.708665347141455	8.397354331692144	GTTATAAATCA
chr8	71606938	71606939	chr8:71606939:A:C	rs1544844	A	C	A	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	71830666	71830667	chr8:71830667:T:A	rs10113854	T	A	T	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	71863306	71863307	chr8:71863307:C:T	rs73689409	C	T	C	Hoxa9_MA0594.1	5	1	+	8.027829768240773	5.607690760911086	CTCATCAATTA
chr8	71907177	71907178	chr8:71907178:G:T	chr8:71907178:G:T	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	72465722	72465723	chr8:72465723:C:T	rs7812629	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	72773184	72773185	chr8:72773185:G:A	rs114235260	G	A	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	72925206	72925207	chr8:72925207:G:A	rs12678022	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	72965381	72965382	chr8:72965382:G:A	rs78380694	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	73312822	73312823	chr8:73312823:G:C	rs13261390	G	C	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	73553678	73553679	chr8:73553679:G:C	rs117733718	G	C	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	73589455	73589456	chr8:73589456:A:T	rs73328779	A	T	A	Hoxa9_MA0594.1	2	1	-	7.66103487567689	8.45982798789041	CCTATGAATCA
chr8	73975665	73975666	chr8:73975666:A:G	rs186655121	A	G	A	Hoxa9_MA0594.1	3	1	+	7.991314647558364	5.009518220149506	GTAATGAATCA
chr8	74036491	74036492	chr8:74036492:C:G	rs73337557	C	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	74044874	74044875	chr8:74044875:C:T	rs2008565	C	T	T	Hoxa9_MA0594.1	2	1	+	7.118210716167953	5.1978796330407295	CCCATGAATCC
chr8	74299942	74299943	chr8:74299943:T:C	rs4738444	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	74813330	74813331	chr8:74813331:G:A	rs182822549	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	74816598	74816599	chr8:74816599:G:T	rs111229129	G	T	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	74978188	74978189	chr8:74978189:T:G	rs76623109	T	G	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	75081711	75081712	chr8:75081712:A:G	rs186276000	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	75575392	75575393	chr8:75575393:A:G	rs2941492	A	G	G	Hoxa9_MA0594.1	3	1	+	9.45271635848298	6.470919931074123	GCCATAAATAA
chr8	75726659	75726660	chr8:75726660:G:A	rs28580142	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	76170924	76170925	chr8:76170925:C:T	rs4087982	C	T	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	76711321	76711322	chr8:76711322:T:G	rs77491233	T	G	T	Hoxa9_MA0594.1	6	1	-	8.107577641616745	4.870156893051682	TTCATCAATCA
chr8	77026738	77026739	chr8:77026739:G:A	rs112616781	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	77188066	77188067	chr8:77188067:G:A	rs1452803	G	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	77451309	77451310	chr8:77451310:C:T	rs79852833	C	T	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	77550457	77550458	chr8:77550458:T:G	rs386981	T	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	77984911	77984912	chr8:77984912:G:A	rs880091	G	A	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	78267030	78267031	chr8:78267031:A:C	rs11988601	A	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	78807294	78807295	chr8:78807295:T:C	rs72666876	T	C	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	79076825	79076826	chr8:79076826:G:A	rs10504691	G	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	79321427	79321428	chr8:79321428:C:A	rs10957923	C	A	C	Hoxa9_MA0594.1	0	1	-	8.642730421240351	5.674728655253732	GAAATCAATCA
chr8	79356441	79356442	chr8:79356442:T:G	rs10957930	T	G	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	79692993	79692994	chr8:79692994:G:C	rs79187149	G	C	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	79699257	79699258	chr8:79699258:T:C	rs2440631	T	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	79822382	79822383	chr8:79822383:C:A	rs1355213	C	A	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	80107946	80107947	chr8:80107947:T:C	rs4740110	T	C	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	80110423	80110424	chr8:80110424:C:A	rs10957958	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	80170995	80170996	chr8:80170996:T:C	rs75062672	T	C	T	Hoxa9_MA0594.1	5	1	-	8.581246790906087	6.065102979109478	CTCATAAATTA
chr8	80682215	80682216	chr8:80682216:A:G	rs7829424	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	80839715	80839716	chr8:80839716:C:T	rs16908080	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	81014379	81014380	chr8:81014380:T:C	rs77839940	T	C	t	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	81171726	81171727	chr8:81171727:T:C	rs115439339	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	81227729	81227730	chr8:81227730:C:G	rs73265678	C	G	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	81304997	81304998	chr8:81304998:A:G	rs147631870	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	81346575	81346576	chr8:81346576:G:C	rs28493739	G	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	81346598	81346599	chr8:81346599:T:G	rs28451546	T	G	G	Hoxa9_MA0594.1	5	1	-	7.536004637837573	6.982587615172259	GCCATAACTCA
chr8	81348233	81348234	chr8:81348234:G:A	rs80240361	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	81348247	81348248	chr8:81348248:G:C	rs7003023	G	C	C	Hoxa9_MA0594.1	9	1	-	8.673564251247663	1.8752332895468167	ACCGTAAATCA
chr8	81350793	81350794	chr8:81350794:A:G	rs17582287	A	G	G	Hoxa9_MA0594.1	3	1	+	7.6543638533761875	4.672567425967328	CCCATTAATCT
chr8	81405769	81405770	chr8:81405770:G:T	rs10102668	G	T	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	81719997	81719998	chr8:81719998:T:C	rs79522539	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	82740648	82740649	chr8:82740649:G:T	rs74977565	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	82788894	82788895	chr8:82788895:G:A	rs9643765	G	A	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	82854146	82854147	chr8:82854147:C:T	rs1525331	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	83768887	83768888	chr8:83768888:G:A	chr8:83768888:G:A	G	A	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	83768887	83768888	chr8:83768888:G:T	rs78997393	G	T	G	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	84082841	84082842	chr8:84082842:A:G	rs11775916	A	G	G	Hoxa9_MA0594.1	4	1	-	8.074332694835956	1.1655779155207362	CCCATCAAACA
chr8	84184307	84184308	chr8:84184308:A:T	rs7815593	A	T	.	Hoxa9_MA0594.1	7	1	+	9.115713343191864	2.212779669488944	CCCGTAAATCA
chr8	84456550	84456551	chr8:84456551:A:G	rs1479093	A	G	A	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	84456568	84456569	chr8:84456569:T:A	rs1479094	T	A	T	Hoxa9_MA0594.1	3	1	-	8.01767889594621	1.1749422533385219	ACAATGAATCA
chr8	84488135	84488136	chr8:84488136:C:T	rs7834473	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	84648597	84648598	chr8:84648598:C:T	rs4416819	C	T	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	85019778	85019779	chr8:85019779:A:C	rs143202919	A	C	a	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	85106622	85106623	chr8:85106623:C:G	rs113697361	C	G	c	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	86036832	86036833	chr8:86036833:C:A	rs191650790	C	A	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr8	86098887	86098888	chr8:86098888:C:T	rs76572253	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	86265345	86265346	chr8:86265346:G:A	rs4425734	G	A	g	Hoxa9_MA0594.1	30	0	+	0	0	.
chr8	86678519	86678520	chr8:86678520:G:C	rs970633	G	C	c	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	86701450	86701451	chr8:86701451:G:A	rs189281836	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	87418750	87418751	chr8:87418751:G:A	rs727564	G	A	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr8	87861186	87861187	chr8:87861187:T:C	rs117211157	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	88091096	88091097	chr8:88091097:C:T	rs1382104	C	T	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	88422871	88422872	chr8:88422872:C:G	rs61109805	C	G	g	Hoxa9_MA0594.1	0	1	+	7.7140234448373395	8.13705986561569	CCTATAAATCC
chr8	88520502	88520503	chr8:88520503:A:C	rs11997591	A	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	88773635	88773636	chr8:88773636:T:C	rs1603788	T	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	88883379	88883380	chr8:88883380:G:A	rs34447991	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr8	88942361	88942362	chr8:88942362:T:A	rs7010070	T	A	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	89815823	89815824	chr8:89815824:T:C	rs40638	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	89858736	89858737	chr8:89858737:A:G	rs1017719089	A	G	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	89919478	89919479	chr8:89919479:A:G	rs80268568	A	G	A	Hoxa9_MA0594.1	3	1	+	9.894648994041017	6.912852566632158	CACATAAATCA
chr8	90165610	90165611	chr8:90165611:A:G	rs16904017	A	G	A	Hoxa9_MA0594.1	3	1	+	7.992188342502578	5.010391915093719	GGCATAAATCT
chr8	90273118	90273119	chr8:90273119:G:A	rs72675612	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	90273154	90273155	chr8:90273155:G:A	rs13282755	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	90472919	90472920	chr8:90472920:C:T	rs943597968	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	90594381	90594382	chr8:90594382:T:C	rs7016094	T	C	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	90665697	90665698	chr8:90665698:G:A	rs4332092	G	A	A	Hoxa9_MA0594.1	0	1	-	12.097509770600722	9.552544425392455	CCCATAAATCA
chr8	91128199	91128200	chr8:91128200:G:A	rs4577919	G	A	G	Hoxa9_MA0594.1	2	1	-	7.992188342502578	6.0718572593753555	GGCATAAATCT
chr8	91626905	91626906	chr8:91626906:A:G	rs10094543	A	G	A	Hoxa9_MA0594.1	5	1	+	10.763810917546127	8.247667105749517	ATCATAAATCA
chr8	92428656	92428657	chr8:92428657:C:A	rs57782769	C	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	92428689	92428690	chr8:92428690:G:C	rs58685872	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	93080687	93080688	chr8:93080688:C:T	rs279500	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	93132150	93132151	chr8:93132151:A:G	chr8:93132151:A:G	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	93393047	93393048	chr8:93393048:C:T	rs6471376	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	93803675	93803676	chr8:93803676:A:G	rs777291564	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	94024431	94024432	chr8:94024432:G:C	rs11985650	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	94103040	94103041	chr8:94103041:A:G	rs2340015	A	G	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	94115667	94115668	chr8:94115668:T:G	rs2513788	T	G	T	Hoxa9_MA0594.1	7	1	-	8.62774971750127	3.6432081639597715	CCCATAAAACA
chr8	94169714	94169715	chr8:94169715:A:T	rs112802320	A	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	94234506	94234507	chr8:94234507:C:T	rs2613209	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	94234528	94234529	chr8:94234529:T:C	rs59141736	T	C	T	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	94242374	94242375	chr8:94242375:T:A	rs76525114	T	A	T	Hoxa9_MA0594.1	7	1	-	11.050956304149539	4.1480226304466195	GCCATAAATCT
chr8	94633688	94633689	chr8:94633689:C:T	rs3133630	C	T	C	Hoxa9_MA0594.1	0	1	-	8.077400274154538	7.212214761431986	GCCATTAATCT
chr8	94679595	94679596	chr8:94679596:A:G	rs6471457	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	94951569	94951570	chr8:94951570:C:G	rs527234	C	G	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	95077479	95077480	chr8:95077480:G:A	chr8:95077480:G:A	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	95226367	95226368	chr8:95226368:C:G	rs1441395	C	G	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	95226385	95226386	chr8:95226386:T:G	rs75527404	T	G	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	95401534	95401535	chr8:95401535:T:A	rs28460086	T	A	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	95430344	95430345	chr8:95430345:A:G	rs4060044	A	G	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	95649936	95649937	chr8:95649937:G:T	rs16917940	G	T	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	95652141	95652142	chr8:95652142:A:G	chr8:95652142:A:G	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	95663803	95663804	chr8:95663804:G:A	rs6999148	G	A	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	95663807	95663808	chr8:95663808:G:A	rs3134193	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	95703768	95703769	chr8:95703769:A:C	rs150834459	A	C	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	95768731	95768732	chr8:95768732:C:T	rs3134514	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	95976045	95976046	chr8:95976046:C:A	rs11780335	C	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	96021709	96021710	chr8:96021710:A:G	rs261548	A	G	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	96365258	96365259	chr8:96365259:G:T	rs62516265	G	T	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	96372911	96372912	chr8:96372912:T:A	rs35096529	T	A	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	96407902	96407903	chr8:96407903:T:G	rs62516355	T	G	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	96718587	96718588	chr8:96718588:G:C	rs4735432	G	C	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	96909916	96909917	chr8:96909917:C:T	rs114398920	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	96928326	96928327	chr8:96928327:A:G	rs28398259	A	G	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	97130863	97130864	chr8:97130864:G:C	rs10504969	G	C	G	Hoxa9_MA0594.1	9	1	-	9.7350295955293	2.9366986338284526	ACTATAAATCA
chr8	97142212	97142213	chr8:97142213:A:G	rs17737465	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	97266635	97266636	chr8:97266636:C:G	rs6982853	C	G	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	97292953	97292954	chr8:97292954:A:G	rs74533725	A	G	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	97396129	97396130	chr8:97396130:C:T	rs4734364	C	T	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	97471193	97471194	chr8:97471194:T:C	rs7004977	T	C	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	97618818	97618819	chr8:97618819:A:G	rs55983131	A	G	A	Hoxa9_MA0594.1	0	1	+	8.74080400765128	9.60598952037383	ATCATCAATCT
chr8	97776763	97776764	chr8:97776764:G:T	rs186924336	G	T	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	97831700	97831701	chr8:97831701:G:A	rs147765464	G	A	-	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	97836480	97836481	chr8:97836481:A:G	rs17827449	A	G	a	Hoxa9_MA0594.1	3	1	+	9.895832972794834	6.914036545385976	GCCATAAATTA
chr8	97957473	97957474	chr8:97957474:G:A	rs10955137	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	97991093	97991094	chr8:97991094:G:C	rs184964070	G	C	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	98186701	98186702	chr8:98186702:A:G	rs896417	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	98203382	98203383	chr8:98203383:C:T	rs76543524	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	98331284	98331285	chr8:98331285:A:T	rs191777140	A	T	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	98598203	98598204	chr8:98598204:A:G	chr8:98598204:A:G	A	G	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	98925904	98925905	chr8:98925905:A:G	rs16897128	A	G	A	Hoxa9_MA0594.1	7	1	+	9.894648994041017	2.991715320338097	CACATAAATCA
chr8	98927307	98927308	chr8:98927308:G:A	rs117301496	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	98927321	98927322	chr8:98927322:T:C	rs79739221	T	C	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	98983597	98983598	chr8:98983598:A:G	rs79010964	A	G	A	Hoxa9_MA0594.1	8	1	-	7.440758349612847	0.5674702995129581	CCAGTCAATCA
chr8	99243874	99243875	chr8:99243875:A:G	chr8:99243875:A:G	A	G	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	99323863	99323864	chr8:99323864:A:G	rs3134309	A	G	g	Hoxa9_MA0594.1	0	1	-	8.431006454478752	10.97597179968702	TCAATAAATCA
chr8	100249834	100249835	chr8:100249835:A:G	rs17421246	A	G	A	Hoxa9_MA0594.1	2	1	+	7.959399534385545	2.5570375175509072	CCAATCAATCC
chr8	100424871	100424872	chr8:100424872:C:T	rs7357495	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	100644444	100644445	chr8:100644445:A:T	rs13256165	A	T	A	Hoxa9_MA0594.1	7	1	+	9.461778229732111	2.5588445560291917	GGCATAAATCA
chr8	100648112	100648113	chr8:100648113:G:A	rs74340703	G	A	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	100664112	100664113	chr8:100664113:C:T	rs72681431	C	T	T	Hoxa9_MA0594.1	0	1	+	8.425059106811483	5.880093761603215	CACATAAATCT
chr8	100956704	100956705	chr8:100956705:G:A	rs34145796	G	A	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	100956710	100956711	chr8:100956711:A:C	rs72667375	A	C	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	101180864	101180865	chr8:101180865:A:G	rs2197624	A	G	g	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	101245639	101245640	chr8:101245640:C:T	rs1200000439	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	101383239	101383240	chr8:101383240:G:A	rs28853591	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	101393146	101393147	chr8:101393147:A:G	rs57696142	A	G	G	Hoxa9_MA0594.1	7	1	+	7.811441225681866	0.9085075519789467	CTCATCTATCA
chr8	101393153	101393154	chr8:101393154:A:G	rs1286191888	A	G	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	101394917	101394918	chr8:101394918:A:G	rs77701710	A	G	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	101395721	101395722	chr8:101395722:G:T	rs56136206	G	T	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr8	101406981	101406982	chr8:101406982:A:G	rs10098920	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	101470017	101470018	chr8:101470018:C:T	chr8:101470018:C:T	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	101665098	101665099	chr8:101665099:G:T	rs4734572	G	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	101717174	101717175	chr8:101717175:T:C	rs7816488	T	C	T	Hoxa9_MA0594.1	8	1	+	8.00320666478695	1.12991861468706	CCCATAAATTT
chr8	101761155	101761156	chr8:101761156:C:T	rs28396908	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	101849729	101849730	chr8:101849730:C:G	rs73696518	C	G	C	Hoxa9_MA0594.1	9	1	+	8.082954538162921	1.2846235764620733	TCCATAAATCT
chr8	101953919	101953920	chr8:101953920:C:T	rs4145554	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr8	102108246	102108247	chr8:102108247:A:G	rs78751838	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	102129698	102129699	chr8:102129699:A:G	rs780109888	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	102392920	102392921	chr8:102392921:T:C	rs13267556	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	102587467	102587468	chr8:102587468:T:C	rs10505031	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	102822311	102822312	chr8:102822312:C:T	rs2513915	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	103154181	103154182	chr8:103154182:C:T	rs72671371	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr8	103270916	103270917	chr8:103270917:T:C	rs28844079	T	C	T	Hoxa9_MA0594.1	5	1	-	7.727146254177281	5.211002442380671	ACCCTAAATCA
chr8	103347400	103347401	chr8:103347401:G:A	rs1464550	G	A	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	103795962	103795963	chr8:103795963:C:T	rs79263410	C	T	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	103874206	103874207	chr8:103874207:A:G	rs4446700	A	G	G	Hoxa9_MA0594.1	7	1	+	9.064232820513286	2.1612991468103657	ACAATAAATCT
chr8	104255988	104255989	chr8:104255989:T:C	rs79600049	T	C	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr8	104339769	104339770	chr8:104339770:A:C	rs2458415	A	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	104363636	104363637	chr8:104363637:G:A	rs2334119	G	A	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	104463419	104463420	chr8:104463420:T:C	rs13282051	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	104772999	104773000	chr8:104773000:G:A	rs7840847	G	A	G	Hoxa9_MA0594.1	3	1	+	7.440758349612847	10.422554777021706	CCAGTCAATCA
chr8	104975319	104975320	chr8:104975320:A:G	rs7813110	A	G	A	Hoxa9_MA0594.1	7	1	+	8.561166597372587	1.658232923669666	GTCATAAATAA
chr8	104975338	104975339	chr8:104975339:C:T	chr8:104975339:C:T	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	105090660	105090661	chr8:105090661:G:T	rs285822	G	T	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	105222413	105222414	chr8:105222414:G:A	rs6468988	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	105222436	105222437	chr8:105222437:A:T	rs151215976	A	T	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr8	105320200	105320201	chr8:105320201:C:A	rs117573636	C	A	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	105447789	105447790	chr8:105447790:C:G	rs78570982	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	105571169	105571170	chr8:105571170:G:C	rs4734880	G	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	106000686	106000687	chr8:106000687:C:T	rs12546875	C	T	T	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	106046055	106046056	chr8:106046056:A:G	rs59493472	A	G	A	Hoxa9_MA0594.1	7	1	+	10.763810917546127	3.8608772438432064	ATCATAAATCA
chr8	106203245	106203246	chr8:106203246:T:C	rs13278474	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	106277563	106277564	chr8:106277564:C:T	rs114022941	C	T	C	Hoxa9_MA0594.1	5	1	-	9.112852618472068	11.628996430268678	GTCATGAATCA
chr8	106277571	106277572	chr8:106277572:T:C	rs1566786	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	106316387	106316388	chr8:106316388:G:T	rs13280179	G	T	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr8	106316388	106316389	chr8:106316389:A:C	rs13279487	A	C	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	106778825	106778826	chr8:106778826:A:C	chr8:106778826:A:C	A	C	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	106799278	106799279	chr8:106799279:T:G	rs186192793	T	G	t	Hoxa9_MA0594.1	1	1	+	8.66099466428206	6.493776463745492	TTCATAAATCA
chr8	106895768	106895769	chr8:106895769:G:A	rs59055708	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	107279076	107279077	chr8:107279077:G:A	rs951622482	G	A	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	107380318	107380319	chr8:107380319:A:T	rs1672143	A	T	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	108242802	108242803	chr8:108242803:C:A	rs681963	C	A	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	108347275	108347276	chr8:108347276:C:T	rs35068139	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	109435627	109435628	chr8:109435628:G:A	rs114714549	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	109621045	109621046	chr8:109621046:A:T	rs2844250	A	T	A	Hoxa9_MA0594.1	7	1	+	9.552544425392455	2.649610751689534	TCCATAAATCA
chr8	110093074	110093075	chr8:110093075:T:A	rs62526224	T	A	T	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	110509677	110509678	chr8:110509678:A:G	rs71526761	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	110611904	110611905	chr8:110611905:G:A	rs1494235	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	111070855	111070856	chr8:111070856:T:C	rs74895881	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	111101154	111101155	chr8:111101155:A:T	rs10106508	A	T	A	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	111519161	111519162	chr8:111519162:T:C	rs12682170	T	C	T	Hoxa9_MA0594.1	4	1	+	7.6696269796303795	0.760872200315158	ACCATGAATCT
chr8	111758239	111758240	chr8:111758240:G:A	rs35052391	G	A	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	111832461	111832462	chr8:111832462:C:A	rs182067910	C	A	c	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	112068395	112068396	chr8:112068396:G:C	rs10955611	G	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	112522414	112522415	chr8:112522415:C:G	rs17885888	C	G	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	112806993	112806994	chr8:112806994:T:G	rs12334432	T	G	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	113006153	113006154	chr8:113006154:T:C	rs7004426	T	C	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	113133445	113133446	chr8:113133446:T:C	rs7818176	T	C	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	114880824	114880825	chr8:114880825:C:T	rs7816550	C	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	115418632	115418633	chr8:115418633:C:A	rs1180628	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	115660519	115660520	chr8:115660520:G:T	rs179444	G	T	T	Hoxa9_MA0594.1	9	1	-	10.763810917546127	7.695981084650036	ATCATAAATCA
chr8	115696375	115696376	chr8:115696376:G:T	rs17729371	G	T	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	116037863	116037864	chr8:116037864:C:T	rs2223063	C	T	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	116047530	116047531	chr8:116047531:A:G	rs6991315	A	G	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr8	116493031	116493032	chr8:116493032:A:G	rs13252528	A	G	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	116522564	116522565	chr8:116522565:T:C	rs2068717	T	C	T	Hoxa9_MA0594.1	7	1	-	9.894648994041017	2.991715320338097	CACATAAATCA
chr8	117039064	117039065	chr8:117039065:T:A	rs905904	T	A	A	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	117063396	117063397	chr8:117063397:T:C	rs116113707	T	C	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	117240204	117240205	chr8:117240205:G:T	rs1793732	G	T	T	Hoxa9_MA0594.1	2	1	-	8.647200002859819	7.525662031946116	GTCGTAAATCA
chr8	117252979	117252980	chr8:117252980:C:T	rs2705248	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	117316333	117316334	chr8:117316334:G:A	rs1793694	G	A	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	117398947	117398948	chr8:117398948:A:G	rs951769907	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	117614039	117614040	chr8:117614040:G:A	rs10100465	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	118090841	118090842	chr8:118090842:T:C	rs2468151	T	C	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	118116183	118116184	chr8:118116184:T:A	rs148506839	T	A	T	Hoxa9_MA0594.1	8	1	+	9.506381912457487	6.036621859358035	CCAATAAATCT
chr8	118201924	118201925	chr8:118201925:C:T	rs11562743	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	118209606	118209607	chr8:118209607:T:G	rs1159092263	T	G	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	118510594	118510595	chr8:118510595:C:T	rs6988490	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	118622515	118622516	chr8:118622516:T:C	chr8:118622516:T:C	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr8	118646245	118646246	chr8:118646246:G:T	rs181977971	G	T	G	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	118676328	118676329	chr8:118676329:A:G	rs59139982	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	118802907	118802908	chr8:118802908:A:G	rs11781292	A	G	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	118802919	118802920	chr8:118802920:T:C	rs3103976	T	C	T	Hoxa9_MA0594.1	10	1	-	10.317685414819367	3.6809124290665984	GACATAAATCA
chr8	118822827	118822828	chr8:118822828:G:T	rs540193673	G	T	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	118900872	118900873	chr8:118900873:G:T	rs4477060	G	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	118987291	118987292	chr8:118987292:A:G	rs1825512	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	119205327	119205328	chr8:119205328:T:C	rs74513007	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	119205340	119205341	chr8:119205341:G:T	rs75888063	G	T	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr8	119362293	119362294	chr8:119362294:C:T	rs140243815	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr8	119588724	119588725	chr8:119588725:G:A	rs16892827	G	A	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr8	119689612	119689613	chr8:119689613:A:G	rs6986529	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr8	120080616	120080617	chr8:120080617:T:C	rs2292946	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	120242898	120242899	chr8:120242899:C:T	rs115059100	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	120266450	120266451	chr8:120266451:G:C	rs7827901	G	C	C	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr8	120266710	120266711	chr8:120266711:A:G	rs16893791	A	G	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	120559025	120559026	chr8:120559026:A:G	rs4297067	A	G	A	Hoxa9_MA0594.1	5	1	-	8.655440400273676	11.075579407603364	GTCATTAATCA
chr8	120730041	120730042	chr8:120730042:G:C	rs4871106	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	120742451	120742452	chr8:120742452:T:C	rs73323122	T	C	C	Hoxa9_MA0594.1	10	1	-	9.196147443905666	2.559374458152897	GAAATAAATCA
chr8	120750413	120750414	chr8:120750414:T:C	rs11996216	T	C	C	Hoxa9_MA0594.1	3	1	-	8.773111023127315	5.791314595718456	CAAATAAATCA
chr8	120762182	120762183	chr8:120762183:A:G	rs10955987	A	G	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	120868978	120868979	chr8:120868979:T:C	rs79575029	T	C	T	Hoxa9_MA0594.1	20	0	-	0	0	.
chr8	120961727	120961728	chr8:120961728:C:T	rs16894464	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	120968451	120968452	chr8:120968452:G:T	rs73707472	G	T	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr8	121023749	121023750	chr8:121023750:A:G	rs1714646	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	121363390	121363391	chr8:121363391:G:A	rs117357109	G	A	G	Hoxa9_MA0594.1	6	1	-	8.16158747190031	8.557906459322226	GCAATACATCA
chr8	121375511	121375512	chr8:121375512:T:G	rs34247899	T	G	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	121404280	121404281	chr8:121404281:T:C	rs6984809	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	121474306	121474307	chr8:121474307:G:T	rs7001638	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr8	121721961	121721962	chr8:121721962:G:A	rs6999197	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	122318861	122318862	chr8:122318862:G:A	rs113463826	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	122386428	122386429	chr8:122386429:G:A	rs117390513	G	A	G	Hoxa9_MA0594.1	0	1	-	7.415122238259951	4.870156893051682	CTCATCCATCA
chr8	122529443	122529444	chr8:122529444:T:C	rs7834081	T	C	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	122617433	122617434	chr8:122617434:T:G	rs113712962	T	G	T	Hoxa9_MA0594.1	3	1	-	8.702990986792262	4.774776562313021	CCCATCTATCA
chr8	122884334	122884335	chr8:122884335:C:T	rs4871322	C	T	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	123155009	123155010	chr8:123155010:T:C	rs115582990	T	C	T	Hoxa9_MA0594.1	7	1	-	9.15524832447614	2.252314650773221	GTTATCAATCA
chr8	123155026	123155027	chr8:123155027:T:C	rs7008474	T	C	C	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr8	123476933	123476934	chr8:123476934:G:A	rs112153611	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	123523051	123523052	chr8:123523052:A:C	rs16898508	A	C	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	123829505	123829506	chr8:123829506:G:C	rs149960015	G	C	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr8	123868965	123868966	chr8:123868966:A:G	rs78136214	A	G	A	Hoxa9_MA0594.1	7	1	+	8.234477646460217	1.3315439727572973	GTCATCTATCA
chr8	124247521	124247522	chr8:124247522:C:T	rs12335223	C	T	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	124272238	124272239	chr8:124272239:C:T	rs116901885	C	T	c	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	124283546	124283547	chr8:124283547:C:T	rs10089507	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr8	124295482	124295483	chr8:124295483:A:G	rs1365168835	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	124352125	124352126	chr8:124352126:C:T	rs4355753	C	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	124574394	124574395	chr8:124574395:A:G	rs4286935	A	G	A	Hoxa9_MA0594.1	4	1	-	8.702990986792262	1.7942362074770417	CCCATCTATCA
chr8	124649081	124649082	chr8:124649082:C:T	rs4871529	C	T	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	124757934	124757935	chr8:124757935:G:A	rs7013867	G	A	A	Hoxa9_MA0594.1	0	1	-	9.03874180895376	6.493776463745492	CGCATAAATCA
chr8	124828988	124828989	chr8:124828989:G:A	rs4871556	G	A	G	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr8	124842829	124842830	chr8:124842830:G:C	rs191942950	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	124919318	124919319	chr8:124919319:C:T	rs6989608	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	124941196	124941197	chr8:124941197:T:C	rs7004579	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	124941231	124941232	chr8:124941232:G:A	rs6984664	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	125091030	125091031	chr8:125091031:C:A	rs142254336	C	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	125314214	125314215	chr8:125314215:A:G	rs142891049	A	G	A	Hoxa9_MA0594.1	5	1	+	12.097509770600722	9.581365958804113	CCCATAAATCA
chr8	125432812	125432813	chr8:125432813:G:A	rs72647336	G	A	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	125518055	125518056	chr8:125518056:T:G	rs1075553	T	G	T	Hoxa9_MA0594.1	5	1	-	9.165841187632518	8.612424164967203	GTCATAAATCC
chr8	125656042	125656043	chr8:125656043:C:T	rs116017639	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr8	125769562	125769563	chr8:125769563:C:T	rs17425525	C	T	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	125831403	125831404	chr8:125831404:T:A	rs61003425	T	A	A	Hoxa9_MA0594.1	2	1	+	8.707588800243967	9.506381912457487	CCTATAAATCT
chr8	126099059	126099060	chr8:126099060:G:A	rs72712723	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr8	126295911	126295912	chr8:126295912:C:A	rs7834246	C	A	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr8	126384061	126384062	chr8:126384062:C:A	rs16901353	C	A	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	126473186	126473187	chr8:126473187:A:C	rs9693139	A	C	A	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	126668607	126668608	chr8:126668608:A:G	rs7831824	A	G	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr8	126668668	126668669	chr8:126668669:A:C	rs7831850	A	C	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	126787163	126787164	chr8:126787164:G:T	rs34866192	G	T	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	126870854	126870855	chr8:126870855:T:A	rs10505494	T	A	T	Hoxa9_MA0594.1	6	1	-	8.642730421240351	5.8016286600972045	GAAATCAATCA
chr8	126870868	126870869	chr8:126870869:C:T	rs10505493	C	T	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	127505514	127505515	chr8:127505515:A:C	rs4242383	A	C	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	127586313	127586314	chr8:127586314:T:C	rs74534346	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	127763912	127763913	chr8:127763913:T:A	rs150718493	T	A	T	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	127875903	127875904	chr8:127875904:A:G	rs16902450	A	G	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	128240683	128240684	chr8:128240684:T:A	rs76625702	T	A	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr8	128297236	128297237	chr8:128297237:A:T	rs16902791	A	T	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	128317182	128317183	chr8:128317183:C:T	rs116614422	C	T	c	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	128323120	128323121	chr8:128323121:G:A	rs76280666	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr8	128385797	128385798	chr8:128385798:G:A	rs111452705	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr8	128543285	128543286	chr8:128543286:T:C	rs2011527	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	128598889	128598890	chr8:128598890:T:A	rs11780050	T	A	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr8	128863013	128863014	chr8:128863014:A:G	rs2056314	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	128863023	128863024	chr8:128863024:A:G	rs2056313	A	G	A	Hoxa9_MA0594.1	3	1	+	9.080937505299248	6.099141077890389	CCCATCAATCC
chr8	128973350	128973351	chr8:128973351:G:A	rs79256608	G	A	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	128973388	128973389	chr8:128973389:C:A	chr8:128973389:C:A	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	128993911	128993912	chr8:128993912:T:C	rs1441991	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	129035047	129035048	chr8:129035048:T:G	rs9297782	T	G	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr8	129148587	129148588	chr8:129148588:T:G	rs10112477	T	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	129196744	129196745	chr8:129196745:T:C	rs13269074	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr8	129696329	129696330	chr8:129696330:C:A	rs28496233	C	A	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	129816653	129816654	chr8:129816654:C:T	rs2624802	C	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr8	129882546	129882547	chr8:129882547:A:G	rs76857096	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr8	130407741	130407742	chr8:130407742:G:A	rs59012190	G	A	g	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	130444822	130444823	chr8:130444823:T:A	rs72726234	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr8	130527410	130527411	chr8:130527411:A:C	rs59814011	A	C	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr8	130584368	130584369	chr8:130584369:A:G	rs10086936	A	G	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	130695055	130695056	chr8:130695056:A:G	rs550534209	A	G	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	131350823	131350824	chr8:131350824:C:T	rs55861291	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	131444126	131444127	chr8:131444127:C:T	rs72720421	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr8	131727530	131727531	chr8:131727531:T:G	rs12541606	T	G	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	131947287	131947288	chr8:131947288:G:A	rs759502361	G	A	G	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr8	131947290	131947291	chr8:131947291:C:T	rs10108409	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	132046786	132046787	chr8:132046787:A:T	rs10216899	A	T	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	132055348	132055349	chr8:132055349:T:C	rs16904582	T	C	T	Hoxa9_MA0594.1	3	1	-	7.7868232361530945	4.805026808744236	GGAATCAATCA
chr8	132091650	132091651	chr8:132091651:A:G	rs13258119	A	G	a	Hoxa9_MA0594.1	4	1	-	9.112852618472068	2.204097839156847	GTCATGAATCA
chr8	132104352	132104353	chr8:132104353:A:G	rs6999276	A	G	a	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	132107591	132107592	chr8:132107592:G:A	rs59816126	G	A	g	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	132468081	132468082	chr8:132468082:C:T	rs6997998	C	T	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr8	132516237	132516238	chr8:132516238:C:T	rs78112339	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr8	132675867	132675868	chr8:132675868:T:C	chr8:132675868:T:C	T	C	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr8	132684305	132684306	chr8:132684306:T:C	rs7827081	T	C	C	Hoxa9_MA0594.1	5	1	-	7.786818122228043	5.270674310431433	CCCATATATCT
chr8	132953690	132953691	chr8:132953691:T:C	rs7015805	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr8	133015731	133015732	chr8:133015732:A:G	rs6471109	A	G	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr8	133046223	133046224	chr8:133046224:G:C	rs78804548	G	C	G	Hoxa9_MA0594.1	5	1	-	9.08885592396711	7.126129134835814	ATAATCAATCA
chr8	133257218	133257219	chr8:133257219:A:G	rs78080721	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	133302159	133302160	chr8:133302160:G:T	rs16904885	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr8	133335268	133335269	chr8:133335269:A:G	rs6982426	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	133353800	133353801	chr8:133353801:T:C	rs73708751	T	C	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr8	133362929	133362930	chr8:133362930:C:T	rs116835984	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	133415955	133415956	chr8:133415956:G:C	rs17645686	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr8	133415999	133416000	chr8:133416000:C:T	rs2736862	C	T	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr8	133433414	133433415	chr8:133433415:T:G	rs2736857	T	G	G	Hoxa9_MA0594.1	8	1	+	8.557906459322226	3.6030105293837567	GCAATATATCA
chr8	133580164	133580165	chr8:133580165:C:G	rs62518386	C	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr8	133580180	133580181	chr8:133580181:T:C	rs6996079	T	C	C	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	134199134	134199135	chr8:134199135:G:A	rs11996214	G	A	A	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	134199138	134199139	chr8:134199139:G:A	rs11996215	G	A	A	Hoxa9_MA0594.1	9	1	-	10.317685414819367	7.692972196235129	GACATAAATCA
chr8	134507720	134507721	chr8:134507721:C:T	rs16905157	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr8	134597293	134597294	chr8:134597294:G:A	rs879104	G	A	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	134735050	134735051	chr8:134735051:T:A	rs117824771	T	A	t	Hoxa9_MA0594.1	7	1	-	10.084422038576625	3.1814883648737045	CTAATAAATCA
chr8	134795373	134795374	chr8:134795374:A:C	rs80343282	A	C	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	134834293	134834294	chr8:134834294:T:G	rs189216530	T	G	T	Hoxa9_MA0594.1	16	0	+	0	0	.
chr8	134834297	134834298	chr8:134834298:C:A	rs80147395	C	A	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	134883733	134883734	chr8:134883734:G:T	rs7000629	G	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr8	135042003	135042004	chr8:135042004:T:C	rs9324520	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr8	135143904	135143905	chr8:135143905:A:C	rs72726699	A	C	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr8	135632478	135632479	chr8:135632479:C:T	rs7014547	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr8	135646951	135646952	chr8:135646952:C:T	rs28621864	C	T	C	Hoxa9_MA0594.1	5	1	-	7.541247136946303	10.057390948742912	GCCATGAATCC
chr8	135689883	135689884	chr8:135689884:G:A	rs10098297	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	135727035	135727036	chr8:135727036:G:T	rs7018269	G	T	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr8	135942465	135942466	chr8:135942466:T:C	rs1375256	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr8	136303550	136303551	chr8:136303551:C:T	rs869061	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr8	136723369	136723370	chr8:136723370:G:A	rs17647473	G	A	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	137010028	137010029	chr8:137010029:A:G	rs7357354	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	137202651	137202652	chr8:137202652:C:G	rs73712227	C	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	137398770	137398771	chr8:137398771:C:T	rs4607657	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr8	137398784	137398785	chr8:137398785:T:C	rs7816605	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr8	138345195	138345196	chr8:138345196:A:G	rs11166814	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr8	138633345	138633346	chr8:138633346:T:A	rs146292799	T	A	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr8	138806659	138806660	chr8:138806660:C:A	rs11779129	C	A	A	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	139000221	139000222	chr8:139000222:C:T	rs140429085	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr8	139264242	139264243	chr8:139264243:C:T	rs4400357	C	T	T	Hoxa9_MA0594.1	23	0	-	0	0	.
chr8	139268336	139268337	chr8:139268337:T:G	rs62520253	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	139339255	139339256	chr8:139339256:A:G	rs16910485	A	G	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr8	139386751	139386752	chr8:139386752:T:G	rs12550306	T	G	G	Hoxa9_MA0594.1	4	1	+	9.642272946632424	2.7335181673172038	ATAATAAATCA
chr8	139465066	139465067	chr8:139465067:A:T	rs10088809	A	T	A	Hoxa9_MA0594.1	3	1	+	9.632353768761673	2.789617126153986	ACCATCAATCT
chr8	139602175	139602176	chr8:139602176:C:T	rs7012654	C	T	C	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr8	139631202	139631203	chr8:139631203:T:C	rs73724467	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr8	139846249	139846250	chr8:139846250:C:T	rs6989457	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	139871918	139871919	chr8:139871919:G:A	rs57910830	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr8	139931892	139931893	chr8:139931893:C:T	rs2233232	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	139984814	139984815	chr8:139984815:C:A	rs959700661	C	A	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr8	139991409	139991410	chr8:139991410:T:C	rs186382539	T	C	T	Hoxa9_MA0594.1	2	1	-	7.738551051121958	2.3361890342873206	CCAATACATCA
chr8	140091374	140091375	chr8:140091375:T:C	rs117055258	T	C	T	Hoxa9_MA0594.1	7	1	-	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr8	140142869	140142870	chr8:140142870:C:G	rs4379425	C	G	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr8	140143987	140143988	chr8:140143988:A:G	rs79810242	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr8	140274400	140274401	chr8:140274401:T:C	rs4637801	T	C	C	Hoxa9_MA0594.1	4	1	+	9.894648994041017	2.9858942147257963	CACATAAATCA
chr8	140507998	140507999	chr8:140507999:A:C	rs907005125	A	C	A	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr8	140507999	140508000	chr8:140508000:C:T	rs1057085	C	T	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	140581585	140581586	chr8:140581586:T:A	rs72694455	T	A	T	Hoxa9_MA0594.1	8	1	+	8.169295346121482	4.69953529302203	CCCCTAAATCA
chr8	140591726	140591727	chr8:140591727:G:A	rs183932344	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr8	141431949	141431950	chr8:141431950:T:G	rs10086164	T	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr8	141431979	141431980	chr8:141431980:G:A	rs13273083	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr8	141493438	141493439	chr8:141493439:A:G	rs531875752	A	G	A	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr8	141563362	141563363	chr8:141563363:A:T	rs4907413	A	T	A	Hoxa9_MA0594.1	4	1	-	8.899082879431504	1.9903281001162816	AACATCAATCA
chr8	141563373	141563374	chr8:141563374:A:C	rs13281277	A	C	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr8	141679519	141679520	chr8:141679520:T:G	rs74896568	T	G	T	Hoxa9_MA0594.1	1	1	+	8.742804766854166	6.5755865663176	CTCATAAATCC
chr8	141735010	141735011	chr8:141735011:G:A	rs12545322	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr8	141761288	141761289	chr8:141761289:A:G	rs9720892	A	G	G	Hoxa9_MA0594.1	3	1	+	10.422554777021706	7.440758349612847	CCAATCAATCA
chr8	141881439	141881440	chr8:141881440:C:G	rs773232964	C	G	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr8	141906192	141906193	chr8:141906193:T:C	rs75210113	T	C	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	142245459	142245460	chr8:142245460:A:G	rs4976983	A	G	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr8	142285373	142285374	chr8:142285374:G:A	rs905815419	G	A	-	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr8	142288006	142288007	chr8:142288007:C:T	rs4976992	C	T	N	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	142288018	142288019	chr8:142288019:C:A	rs4976993	C	A	N	Hoxa9_MA0594.1	2	1	+	10.074502860705875	8.952964889792172	CCCATCAATCT
chr8	142661000	142661001	chr8:142661001:T:C	rs4736366	T	C	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr8	142661022	142661023	chr8:142661023:T:C	rs12675227	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr8	142673769	142673770	chr8:142673770:G:A	rs73714660	G	A	G	Hoxa9_MA0594.1	0	1	+	8.729708420148697	7.864522907426146	GCCATCCATCA
chr8	142880028	142880029	chr8:142880029:T:C	rs61751131	T	C	t	Hoxa9_MA0594.1	7	1	-	6.837082112140813	-0.06585156156210742	CCCATCCATCT
chr8	143048418	143048419	chr8:143048419:G:A	chr8:143048419:G:A	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr8	143056365	143056366	chr8:143056366:A:G	rs4977120	A	G	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr8	143107999	143108000	chr8:143108000:T:C	rs10102811	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr8	143148277	143148278	chr8:143148278:G:A	rs7459807	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr8	143174603	143174604	chr8:143174604:G:T	rs10448085	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr8	143179768	143179769	chr8:143179769:G:A	rs75955964	G	A	-	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr8	143240435	143240436	chr8:143240436:T:C	rs6558337	T	C	C	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr8	143433396	143433397	chr8:143433397:G:T	rs55994096	G	T	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr8	143489670	143489671	chr8:143489671:C:G	rs4874140	C	G	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr8	143511067	143511068	chr8:143511068:A:G	rs7824592	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr8	143516247	143516248	chr8:143516248:A:C	rs115061386	A	C	A	Hoxa9_MA0594.1	10	1	+	10.084422038576625	7.621266795940464	CTAATAAATCA
chr8	143608715	143608716	chr8:143608716:A:C	rs10097337	A	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr8	143994427	143994428	chr8:143994428:A:G	rs138813977	A	G	A	Hoxa9_MA0594.1	7	1	+	8.899082879431504	1.996149205728583	AACATCAATCA
chr8	144463866	144463867	chr8:144463867:C:T	rs1046830	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr8	144550485	144550486	chr8:144550486:T:C	rs116539001	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr8	145062679	145062680	chr8:145062680:T:C	rs7008265	T	C	.	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	506479	506480	chr9:506480:C:T	rs550718420	C	T	C	Hoxa9_MA0594.1	2	1	+	9.552544425392455	7.632213342265231	TCCATAAATCA
chr9	577761	577762	chr9:577762:G:C	rs78755325	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	694452	694453	chr9:694453:C:T	rs912162	C	T	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	799309	799310	chr9:799310:A:G	rs62529721	A	G	A	Hoxa9_MA0594.1	3	1	+	8.557906459322226	5.576110031913366	GCAATATATCA
chr9	799313	799314	chr9:799314:A:T	rs62529722	A	T	T	Hoxa9_MA0594.1	7	1	+	8.557906459322226	1.654972785619305	GCAATATATCA
chr9	900000	900001	chr9:900001:G:C	chr9:900001:G:C	G	C	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	1048401	1048402	chr9:1048402:G:A	rs2279985	G	A	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr9	1052676	1052677	chr9:1052677:T:C	rs7867675	T	C	T	Hoxa9_MA0594.1	1	1	+	8.612424164967203	9.503973926077597	GTCATCAATCC
chr9	1052685	1052686	chr9:1052686:C:A	rs7849591	C	A	C	Hoxa9_MA0594.1	10	1	+	8.612424164967203	11.075579407603364	GTCATCAATCC
chr9	1096339	1096340	chr9:1096340:A:G	rs12338842	A	G	a	Hoxa9_MA0594.1	1	1	-	9.112852618472068	10.004402379582464	GTCATGAATCA
chr9	1098900	1098901	chr9:1098901:A:C	rs75857685	A	C	a	Hoxa9_MA0594.1	4	1	-	7.529537515497607	0.6207827361823852	TCCATCAATCT
chr9	1102942	1102943	chr9:1102943:T:C	rs10756149	T	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	1121084	1121085	chr9:1121085:C:T	rs10959548	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	1124118	1124119	chr9:1124119:A:G	rs150118836	A	G	A	Hoxa9_MA0594.1	1	1	-	9.708665347141455	10.60021510825185	GTTATAAATCA
chr9	1129561	1129562	chr9:1129562:G:C	rs10959617	G	C	G	Hoxa9_MA0594.1	11	0	+	0	0	.
chr9	1201864	1201865	chr9:1201865:C:T	rs7025972	C	T	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	1320871	1320872	chr9:1320872:A:G	rs11790506	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	1383918	1383919	chr9:1383919:A:G	rs998573	A	G	A	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr9	1598301	1598302	chr9:1598302:A:T	rs10810464	A	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	1666692	1666693	chr9:1666693:A:G	rs2485175	A	G	A	Hoxa9_MA0594.1	0	1	+	9.642272946632424	10.507458459354975	ATAATAAATCA
chr9	1871923	1871924	chr9:1871924:C:G	rs143446422	C	G	C	Hoxa9_MA0594.1	19	0	-	0	0	.
chr9	2153464	2153465	chr9:2153465:A:G	rs4740662	A	G	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr9	2180535	2180536	chr9:2180536:T:C	rs10757235	T	C	C	Hoxa9_MA0594.1	10	1	-	10.763810917546127	4.1270379317933585	ATCATAAATCA
chr9	2209975	2209976	chr9:2209976:A:T	rs10125847	A	T	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	2210009	2210010	chr9:2210010:T:C	rs10965210	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	2292893	2292894	chr9:2292894:G:A	rs145875771	G	A	G	Hoxa9_MA0594.1	0	1	-	10.97597179968702	8.431006454478752	CCAATAAATCA
chr9	2451396	2451397	chr9:2451397:A:C	rs1331456	A	C	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	2493750	2493751	chr9:2493751:T:G	rs12216886	T	G	T	Hoxa9_MA0594.1	6	1	-	10.185770791426988	6.948350042861927	ACCATAAATCT
chr9	2636160	2636161	chr9:2636161:C:T	rs7035616	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr9	2693228	2693229	chr9:2693229:C:T	rs77210048	C	T	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	3007330	3007331	chr9:3007331:C:T	rs12342511	C	T	T	Hoxa9_MA0594.1	29	0	+	0	0	.
chr9	3040925	3040926	chr9:3040926:C:A	rs72696751	C	A	T	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	3187964	3187965	chr9:3187965:T:A	rs716252	T	A	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	3246490	3246491	chr9:3246491:A:C	rs535614	A	C	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	3955128	3955129	chr9:3955129:G:A	rs141648678	G	A	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	3961491	3961492	chr9:3961492:G:A	rs635171	G	A	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	4071192	4071193	chr9:4071193:T:C	rs10125963	T	C	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	4071229	4071230	chr9:4071230:C:A	rs78480614	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	4084842	4084843	chr9:4084843:A:G	rs10283708	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	4085946	4085947	chr9:4085947:C:T	rs7020642	C	T	T	Hoxa9_MA0594.1	18	0	+	0	0	.
chr9	4137978	4137979	chr9:4137979:A:G	rs138030514	A	G	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr9	4317265	4317266	chr9:4317266:C:G	rs7034974	C	G	C	Hoxa9_MA0594.1	5	1	+	7.747238652244652	5.784511863113356	ATCATCAATCC
chr9	4375686	4375687	chr9:4375687:C:T	rs73388187	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	4426630	4426631	chr9:4426631:C:A	rs10974531	C	A	C	Hoxa9_MA0594.1	2	1	+	7.864522907426146	6.742984936512444	ACCATCCATCA
chr9	4510508	4510509	chr9:4510509:A:G	rs35815316	A	G	A	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr9	4514962	4514963	chr9:4514963:G:C	rs4008488	G	C	G	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	4563315	4563316	chr9:4563316:A:G	rs6476878	A	G	G	Hoxa9_MA0594.1	0	1	+	8.18560062555707	9.050786138279621	ACCATAAAACA
chr9	4594722	4594723	chr9:4594723:C:T	rs181873746	C	T	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	4792555	4792556	chr9:4792556:C:T	rs180814296	C	T	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	4793797	4793798	chr9:4793798:G:T	rs296847	G	T	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	5292256	5292257	chr9:5292257:T:C	rs1407374	T	C	C	Hoxa9_MA0594.1	4	1	+	9.030647460072283	2.121892680757063	ACCATAAATTA
chr9	5392270	5392271	chr9:5392271:G:A	rs3739638	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	5440427	5440428	chr9:5440428:A:C	rs62559127	A	C	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	5447226	5447227	chr9:5447227:A:G	rs34477738	A	G	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr9	5489056	5489057	chr9:5489057:C:G	rs76064315	C	G	G	Hoxa9_MA0594.1	2	1	+	8.41793993009146	1.8940399423431213	ACCATACATCA
chr9	5632720	5632721	chr9:5632721:A:G	rs4740823	A	G	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	5971976	5971977	chr9:5971977:A:G	rs10815327	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	6099530	6099531	chr9:6099531:T:C	rs437389	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	6153707	6153708	chr9:6153708:C:A	rs60831665	C	A	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	6236976	6236977	chr9:6236977:A:T	rs10975507	A	T	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	6332900	6332901	chr9:6332901:A:C	rs721352	A	C	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	6696458	6696459	chr9:6696459:T:C	rs820512	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr9	6955599	6955600	chr9:6955600:A:C	chr9:6955600:A:C	A	C	A	Hoxa9_MA0594.1	19	0	-	0	0	.
chr9	7163685	7163686	chr9:7163686:G:A	rs7046542	G	A	A	Hoxa9_MA0594.1	1	1	+	7.569151921724227	8.425059106811483	CGCATAAATCT
chr9	7208827	7208828	chr9:7208828:G:C	rs10815550	G	C	G	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	7228806	7228807	chr9:7228807:C:G	rs16925619	C	G	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	7268784	7268785	chr9:7268785:C:T	rs7864566	C	T	C	Hoxa9_MA0594.1	0	1	-	7.7868232361530945	6.9216377234305435	GGAATCAATCA
chr9	7368226	7368227	chr9:7368227:T:C	rs138032033	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	7370678	7370679	chr9:7370679:C:T	rs7849548	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	7533674	7533675	chr9:7533675:T:A	rs6477212	T	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	7533676	7533677	chr9:7533677:C:G	rs6477213	C	G	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	7577574	7577575	chr9:7577575:T:G	rs72695146	T	G	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	7658013	7658014	chr9:7658014:C:A	rs151145378	C	A	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr9	7808972	7808973	chr9:7808973:G:A	rs1412775	G	A	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	7960586	7960587	chr9:7960587:G:A	rs60520833	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	7974207	7974208	chr9:7974208:C:T	rs7029961	C	T	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr9	7981072	7981073	chr9:7981073:T:C	rs145208196	T	C	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	8115875	8115876	chr9:8115876:G:A	rs10815762	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	8176621	8176622	chr9:8176622:T:C	rs10733543	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	8264660	8264661	chr9:8264661:C:T	rs10976895	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	8280927	8280928	chr9:8280928:A:G	rs12339066	A	G	A	Hoxa9_MA0594.1	0	1	+	9.642272946632424	10.507458459354975	ATAATAAATCA
chr9	8280949	8280950	chr9:8280950:A:C	rs1392508	A	C	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr9	8401708	8401709	chr9:8401709:T:C	rs10977049	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	8401710	8401711	chr9:8401711:C:T	rs10977050	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	8570778	8570779	chr9:8570779:T:C	rs10977209	T	C	T	Hoxa9_MA0594.1	3	1	-	7.185134028456644	4.203337601047785	CCAATCCATCA
chr9	8570787	8570788	chr9:8570788:C:G	rs58948334	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	8609401	8609402	chr9:8609402:T:A	rs62530711	T	A	A	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	8649428	8649429	chr9:8649429:C:T	rs7041298	C	T	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	8851129	8851130	chr9:8851130:T:C	rs185992145	T	C	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	8856907	8856908	chr9:8856908:C:T	rs751372	C	T	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	8937477	8937478	chr9:8937478:C:T	rs10511514	C	T	C	Hoxa9_MA0594.1	2	1	+	11.628996430268678	9.708665347141455	GTCATAAATCA
chr9	9261736	9261737	chr9:9261737:G:A	rs4626664	G	A	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr9	9400176	9400177	chr9:9400177:A:C	rs1412722	A	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	9649178	9649179	chr9:9649179:G:C	rs12351554	G	C	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	9662427	9662428	chr9:9662428:T:A	rs10759084	T	A	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	9730365	9730366	chr9:9730366:C:T	rs1934268	C	T	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	10251589	10251590	chr9:10251590:C:G	rs140560214	C	G	c	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	10251602	10251603	chr9:10251603:C:T	rs2498608	C	T	C	Hoxa9_MA0594.1	9	1	+	9.642272946632424	7.017559728048186	ATAATAAATCA
chr9	10759346	10759347	chr9:10759347:A:G	rs16926427	A	G	A	Hoxa9_MA0594.1	4	1	-	9.581365958804113	2.672611179488892	CCCATGAATCA
chr9	11038793	11038794	chr9:11038794:G:C	rs10809306	G	C	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	11197937	11197938	chr9:11197938:C:A	rs12376574	C	A	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	11794275	11794276	chr9:11794276:C:A	rs12005306	C	A	c	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	11962517	11962518	chr9:11962518:C:T	rs77671050	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	11962559	11962560	chr9:11962560:C:T	rs58275674	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	12599560	12599561	chr9:12599561:C:T	rs13283146	C	T	C	Hoxa9_MA0594.1	0	1	-	8.220877979215818	7.3556924664932675	GCAATCAATTA
chr9	12678623	12678624	chr9:12678624:C:A	rs7848943	C	A	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	12678651	12678652	chr9:12678652:G:C	rs7849172	G	C	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr9	12814432	12814433	chr9:12814433:A:T	rs80103914	A	T	A	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr9	12819591	12819592	chr9:12819592:A:T	rs78447550	A	T	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	13267682	13267683	chr9:13267683:T:C	rs762973177	T	C	T	Hoxa9_MA0594.1	5	1	-	9.283125442814011	6.766981631017401	GCCATACATCA
chr9	13323494	13323495	chr9:13323495:C:A	rs7866658	C	A	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	13333297	13333298	chr9:13333298:C:A	rs12342234	C	A	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	13352297	13352298	chr9:13352298:G:A	rs1147779	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	13715520	13715521	chr9:13715521:A:G	rs1475671	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	13759671	13759672	chr9:13759672:T:G	rs76213778	T	G	T	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	13941635	13941636	chr9:13941636:C:T	rs117419276	C	T	C	Hoxa9_MA0594.1	30	0	-	0	0	.
chr9	14089242	14089243	chr9:14089243:T:G	rs574460	T	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	14362342	14362343	chr9:14362343:C:T	rs114045065	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	14564155	14564156	chr9:14564156:G:C	rs10733284	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	14655281	14655282	chr9:14655282:G:A	rs10961638	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	14783738	14783739	chr9:14783739:T:C	rs59913446	T	C	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	14783769	14783770	chr9:14783770:G:T	rs58120444	G	T	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	14825710	14825711	chr9:14825711:A:G	rs2493630	A	G	A	Hoxa9_MA0594.1	7	1	+	9.60598952037383	2.703055846670909	GTCATCAATCT
chr9	14942207	14942208	chr9:14942208:A:G	chr9:14942208:A:G	A	G	A	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	15077805	15077806	chr9:15077806:T:C	rs10810339	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	15077815	15077816	chr9:15077816:T:C	rs10961866	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	15078080	15078081	chr9:15078081:T:A	rs4741451	T	A	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	15293947	15293948	chr9:15293948:C:T	rs6474902	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	15306293	15306294	chr9:15306294:A:C	rs10810374	A	C	A	Hoxa9_MA0594.1	6	1	+	8.431006454478752	5.19358570591369	TCAATAAATCA
chr9	15870720	15870721	chr9:15870721:G:C	rs770205	G	C	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	16019791	16019792	chr9:16019792:T:C	rs10962256	T	C	T	Hoxa9_MA0594.1	22	0	+	0	0	.
chr9	16023507	16023508	chr9:16023508:T:C	rs112481433	T	C	T	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	16040317	16040318	chr9:16040318:C:G	rs79015806	C	G	C	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	16209290	16209291	chr9:16209291:C:A	rs114280444	C	A	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	16266733	16266734	chr9:16266734:C:T	rs7857514	C	T	C	Hoxa9_MA0594.1	1	1	+	11.967129168713758	11.075579407603364	GCCATCAATCA
chr9	16410957	16410958	chr9:16410958:G:C	rs9407774	G	C	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	16575600	16575601	chr9:16575601:A:C	rs114651003	A	C	A	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	16654037	16654038	chr9:16654038:C:A	rs76914288	C	A	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	16720199	16720200	chr9:16720200:C:G	rs10756790	C	G	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	16876296	16876297	chr9:16876297:T:G	rs12350807	T	G	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	17580197	17580198	chr9:17580198:T:C	rs146817496	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	17758128	17758129	chr9:17758129:C:T	rs190487788	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	17839308	17839309	chr9:17839309:A:C	rs7019050	A	C	A	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	17963941	17963942	chr9:17963942:G:A	rs1329914	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	17987409	17987410	chr9:17987410:C:T	rs2891117	C	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	18213314	18213315	chr9:18213315:G:C	rs75915897	G	C	G	Hoxa9_MA0594.1	0	1	-	8.45982798789041	8.88286440866876	CCAATGAATCA
chr9	18327285	18327286	chr9:18327286:C:T	rs4291363	C	T	T	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	18470727	18470728	chr9:18470728:T:C	rs17206286	T	C	T	Hoxa9_MA0594.1	4	1	+	7.1426138406622535	0.23385906134703394	CCCATAAAGCA
chr9	18606769	18606770	chr9:18606770:C:A	rs1889008	C	A	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	18606793	18606794	chr9:18606794:C:G	chr9:18606794:C:G	C	G	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	18708729	18708730	chr9:18708730:C:T	rs10963731	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	18795927	18795928	chr9:18795928:C:T	rs4453328	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr9	19136367	19136368	chr9:19136368:C:A	rs9695394	C	A	C	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr9	19154573	19154574	chr9:19154574:A:G	rs10964006	A	G	a	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	19517585	19517586	chr9:19517586:G:C	rs113350389	G	C	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	19759005	19759006	chr9:19759006:G:A	rs13296551	G	A	G	Hoxa9_MA0594.1	30	0	-	0	0	.
chr9	19913351	19913352	chr9:19913352:C:G	rs72692011	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	19913461	19913462	chr9:19913462:A:G	rs12378863	A	G	A	Hoxa9_MA0594.1	8	1	-	8.592331766899832	1.7190437167999435	GCCCTAAATCA
chr9	19927730	19927731	chr9:19927731:C:T	rs996671662	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	19946552	19946553	chr9:19946553:G:A	rs55981614	G	A	G	Hoxa9_MA0594.1	3	1	+	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr9	19982456	19982457	chr9:19982457:T:C	rs12057044	T	C	T	Hoxa9_MA0594.1	3	1	-	9.130625221022317	6.1488287936134585	GCTATAAATCT
chr9	20896899	20896900	chr9:20896900:G:A	rs4474106	G	A	A	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	21005397	21005398	chr9:21005398:A:C	rs4129715	A	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	21639132	21639133	chr9:21639133:G:C	rs12115636	G	C	-	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	21679152	21679153	chr9:21679153:A:G	rs6475544	A	G	C	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	21685821	21685822	chr9:21685822:C:A	rs190050600	C	A	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	22362742	22362743	chr9:22362743:C:T	rs10738623	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	22383816	22383817	chr9:22383817:A:G	rs4452893	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	22942770	22942771	chr9:22942771:T:C	rs9886665	T	C	T	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	23005955	23005956	chr9:23005956:T:C	rs117452802	T	C	T	Hoxa9_MA0594.1	7	1	-	8.642730421240351	1.7397967475374307	GAAATCAATCA
chr9	23484920	23484921	chr9:23484921:A:G	rs274931	A	G	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	23581458	23581459	chr9:23581459:T:A	rs10965937	T	A	A	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	23686350	23686351	chr9:23686351:A:C	rs7873964	A	C	A	Hoxa9_MA0594.1	10	1	-	10.627919883371188	5.460736784847953	CCCATAAATCT
chr9	23852267	23852268	chr9:23852268:A:G	rs10811980	A	G	G	Hoxa9_MA0594.1	21	0	-	0	0	.
chr9	24159116	24159117	chr9:24159117:G:A	rs17176228	G	A	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	24934860	24934861	chr9:24934861:C:G	rs17773000	C	G	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	25133204	25133205	chr9:25133205:T:C	rs3118270	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	25604886	25604887	chr9:25604887:G:A	rs10123020	G	A	a	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	25620045	25620046	chr9:25620046:A:G	rs73480888	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	25751462	25751463	chr9:25751463:C:T	rs17290832	C	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	26033546	26033547	chr9:26033547:T:G	rs74467602	T	G	T	Hoxa9_MA0594.1	2	1	-	10.845591197800056	11.967129168713758	GCAATCAATCA
chr9	26303274	26303275	chr9:26303275:G:T	rs62543080	G	T	G	Hoxa9_MA0594.1	1	1	-	9.45271635848298	7.249855581923276	GCCATAAATAA
chr9	27053428	27053429	chr9:27053429:T:G	rs10812522	T	G	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	27126695	27126696	chr9:27126696:A:C	rs140741617	A	C	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	27232001	27232002	chr9:27232002:A:G	rs7854364	A	G	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	27427549	27427550	chr9:27427550:G:A	rs141580990	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	27520151	27520152	chr9:27520152:C:A	rs75689394	C	A	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr9	27609828	27609829	chr9:27609829:T:A	rs812856	T	A	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	27659776	27659777	chr9:27659777:C:T	rs759420023	C	T	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	28207701	28207702	chr9:28207702:T:A	rs73445990	T	A	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	28300371	28300372	chr9:28300372:G:A	rs67652289	G	A	G	Hoxa9_MA0594.1	0	1	+	10.046798085586536	9.181612572863987	GCTATCAATCA
chr9	28396246	28396247	chr9:28396247:C:T	rs28409695	C	T	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	28396252	28396253	chr9:28396253:A:G	rs10968558	A	G	A	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr9	28430174	28430175	chr9:28430175:G:T	rs2026372	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	28847405	28847406	chr9:28847406:C:T	rs1041459700	C	T	C	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	28868461	28868462	chr9:28868462:C:A	rs77766531	C	A	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	28919266	28919267	chr9:28919267:A:G	rs4879279	A	G	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	28929627	28929628	chr9:28929628:G:T	rs7870709	G	T	T	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	29264767	29264768	chr9:29264768:G:C	rs10120092	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	29266225	29266226	chr9:29266226:T:G	rs12555430	T	G	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	29377749	29377750	chr9:29377750:T:C	rs7851816	T	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	29434541	29434542	chr9:29434542:C:T	rs7861521	C	T	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	29834366	29834367	chr9:29834367:A:G	rs112224552	A	G	A	Hoxa9_MA0594.1	3	1	+	8.425059106811483	5.443262679402625	CACATAAATCT
chr9	30077006	30077007	chr9:30077007:G:A	rs2360147	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	30120758	30120759	chr9:30120759:T:C	rs73436519	T	C	T	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	30239795	30239796	chr9:30239796:T:G	rs10969595	T	G	T	Hoxa9_MA0594.1	10	1	-	9.7350295955293	7.271874352893139	ACTATAAATCA
chr9	31266516	31266517	chr9:31266517:A:C	rs1012450	A	C	C	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	31273402	31273403	chr9:31273403:T:C	rs1814088	T	C	t	Hoxa9_MA0594.1	3	1	-	8.561166597372587	5.5793701699637275	GTCATAAATAA
chr9	31279599	31279600	chr9:31279600:C:T	rs78455716	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	31598413	31598414	chr9:31598414:T:C	rs35037448	T	C	C	Hoxa9_MA0594.1	1	1	+	9.285628926363104	10.1771786874735	CTTATAAATCA
chr9	32166112	32166113	chr9:32166113:G:A	rs10970823	G	A	G	Hoxa9_MA0594.1	29	0	+	0	0	.
chr9	32268559	32268560	chr9:32268560:A:G	rs1537159	A	G	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	32502945	32502946	chr9:32502946:A:C	rs658253	A	C	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	32579733	32579734	chr9:32579734:G:T	rs72712923	G	T	G	Hoxa9_MA0594.1	9	1	-	8.689816197693718	5.621986364797626	CTCATGAATCA
chr9	32633320	32633321	chr9:32633321:G:C	rs183134246	G	C	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr9	32728429	32728430	chr9:32728430:T:G	rs12552298	T	G	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	32728464	32728465	chr9:32728465:A:G	rs12553526	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	33017799	33017800	chr9:33017800:G:T	rs10971327	G	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	33017815	33017816	chr9:33017816:T:C	rs10971328	T	C	T	Hoxa9_MA0594.1	2	1	-	9.53100501591131	4.128642999076673	CTAATCAATCA
chr9	33141753	33141754	chr9:33141754:G:A	rs2770807	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	33141792	33141793	chr9:33141793:C:T	rs10813955	C	T	c	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	33225730	33225731	chr9:33225731:T:C	rs73474586	T	C	T	Hoxa9_MA0594.1	3	1	-	11.205960009490326	8.224163582081468	CTCATAAATCA
chr9	33410926	33410927	chr9:33410927:G:C	rs1186007914	G	C	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	33466860	33466861	chr9:33466861:C:T	rs507758	C	T	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr9	33466868	33466869	chr9:33466869:T:C	rs116924567	T	C	t	Hoxa9_MA0594.1	7	1	-	8.484451549460127	1.581517875757207	GTAATCAATCT
chr9	33657526	33657527	chr9:33657527:T:C	chr9:33657527:T:C	T	C	.	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	33731380	33731381	chr9:33731381:T:C	rs1769723	T	C	C	Hoxa9_MA0594.1	16	0	+	0	0	.
chr9	33742261	33742262	chr9:33742262:C:G	rs2734595	C	G	C	Hoxa9_MA0594.1	5	1	-	8.08407129645524	10.046798085586536	GCTATGAATCA
chr9	33749364	33749365	chr9:33749365:G:C	rs855584	G	C	g	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	34271382	34271383	chr9:34271383:T:C	rs7868756	T	C	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	34271687	34271688	chr9:34271688:C:T	rs10123931	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	34272259	34272260	chr9:34272260:A:T	rs1929638	A	T	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	34346283	34346284	chr9:34346284:C:T	rs61573237	C	T	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	34558284	34558285	chr9:34558285:G:A	rs112111678	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	34734588	34734589	chr9:34734589:C:T	rs573957130	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr9	35757483	35757484	chr9:35757484:A:T	rs111294412	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	35854439	35854440	chr9:35854440:A:C	rs7035913	A	C	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	36215812	36215813	chr9:36215813:T:C	rs1254216028	T	C	T	Hoxa9_MA0594.1	7	1	-	10.004402379582464	3.1014687058795434	GCCATGAATCA
chr9	36732971	36732972	chr9:36732972:T:C	rs10738975	T	C	C	Hoxa9_MA0594.1	8	1	+	8.561166597372587	1.687878547272697	GTCATAAATAA
chr9	36798148	36798149	chr9:36798149:G:C	rs2768620	G	C	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	36801148	36801149	chr9:36801149:A:T	rs2025840	A	T	A	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	36806705	36806706	chr9:36806706:G:A	rs117289211	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	36813282	36813283	chr9:36813283:A:G	rs111294515	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr9	36841206	36841207	chr9:36841207:G:A	rs73451132	G	A	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	36846418	36846419	chr9:36846419:T:C	rs78232477	T	C	T	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	36967065	36967066	chr9:36967066:C:T	rs1320473	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	36981824	36981825	chr9:36981825:T:C	rs12554848	T	C	T	Hoxa9_MA0594.1	4	1	+	8.431006454478752	1.5222516751635324	TCAATAAATCA
chr9	37620429	37620430	chr9:37620430:T:C	rs79734737	T	C	T	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	37679876	37679877	chr9:37679877:A:G	rs16934370	A	G	A	Hoxa9_MA0594.1	7	1	+	8.729708420148697	1.826774746445777	GCCATCCATCA
chr9	37708842	37708843	chr9:37708843:T:C	rs6476660	T	C	T	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	37752949	37752950	chr9:37752950:T:C	rs7873440	T	C	C	Hoxa9_MA0594.1	1	1	+	9.037868572125442	9.929418333235837	GTAATAAATCT
chr9	37752968	37752969	chr9:37752969:C:T	rs186996030	C	T	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	37938603	37938604	chr9:37938604:C:T	rs146579423	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	37938604	37938605	chr9:37938605:G:A	rs545741617	G	A	G	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	38031800	38031801	chr9:38031801:A:C	rs942935949	A	C	A	Hoxa9_MA0594.1	10	1	+	11.628996430268678	9.165841187632518	GTCATAAATCA
chr9	38076570	38076571	chr9:38076571:G:A	rs139693736	G	A	G	Hoxa9_MA0594.1	15	0	+	0	0	.
chr9	38141785	38141786	chr9:38141786:G:C	rs562204774	G	C	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	38186434	38186435	chr9:38186435:A:G	rs10973692	A	G	A	Hoxa9_MA0594.1	4	1	-	7.66103487567689	0.75228009636167	CCTATGAATCA
chr9	38228626	38228627	chr9:38228627:A:C	rs34426926	A	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	38313297	38313298	chr9:38313298:A:G	rs645259	A	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	38712688	38712689	chr9:38712689:T:A	rs7868611	T	A	T	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	39582888	39582889	chr9:39582889:A:T	rs1269095890	A	T	a	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	40935570	40935571	chr9:40935571:G:A	rs1260361194	G	A	.	Hoxa9_MA0594.1	16	0	+	0	0	.
chr9	40935576	40935577	chr9:40935577:G:A	rs1312962314	G	A	.	Hoxa9_MA0594.1	22	0	+	0	0	.
chr9	40988532	40988533	chr9:40988533:T:C	rs878971093	T	C	.	Hoxa9_MA0594.1	16	0	+	0	0	.
chr9	42243335	42243336	chr9:42243336:G:A	rs3124904	G	A	g	Hoxa9_MA0594.1	1	1	-	7.983126471253447	7.091576710143054	GCCATAAATAT
chr9	42339911	42339912	chr9:42339912:G:A	rs1475439158	G	A	-	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr9	42339916	42339917	chr9:42339917:C:G	rs1185804601	C	G	-	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	42470394	42470395	chr9:42470395:G:A	rs7022314	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	42947231	42947232	chr9:42947232:A:G	rs75458714	A	G	.	Hoxa9_MA0594.1	4	1	-	8.99912740272714	2.090372623411919	TCCATCAATCA
chr9	61868011	61868012	chr9:61868012:G:A	rs200212556	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr9	62814657	62814658	chr9:62814658:C:T	rs7026273	C	T	.	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	65424362	65424363	chr9:65424363:C:T	rs1255826105	C	T	.	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	65562792	65562793	chr9:65562793:T:C	rs1266723446	T	C	.	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	67171795	67171796	chr9:67171796:A:G	rs62565330	A	G	A	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	68501284	68501285	chr9:68501285:C:T	rs76544073	C	T	C	Hoxa9_MA0594.1	1	1	+	8.41793993009146	7.526390168981065	ACCATACATCA
chr9	68538443	68538444	chr9:68538444:C:G	rs186742780	C	G	C	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	68609879	68609880	chr9:68609880:G:C	rs10781073	G	C	G	Hoxa9_MA0594.1	1	1	-	8.729708420148697	5.670940458501736	GCCATCCATCA
chr9	68789121	68789122	chr9:68789122:A:G	rs78759163	A	G	A	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	68934225	68934226	chr9:68934226:A:G	rs17059238	A	G	A	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	68947997	68947998	chr9:68947998:T:C	rs1414953	T	C	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr9	68949769	68949770	chr9:68949770:G:A	rs79037883	G	A	G	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	69017164	69017165	chr9:69017165:C:T	rs4745523	C	T	C	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	69097307	69097308	chr9:69097308:C:T	rs11790543	C	T	C	Hoxa9_MA0594.1	2	1	+	11.205960009490326	9.285628926363104	CTCATAAATCA
chr9	69099646	69099647	chr9:69099647:G:A	rs34965002	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr9	69099653	69099654	chr9:69099654:A:G	rs116401773	A	G	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	69118733	69118734	chr9:69118734:G:A	rs7860277	G	A	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	69131921	69131922	chr9:69131922:C:T	rs7034179	C	T	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr9	69131954	69131955	chr9:69131955:C:T	rs7034303	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	69371888	69371889	chr9:69371889:A:C	rs10780321	A	C	a	Hoxa9_MA0594.1	6	1	+	9.980405685077507	6.742984936512444	ACAATCAATCA
chr9	69392565	69392566	chr9:69392566:C:A	rs10453247	C	A	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	69461489	69461490	chr9:69461490:A:G	rs28564328	A	G	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	69673006	69673007	chr9:69673007:T:G	rs758479324	T	G	T	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	69847796	69847797	chr9:69847797:T:C	rs540519219	T	C	T	Hoxa9_MA0594.1	7	1	-	7.173729231511967	0.27079555780904707	ACCCTCAATCA
chr9	69937490	69937491	chr9:69937491:G:A	rs7870323	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	70043363	70043364	chr9:70043364:C:A	rs11141404	C	A	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	70053951	70053952	chr9:70053952:T:C	rs72709197	T	C	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	70112825	70112826	chr9:70112826:G:A	rs6559970	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	70303974	70303975	chr9:70303975:T:C	rs11998951	T	C	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	70362356	70362357	chr9:70362357:T:C	rs10780924	T	C	T	Hoxa9_MA0594.1	3	1	-	8.431006454478752	5.449210027069893	TCAATAAATCA
chr9	70563745	70563746	chr9:70563746:G:A	rs4745016	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	70878811	70878812	chr9:70878812:G:A	rs1890016	G	A	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	71076266	71076267	chr9:71076267:C:T	rs11142684	C	T	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	71253238	71253239	chr9:71253239:A:T	rs4744627	A	T	T	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr9	71364561	71364562	chr9:71364562:A:C	rs1431178	A	C	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	71595025	71595026	chr9:71595026:A:G	rs7026087	A	G	A	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	71937317	71937318	chr9:71937318:G:A	rs17491074	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	72035540	72035541	chr9:72035541:G:A	rs10114298	G	A	g	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	72041855	72041856	chr9:72041856:C:G	rs12003806	C	G	c	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	72210790	72210791	chr9:72210791:T:C	rs11143170	T	C	T	Hoxa9_MA0594.1	10	1	-	12.097509770600722	5.460736784847953	CCCATAAATCA
chr9	72315434	72315435	chr9:72315435:A:G	rs1407474	A	G	G	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	72354159	72354160	chr9:72354160:G:A	rs3398	G	A	A	Hoxa9_MA0594.1	0	1	+	8.159236377169226	7.294050864446675	GTCATAAAACA
chr9	72354645	72354646	chr9:72354646:A:G	rs149082916	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr9	72727114	72727115	chr9:72727115:A:C	rs2256491	A	C	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	72753486	72753487	chr9:72753487:C:T	rs75486909	C	T	c	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	72951009	72951010	chr9:72951010:C:T	rs8187872	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr9	72997265	72997266	chr9:72997266:G:T	rs6560311	G	T	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	73141927	73141928	chr9:73141928:C:T	rs62541549	C	T	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr9	73438479	73438480	chr9:73438480:T:C	rs7045515	T	C	T	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	74269182	74269183	chr9:74269183:A:T	rs10869370	A	T	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	74275350	74275351	chr9:74275351:A:C	rs10869373	A	C	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	74551485	74551486	chr9:74551486:C:T	rs75657768	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	75068181	75068182	chr9:75068182:C:T	rs150281650	C	T	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	75132554	75132555	chr9:75132555:A:G	rs56025671	A	G	A	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	75528234	75528235	chr9:75528235:A:T	rs1332519	A	T	A	Hoxa9_MA0594.1	4	1	-	8.294678504924521	1.3859237256092996	GACATCAATCT
chr9	75599740	75599741	chr9:75599741:T:C	rs72740236	T	C	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	75671624	75671625	chr9:75671625:A:G	rs114892023	A	G	A	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	75754253	75754254	chr9:75754254:G:A	rs76106325	G	A	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr9	75892487	75892488	chr9:75892488:T:C	rs147961474	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	75911562	75911563	chr9:75911563:A:T	rs183409929	A	T	A	Hoxa9_MA0594.1	5	1	+	9.196147443905666	6.222591413910663	GAAATAAATCA
chr9	75964536	75964537	chr9:75964537:G:A	rs7860357	G	A	G	Hoxa9_MA0594.1	0	1	-	7.1129682170592226	4.568002871850955	CCCATAACTCA
chr9	75964655	75964656	chr9:75964656:G:A	rs138749788	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	76044314	76044315	chr9:76044315:G:C	rs10869684	G	C	C	Hoxa9_MA0594.1	2	1	-	9.452499902096816	2.928599914348477	AACATAAATCA
chr9	76333445	76333446	chr9:76333446:A:G	rs1908497	A	G	N	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	76595120	76595121	chr9:76595121:G:C	rs13296594	G	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	76725199	76725200	chr9:76725200:A:G	rs4744805	A	G	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	76867060	76867061	chr9:76867061:G:A	rs114658846	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	77251335	77251336	chr9:77251336:A:G	rs9987930	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	77535259	77535260	chr9:77535260:T:C	rs11145468	T	C	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	77678139	77678140	chr9:77678140:G:T	rs145925840	G	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	77678158	77678159	chr9:77678159:C:T	rs11793204	C	T	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	77820514	77820515	chr9:77820515:A:G	rs1410558	A	G	A	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	78130079	78130080	chr9:78130080:C:T	rs80204614	C	T	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr9	78132980	78132981	chr9:78132981:C:T	rs7854825	C	T	C	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	78211166	78211167	chr9:78211167:A:G	rs73653045	A	G	A	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	78366606	78366607	chr9:78366607:C:A	rs141223666	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	78449459	78449460	chr9:78449460:C:T	rs909093804	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	78449482	78449483	chr9:78449483:G:A	rs10780237	G	A	G	Hoxa9_MA0594.1	1	1	-	10.53382270774282	9.642272946632424	ACAATAAATCA
chr9	78505986	78505987	chr9:78505987:G:C	rs2993701	G	C	C	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	78676923	78676924	chr9:78676924:T:A	rs58292800	T	A	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	78676930	78676931	chr9:78676931:A:T	rs57827337	A	T	A	Hoxa9_MA0594.1	10	1	-	8.577208198357003	10.046798085586536	GCTATCAATCT
chr9	78779049	78779050	chr9:78779050:A:C	rs9785281	A	C	A	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	78858393	78858394	chr9:78858394:A:C	rs6559418	A	C	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	78858393	78858394	chr9:78858394:A:T	chr9:78858394:A:T	A	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	79735151	79735152	chr9:79735152:C:T	rs12555335	C	T	T	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr9	79920967	79920968	chr9:79920968:A:G	rs267574	A	G	G	Hoxa9_MA0594.1	7	1	+	10.97597179968702	4.0730381259841	CCAATAAATCA
chr9	79940320	79940321	chr9:79940321:T:G	rs406950	T	G	G	Hoxa9_MA0594.1	4	1	+	8.773111023127315	1.8643562438120942	CAAATAAATCA
chr9	79976211	79976212	chr9:79976212:G:A	rs10780346	G	A	A	Hoxa9_MA0594.1	9	1	-	6.766981631017401	4.142268412433163	GCCATGCATCA
chr9	79992949	79992950	chr9:79992950:G:A	rs7048183	G	A	A	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	80632146	80632147	chr9:80632147:A:G	rs11138770	A	G	A	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	80665056	80665057	chr9:80665057:G:T	rs113790629	G	T	G	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	80696223	80696224	chr9:80696224:T:C	rs7036247	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr9	80703903	80703904	chr9:80703904:G:A	rs17083912	G	A	G	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr9	80798866	80798867	chr9:80798867:A:G	rs189315336	A	G	A	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	81040852	81040853	chr9:81040853:C:T	rs1412758	C	T	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr9	81392538	81392539	chr9:81392539:G:A	rs3860895	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	81394665	81394666	chr9:81394666:T:C	rs12348832	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	81495768	81495769	chr9:81495769:A:C	rs646942	A	C	C	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	81660792	81660793	chr9:81660793:G:T	rs72747288	G	T	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	81662183	81662184	chr9:81662184:A:G	rs73647843	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	82149108	82149109	chr9:82149109:T:G	chr9:82149109:T:G	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	82436790	82436791	chr9:82436791:A:G	rs11139569	A	G	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	82490334	82490335	chr9:82490335:G:A	rs112719999	G	A	A	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	82513638	82513639	chr9:82513639:A:G	rs11793868	A	G	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	82555396	82555397	chr9:82555397:G:A	rs116414975	G	A	G	Hoxa9_MA0594.1	1	1	-	7.0122332387752895	6.120683477664895	GCCATCAAGCA
chr9	82555414	82555415	chr9:82555415:A:G	rs56848306	A	G	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	82568080	82568081	chr9:82568081:C:T	rs1933016	C	T	C	Hoxa9_MA0594.1	-6	0	+	0	0	.
chr9	82711512	82711513	chr9:82711513:T:C	rs509091	T	C	C	Hoxa9_MA0594.1	8	1	+	8.002415769692018	1.129127719592129	CCAATTAATCA
chr9	82761237	82761238	chr9:82761238:C:A	rs7867099	C	A	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	82764359	82764360	chr9:82764360:G:A	rs116017670	G	A	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr9	82764396	82764397	chr9:82764397:A:T	rs75424590	A	T	A	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	82895706	82895707	chr9:82895707:T:C	rs72740822	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	83012624	83012625	chr9:83012625:A:C	rs10121395	A	C	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	83012638	83012639	chr9:83012639:C:T	rs4146961	C	T	T	Hoxa9_MA0594.1	2	1	+	8.66099466428206	6.740663581154836	TTCATAAATCA
chr9	83290945	83290946	chr9:83290946:C:T	rs942280	C	T	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	83290991	83290992	chr9:83290992:A:G	rs66572061	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	83340758	83340759	chr9:83340759:C:A	rs4877755	C	A	C	Hoxa9_MA0594.1	3	1	-	7.440758349612847	3.579818134414018	CCAGTCAATCA
chr9	83347400	83347401	chr9:83347401:T:A	rs10746700	T	A	T	Hoxa9_MA0594.1	8	1	+	9.00428321168444	5.534523158584987	GTCATAAATTA
chr9	83413611	83413612	chr9:83413612:G:A	rs17086237	G	A	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	83424771	83424772	chr9:83424772:T:C	rs11140078	T	C	C	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	84154322	84154323	chr9:84154323:A:G	rs76229563	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	84218722	84218723	chr9:84218723:C:G	rs1889902	C	G	G	Hoxa9_MA0594.1	2	1	+	9.581365958804113	3.0574659710557723	CCCATGAATCA
chr9	84277732	84277733	chr9:84277733:G:A	rs41282425	G	A	G	Hoxa9_MA0594.1	9	1	-	11.075579407603364	8.450866189019125	GTCATCAATCA
chr9	84285031	84285032	chr9:84285032:A:C	rs4877832	A	C	C	Hoxa9_MA0594.1	21	0	-	0	0	.
chr9	84297071	84297072	chr9:84297072:G:A	rs11568383	G	A	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	84331691	84331692	chr9:84331692:T:C	rs980292	T	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	84660432	84660433	chr9:84660433:G:T	rs1147198	G	T	G	Hoxa9_MA0594.1	1	1	-	7.260118532919163	5.0572577563594585	GCCATCCATCT
chr9	84711078	84711079	chr9:84711079:A:G	rs1659400	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	84772706	84772707	chr9:84772707:A:G	rs1573219	A	G	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	84828271	84828272	chr9:84828272:G:A	rs10114276	G	A	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	84892016	84892017	chr9:84892017:T:G	rs11140799	T	G	T	Hoxa9_MA0594.1	10	1	-	9.196147443905666	6.732992201269505	GAAATAAATCA
chr9	84916873	84916874	chr9:84916874:G:C	rs75215432	G	C	G	Hoxa9_MA0594.1	2	1	-	8.673564251247663	2.149664263499324	ACCGTAAATCA
chr9	84987982	84987983	chr9:84987983:C:T	rs11795386	C	T	C	Hoxa9_MA0594.1	9	1	+	11.544092747935409	8.91937952935117	CCCATCAATCA
chr9	85025720	85025721	chr9:85025721:A:G	rs1387923	A	G	A	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	85089579	85089580	chr9:85089580:G:A	rs628947	G	A	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	85387964	85387965	chr9:85387965:C:T	rs80113771	C	T	C	Hoxa9_MA0594.1	19	0	+	0	0	.
chr9	85428341	85428342	chr9:85428342:A:G	rs12555297	A	G	A	Hoxa9_MA0594.1	4	1	-	10.317685414819367	3.408930635504147	GACATAAATCA
chr9	85742355	85742356	chr9:85742356:A:C	rs879267028	A	C	.	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	85742358	85742359	chr9:85742359:C:T	rs556632749	C	T	.	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	85742360	85742361	chr9:85742361:C:T	rs771221621	C	T	.	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	85743428	85743429	chr9:85743429:G:A	rs115355804	G	A	.	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	86338606	86338607	chr9:86338607:C:T	rs1570587	C	T	C	Hoxa9_MA0594.1	0	1	+	10.1771786874735	7.632213342265231	CCTATAAATCA
chr9	86470415	86470416	chr9:86470416:A:T	rs448707	A	T	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	86598051	86598052	chr9:86598052:T:C	rs73653257	T	C	T	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	86669950	86669951	chr9:86669951:T:G	chr9:86669951:T:G	T	G	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	86684308	86684309	chr9:86684309:T:C	rs59997140	T	C	T	Hoxa9_MA0594.1	15	0	+	0	0	.
chr9	86736157	86736158	chr9:86736158:C:T	rs11141527	C	T	T	Hoxa9_MA0594.1	27	0	-	0	0	.
chr9	86736177	86736178	chr9:86736178:T:C	rs10046800	T	C	T	Hoxa9_MA0594.1	7	1	-	8.908361207066799	2.005427533363878	GGCATCAATCA
chr9	87147183	87147184	chr9:87147184:C:T	rs113610249	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	87489438	87489439	chr9:87489439:C:T	rs13299771	C	T	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr9	87866031	87866032	chr9:87866032:C:A	rs4878141	C	A	-	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	88234503	88234504	chr9:88234504:G:A	rs1550285	G	A	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	88234516	88234517	chr9:88234517:C:A	rs1550284	C	A	A	Hoxa9_MA0594.1	0	1	+	8.62774971750127	8.18560062555707	CCCATAAAACA
chr9	88260382	88260383	chr9:88260383:C:T	rs753827	C	T	c	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr9	89049900	89049901	chr9:89049901:G:T	rs72618184	G	T	G	Hoxa9_MA0594.1	22	0	+	0	0	.
chr9	89138884	89138885	chr9:89138885:G:C	rs10780224	G	C	C	Hoxa9_MA0594.1	9	1	-	9.112852618472068	2.3145216567712206	GTCATGAATCA
chr9	89283291	89283292	chr9:89283292:T:C	rs13298931	T	C	T	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr9	89474100	89474101	chr9:89474101:C:G	rs28705236	C	G	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	89476749	89476750	chr9:89476750:G:C	rs62549808	G	C	G	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	89540955	89540956	chr9:89540956:A:G	rs1854554	A	G	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	89678117	89678118	chr9:89678118:C:T	rs72752908	C	T	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	89847826	89847827	chr9:89847827:G:C	rs1021957731	G	C	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	89851394	89851395	chr9:89851395:T:G	rs902599031	T	G	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	89870288	89870289	chr9:89870289:G:A	rs970074155	G	A	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	89929780	89929781	chr9:89929781:G:C	rs192941839	G	C	G	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr9	90340488	90340489	chr9:90340489:G:C	rs1012160	G	C	c	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	90340510	90340511	chr9:90340511:G:A	rs1012161	G	A	g	Hoxa9_MA0594.1	1	1	-	11.101943655991207	10.210393894880813	ACCATCAATCA
chr9	90806971	90806972	chr9:90806972:C:T	rs2115485	C	T	C	Hoxa9_MA0594.1	1	1	-	7.7868232361530945	8.642730421240351	GGAATCAATCA
chr9	90944986	90944987	chr9:90944987:G:C	rs291745	G	C	G	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr9	90954624	90954625	chr9:90954625:G:A	rs10991720	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	90954627	90954628	chr9:90954628:T:C	rs188442	T	C	T	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	90988513	90988514	chr9:90988514:C:T	rs60129254	C	T	T	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	91032257	91032258	chr9:91032258:C:G	rs75886417	C	G	C	Hoxa9_MA0594.1	3	1	+	7.147364983124122	8.093782980194504	GTCCTCAATCA
chr9	91047631	91047632	chr9:91047632:G:T	rs116898310	G	T	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	91203016	91203017	chr9:91203017:A:G	rs7047354	A	G	A	Hoxa9_MA0594.1	7	1	+	8.382435955163896	1.4795022814609753	GCAATCAATCC
chr9	91517119	91517120	chr9:91517120:C:T	rs10820865	C	T	T	Hoxa9_MA0594.1	0	1	-	10.845591197800056	9.980405685077507	GCAATCAATCA
chr9	91795683	91795684	chr9:91795684:C:T	rs148098645	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	91835363	91835364	chr9:91835364:G:A	rs7867707	G	A	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	91995533	91995534	chr9:91995534:A:T	rs112883891	A	T	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	92440124	92440125	chr9:92440125:G:A	rs767038839	G	A	G	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	92546364	92546365	chr9:92546365:T:C	rs2007245	T	C	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	92674918	92674919	chr9:92674919:A:G	rs72756458	A	G	A	Hoxa9_MA0594.1	5	1	+	8.364858248347181	5.848714436550571	CTCATATATCA
chr9	92946927	92946928	chr9:92946928:G:A	rs12003885	G	A	G	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	93118771	93118772	chr9:93118772:C:T	rs13285107	C	T	C	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	93586006	93586007	chr9:93586007:T:C	rs928369	T	C	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	93819192	93819193	chr9:93819193:C:T	rs117131268	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	93881869	93881870	chr9:93881870:T:G	rs7855059	T	G	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	93881896	93881897	chr9:93881897:C:G	rs6479518	C	G	C	Hoxa9_MA0594.1	9	1	+	9.929418333235837	3.13108737153499	GCAATAAATCT
chr9	94173237	94173238	chr9:94173238:C:T	rs146076319	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	94584696	94584697	chr9:94584697:A:G	rs2292900	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	94656686	94656687	chr9:94656687:A:C	rs73653631	A	C	A	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	94803034	94803035	chr9:94803035:A:G	rs356123	A	G	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	94874487	94874488	chr9:94874488:C:T	rs73657009	C	T	C	Hoxa9_MA0594.1	10	1	+	8.189387744188851	9.182953099595478	CTCATCAATCC
chr9	94945971	94945972	chr9:94945972:T:C	rs183185130	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr9	95074739	95074740	chr9:95074740:G:C	rs7042293	G	C	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr9	95093101	95093102	chr9:95093102:T:C	rs73654521	T	C	C	Hoxa9_MA0594.1	3	1	-	9.472796552016483	6.491000124607625	CCCATAAATTA
chr9	95093121	95093122	chr9:95093122:G:T	rs115345060	G	T	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	95333425	95333426	chr9:95333426:G:C	rs1027710	G	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	95409802	95409803	chr9:95409803:T:C	rs7389278	T	C	C	Hoxa9_MA0594.1	15	0	-	0	0	.
chr9	95617242	95617243	chr9:95617243:A:G	rs4743093	A	G	G	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	95620667	95620668	chr9:95620668:C:T	rs7854560	C	T	T	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	95718333	95718334	chr9:95718334:C:T	rs7873889	C	T	C	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	95764389	95764390	chr9:95764390:G:A	rs10117423	G	A	A	Hoxa9_MA0594.1	9	1	-	8.159236377169226	5.534523158584987	GTCATAAAACA
chr9	95852659	95852660	chr9:95852660:T:A	rs62559029	T	A	T	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	95879741	95879742	chr9:95879742:G:A	rs4743383	G	A	G	Hoxa9_MA0594.1	-10	0	-	0	0	.
chr9	95993547	95993548	chr9:95993548:G:A	rs76207459	G	A	G	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	96023234	96023235	chr9:96023235:G:A	rs114800090	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	96160971	96160972	chr9:96160972:G:A	rs12352431	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr9	96160985	96160986	chr9:96160986:A:G	rs10819930	A	G	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	96175379	96175380	chr9:96175380:T:C	rs10512241	T	C	T	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	96197019	96197020	chr9:96197020:G:C	rs10121654	G	C	G	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	96204145	96204146	chr9:96204146:G:C	rs370183949	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	96240472	96240473	chr9:96240473:C:G	rs1927882	C	G	C	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	96327433	96327434	chr9:96327434:T:C	rs72603665	T	C	C	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	96778215	96778216	chr9:96778216:T:C	chr9:96778216:T:C	T	C	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr9	96778227	96778228	chr9:96778228:G:A	rs78086749	G	A	G	Hoxa9_MA0594.1	9	1	-	11.050956304149539	8.4262430855653	GCCATAAATCT
chr9	96875115	96875116	chr9:96875116:A:G	rs190570567	A	G	A	Hoxa9_MA0594.1	3	1	+	9.196147443905666	6.214351016496806	GAAATAAATCA
chr9	96875138	96875139	chr9:96875139:C:T	rs138334456	C	T	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	97513141	97513142	chr9:97513142:C:T	rs1052270	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	97554310	97554311	chr9:97554311:G:C	rs62560474	G	C	G	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	97851406	97851407	chr9:97851407:G:A	rs72753506	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	97851417	97851418	chr9:97851418:G:C	rs3758251	G	C	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	97910590	97910591	chr9:97910591:A:C	rs148247656	A	C	A	Hoxa9_MA0594.1	15	0	+	0	0	.
chr9	97986681	97986682	chr9:97986682:A:T	rs76408563	A	T	A	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	98250541	98250542	chr9:98250542:G:A	rs62574277	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	98323015	98323016	chr9:98323016:C:T	rs12378583	C	T	C	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	98437442	98437443	chr9:98437443:A:G	rs12337248	A	G	A	Hoxa9_MA0594.1	7	1	+	7.529537515497607	0.6266038417946866	TCCATCAATCT
chr9	98572273	98572274	chr9:98572274:A:G	rs1167769	A	G	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr9	98750752	98750753	chr9:98750753:C:T	rs961136784	C	T	C	Hoxa9_MA0594.1	9	1	+	7.440758349612847	4.816045131028608	CCAGTCAATCA
chr9	98750762	98750763	chr9:98750763:A:C	rs990985926	A	C	A	Hoxa9_MA0594.1	19	0	+	0	0	.
chr9	98895614	98895615	chr9:98895615:C:A	rs927467	C	A	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	98966891	98966892	chr9:98966892:A:T	rs4743299	A	T	A	Hoxa9_MA0594.1	28	0	-	0	0	.
chr9	99232020	99232021	chr9:99232021:A:G	rs17725572	A	G	A	Hoxa9_MA0594.1	1	1	-	9.285628926363104	10.1771786874735	CTTATAAATCA
chr9	99232032	99232033	chr9:99232033:C:T	rs17725597	C	T	C	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	99352676	99352677	chr9:99352677:T:A	rs12337701	T	A	T	Hoxa9_MA0594.1	6	1	-	7.173729231511967	4.332627470368821	ACCCTCAATCA
chr9	99820928	99820929	chr9:99820929:T:G	rs1369100933	T	G	T	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr9	100323200	100323201	chr9:100323201:A:G	rs117622161	A	G	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	100771721	100771722	chr9:100771722:A:G	rs1361252	A	G	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	101084970	101084971	chr9:101084971:G:A	rs35733350	G	A	G	Hoxa9_MA0594.1	28	0	-	0	0	.
chr9	101399659	101399660	chr9:101399660:T:C	rs2777331	T	C	T	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	101435494	101435495	chr9:101435495:C:T	rs515313	C	T	C	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	101533481	101533482	chr9:101533482:G:T	rs3818337	G	T	T	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	101533486	101533487	chr9:101533487:C:T	rs3818336	C	T	C	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	101533502	101533503	chr9:101533503:C:T	rs534370036	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	101537282	101537283	chr9:101537283:T:C	rs36004060	T	C	T	Hoxa9_MA0594.1	3	1	-	7.185134028456644	4.203337601047785	CCAATCCATCA
chr9	101590209	101590210	chr9:101590210:A:C	rs62575852	A	C	A	Hoxa9_MA0594.1	30	0	-	0	0	.
chr9	101590211	101590212	chr9:101590212:C:T	rs72745334	C	T	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr9	102077273	102077274	chr9:102077274:T:G	rs320287	T	G	G	Hoxa9_MA0594.1	4	1	+	8.4262430855653	1.5174883062500801	GCCATAAATTT
chr9	102185958	102185959	chr9:102185959:G:T	rs112746114	G	T	G	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr9	102655385	102655386	chr9:102655386:A:G	rs10990223	A	G	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	102655433	102655434	chr9:102655434:C:T	rs10820223	C	T	C	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	102867634	102867635	chr9:102867635:A:C	rs843278	A	C	C	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr9	103616356	103616357	chr9:103616357:G:C	rs10820490	G	C	G	Hoxa9_MA0594.1	15	0	-	0	0	.
chr9	104158741	104158742	chr9:104158742:T:C	rs6479223	T	C	T	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr9	104606159	104606160	chr9:104606160:A:G	rs57726274	A	G	A	Hoxa9_MA0594.1	3	1	+	10.60021510825185	7.618418680842992	GCTATAAATCA
chr9	104606177	104606178	chr9:104606178:G:C	rs73509725	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	104641761	104641762	chr9:104641762:T:C	rs1820386	T	C	T	Hoxa9_MA0594.1	8	1	+	9.064232820513286	2.1909447704133966	ACAATAAATCT
chr9	104777070	104777071	chr9:104777071:T:C	rs2482430	T	C	C	Hoxa9_MA0594.1	29	0	+	0	0	.
chr9	104816196	104816197	chr9:104816197:C:T	rs2230807	C	T	C	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	104923959	104923960	chr9:104923960:T:C	rs2437821	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	104941946	104941947	chr9:104941947:G:A	rs2487031	G	A	A	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	105079682	105079683	chr9:105079683:T:C	rs2937352	T	C	T	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	105115421	105115422	chr9:105115422:C:T	rs113110759	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	105115430	105115431	chr9:105115431:G:A	rs1033992032	G	A	G	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	105199091	105199092	chr9:105199092:C:T	rs35958486	C	T	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	105259338	105259339	chr9:105259339:C:T	rs116225209	C	T	C	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	105609229	105609230	chr9:105609230:T:G	rs117966412	T	G	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	106051755	106051756	chr9:106051756:A:G	rs10816370	A	G	G	Hoxa9_MA0594.1	2	1	+	8.044303216718815	2.641941199884177	GTAATAAATCC
chr9	106321565	106321566	chr9:106321566:T:C	rs12555670	T	C	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr9	106500784	106500785	chr9:106500785:G:C	rs4430147	G	C	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	106766607	106766608	chr9:106766608:C:T	rs10739228	C	T	C	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr9	106858267	106858268	chr9:106858268:T:A	rs1040111323	T	A	T	Hoxa9_MA0594.1	1	1	+	8.247667105749517	6.936356090300206	ATCATGAATCA
chr9	106982926	106982927	chr9:106982927:A:G	rs7049113	A	G	a	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	107175135	107175136	chr9:107175136:T:C	rs12337848	T	C	T	Hoxa9_MA0594.1	10	1	-	8.247667105749517	1.6108941199967477	ATCATGAATCA
chr9	107175150	107175151	chr9:107175151:T:C	rs28625783	T	C	T	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	107215028	107215029	chr9:107215029:C:T	rs116078703	C	T	C	Hoxa9_MA0594.1	-16	0	+	0	0	.
chr9	107228133	107228134	chr9:107228134:G:C	rs2680214	G	C	C	Hoxa9_MA0594.1	-13	0	-	0	0	.
chr9	107243928	107243929	chr9:107243929:T:C	rs1048564114	T	C	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	107244091	107244092	chr9:107244092:T:C	rs116176820	T	C	T	Hoxa9_MA0594.1	8	1	+	11.050956304149539	4.1776682540496495	GCCATAAATCT
chr9	107363870	107363871	chr9:107363871:A:G	rs112608778	A	G	A	Hoxa9_MA0594.1	7	1	+	10.084422038576625	3.1814883648737045	CTAATAAATCA
chr9	107389291	107389292	chr9:107389292:C:G	rs1771716	C	G	C	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	107536648	107536649	chr9:107536649:A:G	rs55760189	A	G	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	107667826	107667827	chr9:107667827:G:A	rs7847530	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	107667834	107667835	chr9:107667835:A:T	rs58699609	A	T	A	Hoxa9_MA0594.1	22	0	+	0	0	.
chr9	107803727	107803728	chr9:107803728:G:A	rs61264282	G	A	G	Hoxa9_MA0594.1	9	1	-	7.216289187599767	4.591575969015528	GCCATATATCC
chr9	107894918	107894919	chr9:107894919:C:T	rs139164132	C	T	C	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	107940272	107940273	chr9:107940273:G:A	rs6477606	G	A	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	107946692	107946693	chr9:107946693:A:G	rs10979122	A	G	A	Hoxa9_MA0594.1	10	1	+	8.134870038543875	1.4980970527911053	CCAATATATCA
chr9	108056939	108056940	chr9:108056940:T:C	rs75919311	T	C	T	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	108142456	108142457	chr9:108142457:C:T	rs559603	C	T	T	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	108142457	108142458	chr9:108142458:T:C	rs76554122	T	C	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	108205014	108205015	chr9:108205015:T:C	rs556973	T	C	T	Hoxa9_MA0594.1	7	1	-	9.632353768761673	2.7294200950587535	ACCATCAATCT
chr9	108440611	108440612	chr9:108440612:G:C	rs1188238	G	C	C	Hoxa9_MA0594.1	0	1	+	7.5836428429503755	7.160606422172025	GCTATCAATCC
chr9	108543551	108543552	chr9:108543552:A:T	rs116267088	A	T	A	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	108543552	108543553	chr9:108543553:C:T	rs150934254	C	T	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	108579916	108579917	chr9:108579917:G:T	rs10217224	G	T	T	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	108886451	108886452	chr9:108886452:A:G	rs10816758	A	G	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	109013913	109013914	chr9:109013914:A:C	rs968502087	A	C	.	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	109403869	109403870	chr9:109403870:G:A	rs78424603	G	A	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	109483492	109483493	chr9:109483493:G:C	rs75113691	G	C	G	Hoxa9_MA0594.1	21	0	+	0	0	.
chr9	109497706	109497707	chr9:109497707:T:C	rs960759866	T	C	T	Hoxa9_MA0594.1	2	1	-	8.51281655705086	3.110454540216222	CCAATAAATCC
chr9	109793414	109793415	chr9:109793415:C:T	rs75262504	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr9	109800083	109800084	chr9:109800084:A:C	rs10816875	A	C	C	Hoxa9_MA0594.1	4	1	-	10.074502860705875	3.1657480813906536	CCCATCAATCT
chr9	109800083	109800084	chr9:109800084:A:T	chr9:109800084:A:T	A	T	C	Hoxa9_MA0594.1	4	1	-	10.074502860705875	3.1657480813906536	CCCATCAATCT
chr9	109800098	109800099	chr9:109800099:A:G	rs10816876	A	G	G	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	109820697	109820698	chr9:109820698:C:T	rs79769787	C	T	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	109844031	109844032	chr9:109844032:A:T	rs12235555	A	T	A	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	109911501	109911502	chr9:109911502:A:G	rs1054722610	A	G	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	109967023	109967024	chr9:109967024:G:A	rs7869717	G	A	G	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	110041097	110041098	chr9:110041098:A:T	rs260206	A	T	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	110106996	110106997	chr9:110106997:G:A	rs11788194	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr9	110141720	110141721	chr9:110141721:G:T	rs140908810	G	T	G	Hoxa9_MA0594.1	19	0	-	0	0	.
chr9	110157818	110157819	chr9:110157819:G:A	rs7023507	G	A	G	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	110185655	110185656	chr9:110185656:G:A	rs4978881	G	A	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	110278251	110278252	chr9:110278252:A:C	rs12347405	A	C	C	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	110606497	110606498	chr9:110606498:T:C	rs4978947	T	C	C	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	110606503	110606504	chr9:110606504:C:T	rs4978948	C	T	T	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	110620338	110620339	chr9:110620339:C:T	rs10980494	C	T	C	Hoxa9_MA0594.1	15	0	+	0	0	.
chr9	110620339	110620340	chr9:110620340:G:A	rs11787969	G	A	G	Hoxa9_MA0594.1	16	0	+	0	0	.
chr9	110621619	110621620	chr9:110621620:G:A	rs16915190	G	A	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	110782862	110782863	chr9:110782863:C:T	rs55957860	C	T	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	110784514	110784515	chr9:110784515:A:G	rs2821145	A	G	A	Hoxa9_MA0594.1	8	1	-	10.317685414819367	3.444397364719478	GACATAAATCA
chr9	110912674	110912675	chr9:110912675:A:G	rs4246883	A	G	A	Hoxa9_MA0594.1	-5	0	+	0	0	.
chr9	110912686	110912687	chr9:110912687:A:G	rs1326899	A	G	G	Hoxa9_MA0594.1	7	1	+	8.4262430855653	1.5233094118623804	GCCATAAATTT
chr9	111069038	111069039	chr9:111069039:C:T	rs4978979	C	T	T	Hoxa9_MA0594.1	11	0	+	0	0	.
chr9	111247826	111247827	chr9:111247827:T:A	rs76949102	T	A	T	Hoxa9_MA0594.1	19	0	+	0	0	.
chr9	111288648	111288649	chr9:111288649:A:G	rs10980855	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	111559406	111559407	chr9:111559407:T:A	rs58515751	T	A	T	Hoxa9_MA0594.1	8	1	+	7.173729231511967	3.703969178412515	ACCCTCAATCA
chr9	111662074	111662075	chr9:111662075:G:A	rs10980999	G	A	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	111744839	111744840	chr9:111744840:C:T	rs945850	C	T	T	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	111877676	111877677	chr9:111877677:C:A	rs7038296	C	A	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	111926526	111926527	chr9:111926527:A:G	rs72757814	A	G	G	Hoxa9_MA0594.1	18	0	+	0	0	.
chr9	111936884	111936885	chr9:111936885:G:C	rs12003668	G	C	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	112032683	112032684	chr9:112032684:A:G	rs72762028	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	112032720	112032721	chr9:112032721:T:A	rs700099	T	A	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	112234046	112234047	chr9:112234047:A:C	rs10759538	A	C	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	112305327	112305328	chr9:112305328:T:C	rs114897259	T	C	T	Hoxa9_MA0594.1	30	0	-	0	0	.
chr9	112325269	112325270	chr9:112325270:T:A	rs73543900	T	A	T	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr9	112338789	112338790	chr9:112338790:C:T	rs150221343	C	T	C	Hoxa9_MA0594.1	11	0	+	0	0	.
chr9	112349110	112349111	chr9:112349111:G:A	rs114047622	G	A	g	Hoxa9_MA0594.1	13	0	-	0	0	.
chr9	112433833	112433834	chr9:112433834:T:C	rs7038491	T	C	T	Hoxa9_MA0594.1	3	1	-	9.064232820513286	6.082436393104428	ACAATAAATCT
chr9	112764249	112764250	chr9:112764250:C:T	rs10817380	C	T	C	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	112774462	112774463	chr9:112774463:A:G	rs787285	A	G	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	112853473	112853474	chr9:112853474:A:G	rs1970528	A	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	112884389	112884390	chr9:112884390:C:T	rs76952839	C	T	T	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	112912805	112912806	chr9:112912806:G:A	rs10981545	G	A	G	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr9	113059868	113059869	chr9:113059869:C:G	rs910709121	C	G	-	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	113059879	113059880	chr9:113059880:G:T	rs555971603	G	T	-	Hoxa9_MA0594.1	23	0	+	0	0	.
chr9	113346814	113346815	chr9:113346815:T:C	rs4437724	T	C	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	113360391	113360392	chr9:113360392:C:T	rs3763667	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr9	113540695	113540696	chr9:113540696:G:T	rs10981814	G	T	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	113638655	113638656	chr9:113638656:G:T	rs4978549	G	T	G	Hoxa9_MA0594.1	14	0	+	0	0	.
chr9	113651470	113651471	chr9:113651471:T:C	rs10817497	T	C	T	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	113714932	113714933	chr9:113714933:C:T	rs10981898	C	T	C	Hoxa9_MA0594.1	-14	0	+	0	0	.
chr9	113732300	113732301	chr9:113732301:A:G	rs139548198	A	G	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	113960547	113960548	chr9:113960548:A:G	rs2773396	A	G	G	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	113960552	113960553	chr9:113960553:A:C	rs2761688	A	C	C	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	114079461	114079462	chr9:114079462:C:A	rs2761691	C	A	C	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	114079470	114079471	chr9:114079471:T:C	rs10982058	T	C	T	Hoxa9_MA0594.1	7	1	-	9.503973926077597	2.601040252374678	GCCATCAATCC
chr9	114090827	114090828	chr9:114090828:T:C	rs28393131	T	C	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	114114855	114114856	chr9:114114856:T:C	rs4979339	T	C	t	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	114291292	114291293	chr9:114291293:G:A	rs191790992	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	114366806	114366807	chr9:114366807:G:A	rs2636902	G	A	G	Hoxa9_MA0594.1	1	1	-	8.62774971750127	7.736199956390875	CCCATAAAACA
chr9	114449691	114449692	chr9:114449692:G:C	rs10739413	G	C	G	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	114518737	114518738	chr9:114518738:T:C	rs10982271	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	114608466	114608467	chr9:114608467:C:A	rs62578852	C	A	C	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	114627197	114627198	chr9:114627198:C:G	rs1536737	C	G	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	114646714	114646715	chr9:114646715:C:T	rs10759729	C	T	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	114724873	114724874	chr9:114724874:T:C	rs10817670	T	C	T	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	114830119	114830120	chr9:114830120:C:T	rs181257369	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr9	114972736	114972737	chr9:114972737:A:G	rs2104771	A	G	G	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	114992835	114992836	chr9:114992836:T:C	rs7861233	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	115063324	115063325	chr9:115063325:G:A	rs72758647	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	115107650	115107651	chr9:115107651:C:T	rs1250023	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	115135263	115135264	chr9:115135264:T:C	rs1537720	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	115333657	115333658	chr9:115333658:T:A	rs10817747	T	A	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	115351070	115351071	chr9:115351071:T:A	rs79333681	T	A	A	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	115482202	115482203	chr9:115482203:T:C	rs139878828	T	C	T	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	115517630	115517631	chr9:115517631:A:G	rs10982776	A	G	G	Hoxa9_MA0594.1	5	1	+	9.679444430235927	7.163300618439317	GCCATATATCA
chr9	115653038	115653039	chr9:115653039:C:G	rs75295626	C	G	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	115670374	115670375	chr9:115670375:T:C	rs2900609	T	C	T	Hoxa9_MA0594.1	7	1	-	8.450866189019125	1.5479325153162042	GTCATCAATTA
chr9	115691009	115691010	chr9:115691010:A:T	rs114366030	A	T	A	Hoxa9_MA0594.1	3	1	+	7.643262731242535	0.8005260886348455	GTCATGAATCT
chr9	115691034	115691035	chr9:115691035:G:A	rs10759817	G	A	G	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	115938929	115938930	chr9:115938930:A:T	rs12341094	A	T	A	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	116328464	116328465	chr9:116328465:T:C	rs17301196	T	C	C	Hoxa9_MA0594.1	28	0	-	0	0	.
chr9	116434857	116434858	chr9:116434858:T:C	rs12379198	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	116437540	116437541	chr9:116437541:C:G	rs7018569	C	G	G	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	116593284	116593285	chr9:116593285:G:A	rs72762011	G	A	G	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	116630003	116630004	chr9:116630004:T:C	rs1885244	T	C	C	Hoxa9_MA0594.1	6	1	+	7.2334010995627285	6.837082112140813	CCCATCTATCT
chr9	116979658	116979659	chr9:116979659:T:C	rs1001350	T	C	C	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	117088533	117088534	chr9:117088534:G:A	rs1334086	G	A	G	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr9	117146028	117146029	chr9:117146029:G:A	rs17400793	G	A	G	Hoxa9_MA0594.1	25	0	+	0	0	.
chr9	117185319	117185320	chr9:117185320:C:T	rs6478288	C	T	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	117614899	117614900	chr9:117614900:T:C	rs7038943	T	C	t	Hoxa9_MA0594.1	-16	0	-	0	0	.
chr9	117796732	117796733	chr9:117796733:T:C	rs10115586	T	C	T	Hoxa9_MA0594.1	-8	0	-	0	0	.
chr9	119269224	119269225	chr9:119269225:C:T	rs538025	C	T	T	Hoxa9_MA0594.1	9	1	+	7.727146254177281	5.102433035593043	ACCCTAAATCA
chr9	119368003	119368004	chr9:119368004:A:C	rs79588058	A	C	A	Hoxa9_MA0594.1	3	1	+	6.837082112140813	2.9088676876615716	CCCATCCATCT
chr9	119533654	119533655	chr9:119533655:A:G	rs114362036	A	G	A	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	119768798	119768799	chr9:119768799:G:A	rs4326441	G	A	A	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	119768801	119768802	chr9:119768802:G:A	rs4326442	G	A	A	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	119818296	119818297	chr9:119818297:C:T	rs10984711	C	T	C	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	120783879	120783880	chr9:120783880:T:C	rs80310902	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	121022069	121022070	chr9:121022070:T:G	rs10985129	T	G	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	121518434	121518435	chr9:121518435:A:C	rs7028683	A	C	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	121835887	121835888	chr9:121835888:C:T	rs10760191	C	T	C	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	122629129	122629130	chr9:122629130:A:G	rs1536928	A	G	A	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	122662227	122662228	chr9:122662228:A:C	rs70156	A	C	C	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	123048842	123048843	chr9:123048843:A:G	rs2275510	A	G	A	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	123108042	123108043	chr9:123108043:A:C	rs700084	A	C	C	Hoxa9_MA0594.1	23	0	-	0	0	.
chr9	123457426	123457427	chr9:123457427:A:G	rs3829851	A	G	A	Hoxa9_MA0594.1	3	1	+	8.034113823095115	5.0523173956862575	ACCATCAATAA
chr9	123509552	123509553	chr9:123509553:G:A	rs73577319	G	A	G	Hoxa9_MA0594.1	1	1	-	7.260118532919163	6.368568771808768	GCCATCCATCT
chr9	123544010	123544011	chr9:123544011:A:C	rs12335550	A	C	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	123753009	123753010	chr9:123753010:T:C	rs10818866	T	C	T	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	124038972	124038973	chr9:124038973:G:C	rs34495142	G	C	G	Hoxa9_MA0594.1	-4	0	-	0	0	.
chr9	124324722	124324723	chr9:124324723:G:A	rs944333	G	A	g	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	124393171	124393172	chr9:124393172:C:T	rs139270448	C	T	C	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	124793448	124793449	chr9:124793449:G:A	rs547067436	G	A	A	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	124794424	124794425	chr9:124794425:C:T	rs7855360	C	T	T	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	124828730	124828731	chr9:124828731:T:C	rs35832140	T	C	T	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	124829418	124829419	chr9:124829419:C:A	rs10818992	C	A	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	124907736	124907737	chr9:124907737:T:C	rs75337096	T	C	T	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	125424259	125424260	chr9:125424260:T:G	rs2819627	T	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	125431176	125431177	chr9:125431177:G:T	rs1250505	G	T	T	Hoxa9_MA0594.1	1	1	-	10.046798085586536	7.84393730902683	GCTATCAATCA
chr9	125462918	125462919	chr9:125462919:C:T	rs187867617	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	125462919	125462920	chr9:125462920:G:A	rs4838263	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	125476864	125476865	chr9:125476865:T:G	rs72767094	T	G	T	Hoxa9_MA0594.1	-1	0	+	0	0	.
chr9	125476866	125476867	chr9:125476867:T:C	rs139276978	T	C	T	Hoxa9_MA0594.1	1	1	+	9.53100501591131	10.422554777021706	CTAATCAATCA
chr9	125744694	125744695	chr9:125744695:T:C	rs73667040	T	C	T	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	125744695	125744696	chr9:125744696:C:T	rs12236554	C	T	T	Hoxa9_MA0594.1	-18	0	+	0	0	.
chr9	125748761	125748762	chr9:125748762:T:C	rs191129336	T	C	T	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	125829856	125829857	chr9:125829857:A:G	rs73667094	A	G	A	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	125829859	125829860	chr9:125829860:G:A	rs189647587	G	A	G	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	125887388	125887389	chr9:125887389:A:C	rs113122479	A	C	A	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	126224479	126224480	chr9:126224480:C:T	rs2248934	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	126317574	126317575	chr9:126317575:A:G	rs10987246	A	G	G	Hoxa9_MA0594.1	7	1	+	10.317685414819367	3.414751741116447	GACATAAATCA
chr9	126433215	126433216	chr9:126433216:T:C	rs28464264	T	C	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	126598506	126598507	chr9:126598507:G:A	rs72760776	G	A	G	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	126607119	126607120	chr9:126607120:A:C	rs62578123	A	C	A	Hoxa9_MA0594.1	2	1	+	8.773111023127315	9.894648994041017	CAAATAAATCA
chr9	126667424	126667425	chr9:126667425:C:T	rs72762517	C	T	C	Hoxa9_MA0594.1	6	1	+	8.41793993009146	8.814258917513376	ACCATACATCA
chr9	126673992	126673993	chr9:126673993:C:T	rs3850585	C	T	C	Hoxa9_MA0594.1	-7	0	-	0	0	.
chr9	126694250	126694251	chr9:126694251:G:A	rs28510333	G	A	A	Hoxa9_MA0594.1	20	0	+	0	0	.
chr9	126723431	126723432	chr9:126723432:G:A	rs998024357	G	A	G	Hoxa9_MA0594.1	27	0	-	0	0	.
chr9	126763651	126763652	chr9:126763652:C:G	rs115977816	C	G	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	127352979	127352980	chr9:127352980:A:G	rs10819276	A	G	A	Hoxa9_MA0594.1	3	1	+	7.260118532919163	4.278322105510306	GCCATCCATCT
chr9	127386460	127386461	chr9:127386461:G:A	rs10987629	G	A	G	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	127438491	127438492	chr9:127438492:C:T	rs112897954	C	T	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	127438517	127438518	chr9:127438518:T:C	rs6478782	T	C	T	Hoxa9_MA0594.1	3	1	-	8.45982798789041	5.4780315604815515	CCAATGAATCA
chr9	127628818	127628819	chr9:127628819:G:C	rs10987707	G	C	G	Hoxa9_MA0594.1	-12	0	+	0	0	.
chr9	127701368	127701369	chr9:127701369:T:C	rs1078404	T	C	C	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	127713162	127713163	chr9:127713163:A:C	rs497632	A	C	A	Hoxa9_MA0594.1	5	1	+	8.787894669125532	8.234477646460217	GTCATATATCA
chr9	127742166	127742167	chr9:127742167:G:C	chr9:127742167:G:C	G	C	G	Hoxa9_MA0594.1	19	0	+	0	0	.
chr9	127802216	127802217	chr9:127802217:G:T	rs36204705	G	T	G	Hoxa9_MA0594.1	-20	0	+	0	0	.
chr9	128061810	128061811	chr9:128061811:G:C	chr9:128061811:G:C	G	C	G	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	128086068	128086069	chr9:128086069:A:G	rs569145263	A	G	A	Hoxa9_MA0594.1	-5	0	-	0	0	.
chr9	128090922	128090923	chr9:128090923:T:A	rs10819353	T	A	A	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	128099565	128099566	chr9:128099566:G:T	chr9:128099566:G:T	G	T	G	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	128140904	128140905	chr9:128140905:A:C	rs61125043	A	C	A	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr9	128173676	128173677	chr9:128173677:A:G	rs7847286	A	G	A	Hoxa9_MA0594.1	18	0	+	0	0	.
chr9	128193009	128193010	chr9:128193010:G:A	rs7853638	G	A	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	128193026	128193027	chr9:128193027:C:T	rs7853429	C	T	T	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	128193058	128193059	chr9:128193059:G:T	rs535963241	G	T	G	Hoxa9_MA0594.1	30	0	+	0	0	.
chr9	128279440	128279441	chr9:128279441:G:A	rs1290057886	G	A	g	Hoxa9_MA0594.1	17	0	-	0	0	.
chr9	128279472	128279473	chr9:128279473:A:G	rs2416981	A	G	G	Hoxa9_MA0594.1	-15	0	-	0	0	.
chr9	128899922	128899923	chr9:128899923:A:T	rs73669992	A	T	A	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	129145596	129145597	chr9:129145597:T:G	chr9:129145597:T:G	T	G	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	129331186	129331187	chr9:129331187:T:C	rs10988323	T	C	T	Hoxa9_MA0594.1	0	1	-	9.980405685077507	10.845591197800056	ACAATCAATCA
chr9	129336933	129336934	chr9:129336934:C:T	rs562021491	C	T	C	Hoxa9_MA0594.1	24	0	-	0	0	.
chr9	129397612	129397613	chr9:129397613:G:T	rs12345542	G	T	G	Hoxa9_MA0594.1	1	1	-	6.837082112140813	4.634221335581108	CCCATCCATCT
chr9	129413566	129413567	chr9:129413567:G:C	rs557554700	G	C	G	Hoxa9_MA0594.1	27	0	+	0	0	.
chr9	129442050	129442051	chr9:129442051:G:A	rs755955281	G	A	A	Hoxa9_MA0594.1	16	0	-	0	0	.
chr9	129442058	129442059	chr9:129442059:A:G	rs113042382	A	G	A	Hoxa9_MA0594.1	8	1	-	8.260841894848062	1.3875538447481728	ACCATCTATCA
chr9	129586519	129586520	chr9:129586520:G:A	rs11792170	G	A	G	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	129740780	129740781	chr9:129740781:G:A	rs73670200	G	A	G	Hoxa9_MA0594.1	23	0	+	0	0	.
chr9	129989422	129989423	chr9:129989423:T:G	rs78086972	T	G	T	Hoxa9_MA0594.1	4	1	+	7.1426138406622535	0.23385906134703394	CCCATAAAGCA
chr9	130062017	130062018	chr9:130062018:T:G	rs17220973	T	G	T	Hoxa9_MA0594.1	2	1	-	8.510815797847973	9.632353768761673	ACAATCAATCT
chr9	130086846	130086847	chr9:130086847:C:T	rs2159640	C	T	C	Hoxa9_MA0594.1	3	1	-	8.673564251247663	11.655360678656521	ACCGTAAATCA
chr9	130157091	130157092	chr9:130157092:A:G	rs7034321	A	G	G	Hoxa9_MA0594.1	25	0	-	0	0	.
chr9	130172004	130172005	chr9:130172005:C:A	chr9:130172005:C:A	C	A	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	130195751	130195752	chr9:130195752:T:G	rs78535405	T	G	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	130303886	130303887	chr9:130303887:T:C	rs73549532	T	C	T	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	130303898	130303899	chr9:130303899:C:G	rs116420663	C	G	C	Hoxa9_MA0594.1	2	1	+	7.260118532919163	0.7362185451708239	GCCATCCATCT
chr9	130396513	130396514	chr9:130396514:G:A	rs74485877	G	A	G	Hoxa9_MA0594.1	-3	0	-	0	0	.
chr9	130479192	130479193	chr9:130479193:C:G	rs1220844824	C	G	C	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	130738689	130738690	chr9:130738690:T:C	rs2583844	T	C	T	Hoxa9_MA0594.1	10	1	-	8.99912740272714	2.3623544169743713	TCCATCAATCA
chr9	130921757	130921758	chr9:130921758:T:C	rs7034466	T	C	T	Hoxa9_MA0594.1	-15	0	+	0	0	.
chr9	131490903	131490904	chr9:131490904:C:T	rs76851644	C	T	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	131656882	131656883	chr9:131656883:A:C	rs183443584	A	C	A	Hoxa9_MA0594.1	-13	0	+	0	0	.
chr9	131656943	131656944	chr9:131656944:A:G	rs11794161	A	G	A	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	131656961	131656962	chr9:131656962:T:A	rs58115269	T	A	T	Hoxa9_MA0594.1	8	1	+	12.520546191379072	9.050786138279621	GCCATAAATCA
chr9	131868043	131868044	chr9:131868044:A:G	rs78708998	A	G	A	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	131879829	131879830	chr9:131879830:A:G	rs7036658	A	G	A	Hoxa9_MA0594.1	7	1	+	8.899082879431504	1.996149205728583	AACATCAATCA
chr9	132259966	132259967	chr9:132259967:T:C	rs17146655	T	C	T	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	132486892	132486893	chr9:132486893:G:A	rs115294065	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	132594788	132594789	chr9:132594789:C:G	rs306549	C	G	G	Hoxa9_MA0594.1	-19	0	+	0	0	.
chr9	132740858	132740859	chr9:132740859:C:T	rs4962210	C	T	T	Hoxa9_MA0594.1	11	0	-	0	0	.
chr9	132807641	132807642	chr9:132807642:T:A	rs117329152	T	A	T	Hoxa9_MA0594.1	21	0	-	0	0	.
chr9	133184141	133184142	chr9:133184142:T:C	rs79248148	T	C	T	Hoxa9_MA0594.1	-12	0	-	0	0	.
chr9	133283390	133283391	chr9:133283391:G:A	rs507480	G	A	g	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	133370906	133370907	chr9:133370907:C:A	rs4962046	C	A	C	Hoxa9_MA0594.1	-10	0	+	0	0	.
chr9	133375037	133375038	chr9:133375038:G:C	rs995282472	G	C	G	Hoxa9_MA0594.1	-9	0	+	0	0	.
chr9	133375072	133375073	chr9:133375073:C:G	rs28455779	C	G	C	Hoxa9_MA0594.1	26	0	+	0	0	.
chr9	133725246	133725247	chr9:133725247:T:C	rs2510234	T	C	T	Hoxa9_MA0594.1	-11	0	-	0	0	.
chr9	133725255	133725256	chr9:133725256:T:C	rs2510235	T	C	T	Hoxa9_MA0594.1	-20	0	-	0	0	.
chr9	133761316	133761317	chr9:133761317:T:G	rs71505225	T	G	G	Hoxa9_MA0594.1	-18	0	-	0	0	.
chr9	133890561	133890562	chr9:133890562:G:C	rs2519115	G	C	G	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	133907608	133907609	chr9:133907609:T:C	rs79064869	T	C	C	Hoxa9_MA0594.1	22	0	-	0	0	.
chr9	133907628	133907629	chr9:133907629:G:A	rs75332534	G	A	A	Hoxa9_MA0594.1	2	1	-	9.552544425392455	7.632213342265231	TCCATAAATCA
chr9	133907655	133907656	chr9:133907656:C:T	rs116010192	C	T	C	Hoxa9_MA0594.1	-17	0	+	0	0	.
chr9	133907684	133907685	chr9:133907685:T:C	rs143467693	T	C	T	Hoxa9_MA0594.1	12	0	+	0	0	.
chr9	133907695	133907696	chr9:133907696:C:T	rs113519243	C	T	C	Hoxa9_MA0594.1	23	0	+	0	0	.
chr9	133907696	133907697	chr9:133907697:G:A	rs147977414	G	A	G	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	133963352	133963353	chr9:133963353:G:A	rs10119757	G	A	G	Hoxa9_MA0594.1	-4	0	+	0	0	.
chr9	133999967	133999968	chr9:133999968:A:C	rs460468	A	C	C	Hoxa9_MA0594.1	27	0	-	0	0	.
chr9	134011617	134011618	chr9:134011618:G:C	rs2810478	G	C	g	Hoxa9_MA0594.1	-19	0	-	0	0	.
chr9	134068957	134068958	chr9:134068958:T:G	rs1243422917	T	G	T	Hoxa9_MA0594.1	28	0	+	0	0	.
chr9	134276699	134276700	chr9:134276700:T:G	rs192335968	T	G	T	Hoxa9_MA0594.1	12	0	-	0	0	.
chr9	134351831	134351832	chr9:134351832:G:A	rs545816202	G	A	G	Hoxa9_MA0594.1	14	0	-	0	0	.
chr9	134373292	134373293	chr9:134373293:C:T	rs187609887	C	T	C	Hoxa9_MA0594.1	20	0	-	0	0	.
chr9	134552049	134552050	chr9:134552050:G:A	rs3132304	G	A	G	Hoxa9_MA0594.1	-7	0	+	0	0	.
chr9	134812211	134812212	chr9:134812212:T:A	rs10745387	T	A	A	Hoxa9_MA0594.1	-1	0	-	0	0	.
chr9	134921200	134921201	chr9:134921201:C:T	rs3124957	C	T	C	Hoxa9_MA0594.1	18	0	-	0	0	.
chr9	134990554	134990555	chr9:134990555:G:C	rs7035877	G	C	A	Hoxa9_MA0594.1	-17	0	-	0	0	.
chr9	135071520	135071521	chr9:135071521:C:T	rs76117058	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	135198969	135198970	chr9:135198970:C:G	rs145214595	C	G	C	Hoxa9_MA0594.1	29	0	-	0	0	.
chr9	135198972	135198973	chr9:135198973:T:A	rs118056560	T	A	T	Hoxa9_MA0594.1	26	0	-	0	0	.
chr9	135237181	135237182	chr9:135237182:A:C	rs4842231	A	C	C	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	135807423	135807424	chr9:135807424:C:G	rs7025660	C	G	C	Hoxa9_MA0594.1	-8	0	+	0	0	.
chr9	136109194	136109195	chr9:136109195:A:G	rs61155038	A	G	A	Hoxa9_MA0594.1	24	0	+	0	0	.
chr9	136160987	136160988	chr9:136160988:G:A	rs147959543	G	A	G	Hoxa9_MA0594.1	-6	0	-	0	0	.
chr9	136280038	136280039	chr9:136280039:G:A	rs1035193463	G	A	G	Hoxa9_MA0594.1	-3	0	+	0	0	.
chr9	136526806	136526807	chr9:136526807:C:T	rs11574864	C	T	C	Hoxa9_MA0594.1	13	0	+	0	0	.
chr9	136526810	136526811	chr9:136526811:G:A	rs973486506	G	A	G	Hoxa9_MA0594.1	17	0	+	0	0	.
chr9	136565915	136565916	chr9:136565916:T:C	rs973859044	T	C	T	Hoxa9_MA0594.1	3	1	-	12.097509770600722	9.115713343191864	CCCATAAATCA
chr9	136629019	136629020	chr9:136629020:C:T	rs4880108	C	T	C	Hoxa9_MA0594.1	-2	0	+	0	0	.
chr9	136785264	136785265	chr9:136785265:A:C	rs2784054	A	C	C	Hoxa9_MA0594.1	-14	0	-	0	0	.
chr9	136786573	136786574	chr9:136786574:C:T	rs2784050	C	T	T	Hoxa9_MA0594.1	0	1	+	8.425059106811483	5.880093761603215	CACATAAATCT
chr9	137241177	137241178	chr9:137241178:G:A	rs541966855	G	A	G	Hoxa9_MA0594.1	-2	0	-	0	0	.
chr9	137583359	137583360	chr9:137583360:G:A	rs1891628	G	A	A	Hoxa9_MA0594.1	-11	0	+	0	0	.
chr9	137807886	137807887	chr9:137807887:C:T	rs34390775	C	T	C	Hoxa9_MA0594.1	-9	0	-	0	0	.
chr9	137942898	137942899	chr9:137942899:T:A	rs12347880	T	A	T	Hoxa9_MA0594.1	4	1	+	11.205960009490326	4.2972052301751065	CTCATAAATCA
chr9	138178638	138178639	chr9:138178639:T:G	rs73668514	T	G	.	Hoxa9_MA0594.1	-1	0	-	0	0	.