Cell_line	Description	Fetal_origin	#DHSs	#GWAS_SNPs_in_DHSs	Protocol
A549	Epithelial cell line derived from a lung carcinoma tissue	N	"117,992"	180	genome.ucsc.edu/ENCODE/protocols/cell/human/A549_Stam_protocol.pdf
AG04449	Fetal buttock/thigh fibroblast	Y	"174,802"	202	genome.ucsc.edu/ENCODE/protocols/cell/human/AG04449_Stam_protocol.pdf
AG04450	Fetal lung fibroblast	Y	"150,114"	187	genome.ucsc.edu/ENCODE/protocols/cell/human/AG04450_Stam_protocol.pdf
AG09309	Adult human toe fibroblast	N	"197,301"	266	genome.ucsc.edu/ENCODE/protocols/cell/human/AG09309_Stam_protocol.pdf
AG09319	Adult human gum tissue fibroblasts	N	"137,192"	190	genome.ucsc.edu/ENCODE/protocols/cell/human/AG09319_Stam_protocol.pdf
AG10803	Adult human abdominal skin fibroblasts	N	"171,903"	224	genome.ucsc.edu/ENCODE/protocols/cell/human/AG10803_Stam_protocol.pdf
AoAF	Normal Human Aortic Adventitial Fibroblast Cells	N	"169,477"	261	genome.ucsc.edu/ENCODE/protocols/cell/human/AoAF_Stam_protocol.pdf
BE2_C	Human Neuroblastoma cell line	N	"168,003"	259	genome.ucsc.edu/ENCODE/protocols/cell/human/BE2-C_Stam_protocol.pdf
BJ	Skin fibroblasts	N	"162,671"	246	genome.ucsc.edu/ENCODE/protocols/cell/human/BJ-tert_Stam_protocol.pdf
Caco-2	Colorectal adenocarcinoma	N	"117,293"	179	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
CD14+	"Monocytes, CD14+"	N	"117,181"	273	genome.ucsc.edu/ENCODE/protocols/cell/human/MonoCD14_Stam_protocol.pdf
CD19+	"Monocytes, CD19+"	N	"75,086"	225	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/HematopoieticCells_DNaseTreatment_V5_UW-NREMC.pdf
CD20+	"B-lymphocytes, CD20+"	N	"170,412"	328	genome.ucsc.edu/ENCODE/protocols/cell/human/CD20+_Stam_protocol.pdf
CD20+	"B-lymphocytes, CD20+"	N	"86,908"	268	genome.ucsc.edu/ENCODE/protocols/cell/human/CD20+_Stam_protocol.pdf
CD3+	"T-lymphocytes, CD3+"	N	"77,933"	177	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/HematopoieticCells_DNaseTreatment_V5_UW-NREMC.pdf
CD34+	Mobilized hematopoietic progenitor cells	N	"134,718"	230	genome.ucsc.edu/ENCODE/protocols/cell/human/CD34+Mobilized_Stam_protocol.pdf
CD3+_CordBlood	"Cord blood, CD3+"	N	"74,992"	176	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/HematopoieticCells_DNaseTreatment_V5_UW-NREMC.pdf
CD4+	"T helper cells, CD4+"	N	"94,881"	239	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/HematopoieticCells_DNaseTreatment_V5_UW-NREMC.pdf
CD56+	"Monocytes, CD56+"	N	"105,724"	277	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/HematopoieticCells_DNaseTreatment_V5_UW-NREMC.pdf
CD8+	"Cytotoxic T cells, CD8+"	N	"75,382"	185	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/HematopoieticCells_DNaseTreatment_V5_UW-NREMC.pdf
CMK	Acute megakaryocytic leukemia cells	N	"123,561"	210	genome.ucsc.edu/ENCODE/protocols/cell/human/CMK_Stam_protocol.pdf
GM06990	Lymphoblastoid 	N	"86,958"	210	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
GM12864	Lymphoblastoid 	N	"132,370"	262	genome.ucsc.edu/ENCODE/protocols/cell/human/GM12864_Stam_protocol.pdf
GM12865	Lymphoblastoid 	N	"133,962"	280	genome.ucsc.edu/ENCODE/protocols/cell/human/GM12865_Stam_protocol.pdf
GM12878	Lymphoblastoid 	N	"109,419"	240	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
H1_P18	H1-derived embryonic stem cells	-	"178,572"	255	"Yu et al., Cell Stem Cell 8, 326-334 (2011)"
H7-hESC	Undifferentiated embryonic stem cells	-	"284,627"	305	genome.ucsc.edu/ENCODE/protocols/cell/human/H7-hESC_Stam_protocol.pdf
H9_P42	H9-derived embryonic stem cells	-	"140,166"	192	"Yu et al., Cell Stem Cell 8, 326-334 (2011)"
HAEpiC	Human Amniotic Epithelial Cells	Y	"200,771"	292	genome.ucsc.edu/ENCODE/protocols/cell/human/HAEpiC_Stam_protocol.pdf
HAc	Human Astrocytes - cerebellar	Y	"183,752"	239	genome.ucsc.edu/ENCODE/protocols/cell/human/HAc_Stam_protocol.pdf
HAh	Human Astrocytes - hippocampal	Y	"215,151"	351	genome.ucsc.edu/ENCODE/protocols/cell/human/HAh_Stam_protocol.pdf
HAsp	Human Astrocytes - Spinal cord	Y	"215,720"	350	genome.ucsc.edu/ENCODE/protocols/cell/human/HA-sp_Stam_protocol.pdf
HBMEC	Human Brain Microvascular Endothelial Cells 	Y	"196,870"	320	genome.ucsc.edu/ENCODE/protocols/cell/human/HBMEC_Stam_protocol.pdf
HCF	Human Cardiac Fibroblasts	Y	"171,858"	268	genome.ucsc.edu/ENCODE/protocols/cell/human/HCF_Stam_protocol.pdf
HCFaa	Human Cardiac Fibroblasts - adult atrial 	N	"184,810"	323	genome.ucsc.edu/ENCODE/protocols/cell/human/HCFaa_Stam_protocol.pdf
HCM	Human Cardiomyocytes 	Y	"191,262"	308	genome.ucsc.edu/ENCODE/protocols/cell/human/HCM_Stam_protocol.pdf
HCPEpiC	Human Choroid Plexus Epithelial Cells	Y	"209,492"	304	genome.ucsc.edu/ENCODE/protocols/cell/human/HCPEpiC_Stam_protocol.pdf
HCT-116	Colon adenocarcinoma	N	"104,196"	170	genome.ucsc.edu/ENCODE/protocols/cell/human/HCT116_Stam_protocol.pdf
HConF	Human Conjunctival Fibroblasts	Y	"150,877"	209	genome.ucsc.edu/ENCODE/protocols/cell/human/HConF_Stam_protocol.pdf
HEEpiC	Human Esophageal Epithelial Cells	Y	"213,954"	266	genome.ucsc.edu/ENCODE/protocols/cell/human/HEEpiC_Stam_protocol.pdf
HepG2	Hepatocellular carcinoma	N	"81,159"	133	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
HESC	Human H1 Embryonic Stem Cell line	-	"163,880"	195	genome.ucsc.edu/ENCODE/protocols/cell/human/HHSEC_Stam_protocol.pdf
HFF	Human Foreskin Fibroblasts	N	"189,148"	329	genome.ucsc.edu/ENCODE/protocols/cell/human/HFF_Stam_protocol.pdf
HFF_Myc	Human Foreskin Fibroblasts_Myc Transgene	N	"215,171"	333	genome.ucsc.edu/ENCODE/protocols/cell/human/HFFMyc_Stam_protocol.pdf
HGF	Human Gingival Fibroblasts	N	"148,852"	191	genome.ucsc.edu/ENCODE/protocols/cell/human/HGF_Stam_protocol.pdf
HIPEpiC	Human Iris Pigment Epithelial Cells 	Y	"231,963"	304	genome.ucsc.edu/ENCODE/protocols/cell/human/HIPEpiC_Stam_protocol.pdf
HL-60	Human promyelocyticleukemia cells	N	"153,865"	296	genome.ucsc.edu/ENCODE/protocols/cell/human/HL-60_Stam_protocol.pdf
HMEC	Human mammary epithelial cells	N	"139,620"	214	genome.ucsc.edu/ENCODE/protocols/cell/human/HMEC_Stam_protocol.pdf
HMF	Human Mammary Fibroblasts	N	"176,102"	236	genome.ucsc.edu/ENCODE/protocols/cell/human/HMF_Stam_protocol.pdf
HMVEC-LBl	Human Lung Blood Microvascular Endothelial Cells	N	"161,548"	283	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-LBl_Stam_protocol.pdf
HMVEC-LLy	Human Lung Lymphatic Microvascular Endothelial Cells	N	"130,544"	235	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-LLy_Stam_protocol.pdf
HMVEC-dAd	Adult Human Dermal Microvascular Endothelial Cells	N	"115,973"	175	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVECdAd_Stam_protocol.pdf
HMVEC-dBl-Ad	Adult Human Dermal Blood Microvascular Endothelial Cells	N	"149,796"	268	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-dBl-Ad_Stam_protocol.pdf
HMVEC-dBl-Neo	Neonatal Human Dermal Blood Microvascular Endothelial Cells	N	"154,291"	310	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-dBl-Neo_Stam_protocol.pdf
HMVEC-dLy-Ad	Adult Human Dermal Lymphatic Microvascular Endothelial Cells	N	"115,834"	194	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-dLy-Ad_Stam_protocol.pdf
HMVEC-dLy-Neo	Neonatal Human Dermal Lymphatic Microvascular Endothelial Cells	N	"139,708"	242	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-dLy-Neo_Stam_protocol.pdf
HMVEC-dNeo	Neonatal Human Dermal Microvascular Endothelial Cells	N	"132,325"	215	genome.ucsc.edu/ENCODE/protocols/cell/human/HMVEC-dNeo_Stam_protocol.pdf
HNPCEpiC	Human Non-Pigment Ciliary Epithelial Cells 	Y	"217,558"	296	genome.ucsc.edu/ENCODE/protocols/cell/human/HNPCEpiC_Stam_protocol.pdf
HPAEC	Human Pulmonary Artery Endothelial Cells	N	"125,462"	170	genome.ucsc.edu/ENCODE/protocols/cell/human/HPAEC_Stam_protocol.pdf
HPAF	Human Pulmonary Artery Fibroblasts	Y	"181,244"	302	genome.ucsc.edu/ENCODE/protocols/cell/human/HPAF_Stam_protocol.pdf
HPF	Human Pulmonary Fibroblasts 	Y	"147,153"	225	genome.ucsc.edu/ENCODE/protocols/cell/human/HPF_Stam_protocol.pdf
HPdLF	Human Periodontal Ligament Fibroblasts	N	"169,679"	260	genome.ucsc.edu/ENCODE/protocols/cell/human/HPdLF_Stam_protocol.pdf
HRCEpiC	Human renal cortical epithelial cells (normal)	N	"193,462"	294	genome.ucsc.edu/ENCODE/protocols/cell/human/HRCEpiC_Stam_protocol.pdf
HRE	Human renal epithelial cells (normal)	N	"197,779"	257	genome.ucsc.edu/ENCODE/protocols/cell/human/HRE_Stam_protocol.pdf
HRGEC	Human Renal Glomerular Endothelial Cells	Y	"143,319"	188	genome.ucsc.edu/ENCODE/protocols/cell/human/HRGEC_Stam_protocol.pdf
HRPEpiC	Human Retinal Pigment Epithelial Cells 	Y	"229,606"	298	genome.ucsc.edu/ENCODE/protocols/cell/human/HRPEpiC_Stam_protocol.pdf
HSMM	Human Skeletal Muscle Myoblasts	N	"234,182"	335	genome.ucsc.edu/ENCODE/protocols/cell/human/HSMM_Stam_protocol.pdf
HSMM_D	Human Skeletal Muscle Myoblasts_differentiated	N	"233,756"	414	genome.ucsc.edu/ENCODE/protocols/cell/human/HSMM_Stam_protocol.pdf
HUVEC	Human umbilical vein endothelial cells	N	"115,081"	229	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
HVMF	Human Villous Mesenchymal Fibroblasts 	Y	"170,308"	296	genome.ucsc.edu/ENCODE/protocols/cell/human/HVMF_Stam_protocol.pdf
HeLa-S3	Cervical carcinoma	N	"119,081"	247	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
IMR90	Fibroblasts	N	"196,940"	278	genome.ucsc.edu/ENCODE/protocols/cell/human/IMR90_Stam_protocol.pdf
Jurkat	T lymphoblastoid cell line derived from acute T cell leukemia	N	"152,487"	251	genome.ucsc.edu/ENCODE/protocols/cell/human/Jurkat_Stam_protocol.pdf
K562	Chronic myeloid leukemia	N	"142,920"	268	N/A
LNCaP	Prostate adenocarcinoma cell line	N	"184,899"	239	genome.ucsc.edu/ENCODE/protocols/cell/human/LNCaP_Stam_protocol.pdf
MCF-7	Mammary gland adenocarcinoma	N	"133,229"	168	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
Mesendoderm	H1 derived mesendoderm cells	-	"214,950"	273	"Vodyanik et al., Cell Stem Cell 7, 718-729 (2010)"
NB4	Acute Promyelocytic Leukemia cell line	N	"131,948"	240	genome.ucsc.edu/ENCODE/protocols/cell/human/NB4_Stam_protocol.pdf
NH-A	Normal Human Astrocytes	Y	"189,150"	280	genome.ucsc.edu/ENCODE/protocols/cell/human/NHA_Stam_protocol.pdf
NHDF-Ad	Adult Human Dermal Fibroblasts	N	"226,683"	330	genome.ucsc.edu/ENCODE/protocols/cell/human/NHDF-Ad_Stam_protocol.pdf
NHDF-neo	Neonatal Human Dermal Fibroblasts	N	"184,888"	269	genome.ucsc.edu/ENCODE/protocols/cell/human/NHDF-neo_Stam_protocol.pdf
NHEK	Normal Human Epidermal Keratinocytes	N	"145,886"	216	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
NHLF	Normal Human Lung Fibroblasts	N	"204,839"	296	genome.ucsc.edu/ENCODE/protocols/cell/human/NHLF_Stam_protocol.pdf
NPC	H1 derived neuroprogenitor cells	-	"93,396"	148	N/A
NT2-D1	Human malignant pluripotent embryonal cancer cell line - Induced by RA to neuronal cells	N	"187,959"	259	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
PANC-1	Pancreatic carcinoma cell line	N	"117,169"	203	genome.ucsc.edu/ENCODE/protocols/cell/human/PANC-1_Stam_protocol.pdf
PrEC	Human Prostate Epithelial Cell Line	N	"176,183"	220	genome.ucsc.edu/ENCODE/protocols/cell/human/PrEC_Stam_protocol.pdf
RPTEC	Human Renal Proximal Tubule Cells	N	"171,601"	293	genome.ucsc.edu/ENCODE/protocols/cell/human/RPTEC_Stam_protocol.pdf
SAEC	Small airway epithelial cells	N	"195,662"	279	genome.ucsc.edu/ENCODE/protocols/cell/human/SAEC_Stam_protocol.pdf
SK-N-SH_RA	Neuroblastoma cell lines differentiated with retinoic acid	N	"78,279"	99	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
SK_N_MC	Neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor	N	"154,275"	177	genome.ucsc.edu/ENCODE/protocols/cell/human/SK-N-MC_Stam_protocol.pdf
SKMC	Human skeletal muscle cells	Y	"208,844"	274	genome.ucsc.edu/ENCODE/protocols/cell/human/SkMC_Stam_protocol.pdf
Skin_Fibroblasts	"Foreskin-derived fibroblasts, 4 samples"	N	"273,426"	507	N/A
Skin_Keratinocytes	"Foreskin-derived Keratinocytes, 4 samples"	N	"246,119"	461	N/A
Skin_Melanocytes	"Foreskin-derived melanocytes, 2 samples"	N	"205,035"	396	N/A
Trophoblast	H1 derived trophoblasts	-	"145,534"	181	N/A
WERI-Rb-1	Retinoblastoma cell line	N	"190,883"	257	genome.ucsc.edu/ENCODE/protocols/cell/human/WERI-Rb-1_Stam_protocol.pdf
WI-38	Embryonic lung fibroblasts immortilized hTERT	Y	"164,321"	252	genome.ucsc.edu/ENCODE/protocols/cell/human/WI38_Stam_protocol.pdf
WI-38_TAM	Embryonic lung fibroblasts immortilized hTERT_Tamoxifin treated	Y	"206,929"	358	genome.ucsc.edu/ENCODE/protocols/cell/human/WI38_Stam_protocol.pdf
fAdrenal	"Fetal adrenal tissue, 5 samples, ages 7-12 weeks"	Y	"282,181"	480	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
fBrain	"Fetal brain tissue, 12 samples, ages 12-20 weeks"	Y	"441,136"	621	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
fHeart	"Fetal heart tissue, 12 samples, ages 13-21 weeks"	Y	"393,615"	743	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf
fIntestine_Lg	"Fetal large-intestine tissue, 15 samples, ages 12-16 weeks"	Y	"439,553"	839	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf
fIntestine_Sm	"Fetal small-intestine tissue, 13 samples, ages 12-16 weeks"	Y	"360,316"	735	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf
fKidney	"Fetal kidney tissue, 47 samples, ages 12-21 weeks"	Y	"666,350"	1124	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
fLung	"Fetal lung tissue, 34 samples, ages 10-17 weeks"	Y	"442,491"	917	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
fMuscle	"Fetal muscle tissue, 48 samples, ages 12-18 weeks"	Y	"632,517"	1176	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf
fPlacenta	"Placenta tissue, 4 samples, ages 12-15 weeks"	Y	"281,754"	553	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf
fSkin	"Fetal fibroblasts, 17 samples, ages 12-14 weeks"	Y	"392,999"	591	N/A
fSpinal_cord	"Fetal spinal-cord tissue, 3 samples, ages 12-16 weeks"	Y	"320,476"	554	"roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf, but with gentleMACSDissociator Program ""B.01 C Tube"""
fSpleen	"Fetal spleen tissue, age 16 weeks"	Y	"175,572"	334	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
fStomach	"Fetal stomach tissue, 11 samples, ages 13-21 weeks"	Y	"346,348"	658	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_human__tissue-gentleMACS_V5_UW-NREMC.pdf
fTestes	"Fetal testicle tissue, age 16 weeks"	Y	"170,843"	309	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
fThymus	"Fetal thymus tissue, 10 samples, ages 12-21 weeks"	Y	"341,548"	658	roadmapepigenomics.org/files/protocols/experimental/dnaseI-sensitivity/Nuclei_isolation_DNase_Treatment_Human__tissue_DouncingV4_UW-NREMC.pdf
Th1	Human primary T helper 1 cells	N	"70,474"	141	N/A
Th1	Human primary T helper 1 cells	N	"73,754"	190	genome.ucsc.edu/ENCODE/protocols/cell/human/Stam_15_protocols.pdf
Th17	Human primary T helper 17 cells	N	"78,543"	130	N/A
Th2	Human primary T helper 2 cells	N	"111,450"	220	N/A
Th2	Human primary T helper 2 cells	N	"80,196"	201	genome.ucsc.edu/ENCODE/protocols/cell/human/Th2_Stam_protocol.pdf
iPS_19_11	Induced pluripotent stem cells	-	"204,668"	215	"Yu et al., Cell Stem Cell 8, 326-334 (2011)"
iPS_19_7	Induced pluripotent stem cells	-	"185,193"	199	"Yu et al., Cell Stem Cell 8, 326-334 (2011)"
iPS_4_7	Induced pluripotent stem cells	-	"193,671"	226	"Yu et al., Cell Stem Cell 8, 326-334 (2011)"
iPS_6_9	Induced pluripotent stem cells	-	"191,788"	239	"Yu et al., Cell Stem Cell 8, 326-334 (2011)"
vHMEC	Human Mammary Epithelial Cells	N	"161,796"	272	N/A