PLINK v2.00a2.3LM 64-bit Intel (24 Jan 2020)
Options in effect:
  --allow-extra-chr
  --keep-allele-order
  --make-bed
  --out plink
  --output-chr chrM
  --snps-only
  --vcf all.filtered.snps.annotated.vcf.gz

Hostname: hpcz-0009.altiusinstitute.org
Working directory: /tmp/nxf.DhQRzfmtoL
Start time: Mon Dec 13 08:35:01 2021

Note: --keep-allele-order no longer has any effect.
Random number seed: 1639413301
308180 MiB RAM detected; reserving 154090 MiB for main workspace.
Using up to 44 threads (change this with --threads).
--vcf: 8711347 variants scanned.
--vcf: plink-temporary.pgen + plink-temporary.pvar + plink-temporary.psam
written.
496 samples (0 females, 0 males, 496 ambiguous; 496 founders) loaded from
plink-temporary.psam.
8711347 variants loaded from plink-temporary.pvar.
Note: No phenotype data present.
8711347 variants remaining after main filters.
Writing plink.fam ... done.
Writing plink.bim ... done.
Writing plink.bed ... done.

End time: Mon Dec 13 08:36:33 2021